Psyllid ID: psy1502
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 597 | 2.2.26 [Sep-21-2011] | |||||||
| P91660 | 1290 | Probable multidrug resist | no | N/A | 0.854 | 0.395 | 0.493 | 1e-140 | |
| O15439 | 1325 | Multidrug resistance-asso | yes | N/A | 0.807 | 0.363 | 0.519 | 1e-135 | |
| Q54P13 | 1593 | ABC transporter C family | yes | N/A | 0.805 | 0.301 | 0.419 | 1e-104 | |
| Q6UR05 | 1531 | Multidrug resistance-asso | no | N/A | 0.825 | 0.322 | 0.409 | 2e-98 | |
| B2RX12 | 1523 | Canalicular multispecific | no | N/A | 0.839 | 0.328 | 0.395 | 5e-97 | |
| P33527 | 1531 | Multidrug resistance-asso | no | N/A | 0.825 | 0.322 | 0.4 | 6e-97 | |
| Q54U44 | 1323 | ABC transporter C family | no | N/A | 0.814 | 0.367 | 0.398 | 9e-97 | |
| Q8HXQ5 | 1530 | Multidrug resistance-asso | no | N/A | 0.825 | 0.322 | 0.403 | 2e-96 | |
| Q9R1X5 | 1436 | Multidrug resistance-asso | no | N/A | 0.800 | 0.332 | 0.412 | 2e-96 | |
| Q63120 | 1541 | Canalicular multispecific | no | N/A | 0.824 | 0.319 | 0.379 | 3e-96 |
| >sp|P91660|L259_DROME Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/517 (49%), Positives = 353/517 (68%), Gaps = 7/517 (1%)
Query: 42 TFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGL-FVAGISRSTAFYSACMRCSKGIHK 100
T++ +T H + ++S ++LI+ L + +S S ++ + S +H
Sbjct: 732 TYWVKKESTAAGHGEMEDMESKSMDVYKYTLIIILSVIMNLSSSFLLFNIAKKASIRLHN 791
Query: 101 KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLS 160
+F V + + FFS N G ILNRF+KDM VDEVLP ++D Q + ++G +IV +
Sbjct: 792 TIFNRVTRADMHFFSINKHGSILNRFTKDMSQVDEVLPVVLVDVMQIALWLAGIIIVIAN 851
Query: 161 VNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA 220
VNPL +P L+L +F+ L YL+TS+ LK +E + RSPV++HL A L+GL TIRA A
Sbjct: 852 VNPLLLVPTLMLSVIFYHLRNLYLKTSRDLKRVEAINRSPVYSHLAASLNGLTTIRALDA 911
Query: 221 AKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-ADIGGKVG 279
++L +EFD +QD HSS + +++ T+ F Y ++ +C++Y+S I +SFF F G VG
Sbjct: 912 QRVLEKEFDSYQDAHSSAFFMYISTSQAFGYCMNCICVIYISIITLSFFAFPPGNGADVG 971
Query: 280 LAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNL-SPNYEDENEIWPVL 338
L +TQ M L+ +VQW +RQ AE+EN M +V+R+VEY +EPEG L +P+ + + WP
Sbjct: 972 LVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYESIEPEGMLEAPDDKKPPKTWPEQ 1031
Query: 339 GKIEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395
G+I F+ N+RY + V+K+L+ I P+EK+GIVGRTGAGKSSLI A+FRL+ +G
Sbjct: 1032 GEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLINALFRLSYTDG 1091
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455
+ ID DT + L LR ISIIPQ+PVLFSGT+R NLDPF++Y D LW L+EV+LK
Sbjct: 1092 SVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEKLWGCLEEVKLK 1151
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+++ + GL + EGGTNFSVGQRQL+CLARAI+R N ILV+DEATANVDP+TD LIQ
Sbjct: 1152 EVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLIQ 1211
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
TIR KF DCTVLTIAHRLHTI+DSDKV+VMD+G V
Sbjct: 1212 ATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVV 1248
|
Vital for development. Drosophila melanogaster (taxid: 7227) |
| >sp|O15439|MRP4_HUMAN Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/489 (51%), Positives = 342/489 (69%), Gaps = 7/489 (1%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
Y+GIY L V + GI+RS + + S+ +H KMFE+++ +P+ FF NP GRILN
Sbjct: 764 YLGIYSGLTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILN 823
Query: 125 RFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184
RFSKD+G +D++LP LD Q ++QV G + V+++V P +IP++ L +F L + +L
Sbjct: 824 RFSKDIGHLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFIFLRRYFL 883
Query: 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVY 244
TS+ +K LE TRSPVF+HL++ L GL TIRA+ A + E FD HQDLHS W LF+
Sbjct: 884 ETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLT 943
Query: 245 TNMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVTQTMTLMGVVQWAMRQAAEV 302
T+ FA +D +C +++ + A G+VGLA++ +TLMG+ QW +RQ+AEV
Sbjct: 944 TSRWFAVRLDAICAMFVIIVAFGSLILAKTLDAGQVGLALSYALTLMGMFQWCVRQSAEV 1003
Query: 303 ENHMISVKRLVEYTKLEPEGNLSPNYEDE-NEIWPVLGKIEFQNTNVRY-LSGPRVIKNL 360
EN MISV+R++EYT LE E Y+ WP G I F N N Y GP V+K+L
Sbjct: 1004 ENMMISVERVIEYTDLEKEAPW--EYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHL 1061
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420
I +EK+GIVGRTGAGKSSLI+A+FRL+E EG I ID I T ++ L LR +SIIP
Sbjct: 1062 TALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIP 1121
Query: 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG-LNMTVYEGGTNFSVGQ 479
Q+PVLF+GT+RKNLDPF ++ D LW ALQEV+LK+ I + G ++ + E G+NFSVGQ
Sbjct: 1122 QEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQ 1181
Query: 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539
RQL+CLARAI+R N IL++DEATANVDP+TD LIQ+ IR+KFA CTVLTIAHRL+TI+DS
Sbjct: 1182 RQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDS 1241
Query: 540 DKVLVMDSG 548
DK++V+DSG
Sbjct: 1242 DKIMVLDSG 1250
|
May be an organic anion pump relevant to cellular detoxification. Homo sapiens (taxid: 9606) |
| >sp|Q54P13|ABCC8_DICDI ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/491 (41%), Positives = 305/491 (62%), Gaps = 10/491 (2%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
Y+ IY + G A RS + ++ SK H+KMF+AV+ SP++FF T P GRILN
Sbjct: 1067 YLSIYVAFSCGTIAATFLRSFSMVFGSIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILN 1126
Query: 125 RFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184
RFSKD +DE + + + QV G++IV V+P + ++ + LF+ + K YL
Sbjct: 1127 RFSKDQLTIDESIARTLGMFLNTFCQVVGSIIVIAWVSPFIILAMVPVGALFYFIQKYYL 1186
Query: 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVY 244
+S+ L LEGV+RSP++ H + L G+ TIRA V E + D + +++ +
Sbjct: 1187 NSSRELTRLEGVSRSPIYAHFSETLAGVTTIRAFKDVARFVTENERLLDENQKCYYINIS 1246
Query: 245 TNMGFAYLIDFL--CLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEV 302
+N A ++FL CL+ + + G GL +T + + G + W +R + ++
Sbjct: 1247 SNRWLAIRLEFLGACLVSCAVLYTVLARSRIEAGTAGLVITYALAITGNMNWMVRMSCDL 1306
Query: 303 ENHMISVKRLVEYTKLEPEGNLSPNYEDEN--EIWPVLGKIEFQNTNVRYLSG-PRVIKN 359
EN ++S++R+ EY L E +P + D++ WP GKI F+N + Y G V++
Sbjct: 1307 ENSVVSIERIQEYCLLPSE---APLFNDKSVPMSWPSHGKIVFKNLWLTYREGLDPVLRG 1363
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418
+N TI PK K+GIVGRTGAGKSSL A+FRL E + G I+ID ID ++ L+ LRS ++I
Sbjct: 1364 INCTIEPKTKVGIVGRTGAGKSSLTQALFRLVEPLRGTIEIDGIDITELGLNPLRSRMAI 1423
Query: 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSV 477
IPQDPVLF+G++R NLDPF++Y D+ +W A++ L I + GL+ V +GG NFSV
Sbjct: 1424 IPQDPVLFAGSVRYNLDPFDQYDDHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSV 1483
Query: 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537
GQRQL+ + RA+++ I+VLDEA++++D +D LIQ TIR KFADCTVLTIAHRL TI
Sbjct: 1484 GQRQLLVIGRALLKKANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGTIA 1543
Query: 538 DSDKVLVMDSG 548
DSDK++V+D G
Sbjct: 1544 DSDKIMVLDKG 1554
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 209/510 (40%), Positives = 304/510 (59%), Gaps = 17/510 (3%)
Query: 46 IVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
IVN T Q H LS +GI + V + +S F S+ +H + +
Sbjct: 1004 IVNGT--QEHTKIRLSVYGALGISQGITVFGYSMAVSIGGIF------ASRRLHVDLLQN 1055
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLF 165
V+ SP++FF PSG ++NRFSK++ VD ++P+ + + V GA I+ L P+
Sbjct: 1056 VLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLATPIA 1115
Query: 166 SI--PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223
SI P L L+Y F + + Y+ +S+ LK LE V+RSPV++H N L G+ IRA +
Sbjct: 1116 SIIIPPLGLIYFF--VQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQER 1173
Query: 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIGGKVGLA 281
+ + D D + ++ + N A ++ + C++ + + + G VGL+
Sbjct: 1174 FIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFSVISRHSLSAGLVGLS 1233
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
V+ ++ + + W +R ++E+E ++++V+RL EY++ E E WP +G++
Sbjct: 1234 VSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQEMAPPSTWPQVGRV 1293
Query: 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
EF++ +RY V+K++NITI+ EK+GIVGRTGAGKSSL +FR+ E EG I I
Sbjct: 1294 EFRDYGLRYRENLDLVLKHINITINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIII 1353
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
DDI+ + L LR I+IIPQDPVLFSG+LR NLDPF +Y D +WT+L+ LKD +
Sbjct: 1354 DDINIAKIGLHDLRVKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVS 1413
Query: 460 E-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
LN EGG N SVGQRQL+CLARA++R ILVLDEATA VD +TD LIQ TIR
Sbjct: 1414 GLPDKLNQECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIR 1473
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+F DCTVLTIAHRL+TIMD +V+V+D G
Sbjct: 1474 TQFDDCTVLTIAHRLNTIMDYTRVIVLDKG 1503
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Canis familiaris (taxid: 9615) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 207/524 (39%), Positives = 313/524 (59%), Gaps = 23/524 (4%)
Query: 39 GRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSL--IVGLFVAGISRSTAFYSACMRCSK 96
G + + +N +H + T +G+Y +L + GL V +S T A ++ ++
Sbjct: 983 GANVWLSAWSNDAEEHGQQN--KTSVRLGVYAALGILQGLLVM-LSAFTMVVGA-IQAAR 1038
Query: 97 GIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALI 156
+H+ + + SP +FF T PSGRILNRFSKD+ +DEVL +L ++
Sbjct: 1039 LLHEALLHNKIRSPQSFFDTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIM 1098
Query: 157 VSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIR 216
V ++ PLF + VL L L+ + + Y+ TS+ LK LE ++RSP+F+H + + G IR
Sbjct: 1099 VIVASTPLFMVVVLPLAVLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIR 1158
Query: 217 AHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADI 274
A+G + D D + + + ++ +N ++F+ C++ + + FA I
Sbjct: 1159 AYGRIQDFKVLSDTKVDNNQKSSYPYIASNRWLGVHVEFVGNCVVLFAAL------FAVI 1212
Query: 275 G------GKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNY 328
G G VGL+V+ + + + W +R +++E+++I+V+R+ EY+K + E
Sbjct: 1213 GRNSLNPGLVGLSVSYALQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVES 1272
Query: 329 EDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
E WP G +EF+N +VRY G V+KN+ + + EK+GIVGRTGAGKSS+ +
Sbjct: 1273 NRAPEGWPTRGMVEFRNYSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTLCL 1332
Query: 388 FRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446
FR+ E EG I ID ++ + L LRS ++IIPQDP+LFSGTLR NLDPF +Y + +W
Sbjct: 1333 FRILEAAEGEIVIDGLNVAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIW 1392
Query: 447 TALQEVELKDMIM-EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ L + + AGL+ EGG N SVGQRQL+CLARA++R + +LVLDEATA +
Sbjct: 1393 RALELSHLNTFVSSQPAGLDFQCAEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAI 1452
Query: 506 DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
D +TD LIQ TIR +F DCTVLTIAHRL+TIMD ++VLV+D GV
Sbjct: 1453 DLETDDLIQGTIRTQFEDCTVLTIAHRLNTIMDYNRVLVLDKGV 1496
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 204/510 (40%), Positives = 305/510 (59%), Gaps = 17/510 (3%)
Query: 46 IVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
IVN T Q H T+ + +Y +L + +A S A + S+ +H + +
Sbjct: 1004 IVNGT--QEH------TKVRLSVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHS 1055
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLF 165
++ SP++FF PSG ++NRFSK++ VD ++P+ + + V GA IV L P+
Sbjct: 1056 ILRSPMSFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLFNVIGACIVILLATPIA 1115
Query: 166 SI--PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223
+I P L L+Y F + + Y+ +S+ LK LE V+RSPV++H N L G+ IRA +
Sbjct: 1116 AIIIPPLGLIYFF--VQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQER 1173
Query: 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIGGKVGLA 281
+ + D D + ++ + N A ++ + C++ + + + G VGL+
Sbjct: 1174 FIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLS 1233
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
V+ ++ + + W +R ++E+E ++++V+RL EY++ E E WP +G++
Sbjct: 1234 VSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSSWPQVGRV 1293
Query: 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
EF+N +RY V++++N+TI+ EK+GIVGRTGAGKSSL +FR+ E EG I I
Sbjct: 1294 EFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIII 1353
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D I+ + L LR I+IIPQDPVLFSG+LR NLDPF +Y D +WT+L+ LKD +
Sbjct: 1354 DGINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVS 1413
Query: 460 E-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
L+ EGG N SVGQRQL+CLARA++R ILVLDEATA VD +TD LIQ TIR
Sbjct: 1414 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIR 1473
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+F DCTVLTIAHRL+TIMD +V+V+D G
Sbjct: 1474 TQFEDCTVLTIAHRLNTIMDYTRVIVLDKG 1503
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Homo sapiens (taxid: 9606) |
| >sp|Q54U44|ABCCC_DICDI ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 198/497 (39%), Positives = 301/497 (60%), Gaps = 11/497 (2%)
Query: 60 LSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPS 119
L+ + +GIY + + + + R+ +F+ +R + IH ++F A++ P++FF P
Sbjct: 764 LTDDQNLGIYIGVGMASIIVTVVRTFSFFEYAVRAAHSIHHELFNALLKKPMSFFDQTPL 823
Query: 120 GRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRL 179
GRI+NRF++D+ +D ++ ++ ++ V LI+ + P IP+ + LF+ L
Sbjct: 824 GRIINRFTRDLDIIDNLIATSIAQFFTLMLSVLATLILISIIVPWLLIPLAPICILFFIL 883
Query: 180 SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTW 239
Y TS+ L+ +E +TRSP+F H + L+G+ +IRA+ + + + D +++ +
Sbjct: 884 QYFYRYTSRGLQRIEAITRSPIFNHFSETLNGVVSIRAYKKQQENILKNQKRLDDNNNCY 943
Query: 240 HLFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMR 297
N +DFL +++ S I I+ VGL ++ +++ + +
Sbjct: 944 LTLQAMNRWLGLRLDFLGNLIVFFSCIFITLKKDTISPSDVGLVLSYALSITSNLNQGVL 1003
Query: 298 QAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDE---NEIWPVLGKIEFQNTNVRYLSG- 353
QAA+ E M SV+R+ +Y + E +P D+ + WP+ G I+F N +RY G
Sbjct: 1004 QAADTETKMNSVERISQYIRGAVE---APQIIDDCRPSPDWPINGSIKFDNLVMRYREGL 1060
Query: 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKL 412
V+K + I KEKIGIVGRTGAGKSS++ A+FRL E EG I ID + L L
Sbjct: 1061 DPVLKGITCEIKAKEKIGIVGRTGAGKSSIVLALFRLIEASEGSISIDGENIAKFGLKDL 1120
Query: 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA-GLNMTVYEG 471
R N++IIPQDPVLFSGTLR+NLDPF + PD+ LW+ L +++L + GLN V E
Sbjct: 1121 RRNLAIIPQDPVLFSGTLRENLDPFNECPDHELWSILDDIQLSKVFKSTEEGLNSKVTEN 1180
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
G NFSVGQRQLI LARA++R ILVLDEATA+VD ++D LIQ TIR KF++CT+LTIAH
Sbjct: 1181 GENFSVGQRQLIVLARALLRKPKILVLDEATASVDGQSDSLIQATIRNKFSNCTILTIAH 1240
Query: 532 RLHTIMDSDKVLVMDSG 548
RL+TIMDSDK++V+D+G
Sbjct: 1241 RLNTIMDSDKIMVLDAG 1257
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8HXQ5|MRP1_BOVIN Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/510 (40%), Positives = 303/510 (59%), Gaps = 17/510 (3%)
Query: 46 IVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
IVN T Q H LS +GI + V + +S F S+ +H +
Sbjct: 1003 IVNGT--QEHTQVRLSVYGALGISQGITVFGYSMAVSIGGIF------ASRRLHLDLLHN 1054
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLF 165
V+ SP++FF PSG ++NRFSK++ VD ++P+ + + V GA I+ L P+
Sbjct: 1055 VLRSPISFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLATPMA 1114
Query: 166 S--IPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223
+ IP L L+Y F + + Y+ +S+ LK LE V+RSPV++H N L G+ IRA +
Sbjct: 1115 AVIIPPLGLIYFF--VQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQER 1172
Query: 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIGGKVGLA 281
+ + D D + ++ + N A ++ + C++ +++ + G VGL+
Sbjct: 1173 FIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFAVISRHSLSAGLVGLS 1232
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
V+ ++ + + W +R ++E+E ++++V+RL EY++ E E + WP +G++
Sbjct: 1233 VSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQDMAPPKDWPQVGRV 1292
Query: 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
EF++ +RY V+K++N+TI EK+GIVGRTGAGKSSL +FR+ E EG I I
Sbjct: 1293 EFRDYGLRYREDLDLVLKHINVTIDGGEKVGIVGRTGAGKSSLTLGLFRIKESAEGEIII 1352
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
DDI+ + L LR I+IIPQDPVLFSG+LR NLDPF +Y D +WT+L+ LK +
Sbjct: 1353 DDINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKGFVS 1412
Query: 460 E-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
LN EGG N SVGQRQL+CLARA++R ILVLDEATA VD +TD LIQ TIR
Sbjct: 1413 ALPDKLNHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIR 1472
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+F DCTVLTIAHRL+TIMD +V+V+D G
Sbjct: 1473 TQFDDCTVLTIAHRLNTIMDYTRVIVLDKG 1502
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. May protect milk against xenobiotics. Hydrolyzes ATP with low efficiency. Bos taurus (taxid: 9913) |
| >sp|Q9R1X5|MRP5_MOUSE Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 207/502 (41%), Positives = 298/502 (59%), Gaps = 24/502 (4%)
Query: 65 YIGIY-FSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRIL 123
Y IY S+ V L + I R F +R S +H ++F ++ SP+ FF T P+GRIL
Sbjct: 913 YASIYALSMAVMLILKAI-RGVVFVKGTLRASSRLHDELFRRILRSPMKFFDTTPTGRIL 971
Query: 124 NRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI---PVLILLYLFWRLS 180
NRFSKDM VD LP Q V+ V + + V P F + P+LIL L +S
Sbjct: 972 NRFSKDMDEVDVRLPFQAEMFIQNVILVFFCVGMIAGVFPWFLVAVGPLLILFSLLHIVS 1031
Query: 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWH 240
+ +R LK L+ +T+SP +H+ + + GL TI A+ + + + D + + +
Sbjct: 1032 RVLIR---ELKRLDNITQSPFLSHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFF 1088
Query: 241 LFVYTNMGFAYLIDFLCLLYLST--ILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQ 298
LF A +D + + ++T ++I GLA++ + L G+ Q+ +R
Sbjct: 1089 LFTCAMRWLAVRLDLISIALITTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRL 1148
Query: 299 AAEVENHMISVKRLVEYTK---LEPEG---NLSPNYEDENEIWPVLGKIEFQNTNVRYLS 352
A+E E SV+R+ Y K LE N +P ++ WP G++ F+N +RY
Sbjct: 1149 ASETEARFTSVERINHYIKTLSLEAPARIKNKAPPHD-----WPQEGEVTFENAEMRYRE 1203
Query: 353 G-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG-VIKIDDIDTEDVPLS 410
P V+K ++ TI PKEKIGIVGRTG+GKSSL A+FRL E+ G IKID I D+ L+
Sbjct: 1204 NLPLVLKKVSFTIKPKEKIGIVGRTGSGKSSLGMALFRLVELSGGCIKIDGIRISDIGLA 1263
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVY 469
LRS ++IIPQ+PVLFSGT+R NLDPF +Y + +W AL+ +K+ I + L V
Sbjct: 1264 DLRSKLAIIPQEPVLFSGTVRSNLDPFNQYTEDQIWDALERTHMKECIAQLPLKLESEVM 1323
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTI 529
E G NFSVG+RQL+C+ARA++R+ IL+LDEATA +D +TDLLIQ TIR+ FADCT+LTI
Sbjct: 1324 ENGDNFSVGERQLLCIARALLRHCKILILDEATAAMDTETDLLIQETIREAFADCTMLTI 1383
Query: 530 AHRLHTIMDSDKVLVMDSGVAV 551
AHRLHT++ SD+++V+ G V
Sbjct: 1384 AHRLHTVLGSDRIMVLAQGQVV 1405
|
Acts as a multispecific organic anion pump which can transport nucleotide analogs. Mus musculus (taxid: 10090) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/511 (37%), Positives = 300/511 (58%), Gaps = 19/511 (3%)
Query: 47 VNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106
+N T N H + IG++ +L + + + + AC SK +H ++ +
Sbjct: 1006 LNGTNNSSSH-----RDMRIGVFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNI 1060
Query: 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFS 166
+ +P+ FF T P+GRI+NRFS D+ VD++LP+ + ++G L++ P+F+
Sbjct: 1061 LRAPMRFFDTTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFA 1120
Query: 167 IPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVE 226
I ++ L L+ + Y+ TS+ L+ L+ VT+SP+++H + + GLP IRA + +
Sbjct: 1121 IIIIPLSILYISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLA 1180
Query: 227 EFDYHQDLHSSTWHLFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIGGKVGLAVTQ 284
+ D++ ++ +N A ++ + +++ S +L+ + G VG ++
Sbjct: 1181 WNEKQIDINQKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLTGDVVGFVLSN 1240
Query: 285 TMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEI--WPVLGKIE 342
+ + + W +R +E E ++++V+R+ EY +E E +P D+ WP G+I+
Sbjct: 1241 ALNITQTLNWLVRMTSEAETNIVAVERISEYINVENE---APWVTDKRPPADWPRHGEIQ 1297
Query: 343 FQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
F N VRY P V+K + I EK+G+VGRTGAGKSSL +FR+ E G I
Sbjct: 1298 FNNYQVRY--RPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQII 1355
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
ID ID + L LR ++IIPQDP+LFSG+LR NLDPF KY D +W AL+ L+ +
Sbjct: 1356 IDGIDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFV 1415
Query: 459 ME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
GL V EGG N S+GQRQL+CL RA++R + ILVLDEATA VD +TD LIQ TI
Sbjct: 1416 SGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTI 1475
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
RK+F+ CTV+TIAHRLHTIMDSDK++V+D+G
Sbjct: 1476 RKEFSQCTVITIAHRLHTIMDSDKIMVLDNG 1506
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 597 | ||||||
| 307177053 | 1370 | Probable multidrug resistance-associated | 0.812 | 0.354 | 0.568 | 1e-164 | |
| 347966549 | 1375 | AGAP001775-PA [Anopheles gambiae str. PE | 0.782 | 0.339 | 0.589 | 1e-164 | |
| 332017213 | 1393 | Putative multidrug resistance-associated | 0.829 | 0.355 | 0.553 | 1e-163 | |
| 350406706 | 1378 | PREDICTED: multidrug resistance-associat | 0.869 | 0.376 | 0.557 | 1e-163 | |
| 307177052 | 1861 | Probable multidrug resistance-associated | 0.827 | 0.265 | 0.545 | 1e-162 | |
| 340721339 | 1378 | PREDICTED: multidrug resistance-associat | 0.804 | 0.348 | 0.581 | 1e-162 | |
| 345491363 | 1410 | PREDICTED: multidrug resistance-associat | 0.820 | 0.347 | 0.555 | 1e-162 | |
| 383847295 | 1393 | PREDICTED: multidrug resistance-associat | 0.817 | 0.350 | 0.566 | 1e-162 | |
| 307196485 | 922 | Probable multidrug resistance-associated | 0.819 | 0.530 | 0.552 | 1e-161 | |
| 328787148 | 1392 | PREDICTED: multidrug resistance-associat | 0.839 | 0.359 | 0.544 | 1e-161 |
| >gi|307177053|gb|EFN66324.1| Probable multidrug resistance-associated protein lethal(2)03659 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/503 (56%), Positives = 374/503 (74%), Gaps = 18/503 (3%)
Query: 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRIL 123
+YI IY +++G+FV GISRS FY CM CS+ +H MF A++ + + FF TNPSGRIL
Sbjct: 819 TYIYIYTGIVLGIFVIGISRSLVFYKTCMTCSQRLHDMMFSALIRTGMRFFDTNPSGRIL 878
Query: 124 NRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAY 183
NRFSKDMG +DE+LPKA LDA Q M + G+LIV+ VNP+F +P++ + +F+ + K Y
Sbjct: 879 NRFSKDMGTIDELLPKACLDAGQMNMMMFGSLIVTCIVNPIFLVPIVFISIIFYWIRKVY 938
Query: 184 LRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFV 243
L+TSK++K LEG++RSPVFTHLNA L+GL TIRA+ A IL +EFD QD+H+ST + ++
Sbjct: 939 LKTSKNIKRLEGMSRSPVFTHLNATLNGLTTIRAYCAQDILKQEFDKLQDVHTSTVYAYI 998
Query: 244 YTNMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVTQTMTLMGVVQWAMRQAAE 301
T+ +++D C +++S SF F GG+VGLA+TQ M + ++QW MR++AE
Sbjct: 999 VTSAAVGFILDVFCFIFISLGTFSFLLFNQTFSGGEVGLAITQIMGITWIIQWGMRRSAE 1058
Query: 302 VENHMISVKRLVEYTKLEPEGNLS------PNYEDENEI--------WPVLGKIEFQNTN 347
V N M++V+R++EY +L PE NL + EN + WP G + F++
Sbjct: 1059 VTNQMMAVERVLEYIQLTPEPNLRDRGTYLKKKDKENLVLPDNAPKRWPEKGSVVFRDVY 1118
Query: 348 VRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTED 406
+RY P V+K LNI I+P EKIGIVGRTGAGKSSLI+A+FRLA+VEG+IKIDDI+T
Sbjct: 1119 MRYADEDPPVLKGLNIVIYPGEKIGIVGRTGAGKSSLISALFRLAKVEGIIKIDDINTGL 1178
Query: 407 VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI-MEGAGLN 465
+ L LR ISIIPQDPVLFSGTLR+NLDPF+++PD LW AL+EVELKD I + G GL
Sbjct: 1179 IALEDLRRKISIIPQDPVLFSGTLRRNLDPFDEFPDKDLWEALEEVELKDAIGINGNGLE 1238
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525
V++ G+N+SVGQRQL+CLARAI+RNN IL+LDEATANVDP+TD LIQRTIRKKFA CT
Sbjct: 1239 SRVFDRGSNYSVGQRQLVCLARAILRNNRILMLDEATANVDPQTDALIQRTIRKKFATCT 1298
Query: 526 VLTIAHRLHTIMDSDKVLVMDSG 548
+LT+AHRL+TIMDSDKVLVMD G
Sbjct: 1299 MLTVAHRLNTIMDSDKVLVMDKG 1321
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347966549|ref|XP_551022.4| AGAP001775-PA [Anopheles gambiae str. PEST] gi|333470010|gb|EAL38532.4| AGAP001775-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/473 (58%), Positives = 360/473 (76%), Gaps = 6/473 (1%)
Query: 83 RSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142
RS +FY +R S+ +H MF V + + F+ TNPSGRILNRFSKDMG+VDE+LPKAML
Sbjct: 857 RSISFYQTSVRASQNLHDAMFAGCVSTTMRFYDTNPSGRILNRFSKDMGSVDELLPKAML 916
Query: 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVF 202
DA+Q ++ + G L+V++ VNPLF +P+ +L +FW + + YL+TSK++K LEG+TRSPVF
Sbjct: 917 DASQIILSLCGTLVVTVLVNPLFLVPLALLGVVFWFVRRIYLKTSKNIKRLEGITRSPVF 976
Query: 203 THLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS 262
+HL+A L GLPTIRA GA L+ EFD HQD+H++++++F+ + F + +D LCL+++
Sbjct: 977 SHLSASLAGLPTIRAFGAQGELIREFDAHQDIHTASFYMFITASTAFGFALDLLCLIFVF 1036
Query: 263 TILISFFFFAD--IGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEP 320
++ SF G +VGLA+TQ M L G++QW +RQ+AEV N M+SV+RL+EY L P
Sbjct: 1037 IVVFSFLLVEQDTFGDRVGLAITQAMALTGMMQWGIRQSAEVANFMMSVERLLEYRDLAP 1096
Query: 321 EGNLSPNYEDE-NEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGA 378
E P N WP G+IEF++ RY G + V+++L+ I P+EK+GIVGRTGA
Sbjct: 1097 ERQ--PERPRALNAGWPAEGRIEFRSVTYRYFEGAQAVLRDLSFEIRPREKVGIVGRTGA 1154
Query: 379 GKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438
GKSSLI A+FRLA+VEG I++D IDT D+ L +LRS +SIIPQDPVLFSGTLR+NLDPFE
Sbjct: 1155 GKSSLIGALFRLAQVEGEIRLDGIDTADITLEQLRSKVSIIPQDPVLFSGTLRRNLDPFE 1214
Query: 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
YPD LW AL++VELK++ AGL M V GG+NFSVGQRQLICLARAI+RNN ILVL
Sbjct: 1215 DYPDAELWGALEQVELKELANTPAGLQMAVAAGGSNFSVGQRQLICLARAILRNNRILVL 1274
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
DEATANVDP TD LIQ TIR KFADCTVLTIAHRL+TIMDSD+VLVMD+G AV
Sbjct: 1275 DEATANVDPNTDRLIQETIRHKFADCTVLTIAHRLNTIMDSDRVLVMDAGQAV 1327
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017213|gb|EGI58001.1| Putative multidrug resistance-associated protein lethal(2)03659 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 290/524 (55%), Positives = 378/524 (72%), Gaps = 29/524 (5%)
Query: 49 NTINQHHHFHLLSTES---YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
NT N H + + E+ Y+ IY +++ +F GI+RS FY CM CS+ +H MF A
Sbjct: 826 NTTN-IHELNAIEDETVINYVYIYTGIVLTIFFLGITRSLVFYKTCMTCSQRLHDMMFSA 884
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLF 165
++ + + FF TNPSGRILNRFSKDMGA+DE+LPKA+LDA Q M + G+LI++ VNP+F
Sbjct: 885 LIRTGMRFFDTNPSGRILNRFSKDMGAIDELLPKAILDAGQMNMLMFGSLIMTCVVNPIF 944
Query: 166 SIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILV 225
+PV+I+ +F+ + K YL+TSK++K LEG+TRSPVFTHLNA L+GL TIRA+ A IL
Sbjct: 945 VVPVVIIGGIFYWIRKVYLKTSKNVKRLEGITRSPVFTHLNATLNGLTTIRAYCAQDILK 1004
Query: 226 EEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGKVGLAVT 283
EFD QD+H+ST ++++ T+ F + +D C + S + SF F GG+VGLA+T
Sbjct: 1005 HEFDKLQDIHTSTVYMYIVTSTAFGFSLDVFCFFFTSLVTFSFLLFDQSFSGGEVGLAIT 1064
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDEN----------- 332
Q M + G++QW MRQ+AEV N M++V+R++EY +L E PN D
Sbjct: 1065 QVMAMTGMIQWGMRQSAEVANQMMAVERVLEYIQLSAE----PNLRDRGAYVKKKDKYLA 1120
Query: 333 ------EIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA 385
+ WP G I+F+N +RY P V+K LNI I+P EKIGIVGRTGAGKSSLI+
Sbjct: 1121 LPSSVPKTWPDQGCIKFKNVYMRYSDEDPPVLKGLNIIIYPGEKIGIVGRTGAGKSSLIS 1180
Query: 386 AIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
A+FRLA+VEG+I+ID IDT + L LR ISIIPQDPVLFSGTLR+NLDPF+++PD L
Sbjct: 1181 ALFRLAKVEGIIEIDGIDTGSIALEDLRRKISIIPQDPVLFSGTLRRNLDPFDEFPDTDL 1240
Query: 446 WTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
W AL+EVELK+ ++ G GL V++ G+N+SVGQRQL+CLARAI+RNN IL+LDEATAN
Sbjct: 1241 WEALEEVELKEAVVSIGNGLESRVFDRGSNYSVGQRQLVCLARAILRNNRILMLDEATAN 1300
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
VDP TD LIQRTIRKKFA CT+LT+AHRL+TIMDSDKVLVMD G
Sbjct: 1301 VDPHTDALIQRTIRKKFATCTMLTVAHRLNTIMDSDKVLVMDKG 1344
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350406706|ref|XP_003487856.1| PREDICTED: multidrug resistance-associated protein 4-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/526 (55%), Positives = 379/526 (72%), Gaps = 7/526 (1%)
Query: 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTA 86
IL N+ Y NNT + + S S + IY ++IVGLF GI+RS
Sbjct: 807 ILVNEEETRHYYIAQAKLNATNNT--SIENLDISSMYSSMYIYTAIIVGLFCIGITRSLT 864
Query: 87 FYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQ 146
FY C+ CS+ +H F A++ + + FF TNPSGRILNRFSKDMGA+DE+LPKA+LDA Q
Sbjct: 865 FYKVCILCSQKLHDMAFSALIRTGMRFFDTNPSGRILNRFSKDMGAIDELLPKAILDAGQ 924
Query: 147 GVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLN 206
M + G+L VS +NPLF IP++ L +F+ + K +LRTSK++K +EG+TRSPVFTHLN
Sbjct: 925 ICMMMFGSLAVSCIINPLFLIPIVFLGTVFYWIRKVFLRTSKNIKRMEGMTRSPVFTHLN 984
Query: 207 ACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI 266
A L+GL TIRA+ A IL +EFD QD+H+ST ++++ + GF + +D C ++ S ++
Sbjct: 985 ATLNGLSTIRAYCAQDILRKEFDKLQDVHTSTVYMYIVASTGFGFSLDVFCFVFTSLVIF 1044
Query: 267 SFFFFAD--IGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNL 324
SF GG+VGLA+TQ M + G++QW MRQ AEV N M+SV+R++EYT+++ E L
Sbjct: 1045 SFLLLQQSFSGGEVGLAITQVMAMTGMIQWGMRQNAEVANQMMSVERVLEYTQIKIEKQL 1104
Query: 325 SPNYEDENEIWPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL 383
P + + WP G I F+N ++Y+ P V+K LN+ I+P EKIGIVGRTGAGKSSL
Sbjct: 1105 -PLPANAPKNWPTDGMIRFRNVYLKYVEDDPPVLKGLNLVINPGEKIGIVGRTGAGKSSL 1163
Query: 384 IAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443
I+A+FRLA++EGVI+ID IDT + L LR NISIIPQDPVLFSGTLR+NLDPF ++ D
Sbjct: 1164 ISALFRLAKIEGVIEIDGIDTGSICLEDLRRNISIIPQDPVLFSGTLRRNLDPFNEFTDK 1223
Query: 444 VLWTALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
LW L EVELKD +I G GL V + G+N+SVGQRQL+CLARAI+RNN IL+LDEAT
Sbjct: 1224 ALWEVLDEVELKDAVITAGTGLESRVLDRGSNYSVGQRQLVCLARAILRNNKILMLDEAT 1283
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
ANVDP+TD LIQ TIRKKFA CTVLTIAHRL+TIMDS+KVLVMD G
Sbjct: 1284 ANVDPQTDALIQHTIRKKFAKCTVLTIAHRLNTIMDSNKVLVMDKG 1329
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307177052|gb|EFN66323.1| Probable multidrug resistance-associated protein lethal(2)03659 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/519 (54%), Positives = 379/519 (73%), Gaps = 25/519 (4%)
Query: 55 HHFHLLSTES-------YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107
+H ++S ++ Y+ IY +++ +FV GISRS FY CM CS+ +H MF A++
Sbjct: 1294 NHLDIVSNDADMSKIMIYVYIYTGIVLSIFVIGISRSLFFYKTCMMCSQRLHDMMFSALI 1353
Query: 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI 167
++ + FF TNPSGRILNRFSKDMG +DE+LPKA LDA Q +M + G+LIV+ +NP+F +
Sbjct: 1354 HTGMRFFDTNPSGRILNRFSKDMGTIDEILPKACLDAGQIIMLMFGSLIVTCIINPIFLV 1413
Query: 168 PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEE 227
P++ + +F+ + K YL+TSK++K LEG++RSPVFTHLNA L+GL TIRA+ A IL +E
Sbjct: 1414 PIVFISIIFYWIRKVYLKTSKNIKRLEGMSRSPVFTHLNATLNGLTTIRAYCAQDILKQE 1473
Query: 228 FDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVTQT 285
FD QD+H+ST + ++ T+ +++D C +++S SF F GG+VGLA+TQ
Sbjct: 1474 FDKLQDVHTSTVYAYIVTSAAVGFILDVFCFIFISLGTFSFLLFNQTFSGGEVGLAITQI 1533
Query: 286 MTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPE------GNLSPNYEDENEI----- 334
M + ++QW MR++AEV N M++V+R++EY +L PE G + EN +
Sbjct: 1534 MGITWIIQWGMRRSAEVTNQMMAVERVLEYVQLAPEPKLRNRGTYLKKKDKENLVLPDNA 1593
Query: 335 ---WPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390
WP G + F++ +RY P V+K LNI I+P EKIGIVGRTGAGKSSLI+A+FRL
Sbjct: 1594 PKRWPEKGSVVFRDVYMRYADEDPHVLKGLNIVIYPGEKIGIVGRTGAGKSSLISALFRL 1653
Query: 391 AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQ 450
A+VEG+IKIDDI+T + L LR ISIIPQDPVLFSGTLR+NLDPF+++PD LW AL+
Sbjct: 1654 AKVEGIIKIDDINTGLIALEDLRRKISIIPQDPVLFSGTLRRNLDPFDEFPDKDLWEALE 1713
Query: 451 EVELKDMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
EVELKD + + G GL V++ G+N+SVGQRQL+CLARAI+RNN IL+LDEATANVDP T
Sbjct: 1714 EVELKDAVGINGNGLESRVFDRGSNYSVGQRQLVCLARAILRNNRILMLDEATANVDPHT 1773
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
D LIQRTIRKKFA CT+LT+AHRL+TIMDSDKVLVMD G
Sbjct: 1774 DALIQRTIRKKFATCTMLTVAHRLNTIMDSDKVLVMDKG 1812
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340721339|ref|XP_003399080.1| PREDICTED: multidrug resistance-associated protein 4-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/485 (58%), Positives = 365/485 (75%), Gaps = 5/485 (1%)
Query: 68 IYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFS 127
+Y ++IVGLF GI+RS FY C+ CS+ +H F A++ + + FF TNPSGRILNRFS
Sbjct: 846 VYTAIIVGLFCIGITRSLTFYKVCILCSQRLHDMAFSALIRTGMRFFDTNPSGRILNRFS 905
Query: 128 KDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187
KDMGA+DE+LPKA+LDA Q M + G+L VS +NPLF IP++ L +F+ + K +LRTS
Sbjct: 906 KDMGAIDELLPKAILDAGQICMMMFGSLAVSCIINPLFLIPIVFLGTVFYWIRKVFLRTS 965
Query: 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247
K++K +EG+TRSPVFTHLNA L+GL TIRA+ A IL +EFD QD+H+ST ++++ +
Sbjct: 966 KNIKRMEGMTRSPVFTHLNATLNGLSTIRAYCAQDILRKEFDKLQDVHTSTVYMYIVAST 1025
Query: 248 GFAYLIDFLCLLYLSTILISFFFFAD--IGGKVGLAVTQTMTLMGVVQWAMRQAAEVENH 305
F + +D C ++ S ++ SF GG+VGLA+TQ M + G++QW MRQ AEV N
Sbjct: 1026 SFGFSLDVFCFVFTSLVIFSFLLLQQSFSGGEVGLAITQVMAMTGMIQWGMRQNAEVANQ 1085
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL-SGPRVIKNLNITI 364
M+SV+R++EYT+++ E L P + + WP G I F+N ++Y+ P V+K LN+ I
Sbjct: 1086 MMSVERVLEYTQIKIEKQL-PLPANAPKNWPTDGMIRFRNVYMKYVEDDPPVLKGLNLVI 1144
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424
+P EKIGIVGRTGAGKSSLI+A+FRLA++EGVI+ID IDT + L LR NISIIPQDPV
Sbjct: 1145 NPGEKIGIVGRTGAGKSSLISALFRLAKIEGVIEIDGIDTGSICLEDLRRNISIIPQDPV 1204
Query: 425 LFSGTLRKNLDPFEKYPDYVLWTALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLI 483
LFSGTLR+NLDPF ++ D LW L EVELKD +I G GL V + G+N+SVGQRQL+
Sbjct: 1205 LFSGTLRRNLDPFNEFTDKALWEVLDEVELKDAVITAGTGLESRVLDRGSNYSVGQRQLV 1264
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543
CLARAI+RNN IL+LDEATANVDP+TD LIQ TIRKKFA CTVLTIAHRL+TIMDS+KVL
Sbjct: 1265 CLARAILRNNKILMLDEATANVDPQTDALIQHTIRKKFAKCTVLTIAHRLNTIMDSNKVL 1324
Query: 544 VMDSG 548
VMD G
Sbjct: 1325 VMDKG 1329
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345491363|ref|XP_001604413.2| PREDICTED: multidrug resistance-associated protein 4-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/511 (55%), Positives = 372/511 (72%), Gaps = 21/511 (4%)
Query: 59 LLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNP 118
L +YI +Y +++ +F G+ RS FY+ C+ C++ IH +F A++ + + FF TNP
Sbjct: 851 LYPRNNYIYVYSAVVFSIFFIGMIRSITFYNICLSCNQRIHDLVFGALIRAKMRFFDTNP 910
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWR 178
SGRILNRFSKDMGA+DE+LPKAMLDA Q ++ + GA++V+ +VNP+F +P+ + +F+
Sbjct: 911 SGRILNRFSKDMGAIDELLPKAMLDAGQIILAMVGAIVVACAVNPIFLVPLCAIAIVFFF 970
Query: 179 LSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
+ + YL+TSK++K LEG+TRSPVFTHLNA L+GL TIRA+ A IL +EFD QD+H+S+
Sbjct: 971 IRRVYLKTSKNVKRLEGMTRSPVFTHLNATLNGLSTIRAYNAETILKKEFDKFQDVHTSS 1030
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGKVGLAVTQTMTLMGVVQWAM 296
W++F+ T+ F + +D C ++ + + SF D GG+VGLA+TQ M L G+VQW M
Sbjct: 1031 WYMFIATSSAFGFSLDICCFIFTTLVTFSFLLLEDNFSGGQVGLAITQVMALTGMVQWGM 1090
Query: 297 RQAAEVENHMISVKRLVEYTKLEPEGNLSPN-----------YEDENEI------WPVLG 339
RQ+AEV N ++SV+R++EYT L PE NL E E I WP G
Sbjct: 1091 RQSAEVTNQLMSVERVLEYTDLTPEPNLRDKGMLMKKKKKAAREIEESIAETPKDWPSHG 1150
Query: 340 KIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIK 398
IEF+ +RY P V+K L + I P EK+GIVGRTGAGKSSLI+A+FRLA V+GVI+
Sbjct: 1151 CIEFKGVYMRYAEEEPPVLKGLTLRIKPTEKVGIVGRTGAGKSSLISALFRLAMVDGVIE 1210
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD-M 457
ID IDT + L LR NISIIPQDPVLFSGTLR+NLDPF ++ D +LW L+EVELKD +
Sbjct: 1211 IDGIDTGTIALEDLRKNISIIPQDPVLFSGTLRRNLDPFNEFSDQLLWAVLEEVELKDAV 1270
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
I G GL+ V + G+N+SVGQRQLICLARAI+RNN +L+LDEATANVDP+TD LIQRTI
Sbjct: 1271 IASGHGLDNRVLDRGSNYSVGQRQLICLARAILRNNRVLMLDEATANVDPQTDALIQRTI 1330
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
R KFA CTVLT+AHRL+TIMDSDKVLVMD G
Sbjct: 1331 RTKFAPCTVLTVAHRLNTIMDSDKVLVMDRG 1361
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383847295|ref|XP_003699290.1| PREDICTED: multidrug resistance-associated protein 4-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/505 (56%), Positives = 369/505 (73%), Gaps = 17/505 (3%)
Query: 61 STESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSG 120
S +Y+ IY +++VGLF GI+RS FY C+ CS+ +H F A++ + + FF TNPSG
Sbjct: 840 SMYNYMYIYTAIVVGLFCIGITRSLTFYEVCIVCSQKLHDMAFSALIRTGMRFFDTNPSG 899
Query: 121 RILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS 180
RILNRFSKDMG +DE+LPKA+LDA Q M + G+L VS VNPLF IP++ L +F+ +
Sbjct: 900 RILNRFSKDMGTIDELLPKAVLDAGQICMMMFGSLAVSCIVNPLFLIPIVFLGTVFYWIR 959
Query: 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWH 240
K YL+TSK++K LEG++RSPVFTHLNA L+GL TIRA+ A IL +EFD QD+H+ST +
Sbjct: 960 KVYLKTSKNIKRLEGMSRSPVFTHLNATLNGLTTIRAYCAQDILKKEFDKLQDVHTSTVY 1019
Query: 241 LFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGKVGLAVTQTMTLMGVVQWAMRQ 298
++V ++ GF + +D C ++ S + SF GG+VGLA+TQ M + G++QW MRQ
Sbjct: 1020 MYVVSSSGFGFSLDIFCFVFTSLVTFSFLLLEQSFSGGEVGLAITQVMAMTGMIQWGMRQ 1079
Query: 299 AAEVENHMISVKRLVEYTKLEPEGNLSPN----YEDENEI---------WPVLGKIEFQN 345
AE N M++V+R++EYT + PE NL + E +I WP G I F+N
Sbjct: 1080 NAEAANQMMAVERVLEYTNIPPEPNLRDRGKFAKKSEKQIALPANAPKNWPKDGMIRFRN 1139
Query: 346 TNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDT 404
+RY V+K LN+ I+P EKIGIVGRTGAGKSSLI+A+FRLA+VEGVI+IDDIDT
Sbjct: 1140 VYMRYAEEELPVLKGLNLVINPGEKIGIVGRTGAGKSSLISALFRLAKVEGVIEIDDIDT 1199
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD-MIMEGAG 463
+ L LR +ISIIPQDPVLFSGTLR+NLDPF ++ D LW L+EVELKD +++ G G
Sbjct: 1200 GSICLEDLRRHISIIPQDPVLFSGTLRRNLDPFNEFSDAALWEVLEEVELKDAVVISGNG 1259
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
L V + G+N+SVGQRQL+CLARAI+RNN IL+LDEATANVDP+TD LIQ TIR+KF
Sbjct: 1260 LESRVLDRGSNYSVGQRQLVCLARAILRNNKILMLDEATANVDPQTDALIQNTIRRKFTK 1319
Query: 524 CTVLTIAHRLHTIMDSDKVLVMDSG 548
CTVLTIAHRL+TIMDSDKVLVMD G
Sbjct: 1320 CTVLTIAHRLNTIMDSDKVLVMDKG 1344
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307196485|gb|EFN78037.1| Probable multidrug resistance-associated protein lethal(2)03659 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/507 (55%), Positives = 370/507 (72%), Gaps = 18/507 (3%)
Query: 60 LSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPS 119
LS +YI IY +++G+F GI+RS FY CM CS+ +H MF A++ + + FF TNPS
Sbjct: 367 LSMHTYIYIYTGIVLGIFFLGITRSLFFYKTCMTCSQRLHDLMFSALIRTGMRFFDTNPS 426
Query: 120 GRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRL 179
GRILNRFSKDMG +DE+LPKA+LDA Q M + GA+IV+ +NP+F PV I+ ++F+ +
Sbjct: 427 GRILNRFSKDMGTIDELLPKAILDAGQMNMVMLGAVIVTCVINPIFLAPVTIIGFIFYWI 486
Query: 180 SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTW 239
K YL+TSK++K LE + RSPVFTHLNA L+GL TIRA+ A IL EFD QD H+ST
Sbjct: 487 RKVYLKTSKNIKRLEAIMRSPVFTHLNATLNGLTTIRAYCAQDILKREFDKLQDQHTSTT 546
Query: 240 HLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGKVGLAVTQTMTLMGVVQWAMR 297
++++ T+ F + +D C ++ S + SF + GG VGLA+TQ M + ++QW MR
Sbjct: 547 YMYIVTSTAFGFFLDVFCFIFTSLVTFSFLILNESFSGGAVGLAITQVMAITQIIQWGMR 606
Query: 298 QAAEVENHMISVKRLVEYTKLEPEGNLSP-----NYEDENEI---------WPVLGKIEF 343
Q+AEV N M++V+R++EY +L+PE NL +D+ + WP G ++F
Sbjct: 607 QSAEVTNQMMAVERVLEYIQLKPEPNLKDRGLCLKTKDKEYVALPAPIPSNWPNKGYVKF 666
Query: 344 QNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
++ +RY P V+K LNI I +K+GIVGRTGAGKSSLIAA+FRLA++EGV++ID +
Sbjct: 667 KDVFMRYADDHPPVLKGLNIVIQSGQKVGIVGRTGAGKSSLIAALFRLAKIEGVVEIDGV 726
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-G 461
DT + L LR ISIIPQDPVLFSGTLR+NLDPF+++PD LW AL+EVELKD ++ G
Sbjct: 727 DTGTIALDDLRRKISIIPQDPVLFSGTLRRNLDPFDEFPDCNLWAALEEVELKDAVVTVG 786
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521
GL V++ G+N+SVGQRQL+CLARAI+RNN IL+LDEATANVDP TD LIQRTIRKKF
Sbjct: 787 NGLESRVFDRGSNYSVGQRQLVCLARAILRNNRILMLDEATANVDPYTDALIQRTIRKKF 846
Query: 522 ADCTVLTIAHRLHTIMDSDKVLVMDSG 548
A CT+LT+AHRL+TIMDSDKVLVMD G
Sbjct: 847 ATCTMLTVAHRLNTIMDSDKVLVMDKG 873
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787148|ref|XP_623460.3| PREDICTED: multidrug resistance-associated protein 4-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/520 (54%), Positives = 378/520 (72%), Gaps = 19/520 (3%)
Query: 46 IVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
I N+T+ ++ + S Y+ IY ++VG+F GI+RS +FY C+ CS+ +H F A
Sbjct: 826 ITNDTLIEN--LDISSMYKYLYIYTIIVVGIFCIGITRSLSFYKVCILCSQKLHDMAFSA 883
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLF 165
++ + + FF NPSGRILNRFSKDMGA+DE+LPKA+LDA Q M + G+L VS +NPLF
Sbjct: 884 LIRTGMRFFDINPSGRILNRFSKDMGAIDELLPKAILDAGQICMMMVGSLTVSCIINPLF 943
Query: 166 SIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILV 225
IP++ L +F+ + K +L+TSK++K +EG+TRSPVFTHLNA L+GL TIRA+ A IL
Sbjct: 944 LIPIVFLGTVFYWIRKVFLKTSKNIKRMEGITRSPVFTHLNATLNGLSTIRAYCAQDILK 1003
Query: 226 EEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGKVGLAVT 283
+EFD QD+H+ST +++V + F + +D C +++S + SF GG+VGLA+T
Sbjct: 1004 KEFDKLQDVHTSTVYMYVTASTAFGFSLDVFCFIFISVVTFSFLLLEQSFSGGEVGLAIT 1063
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPN----YEDENEI----- 334
Q M + G++QW MRQ AEV N ++SV+R++EYT++ PE NL + E +I
Sbjct: 1064 QVMAMTGMIQWGMRQNAEVANQLMSVERVLEYTQVIPEPNLRDRGKFAKKTEKQIALPAN 1123
Query: 335 ----WPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389
WP G I F++ ++Y+ P ++K LN+ I+P EKIGIVGRTGAGKSSLIAA+FR
Sbjct: 1124 APKNWPTDGMIRFRSVYLKYVEEDPPILKGLNLIINPGEKIGIVGRTGAGKSSLIAALFR 1183
Query: 390 LAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL 449
LA++EGV++ID IDT + L LR NISIIPQDPVLFSGTLR+NLDPF ++ D +W L
Sbjct: 1184 LAKIEGVLEIDGIDTGSICLEDLRRNISIIPQDPVLFSGTLRRNLDPFNEFTDKAIWEVL 1243
Query: 450 QEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+EVELKD ++ G GL V + G+N+SVGQ+QL+CLARAI+RNN IL+LDEATANVDP+
Sbjct: 1244 EEVELKDAVVTTGTGLESRVLDRGSNYSVGQKQLVCLARAILRNNKILMLDEATANVDPQ 1303
Query: 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
TD LIQ TIRKKFA CTVLTIAHRL+TIMDSDKVLVMD G
Sbjct: 1304 TDALIQHTIRKKFAKCTVLTIAHRLNTIMDSDKVLVMDKG 1343
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 597 | ||||||
| FB|FBgn0032026 | 1355 | CG7627 [Drosophila melanogaste | 0.805 | 0.354 | 0.545 | 9.5e-137 | |
| FB|FBgn0038740 | 1362 | CG4562 [Drosophila melanogaste | 0.798 | 0.350 | 0.543 | 5.4e-134 | |
| FB|FBgn0051792 | 1318 | CG31792 [Drosophila melanogast | 0.802 | 0.363 | 0.550 | 1.1e-133 | |
| FB|FBgn0263316 | 1316 | Mrp4 "Multidrug resistance pro | 0.815 | 0.370 | 0.536 | 1.2e-131 | |
| FB|FBgn0051793 | 1307 | CG31793 [Drosophila melanogast | 0.797 | 0.364 | 0.532 | 5e-131 | |
| FB|FBgn0032908 | 1225 | CG9270 [Drosophila melanogaste | 0.810 | 0.395 | 0.521 | 1.3e-126 | |
| UNIPROTKB|F1PNA2 | 1326 | ABCC4 "Uncharacterized protein | 0.802 | 0.361 | 0.524 | 2.3e-126 | |
| FB|FBgn0010549 | 1290 | l(2)03659 "lethal (2) 03659" [ | 0.844 | 0.390 | 0.497 | 2.9e-126 | |
| UNIPROTKB|F1P043 | 1309 | ABCC4 "Uncharacterized protein | 0.829 | 0.378 | 0.502 | 6.1e-126 | |
| UNIPROTKB|F1MUC1 | 1304 | ABCC4 "Uncharacterized protein | 0.832 | 0.381 | 0.508 | 1.5e-124 |
| FB|FBgn0032026 CG7627 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
Identities = 268/491 (54%), Positives = 359/491 (73%)
Query: 63 ESYIGIYFSLIVGLFV-AGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGR 121
++YI F++I L + ++RS F++ M+ S +H MF + + + FF+TNPSGR
Sbjct: 813 DTYI---FTVITVLTILVTVARSFLFFNLAMKASIRLHNSMFRGITRAAMYFFNTNPSGR 869
Query: 122 ILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSK 181
ILNRFSKDMG VDE+LP M+D Q + ++G +IV VNPLF IP ++L +F++L
Sbjct: 870 ILNRFSKDMGQVDEILPAVMMDVIQIFLALAGIVIVIAVVNPLFLIPTVVLGIIFYQLRT 929
Query: 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHL 241
YL+TS+ +K +E +TRSPV++HL A L GL TIRA GA ++L EFD +QD+HSS +++
Sbjct: 930 FYLKTSRDVKRMEAITRSPVYSHLAASLTGLSTIRAFGAQRVLEAEFDNYQDMHSSAFYM 989
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADI-GGKVGLAVTQTMTLMGVVQWAMRQAA 300
F+ T+ F Y +D C++Y++ I +SFF F GG VGLA+TQ M + G+VQW MRQ+A
Sbjct: 990 FISTSRAFGYWLDCFCVIYIAIITLSFFIFPPANGGDVGLAITQAMGMTGMVQWGMRQSA 1049
Query: 301 EVENHMISVKRLVEYTKLEPEGNL-SPNYEDENEIWPVLGKIEFQNTNVRYLSGPR---V 356
E+EN M +V+R+VEY +EPEG L +P + + WP GKI F ++RY P+ V
Sbjct: 1050 ELENTMTAVERVVEYEDIEPEGALEAPADKKPPKSWPEQGKIVFDELSLRYTPDPKSENV 1109
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNI 416
+K+L+ I PKEK+GIVGRTGAGKSSLI A+FRL+ +G + ID DT ++ L LRS I
Sbjct: 1110 LKSLSFVIKPKEKVGIVGRTGAGKSSLINALFRLSYNDGSVLIDKRDTSEMGLHDLRSKI 1169
Query: 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNF 475
SIIPQ+PVLFSGT+R NLDPF++Y D LW +L+EV+LK+++ + +GL + EGGTNF
Sbjct: 1170 SIIPQEPVLFSGTMRYNLDPFDEYSDDKLWRSLEEVKLKEVVADLPSGLQSKITEGGTNF 1229
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535
SVGQRQL+CLARAI+R N ILV+DEATANVDP+TD LIQ TIR KF +CTVLTIAHRLHT
Sbjct: 1230 SVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLIQTTIRNKFKECTVLTIAHRLHT 1289
Query: 536 IMDSDKVLVMD 546
IMDSDKVLVMD
Sbjct: 1290 IMDSDKVLVMD 1300
|
|
| FB|FBgn0038740 CG4562 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 264/486 (54%), Positives = 352/486 (72%)
Query: 69 YFSLI-VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFS 127
YF+ I V + + + RS F+ MR S +H MF+ V + + FF+TNPSGRILNRFS
Sbjct: 801 YFTGINVSVIIFSLVRSMLFFYLAMRSSTTLHNTMFQGVTRAAMHFFNTNPSGRILNRFS 860
Query: 128 KDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187
KD+G VDE+LP M+D Q + + G ++V +N + + + L+ +F+ L YL TS
Sbjct: 861 KDLGQVDEILPSVMMDVMQIFLAIVGIVVVLCIINVWYILATVFLVIVFYLLRVFYLSTS 920
Query: 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247
+ +K LE VTRSP+++HL+A L+GL TIRA GA K L+ EFD +QD+HSS +++F+ T+
Sbjct: 921 RDVKRLEAVTRSPIYSHLSASLNGLATIRAFGAQKELIAEFDNYQDMHSSGYYMFLATSR 980
Query: 248 GFAYLIDFLCLLYLSTILISFFFFA-DIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHM 306
F Y +D +C++Y++ I +SFF F+ + GG VGLA+TQ M + G+VQW MRQ+AE+EN M
Sbjct: 981 AFGYWLDCVCVVYIAVITLSFFLFSPENGGDVGLAITQAMGMTGMVQWGMRQSAELENTM 1040
Query: 307 ISVKRLVEYTKLEPEGNLS--PNYEDENEIWPVLGKIEFQNTNVRYL---SGPRVIKNLN 361
+V+R+VEY LEPEG+ PN + + WP GKI F + +++Y + V+++LN
Sbjct: 1041 TAVERVVEYEDLEPEGDFESKPNKKPPKD-WPEDGKIVFDDLSLKYFPDKAADYVLRSLN 1099
Query: 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421
I I EK+GIVGRTGAGKSSLI A+FRL+ EG I ID DT D+ L LRS ISIIPQ
Sbjct: 1100 IAIEGCEKVGIVGRTGAGKSSLINALFRLSYNEGAILIDRRDTNDLGLHDLRSKISIIPQ 1159
Query: 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQR 480
+PVLFSGT+R NLDPF++Y D LW +L+EV+LK ++ + +GL + EGGTNFSVGQR
Sbjct: 1160 EPVLFSGTMRYNLDPFDEYSDAKLWESLEEVKLKQVVADLPSGLQSKISEGGTNFSVGQR 1219
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSD 540
QL+CLARAI+R N ILV+DEATANVDP+TD LIQ TIR KF DCTVLTIAHRLHT+MDSD
Sbjct: 1220 QLVCLARAILRENRILVMDEATANVDPQTDALIQTTIRNKFKDCTVLTIAHRLHTVMDSD 1279
Query: 541 KVLVMD 546
KVLVMD
Sbjct: 1280 KVLVMD 1285
|
|
| FB|FBgn0051792 CG31792 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
Identities = 267/485 (55%), Positives = 342/485 (70%)
Query: 68 IYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFS 127
IY + V + I RS F++ MR S +H MF + + + FF+ NP+G ILNRFS
Sbjct: 748 IYMLITVLSIMVTIKRSFLFFNLAMRASIQLHNSMFRGISRASMYFFNKNPAGSILNRFS 807
Query: 128 KDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187
KDMG VDE+LP ++ Q + G +IV VNPLF IP L + + L YL+TS
Sbjct: 808 KDMGQVDEMLPTIIMTVIQDFLLFGGNIIVIAIVNPLFLIPALAFGIVIYYLRSFYLKTS 867
Query: 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247
+K LE TRSPV++H A L+GL TIRA GA IL EFD +QD+HSS ++F+ T+
Sbjct: 868 LDVKRLEASTRSPVYSHFAASLNGLSTIRAFGAGSILEAEFDGYQDMHSSASYMFISTSR 927
Query: 248 GFAYLIDFLCLLYLSTILISFFFFA-DIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHM 306
FAY +D C+L+++ I +SFF F VGLA+TQ M L G VQW +RQ+AE+EN M
Sbjct: 928 AFAYWMDIFCVLFIAMITLSFFIFPPSSAADVGLAITQAMGLTGTVQWTVRQSAELENTM 987
Query: 307 ISVKRLVEYTKLEPEGNLSPNYEDE-NEIWPVLGKIEFQNTNVRY---LSGPRVIKNLNI 362
ISV+R++EY ++EPEG L + + +E WP GKIEF ++RY L V+K+L+
Sbjct: 988 ISVERMIEYEEIEPEGPLEATADKKPHESWPEQGKIEFVELSLRYEPYLKSESVLKSLSF 1047
Query: 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
I PKEK+GIVGRTGAGKSSLI A+FRL+ +G ++IDD DT D+ L LRS ISIIPQ+
Sbjct: 1048 VIKPKEKVGIVGRTGAGKSSLINALFRLSYNDGSVRIDDKDTNDMGLHDLRSKISIIPQE 1107
Query: 423 PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQ 481
PVLFSGT+R NLDPF++Y D LW AL+EVELKD++ A GL + EGG+NFSVGQRQ
Sbjct: 1108 PVLFSGTVRHNLDPFDEYSDDRLWCALEEVELKDVVASVATGLETKITEGGSNFSVGQRQ 1167
Query: 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDK 541
L+CLARAI+R+N ILV+DEATANVDP+TD LIQ TIR KF +CTVLT+AHRLHTIMDSD+
Sbjct: 1168 LVCLARAILRDNRILVMDEATANVDPQTDALIQATIRNKFRECTVLTVAHRLHTIMDSDR 1227
Query: 542 VLVMD 546
VLVMD
Sbjct: 1228 VLVMD 1232
|
|
| FB|FBgn0263316 Mrp4 "Multidrug resistance protein 4 ortholog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 265/494 (53%), Positives = 349/494 (70%)
Query: 60 LSTESYIGIYFSLI-VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNP 118
++T+ YF+ + V + V I R+ FY MR S +H M++ + + + FF+TNP
Sbjct: 769 INTDPQDMYYFAALNVAVVVFTIVRTMLFYKMAMRSSTQLHNAMYQGITRAAMYFFNTNP 828
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWR 178
SGRILNRFSKD+G +DEVLP MLD Q + + G ++V NP + I L L +F+
Sbjct: 829 SGRILNRFSKDLGQLDEVLPSVMLDVVQLFLTLLGIIVVICITNPYYLILTLALAIIFYY 888
Query: 179 LSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
+ + YL+TS+ +K LE V RSP+++HL+A + GLPTIRA GA K L+ EFD QDLHSS
Sbjct: 889 IREFYLKTSRDVKRLEAVARSPIYSHLSATITGLPTIRALGAQKELIAEFDNLQDLHSSG 948
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIG-GKVGLAVTQTMTLMGVVQWAMR 297
++ F+ TN F Y +D C LY+ I++++F G+VGLA+TQ M + G+VQWAMR
Sbjct: 949 YYTFLATNRAFGYYLDCFCTLYIVIIILNYFINPPQSPGEVGLAITQAMGMTGMVQWAMR 1008
Query: 298 QAAEVENHMISVKRLVEYTKLEPEGNL-SPNYEDENEIWPVLGKIEFQNTNVRYLSGPR- 355
Q+AE+EN M +V+R+VEY ++EPEG S + + WP G+I ++ +RY P+
Sbjct: 1009 QSAELENTMTAVERVVEYDEIEPEGEFDSREGKKPSPSWPEKGEIIAEDLCLRYFPDPQA 1068
Query: 356 --VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413
V+K LN I P EK+GIVGRTGAGKSSLI A+FRL+ EG+I ID+ DT D+ L LR
Sbjct: 1069 KYVLKALNFRIRPCEKVGIVGRTGAGKSSLINALFRLSYNEGIITIDERDTADMGLFDLR 1128
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGG 472
S ISIIPQ+PVLFSG++R NLDPFE+Y D LW AL+EV+LK +I E GL + EGG
Sbjct: 1129 SKISIIPQEPVLFSGSMRYNLDPFEEYNDAKLWDALEEVKLKPLISELPNGLQSKISEGG 1188
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532
+NFSVGQRQL+CLARAI+R N +LV+DEATANVDP+TD LIQ TIR KF DCTVLTIAHR
Sbjct: 1189 SNFSVGQRQLVCLARAILRENRVLVMDEATANVDPQTDALIQATIRSKFRDCTVLTIAHR 1248
Query: 533 LHTIMDSDKVLVMD 546
L+TIMDSD+VLVMD
Sbjct: 1249 LNTIMDSDRVLVMD 1262
|
|
| FB|FBgn0051793 CG31793 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 260/488 (53%), Positives = 347/488 (71%)
Query: 69 YFSLI-VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFS 127
YF+ I VGL + + R+ F++ M S +H MF+ + + L FF TNPSGRILNRF+
Sbjct: 773 YFTAINVGLVICALLRTLLFFNITMHSSTELHNTMFQGLSRTALYFFHTNPSGRILNRFA 832
Query: 128 KDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPV--LILLYLFWRLSKAYLR 185
D+G VDEV+P MLD Q + ++G + V NP + I ++L + +WR YL+
Sbjct: 833 NDLGQVDEVMPAVMLDCIQIFLTLTGIICVLCVTNPWYLINTFAMMLAFYYWR--DFYLK 890
Query: 186 TSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYT 245
TS+ +K LE V RSP+++H +A L GLPTIRA GA + L+ ++D +QDLHSS ++ FV T
Sbjct: 891 TSRDVKRLEAVARSPMYSHFSATLVGLPTIRAMGAQQTLIGQYDNYQDLHSSGYYTFVST 950
Query: 246 NMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVTQTMTLMGVVQWAMRQAAEVE 303
+ F Y +D C+ Y+ ++++ FF + G++GLA+TQ + + G+VQW MRQ+AE+E
Sbjct: 951 SRAFGYYLDLFCVAYVISVILHNFFNPPLHNAGQIGLAITQALGMTGMVQWGMRQSAELE 1010
Query: 304 NHMISVKRLVEYTKLEPEGNL-SPNYEDENEIWPVLGKIEFQNTNVRY---LSGPRVIKN 359
N M SV+R++EY L+PEG+ SP + + WP GK+ ++ ++RY + P V+K
Sbjct: 1011 NAMTSVERVLEYKDLDPEGDFNSPAEKQPPKSWPKEGKLVTKDLSLRYEPDTNSPCVLKG 1070
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISII 419
L+ TI P EK+GIVGRTGAGKSSLI A+FRL+ +G I ID +DT D+ L LRS ISII
Sbjct: 1071 LSFTIQPMEKVGIVGRTGAGKSSLINALFRLSYNDGAILIDSLDTNDIGLHDLRSKISII 1130
Query: 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVG 478
PQ+PVLFSGT+R NLDPFE+YPD LW AL++V LK+ I E +GL + EGGTNFSVG
Sbjct: 1131 PQEPVLFSGTMRYNLDPFEQYPDDKLWKALEDVHLKEEISELPSGLQSIISEGGTNFSVG 1190
Query: 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538
QRQL+CLARAI+R N ILV+DEATANVDP+TD LIQ TIR KF DCTVLTIAHRL+TIMD
Sbjct: 1191 QRQLVCLARAILRENRILVMDEATANVDPQTDALIQATIRNKFKDCTVLTIAHRLNTIMD 1250
Query: 539 SDKVLVMD 546
SDKVLVMD
Sbjct: 1251 SDKVLVMD 1258
|
|
| FB|FBgn0032908 CG9270 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1225 (436.3 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 257/493 (52%), Positives = 335/493 (67%)
Query: 61 STESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSG 120
ST+ YI + + L + + R+ F+S M S +H MF+ V + L FF NPSG
Sbjct: 683 STDIYI--FSGINAALVIFALLRTLLFFSMAMHSSTQLHNTMFQGVSRTALYFFHANPSG 740
Query: 121 RILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS 180
RILNRF+ D+G VDE+LP MLD Q + +SG + V NP + I + + F L
Sbjct: 741 RILNRFAMDLGQVDEILPAVMLDCIQIFLTISGIIGVLCITNPWYLINTITMFLAFHFLR 800
Query: 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWH 240
YL TS+ LK LE + RSP+++H +A L+GL TIRA A +L +E+D +QD+HSS ++
Sbjct: 801 TFYLSTSRDLKRLEAIARSPMYSHFSATLNGLSTIRAMEAQDLLTKEYDNYQDIHSSGYY 860
Query: 241 LFVYTNMGFAYLIDFLCLLY-LSTILISFFFF-ADIGGKVGLAVTQTMTLMGVVQWAMRQ 298
F+ TN F Y +D C+ Y +S L+S+F D G++GL +TQ M++ G VQW MRQ
Sbjct: 861 TFLSTNRAFGYYLDLFCVAYVISVTLMSYFNPPVDNPGQIGLVITQAMSMTGTVQWGMRQ 920
Query: 299 AAEVENHMISVKRLVEYTKLEPEGNL-SPNYEDENEIWPVLGKIEFQNTNVRYLSGP--- 354
+AE+EN M SV+R++EY LE EG SP+ + WP G I + ++RY P
Sbjct: 921 SAELENSMTSVERVLEYRHLEAEGEFESPDDKKPPMNWPQEGLISAEQLSLRYNPDPKAD 980
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRS 414
RV+K+LN I P+EKIGIVGRTGAGKSSLI A+FRL+ EG + ID+ D + L LRS
Sbjct: 981 RVLKSLNFIIMPREKIGIVGRTGAGKSSLINALFRLSYNEGSLVIDNTDILGIGLHDLRS 1040
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGT 473
ISIIPQ+PVLFSGTLR NLDPFE+Y D LW AL+EV LKD + E GL V EGG+
Sbjct: 1041 KISIIPQEPVLFSGTLRCNLDPFEQYADEKLWEALEEVHLKDEVSELPNGLESVVAEGGS 1100
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
N+SVGQRQL+CLARAI+R N ILV+DEATANVDP+TD LIQ TIR+KF DCTVLTIAHRL
Sbjct: 1101 NYSVGQRQLVCLARAILRENRILVMDEATANVDPQTDALIQSTIRRKFRDCTVLTIAHRL 1160
Query: 534 HTIMDSDKVLVMD 546
+TI+DSD+V+V+D
Sbjct: 1161 NTIIDSDRVMVLD 1173
|
|
| UNIPROTKB|F1PNA2 ABCC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 256/488 (52%), Positives = 344/488 (70%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
Y+GIY L V + GI+RS + + S+ +H KMFE+++ +P+ FF TNP GRILN
Sbjct: 765 YLGIYSGLTVATVLFGIARSLLMFYVLVNSSQTLHNKMFESILRAPVLFFDTNPIGRILN 824
Query: 125 RFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184
RFSKD+G +D++LP LD Q +QV G + V+++V P +IP+L L +F+ L + +L
Sbjct: 825 RFSKDIGHMDDLLPLTFLDFLQTFLQVLGVVGVAVAVIPWIAIPLLPLAVIFFILRRYFL 884
Query: 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVY 244
TS+ +K LE +RSPVF+HL++ L GL TIRA+ A + E FD HQDLHS W LF+
Sbjct: 885 ATSRDVKRLESTSRSPVFSHLSSSLQGLWTIRAYKAEERFQELFDAHQDLHSEAWFLFLT 944
Query: 245 TNMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVTQTMTLMGVVQWAMRQAAEV 302
T+ FA +D +C +++ + A G+VGLA++ +TLMG+ QW++RQ+AEV
Sbjct: 945 TSRWFAVRLDAICAMFVIVVAFGSLILAKTVDAGQVGLALSYALTLMGMFQWSVRQSAEV 1004
Query: 303 ENHMISVKRLVEYTKLEPEGNLSP-NYEDENE-IWPVLGKIEFQNTNVRY-LSGPRVIKN 359
EN MISV+R++EYT LE E +P Y+ WP G I F N N Y L GP V+K+
Sbjct: 1005 ENMMISVERVMEYTDLEKE---APWEYQKRPPPTWPQEGTIVFDNVNFTYSLDGPLVLKH 1061
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISII 419
L I +EK+GIVGRTGAGKSSLIAA+FRL+E EG I ID I T ++ L LR +SII
Sbjct: 1062 LTALIKSREKVGIVGRTGAGKSSLIAALFRLSEPEGKIWIDRILTTEIGLHDLRKKMSII 1121
Query: 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG-LNMTVYEGGTNFSVG 478
PQ+PVLF+GT+RKNLDPF ++ D LW AL EV+LKD + + G L+ + E G+NFSVG
Sbjct: 1122 PQEPVLFTGTMRKNLDPFNEHTDEELWNALTEVQLKDAVEDLPGKLDTELAESGSNFSVG 1181
Query: 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538
QRQL+CLARAI+R N IL++DEATANVDP+TD LIQ+ IR+KFA CTVLTIAHRL+TI+D
Sbjct: 1182 QRQLVCLARAILRKNRILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIID 1241
Query: 539 SDKVLVMD 546
SDK++V+D
Sbjct: 1242 SDKIMVLD 1249
|
|
| FB|FBgn0010549 l(2)03659 "lethal (2) 03659" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 255/513 (49%), Positives = 353/513 (68%)
Query: 42 TFFKIVNNTINQHHHFHLLSTESYIGIY-FSLIVGLFVA-GISRSTAFYSACMRCSKGIH 99
T++ +T H + ++S + +Y ++LI+ L V +S S ++ + S +H
Sbjct: 732 TYWVKKESTAAGHGEMEDMESKS-MDVYKYTLIIILSVIMNLSSSFLLFNIAKKASIRLH 790
Query: 100 KKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSL 159
+F V + + FFS N G ILNRF+KDM VDEVLP ++D Q + ++G +IV
Sbjct: 791 NTIFNRVTRADMHFFSINKHGSILNRFTKDMSQVDEVLPVVLVDVMQIALWLAGIIIVIA 850
Query: 160 SVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHG 219
+VNPL +P L+L +F+ L YL+TS+ LK +E + RSPV++HL A L+GL TIRA
Sbjct: 851 NVNPLLLVPTLMLSVIFYHLRNLYLKTSRDLKRVEAINRSPVYSHLAASLNGLTTIRALD 910
Query: 220 AAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD-IGGKV 278
A ++L +EFD +QD HSS + +++ T+ F Y ++ +C++Y+S I +SFF F G V
Sbjct: 911 AQRVLEKEFDSYQDAHSSAFFMYISTSQAFGYCMNCICVIYISIITLSFFAFPPGNGADV 970
Query: 279 GLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNL-SPNYEDENEIWPV 337
GL +TQ M L+ +VQW +RQ AE+EN M +V+R+VEY +EPEG L +P+ + + WP
Sbjct: 971 GLVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYESIEPEGMLEAPDDKKPPKTWPE 1030
Query: 338 LGKIEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE 394
G+I F+ N+RY + V+K+L+ I P+EK+GIVGRTGAGKSSLI A+FRL+ +
Sbjct: 1031 QGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLINALFRLSYTD 1090
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVEL 454
G + ID DT + L LR ISIIPQ+PVLFSGT+R NLDPF++Y D LW L+EV+L
Sbjct: 1091 GSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEKLWGCLEEVKL 1150
Query: 455 KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
K+++ + GL + EGGTNFSVGQRQL+CLARAI+R N ILV+DEATANVDP+TD LI
Sbjct: 1151 KEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLI 1210
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
Q TIR KF DCTVLTIAHRLHTI+DSDKV+VMD
Sbjct: 1211 QATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMD 1243
|
|
| UNIPROTKB|F1P043 ABCC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
Identities = 253/503 (50%), Positives = 342/503 (67%)
Query: 48 NNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107
NN N+ H L Y+GIY L V + GI RS + + + +H KMF++++
Sbjct: 734 NNGANETEHLDLTF---YLGIYAGLTVATILFGIIRSLLVFQVLVNSGQTLHNKMFKSIL 790
Query: 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI 167
+P+ FF NP GRILNRFSKD+G +D++LP LD Q ++Q+ G + V+++V P I
Sbjct: 791 KAPVLFFDRNPIGRILNRFSKDIGHLDDLLPLTFLDFVQTLLQIFGVVAVAVAVIPWILI 850
Query: 168 PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEE 227
P++ L LF L + +L TS+ +K LE TRSPVF+HL++ L GL TIRA A +
Sbjct: 851 PLIPLFILFIFLRRYFLDTSRDIKRLESTTRSPVFSHLSSSLQGLWTIRALKAEDRFQKL 910
Query: 228 FDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVTQT 285
FD HQDLHS W LF+ T+ FA +D +C +++ + A G+VGLA++
Sbjct: 911 FDAHQDLHSEAWFLFLTTSRWFAVRLDAICAIFVIVVAFGSLLLAKTLNAGQVGLALSYA 970
Query: 286 MTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345
+TLMG QW +RQ+AEVEN MISV+R++EYT LE E N E WP G I F+N
Sbjct: 971 ITLMGTFQWGVRQSAEVENLMISVERVMEYTDLEKEAPWETNKHPPPE-WPSHGMIAFEN 1029
Query: 346 TNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDT 404
N Y L GP V+++L++ I P+EK+GIVGRTGAGKSSLIAA+FRLAE EG I ID T
Sbjct: 1030 VNFTYSLDGPLVLRHLSVVIKPEEKVGIVGRTGAGKSSLIAALFRLAEPEGRIWIDKYLT 1089
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG- 463
++ L LR ISIIPQ+PVLF+GT+RKNLDPF +Y D LW AL+EV+LK+ + +
Sbjct: 1090 SELGLHDLRKKISIIPQEPVLFTGTMRKNLDPFNEYTDEELWNALEEVQLKEAVEDLPNK 1149
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
+ + E G+NFSVGQRQL+CLARA+++ N IL++DEATANVDP+TD IQ+TIR+KFA
Sbjct: 1150 METQLAESGSNFSVGQRQLVCLARAVLKKNRILIIDEATANVDPRTDEFIQKTIREKFAH 1209
Query: 524 CTVLTIAHRLHTIMDSDKVLVMD 546
CTVLTIAHRL+TI+DSD+++V+D
Sbjct: 1210 CTVLTIAHRLNTIIDSDRIMVLD 1232
|
|
| UNIPROTKB|F1MUC1 ABCC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 258/507 (50%), Positives = 350/507 (69%)
Query: 47 VNNTIN-QHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
+N T+N Q + L+ Y+GIY L + GI RS + + S+ +H +MFE+
Sbjct: 724 LNVTVNGQGNVTEKLNLNWYLGIYSGLTASTVLFGIVRSLLVFFVLVSSSQTLHNQMFES 783
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLF 165
++ +P+ FF NP GRILNRFSKD+G +D++LP LD Q +QV G + V+++V P
Sbjct: 784 ILRAPVLFFDRNPIGRILNRFSKDIGHMDDLLPLTYLDFIQTFLQVIGVVGVAVAVIPWI 843
Query: 166 SIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILV 225
+IP++ L +F+ L + +L TS+ +K LE TRSPVF+HL++ L GL TIRA+ A +
Sbjct: 844 AIPLVPLGIVFFVLRRYFLETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEQRFQ 903
Query: 226 EEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADI--GGKVGLAVT 283
E FD HQDLHS W LF+ T+ FA +D +C +++ + A G+VGLA++
Sbjct: 904 ELFDSHQDLHSEAWFLFLTTSRWFAVRLDAICAVFVIVVAFGSLILAKTLDAGQVGLALS 963
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSP-NYEDEN-EIWPVLGKI 341
+TLMG+ QW +RQ+AEVEN MISV+R++EYT LE E +P Y+ WP G I
Sbjct: 964 YALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKE---APWEYQKRPLPSWPHEGVI 1020
Query: 342 EFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
F N N Y L GP V+K+L I KEK+GIVGRTGAGKSSLIAA+FRL+E EG I ID
Sbjct: 1021 IFDNVNFSYSLDGPLVLKHLTALIKSKEKVGIVGRTGAGKSSLIAALFRLSEPEGKIWID 1080
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
I T ++ L LR +SIIPQ+PVLF+GT+RKNLDPF ++ D LW AL+EV+LK+ I +
Sbjct: 1081 KILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHSDEELWNALEEVQLKEAIED 1140
Query: 461 GAG-LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G ++ + E G+NFSVGQRQL+CLARAI+R N IL++DEATANVDP+TD LIQ+ IR+
Sbjct: 1141 LPGKMDTELAESGSNFSVGQRQLVCLARAILRKNRILIIDEATANVDPRTDELIQKKIRE 1200
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMD 546
KFA CTVLTIAHRL+TI+DSDK++V+D
Sbjct: 1201 KFAHCTVLTIAHRLNTIIDSDKIMVLD 1227
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O15439 | MRP4_HUMAN | No assigned EC number | 0.5194 | 0.8073 | 0.3637 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 597 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-123 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-118 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-113 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-104 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-98 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-95 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-89 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-87 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-70 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-66 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-62 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-56 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-55 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-54 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-49 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-49 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-49 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-48 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-46 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-46 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-43 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-43 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-42 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-41 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-39 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-39 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-39 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-37 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-37 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-37 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-34 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-34 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-34 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-34 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-33 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-32 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-31 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-29 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-29 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-28 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-25 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-25 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-24 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-23 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-23 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-22 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-21 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-19 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-18 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-18 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-18 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-17 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-17 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-16 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-16 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-16 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-16 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-15 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-15 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-15 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-15 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-14 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-14 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-14 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-14 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-14 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-13 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-13 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-13 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-13 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-13 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-12 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-12 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-11 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-11 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-10 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-10 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-10 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-10 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-09 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-09 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 9e-09 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-08 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-08 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-07 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 4e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-06 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-06 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-06 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-05 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 5e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-04 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 3e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.002 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 0.002 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.003 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.003 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.004 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 396 bits (1018), Expect = e-123
Identities = 207/507 (40%), Positives = 300/507 (59%), Gaps = 31/507 (6%)
Query: 71 SLIVGLFVA-GISRSTAFYSACMRCSKG-------IHKKMFEAVVYSPLAFFSTNPSGRI 122
SL + ++ A GI + A + M S G +H+ + + SP++FF PSG +
Sbjct: 1005 SLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNL 1064
Query: 123 LNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFS--IPVLILLYLFWRLS 180
+NRFSK++ VD ++P + + V GALIV L P+ + IP L LLY F +
Sbjct: 1065 VNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFF--VQ 1122
Query: 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWH 240
+ Y+ +S+ LK LE V+RSPV++H N L G+ IRA + + + D D + ++
Sbjct: 1123 RFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182
Query: 241 LFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIG------GKVGLAVTQTMTLMGVV 292
+ N A ++ + C++ + + FA I G VGL+V+ ++ + +
Sbjct: 1183 PSIVANRWLAVRLECVGNCIVLFAAL------FAVISRHSLSAGLVGLSVSYSLQVTFYL 1236
Query: 293 QWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS 352
W +R ++E+E ++++V+RL EY++ E E WP G++EF+N +RY
Sbjct: 1237 NWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRE 1296
Query: 353 G-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS 410
V++++N+TIH EK+GIVGRTGAGKSSL +FR+ E EG I ID ++ + L
Sbjct: 1297 DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH 1356
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI-MEGAGLNMTVY 469
LR I+IIPQDPVLFSG+LR NLDPF +Y D +W AL+ LK + L+
Sbjct: 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTI 529
EGG N SVGQRQL+CLARA++R ILVLDEATA VD +TD LIQ TIR +F DCTVLTI
Sbjct: 1417 EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTI 1476
Query: 530 AHRLHTIMDSDKVLVMDSGVAVVSSFG 556
AHRL+TIMD +V+V+D G V+ FG
Sbjct: 1477 AHRLNTIMDYTRVIVLDKG--EVAEFG 1501
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 350 bits (900), Expect = e-118
Identities = 132/216 (61%), Positives = 164/216 (75%), Gaps = 3/216 (1%)
Query: 339 GKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
G IEF+N ++RY P V+KN++ +I P EK+GIVGRTG+GKSSL+ A+FRL E+ G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
I ID +D + L LRS ISIIPQDPVLFSGT+R NLDPF +Y D LW AL+ V LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ GL+ V EGG N SVGQRQL+CLARA++R + ILVLDEATA+VDP+TD LIQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
TIR+ F DCTVLTIAHRL TI+DSD++LV+D G V
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 369 bits (948), Expect = e-113
Identities = 211/562 (37%), Positives = 311/562 (55%), Gaps = 53/562 (9%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
Y IY L G + + S + + +K +H M +++ +P++FF TNP GRI+N
Sbjct: 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIIN 1014
Query: 125 RFSKDMGAVDE-VLPKAMLDAAQGVMQVSG-ALIVSLSVNPLFSI-PVLILLYLFWRLSK 181
RF+KD+G +D V + Q +S LI +S L++I P+L+L Y
Sbjct: 1015 RFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFY------G 1068
Query: 182 AYL---RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
AYL T++ +K L+ +TRSPV+ L+GL TIRA+ A +D +++ +
Sbjct: 1069 AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA-------YDRMAEINGRS 1121
Query: 239 WH---LFVYTNMG----FAYLIDFL--CLLYLSTILISFFFF--------ADIGGKVGLA 281
F NM A ++ L +++L+ SF A +GL
Sbjct: 1122 MDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTA---SFAVMQNGRAENQAAFASTMGLL 1178
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
++ + + ++ +R A+ EN + +V+R+ Y L E L WP G I
Sbjct: 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSI 1238
Query: 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
+F++ +RY P V+ L+ I P EK+GIVGRTGAGKSS++ A+FR+ E+E G I I
Sbjct: 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D D L LR + IIPQ PVLFSGT+R NLDPF ++ D LW +L+ LKD+I
Sbjct: 1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIR 1358
Query: 460 EGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ GL+ V E G NFSVGQRQL+ LARA++R + ILVLDEATA VD +TD LIQ+TIR
Sbjct: 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV--------VSSFGFFFSKDLIE--GTV 568
++F CT+L IAHRL+TI+D D++LV+D+G V +S+ G FSK +++ G
Sbjct: 1419 EEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSK-MVQSTGAA 1477
Query: 569 SAKVLSSRKRREKEDRIGESQS 590
+A+ L S EDR+ +S
Sbjct: 1478 NAQYLRSLVFGGDEDRLAREES 1499
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-104
Identities = 204/505 (40%), Positives = 300/505 (59%), Gaps = 32/505 (6%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
YI +Y L G + S S+ + +K +H M +++ +P+ FF TNP+GR++N
Sbjct: 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVIN 1011
Query: 125 RFSKDMGAVDEVLPKAMLDAAQGVMQV--SGALIVSLSVNPLFSI-PVLILLYLFWRLSK 181
RFSKD+G +D + M + Q+ + ALI ++S L++I P+LIL Y +
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLY-- 1069
Query: 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA----AKILVEEFDYH-----Q 232
Y TS+ ++ L+ VTRSP++ L+GL +IRA+ A AKI + D +
Sbjct: 1070 -YQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128
Query: 233 DLHSSTWHLFVYTNMG--FAYLI-DFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
+ S+ W +G +L F L + + FA +GL ++ T+ +
Sbjct: 1129 NTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAE--NQAGFAST---MGLLLSYTLNIT 1183
Query: 290 GVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEI---WPVLGKIEFQNT 346
++ +RQA++ EN + SV+R+ Y L E + + N WP G I+F++
Sbjct: 1184 TLLSGVLRQASKAENSLNSVERVGNYIDLPSE---ATAIIENNRPVSGWPSRGSIKFEDV 1240
Query: 347 NVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDT 404
++RY G P V+ L+ + P EK+G+VGRTGAGKSS++ A+FR+ E+E G I IDD D
Sbjct: 1241 HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV 1300
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA-G 463
L+ LR +SIIPQ PVLFSGT+R N+DPF ++ D LW AL+ +KD+I G
Sbjct: 1301 AKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
L+ V EGG NFSVGQRQL+ LARA++R + ILVLDEATA+VD +TD LIQRTIR++F
Sbjct: 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420
Query: 524 CTVLTIAHRLHTIMDSDKVLVMDSG 548
CT+L IAHRL+TI+D DK+LV+ SG
Sbjct: 1421 CTMLVIAHRLNTIIDCDKILVLSSG 1445
|
Length = 1495 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 326 bits (837), Expect = 6e-98
Identities = 169/505 (33%), Positives = 278/505 (55%), Gaps = 19/505 (3%)
Query: 61 STESY--IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNP 118
T +Y IY + G R + SK +H++M +V+ +P+A +T
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWR 178
+GRILNRF+KDM +D++LP + D Q + V GA+ V + P I + + +F
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 179 LSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
L +LRTS+ LK LE RSP+F+HL L GL TIRA G F +LH++
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTI-LISFFFFADIGGKVGLAVTQTMTLMGVVQWAMR 297
W L++ T F ID + + + + I+ D G+VG+ +T M ++ +QWA+
Sbjct: 1101 WFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVN 1160
Query: 298 QAAEVENHMISVKRLVEYTKLEPEG----------NLSPNYEDEN----EIWPVLGKIEF 343
+ +V+ M SV R+ ++ L E LS EN + WP G+++
Sbjct: 1161 SSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220
Query: 344 QNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
Q +Y R V+++L+ ++ +++G++GRTG+GKS+L++A+ RL EG I+ID +
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGV 1280
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA 462
V L R +IPQ +FSGT RKNLDP+E++ D +W +EV LK +I +
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340
Query: 463 G-LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521
L+ + +GG S G +QL+CLAR+I+ IL+LDE +A++DP T +I++T+++ F
Sbjct: 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400
Query: 522 ADCTVLTIAHRLHTIMDSDKVLVMD 546
++CTV+ HR+ +++ + LV++
Sbjct: 1401 SNCTVILSEHRVEALLECQQFLVIE 1425
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = 5e-95
Identities = 184/534 (34%), Positives = 287/534 (53%), Gaps = 51/534 (9%)
Query: 60 LSTESYIGIYFSLIVGLFVAGIS-RSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNP 118
LS +Y+ +Y IV L + R Y A R S+ +H+ + +V ++FF T P
Sbjct: 995 LSAATYLYVYL-GIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTP 1053
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWR 178
GRILNRFS+D+ +D LP + L Q + + +++V+ + P + ++ YL++R
Sbjct: 1054 LGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYR 1113
Query: 179 LSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
L + Y ++ ++ ++ V +SPVFT L L G TI A+G A ++++E D+ S
Sbjct: 1114 LMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSC 1173
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGK-----------VGLAVTQTMT 287
+L N ++FL S I+++ + G V L++T M
Sbjct: 1174 SYLENVANRWLGVRVEFL-----SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQ 1228
Query: 288 LMGVVQWAMRQAAEVENHMISVKRLVEYT----------------KLEPEGNLSPNYEDE 331
+ W +RQ A VE M SV+RL+ YT LE ++ +
Sbjct: 1229 TTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGT 1288
Query: 332 NEIWPV-----------LGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAG 379
I P G + F+ +RY G P V++ ++ I P+EK+GIVGRTG+G
Sbjct: 1289 VVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 380 KSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF- 437
KS+L+ R+ EV G I+++ + L +LR S+IPQDPVLF GT+R+N+DPF
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408
Query: 438 EKYPDYVLWTALQEVELKDMIM-EGAGLNMTVYEGGTNFSVGQRQLICLARAIV-RNNVI 495
E V W AL+ V L++ + E G++ V EGG+N+SVGQRQL+C+ARA++ + +
Sbjct: 1409 EASSAEV-WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467
Query: 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
+++DEATAN+DP D IQ T+ F+ TV+TIAHRLHT+ DK++VMD G
Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGA 1521
|
Length = 1560 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 4e-89
Identities = 138/495 (27%), Positives = 237/495 (47%), Gaps = 12/495 (2%)
Query: 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRIL 123
+ + L + V +S + + + +FE ++ PL+FF SG ++
Sbjct: 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLI 112
Query: 124 NRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAY 183
+R + D+ AV ++ ++ ++ + G+L++ S++ ++ +L++L L +
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 184 LRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFV 243
R S+ L + L L G+ I+A GA ++ F+ +
Sbjct: 173 ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232
Query: 244 YTNMGFAYLIDFLCLLYLSTILISFFFFADIG----GKVGLAVTQTMTLMGVVQWAMRQA 299
A L+ L L +L F G G + + + L+ +
Sbjct: 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVV 292
Query: 300 AEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKN 359
+ ++ + +RL E EPE + + + +G IEF+N + Y V+K+
Sbjct: 293 SLLQRASAAAERLFELLDEEPEVE-----DPPDPLKDTIGSIEFENVSFSYPGKKPVLKD 347
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISI 418
++ +I P EK+ IVG +G+GKS+LI + RL + G I ID ID D+ L LR I I
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407
Query: 419 IPQDPVLFSGTLRKNLDPFEKY-PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFS 476
+ QDP+LFSGT+R+N+ D + AL+ + I G + V E G N S
Sbjct: 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536
GQRQ + +ARA++RN IL+LDEAT+ +D +T+ LIQ ++K T L IAHRL TI
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
Query: 537 MDSDKVLVMDSGVAV 551
++D+++V+D+G V
Sbjct: 528 KNADRIIVLDNGRIV 542
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 2e-87
Identities = 118/216 (54%), Positives = 153/216 (70%), Gaps = 19/216 (8%)
Query: 335 WPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV 393
WP G+IE +N +VRY P V+KN++ + EKIGIVGRTGAGKS+LI A+FR E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 394 -EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
EG I+ID ID +PL LRS+++IIPQDP LFSGT+R NLDPF++Y D ++ AL+
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
V EGG N S GQRQL+CLARA+++ +LVLDEATA++D TD L
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
IQ+TIR++F + T+LTIAHRL TI+D DK+LVMD+G
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 227 bits (579), Expect = 3e-70
Identities = 110/216 (50%), Positives = 151/216 (69%), Gaps = 3/216 (1%)
Query: 339 GKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
G+I+ + VRY + + V+K++ I P +K+GI GRTG+GKSSL A FR+ ++ +G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
I ID ID +PL LRS +SII QDP+LFSG++R NLDP K D LW AL+ +LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
M+ GL+ V EGG NFSVGQRQL CLARA VR + IL++DEATA++D T+ ++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ FAD TV+TIAHR+ TI+D+D VLV+ G+ V
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILV 233
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 1e-66
Identities = 89/213 (41%), Positives = 128/213 (60%), Gaps = 3/213 (1%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
G+IEF+N N Y V+K++N +I P E + IVG TGAGK++LI + R + + G I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWT-ALQEVELKD 456
ID ID D+ LRS I ++ QD LFSGT+ +N+ A +E D
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 457 MIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
IM+ G + + E G N S G+RQL+ +ARA++R+ IL+LDEAT+N+D +T+ LIQ
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ K T + IAHRL TI ++DK+LV+D G
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 1e-62
Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 42/210 (20%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
IEF+N + Y P+ V+K++++TI P EK+ IVG +G+GKS+L+ + RL + G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
ID +D D+ L LR NI+ +PQDP LFSGT+R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
S GQRQ I +ARA++R+ IL+LDEAT+ +DP+T+ LI +R
Sbjct: 97 ----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR 140
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
TV+ IAHRL TI D+D+++V+D G
Sbjct: 141 ALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 1e-56
Identities = 134/538 (24%), Positives = 247/538 (45%), Gaps = 62/538 (11%)
Query: 43 FFKIVNNTINQHHHFHLLSTESYIGIYFSL-IVGLFVAGISRSTAFYSACMRCSKGIHKK 101
F +IV + + L+ + I L + + + R+ R + +
Sbjct: 176 FSQIVIDKVLPDASRSTLT---VLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGR 232
Query: 102 MFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVL----PKAMLDAAQGVMQVSGALIV 157
F ++ PL++F G I++R ++ + E L ++D + + A++
Sbjct: 233 FFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFAL--IFLAVMF 289
Query: 158 SLSVN----PLFSIPVLILL-YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGL 212
S L +IP+ +L+ +F L + K+ K +E + L + G+
Sbjct: 290 LYSWKLTLIVLAAIPLNVLITLIFQPLLRR-----KTRKLIEESAE--QQSFLVETIKGI 342
Query: 213 PTIRAHGAAKILVEEFD-YHQDLHSSTW-----HLFVYTNMGFAYLIDFLCLLYLSTILI 266
T++A A ++D + + L + T + + +L+ IL+
Sbjct: 343 ETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILV 402
Query: 267 --------SFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVE--YT 316
F + G +T+ L + + + ++++RL + T
Sbjct: 403 LEGELTLGQLVAFNMLAGYFISPITR---LSQLWT-------DFQQAKVALERLGDILDT 452
Query: 317 KLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGR 375
E EG+ + + + G+IEF+N + RY P V+++L++ I P EK+ IVGR
Sbjct: 453 PPEQEGDKTLI-----HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 376 TGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434
+G+GKS+L+ + L + + G I +D +D D+ L+ LR + + QDP LFSG++R+N+
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI 567
Query: 435 ---DPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIV 490
+P + + A Q + I G + V EGG N S GQRQ + LARA++
Sbjct: 568 ALGNPEATDEE--IIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625
Query: 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
IL+LDEAT+ +DP+T+ +I + + + TV+ IAHRL TI +D+++V+D G
Sbjct: 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 3e-55
Identities = 83/212 (39%), Positives = 138/212 (65%), Gaps = 2/212 (0%)
Query: 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
G++ ++ +Y G V++N++ +I P +++G++GRTG+GKS+L++A RL EG I
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
+ID + VPL K R +IPQ +FSGT RKNLDP+ K+ D +W +EV LK +
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSV 120
Query: 458 IMEGAG-LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
I + G L+ + +GG S G +QL+CLAR+++ IL+LDE +A++DP T +I++T
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+++ FADCTV+ HR+ +++ + LV++
Sbjct: 181 LKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 6e-54
Identities = 127/534 (23%), Positives = 223/534 (41%), Gaps = 70/534 (13%)
Query: 54 HHHFHLLSTESYIGIYFSLIVGLFVAGIS---RSTAFYSACMRCSKGIHKKMFEAVVYSP 110
+S + + L++ L + R Y A + + + + + +
Sbjct: 28 TKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLG 87
Query: 111 LAFFSTNPSGRILNRFSKDMGAVDE----VLPKAMLDAAQGVMQVSGALIVSL----SVN 162
AF + P+G + + ++ LP+ L + IV L ++
Sbjct: 88 PAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFL-----------SAIVPLLILIAIF 136
Query: 163 PLFSIPVLILLY------LFWRL--SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPT 214
LILL LF L A + K L ++ H L GL T
Sbjct: 137 FFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLS-----GHFLDRLRGLET 191
Query: 215 IRAHGAAKILVEEFDYH-QDLHSSTWHLFVYTNMGFAYL----IDFLCLLYLSTILISFF 269
+RA G + E +D +T + + A+L ++F YLS L++ +
Sbjct: 192 LRAFGRTEATEERIRKDSEDFRKATMSV-----LRIAFLSSAVLEFFA--YLSIALVAVY 244
Query: 270 F-FADIG-GKVGLA-----------VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYT 316
F +G G + L Q + +G + A E + +L
Sbjct: 245 IGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF-FHAAAAGEA-----AADKLFTLL 298
Query: 317 KLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRT 376
+ + E +I +N + RY G + +LN+TI + +VG +
Sbjct: 299 ESPVATP--GSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGAS 356
Query: 377 GAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435
GAGKS+L+ + LA +G I+++ ID D+ R IS + Q+P LF+GT+R+N+
Sbjct: 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416
Query: 436 PFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
D + AL + L + + + GL+ + EGG S GQ Q + LARA++
Sbjct: 417 LARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476
Query: 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+L+LDE TA++D +T+ +I + +++ TVL I HRL D+D+++V+D+G
Sbjct: 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-49
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 6/213 (2%)
Query: 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+EF+N RY GP V++++++ I E + +VG +G+GKS+L+ I R +V G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL--DPFEKYPDYVLWTALQEVELKD 456
ID D D L+ LR I ++ QD LF+ T+ +N+ + V A + +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE-EAARAANAHE 119
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
IME G + + E G S GQRQ I +ARA++++ IL+LDEAT+ +D +++ L+Q
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + T IAHRL TI ++D+++V++ G
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 3e-49
Identities = 129/504 (25%), Positives = 222/504 (44%), Gaps = 40/504 (7%)
Query: 72 LIVGLFV-AGISRSTAFYS---ACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFS 127
+++GL V GI + Y + + I +MFE ++ P++FF P+G +L+R +
Sbjct: 59 VVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRIT 118
Query: 128 KDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187
D V A + + + V G IV L + ++ V+++L + L + +
Sbjct: 119 FDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178
Query: 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247
+ + + V T L G ++ G FD + N
Sbjct: 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSN-----------RNR 227
Query: 248 GFAY-----------LIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAM 296
A + + L L+ +L F A G T +T M + +
Sbjct: 228 RLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
Query: 297 RQAAEVENHM----ISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS 352
+ V M + + L PE + I G +EF+N RY
Sbjct: 288 KSLTNVNAPMQRGLAAAESLFTLLDSPPEKD-----TGTRAIERARGDVEFRNVTFRYPG 342
Query: 353 GPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLS 410
R + ++++ I P E + +VGR+G+GKS+L+ I R E + G I +D D D L+
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402
Query: 411 KLRSNISIIPQDPVLFSGTLRKNL--DPFEKYPDYVLWTALQEVELKDMIME-GAGLNMT 467
LR ++++ QD VLF+ T+ N+ E+ + AL +D + + GL+
Sbjct: 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
+ E G S GQRQ + +ARA++++ IL+LDEAT+ +D +++ L+Q + + T L
Sbjct: 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTL 522
Query: 528 TIAHRLHTIMDSDKVLVMDSGVAV 551
IAHRL TI +D+++VMD G V
Sbjct: 523 VIAHRLSTIEKADRIVVMDDGRIV 546
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 5e-49
Identities = 81/215 (37%), Positives = 125/215 (58%), Gaps = 11/215 (5%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IEF+N Y G V+K+++ TI +K+ IVG +G+GKS+++ +FR +V G I I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQEVEL 454
D D +V L LR I ++PQD VLF+ T+ N+ +Y D + A + ++
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQI 116
Query: 455 KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D IM G + V E G S G++Q + +ARAI++N IL+LDEAT+ +D T+ I
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
Q +R T + IAHRL TI+++DK++V+ G
Sbjct: 177 QAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 4e-48
Identities = 80/220 (36%), Positives = 131/220 (59%), Gaps = 13/220 (5%)
Query: 341 IEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVI 397
IEF+N + RY S P ++K L++TI P + + +VG +G GKS++++ + R + G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQEV 452
+D +D D+ L LRS I ++ Q+PVLF GT+ +N+ +Y D + A ++
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI----RYGKPDATDEEVEEAAKKA 116
Query: 453 ELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
+ D IM G + V E G+ S GQ+Q I +ARA++RN IL+LDEAT+ +D +++
Sbjct: 117 NIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176
Query: 512 LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
L+Q + + T + IAHRL TI ++D + V+ +G V
Sbjct: 177 LVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 2e-46
Identities = 126/514 (24%), Positives = 221/514 (42%), Gaps = 44/514 (8%)
Query: 63 ESYIGIYFSLIVGLFVAGISRSTAFY-------SACMRCSKGIHKKMFEAVVYSPLAFFS 115
+YI G+ I R+ A Y A R + ++FE + A
Sbjct: 51 LAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL 110
Query: 116 TNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIP--VLILL 173
SG +LNR D+ A+D + + + A ++ + + + LS FSIP +L+ L
Sbjct: 111 RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALV-LIAVVTIGLS---FFSIPLALLLGL 166
Query: 174 YLFWRL----SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFD 229
L L + Y K +L R+ + + + G + GA +
Sbjct: 167 ILLLLLLIIPTLFYRAGRKFGAHLA-QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225
Query: 230 YHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
+ +W F L D + LL ++I + G A+ Q +
Sbjct: 226 ATEA----SWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAAL 280
Query: 290 GVVQW--------AMRQAA--EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLG 339
++ + A + + S +RL + +PE +E G
Sbjct: 281 ALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV------TFPDEQTATTG 334
Query: 340 K-IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GV 396
+ +E +N + Y + +KN N+T+ EK+ I+GR+G+GKS+L+ + + + G
Sbjct: 335 QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK-YPDYVLWTALQEVELK 455
I ++ ++ + LR IS++ Q LFSGTLR NL D LW ALQ+V L+
Sbjct: 395 ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLE 454
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
++ GLN + EGG S G+R+ + LARA++ + + +LDE T +DP T+ +
Sbjct: 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + T+L + HRL + D+++V+D+G
Sbjct: 515 ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 4e-46
Identities = 130/512 (25%), Positives = 229/512 (44%), Gaps = 61/512 (11%)
Query: 72 LIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMG 131
L + V+ R +F R + I + +F +++ L FF N +G + +R S D
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQ 269
Query: 132 AVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAY-------- 183
+ L + + ++ + G L L ++P ++ LI L L + K +
Sbjct: 270 TMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLS 329
Query: 184 LRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHS--STWHL 241
+++ V L G+ T+R+ A + E + + L
Sbjct: 330 EELQEAVAKANQVAEE--------ALSGMRTVRSFAAEE--GEASRFKEALEETLQLNKR 379
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQW------- 294
G+ + L +L +L GG+ L +T ++ +V +
Sbjct: 380 KALAYAGYLWTTSVLGMLIQVLVL-------YYGGQ--LVLTGKVSSGNLVSFLLYQEQL 430
Query: 295 --AMRQAAEVENHMIS----VKRLVEYT----KLEPEGNLSPNYEDENEIWPVLGKIEFQ 344
A+R + V + M+ +++ EY + G L+P + G IEFQ
Sbjct: 431 GEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPL--------NLEGLIEFQ 482
Query: 345 NTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDD 401
+ + Y + P V+K L T+HP E + +VG +G+GKS++ A + L + G + +D
Sbjct: 483 DVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIME 460
+ L ++++ Q+PVLFSG++R+N+ PD + A + D IME
Sbjct: 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602
Query: 461 -GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G + V E G+ S GQ+Q I +ARA+VR +L+LDEAT+ +D + + L+Q + +
Sbjct: 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--R 660
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
A TVL IAHRL T+ +D++LV+ G V
Sbjct: 661 SRASRTVLLIAHRLSTVERADQILVLKKGSVV 692
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-43
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 339 GKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
G+IEF+N + Y + + N+++TI EK+ I+GR G+GKS+L+ + L + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
+ +D D + + LR NI +PQD LF GTLR N+ L D
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNI-------------TLGAPLADD 107
Query: 457 -MIMEGA--------------GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
I+ A GL++ + E G S GQRQ + LARA++ + IL+LDE
Sbjct: 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
T+ +D ++ ++ +R+ D T++ I HR + D+++VMDSG
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-43
Identities = 85/270 (31%), Positives = 144/270 (53%), Gaps = 18/270 (6%)
Query: 287 TLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNT 346
L+G E+E + + ++ + G +E +N
Sbjct: 428 NLVGFGG----TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNI 483
Query: 347 NVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGVIKIDDI 402
Y P +I+N ++T+ P +++ +VG +G+GKS+ L+A +++ G I D I
Sbjct: 484 TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGI 541
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKDMIM 459
E++P L ++++++ QD LF GT+R NL DP PD L A ++ + D+I
Sbjct: 542 PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVIT 599
Query: 460 E-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
G + + EGG N S GQRQ + +ARA+VRN IL+LDEAT+ +DP+T+ +I +R
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
++ CT + +AHRL TI D D+++V++ G
Sbjct: 660 RR--GCTCIIVAHRLSTIRDCDEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 8e-42
Identities = 74/214 (34%), Positives = 125/214 (58%), Gaps = 4/214 (1%)
Query: 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
G+IEF+N + Y + N+++TI P EK+ I+GR G+GKS+L+ + L + EG
Sbjct: 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP-DYVLWTALQEVELK 455
+ +D +D + + LR NI +PQDP LF GTLR N+ Y D + A + +
Sbjct: 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVT 581
Query: 456 DMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ + GL+M + E G + S GQRQ + LARA++R+ IL+LDE T+ +D +++ +
Sbjct: 582 EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK 641
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+++ A T++ + HR + D+++VMD+G
Sbjct: 642 DRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 4e-41
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 3/228 (1%)
Query: 321 EGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGK 380
+ P +EF +V Y ++ ++ T+ P E++ +VG +GAGK
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 381 SSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK 439
S+L+ + + EG I ++ + D R I+ +PQ P LF+GT+ +N+
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP 421
Query: 440 Y-PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
D + AL+ L + + GL+ + EGG S GQ Q + LARA +R+ +L+
Sbjct: 422 DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
LDE TA++D +T+ + +R TVL + HRL +D+++V+
Sbjct: 482 LDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-39
Identities = 137/536 (25%), Positives = 240/536 (44%), Gaps = 95/536 (17%)
Query: 69 YFSLIVGLFVAGISRSTA--FYSACM---RCSKGIHKKMFEAVVYSPLAFFSTNPSGRIL 123
YF+ ++ + ++ TA FY R I + +F ++ +FF N SG ++
Sbjct: 60 YFAFLLVV-ALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVV 118
Query: 124 NRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLIL-LYLF 176
+R + D + V+ ++ A + + G LI+ +P L ++P+++L + LF
Sbjct: 119 SRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLF 178
Query: 177 WRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHS 236
R + R S+ + ++ L + T++A G H+D
Sbjct: 179 GRRVRKLSRESQD-------RIADAGSYAGETLGAIRTVQAFG-----------HEDAER 220
Query: 237 STWHLFVYTNMGFA--------YLIDFLCLLYLSTI--------------------LISF 268
S + V A L + +L I L F
Sbjct: 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQF 280
Query: 269 FFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNY 328
F+A + V ++ + G +Q A AAE RL+E + EP+ +
Sbjct: 281 VFYAVM---VAGSIGTLSEVWGELQRAA-GAAE---------RLIELLQAEPDIKAPAHP 327
Query: 329 EDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAA 386
+ P+ G+IEF+ N Y + P + LN+T+ P E + +VG +GAGKS+L
Sbjct: 328 KTLPV--PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385
Query: 387 IFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY--PDY 443
+ R + G I +D +D + ++LR+ ++++PQDPVLF+ ++ +N+ +Y PD
Sbjct: 386 LLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI----RYGRPD- 440
Query: 444 VLWTALQEVELKDMIMEGA--------GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
+EVE G + + E G S GQRQ I +ARAI+++ I
Sbjct: 441 ---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI 497
Query: 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
L+LDEAT+ +D +++ L+Q+ + T L IAHRL T++ +D+++VMD G V
Sbjct: 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIV 553
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-39
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 12/230 (5%)
Query: 330 DENEIWPV-LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388
D +WPV LG + F N + Y ++ ++ TI + + IVG +GAGKS+++ +F
Sbjct: 251 DAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF 310
Query: 389 RLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL-- 445
R +V G I ID D DV LR I I+PQD VLF+ T+ N+ KY
Sbjct: 311 RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNI----KYGRPDATA 366
Query: 446 ---WTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
A + ++ D I G + V E G S G++Q + +AR I++N IL+LDEA
Sbjct: 367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
T+ +D T+ IQ +R+ A T L IAHRL TI+D+D+++V+D+G V
Sbjct: 427 TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476
|
Length = 497 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 5e-39
Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 11/246 (4%)
Query: 308 SVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHP 366
S +R+ E T+ +PE + + + N + Y P+ V+K L++ I
Sbjct: 310 SARRINEITEQKPE----VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKA 365
Query: 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVL 425
EK+ ++GRTG GKS+L+ + R + + G I ++ D + LR IS++ Q L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 426 FSGTLRKNL---DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482
FS TLR NL P D L LQ+V L+ ++ + GLN + EGG S G+++
Sbjct: 426 FSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483
Query: 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV 542
+ +ARA++ + +L+LDE T +D +T+ I + + + TVL I HRL + D++
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543
Query: 543 LVMDSG 548
VMD+G
Sbjct: 544 CVMDNG 549
|
Length = 574 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 4e-38
Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F++ RY GP ++ N+++ I P E +GIVGR+G+GKS+L I R E G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE----- 453
+D D + LR + ++ Q+ VLF+ ++R N+ + ++ V
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMS------MERVIEAAKL 114
Query: 454 --LKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
D I E G + V E G S GQRQ I +ARA++ N IL+ DEAT+ +D +++
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
I R + A TV+ IAHRL T+ ++D+++VM+ G V
Sbjct: 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIV 215
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-37
Identities = 114/500 (22%), Positives = 202/500 (40%), Gaps = 64/500 (12%)
Query: 73 IVGLFVAGISRSTAFY-------SACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNR 125
V + GI R+ Y A +R + +++E + LA G +L R
Sbjct: 56 AVAVRAFGIGRAVFRYLERLVGHDAALRSLGALRVRVYERLARQALAGRRRLRRGDLLGR 115
Query: 126 FSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL------------ 173
D+ A+ ++ + ++ A GV V GA V+ + S+P ++L
Sbjct: 116 LGADVDALQDLYVRVIVPA--GVALVVGAAAVAAIA--VLSVPAALILAAGLLLAGFVAP 171
Query: 174 YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA-----AKILVEEF 228
+ R ++A + L R + L L G + A GA A++ +
Sbjct: 172 LVSLRAARAAEQALARL-------RGELAAQLTDALDGAAELVASGALPAALAQVEEADR 224
Query: 229 DYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGK-------VG 279
+ + + T +G A + L L + AD + +
Sbjct: 225 ELTRAERRAAA----ATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLP 280
Query: 280 LAVTQTMTLMG--VVQW-AMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWP 336
LA + + Q +R AAE R+VE
Sbjct: 281 LAAFEAFAALPAAAQQLTRVRAAAE---------RIVEVLDAAGPVAEGSAPAAGAVG-L 330
Query: 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEG 395
+E ++ + Y P V+ +++ + P E++ I+G +G+GKS+L+A + L ++G
Sbjct: 331 GKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQG 390
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVEL 454
+ +D + + ++R +S+ QD LF T+R+NL D LW AL+ V L
Sbjct: 391 EVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGL 450
Query: 455 KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D + GL+ + EGG S G+RQ + LARA++ + IL+LDE T ++D +T +
Sbjct: 451 ADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 514 QRTIRKKFADCTVLTIAHRL 533
+ + TV+ I H L
Sbjct: 511 LEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 4e-37
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
G+I+ N + Y V++N+N+++ + + +VG TG+GKS+L + + + EG I
Sbjct: 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
++D + S LR ++++ QDPV+ + T N+ + +W AL+ V+L ++
Sbjct: 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAEL 458
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
GL + E G N SVGQ+QL+ LAR +V+ IL+LDEATAN+D T+ IQ+
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ T++ IAHRL TI+++D +LV+ G AV
Sbjct: 519 LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 5e-37
Identities = 144/525 (27%), Positives = 232/525 (44%), Gaps = 62/525 (11%)
Query: 60 LSTESYIGIYFSLIVGLFVAGIS--RSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTN 117
LST S + + L V +F + R+ F R + +++ ++ PL +F +
Sbjct: 175 LSTLSVLALAM-LAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR 233
Query: 118 PSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLI 171
G + R +++ + L + L ++ V L V +P + S+
Sbjct: 234 RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYA 292
Query: 172 LLYLFW------RLSKAYLRTSKSLKYL-EGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224
LL +F R+ + R++ + +L E VT G+ TI+A
Sbjct: 293 LLSVFVGPILRKRVEDKFERSAAATSFLVESVT-------------GIETIKATATEPQF 339
Query: 225 VEEFDYHQDLHSSTWHLFVYTNMGF-----AYLIDFLCLLYLSTILISFF-FFADIGGK- 277
+D + L + F TN+G LI L+ ++ +F IGG
Sbjct: 340 QNRWD--RQLAAYVAASFRVTNLGNIAGQAIELIQ-----KLTFAILLWFGAHLVIGGAL 392
Query: 278 -VGLAVTQTMTLMGVVQWAMRQAA---EVENHMISVKRLVEYTKLEPEGNLSPNYEDENE 333
G V M V Q +R A + + I+++RL + P +
Sbjct: 393 SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN-SP----TEPRSAGLA 447
Query: 334 IWPVL-GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391
P L G I F+N RY P V+ NLN+ I P E IGIVG +G+GKS+L + RL
Sbjct: 448 ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507
Query: 392 EVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWT 447
+ G + +D +D + LR + ++ Q+ VLFS ++R N+ +P P +
Sbjct: 508 TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIH 565
Query: 448 ALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
A + D I E G N V E G N S GQRQ I +ARA+V N IL+ DEAT+ +D
Sbjct: 566 AAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 507 PKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+++ LI R +R+ TV+ IAHRL T+ D+++V++ G
Sbjct: 626 YESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-34
Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%)
Query: 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
V G +EF + + Y + + +++++ P + + IVG TGAGKS+LI + R+ + G
Sbjct: 331 VKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVEL 454
I ID D V + LR NI+++ QD LF+ ++ N+ D + A + +
Sbjct: 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQA 450
Query: 455 KDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D I G + V E G S G+RQ + +ARA++++ IL+LDEAT+ +D +T+ +
Sbjct: 451 HDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGF 557
+ + + T IAHRL T+ ++D++LV D+G VV S F
Sbjct: 511 KAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG-RVVESGSF 553
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-34
Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 23/237 (9%)
Query: 322 GNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAG 379
G+L+P++ G ++FQN Y + P V+++++ T+HP E +VG +G+G
Sbjct: 1 GSLAPDHLK--------GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSG 52
Query: 380 KSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--- 435
KS+++A + + + G + +D L S +S++ Q+PVLF+ +L+ N+
Sbjct: 53 KSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGL 112
Query: 436 ---PFEKYPDYVLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVR 491
FE + A Q+ I E A G + V E G+ S GQ+Q + +ARA++R
Sbjct: 113 QSCSFECVKE-----AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167
Query: 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
N +L+LDEAT+ +D +++ +Q+ + TVL IAHRL T+ +D++LV+D G
Sbjct: 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 1e-34
Identities = 123/487 (25%), Positives = 213/487 (43%), Gaps = 93/487 (19%)
Query: 110 PLAFFSTNPSGRILNRF---SKDMGAVDEVLPKAMLDAAQGVM-------QVSGALIVSL 159
P++FFST +G I++RF S + A+ + LD V+ Q ++SL
Sbjct: 243 PMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSL 302
Query: 160 SVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHG 219
P++++ +++ F +L+ ++ + L S + LN G+ TI++
Sbjct: 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLN-------SSIIEDLN----GIETIKSLT 351
Query: 220 AAKILVEEFDYHQDLHSSTWHLFV-YTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKV 278
E Y + F Y N F Y AD G +
Sbjct: 352 -----SEAERYSK-----IDSEFGDYLNKSFKYQK------------------ADQGQQA 383
Query: 279 GLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEY--------TKLEPEGNLSPN--- 327
AVT+ + L V+ W A V +++ +L+ + T LE NL P
Sbjct: 384 IKAVTK-LILNVVILWT--GAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQA 440
Query: 328 ----YEDENEIWPV----------------LGKIEFQNTNVRYLSGPRVIKNLNITIHPK 367
NE++ V G I + + Y G ++ ++++TI
Sbjct: 441 ARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMN 500
Query: 368 EKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF 426
K IVG +G+GKS+L + + G I ++ +D+ LR I+ +PQ+P +F
Sbjct: 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560
Query: 427 SGTLRKNL--DPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLI 483
SG++ +NL E +W A + E+KD I G + E G++ S GQ+Q I
Sbjct: 561 SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDK 541
LARA++ ++ +L+LDE+T+N+D T+ ++ + D T++ +AHRL SDK
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDK 677
Query: 542 VLVMDSG 548
++V+D G
Sbjct: 678 IIVLDHG 684
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-34
Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
IE ++ + G + LN T+ ++I +VG +GAGK+SL+ A+ +G +KI+
Sbjct: 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKIN 409
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKDM 457
I+ ++ R ++S + Q+P L GTLR N+ +P D L AL+ + +
Sbjct: 410 GIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEF 467
Query: 458 I-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ + GL+ + + SVGQ Q + LARA+++ +L+LDE TA++D ++ L+ +
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ T L + H+L + D++ VM G
Sbjct: 528 LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-33
Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 19/223 (8%)
Query: 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-----AE 392
G IE RY GP ++ ++++ I P E + IVG +G+GKS+L RL
Sbjct: 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL----LRLLLGFETP 505
Query: 393 VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
G + D D + + +R + ++ Q+ L SG++ +N+ W A +
Sbjct: 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMA 565
Query: 453 EL----KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L + M M G++ + EGG S GQRQ + +ARA+VR IL+ DEAT+ +D +
Sbjct: 566 GLAEDIRAMPM---GMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622
Query: 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
T ++ ++ + T + IAHRL TI ++D++ V+D+G V
Sbjct: 623 TQAIVSESLERLKV--TRIVIAHRLSTIRNADRIYVLDAGRVV 663
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-32
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 43/213 (20%)
Query: 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
+E +N + RY P V++N++ +I P E + I+G +G+GKS+L I L G ++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+D D ++L ++ +PQD LFSG++ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
S GQRQ + LARA+ N ILVLDE +++D + + + + I
Sbjct: 97 ----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 519 K-KFADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550
K A T + IAHR T+ +D++LV++ G
Sbjct: 141 ALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 5e-31
Identities = 81/249 (32%), Positives = 135/249 (54%), Gaps = 12/249 (4%)
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITI 364
M + + L LE E + E + I G IEF+N Y ++N+N I
Sbjct: 312 MAACQTLFAILDLEQEKD-----EGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKI 366
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
+ + +VGR+G+GKS++ + R ++ EG I +D D D L+ LR+ ++++ Q+
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426
Query: 424 VLFSGTLRKNL--DPFEKYPDYVLWTALQEVELKDMI--MEGAGLNMTVYEGGTNFSVGQ 479
LF+ T+ N+ E+Y + A + D I M+ GL+ + E G S GQ
Sbjct: 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN-GLDTVIGENGVLLSGGQ 485
Query: 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539
RQ I +ARA++R++ IL+LDEAT+ +D +++ IQ + + + T L IAHRL TI +
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545
Query: 540 DKVLVMDSG 548
D++LV++ G
Sbjct: 546 DEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-30
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIK 398
+ N + Y +V+KNL++ + EKI ++GR+G+GKS+L+ + L +G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+D + D+ + L S IS++ Q P LF TLR NL
Sbjct: 61 LDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
G FS G+RQ + LAR ++++ I++LDE T +DP T+ + I
Sbjct: 96 -------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ D T++ I H L I DK+L +++G
Sbjct: 143 EVLKDKTLIWITHHLTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-29
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 57/210 (27%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKID 400
E +N + RY + N+++T+ E + +VG G+GKS+L+ AI L + G I ID
Sbjct: 1 EIENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
D +PL +LR I +PQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ--------------------------------------- 80
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
S GQRQ + LARA++ N +L+LDE T+ +DP + + +R+
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 521 FAD-CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ TV+ + H +D+V+V+ G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 2e-29
Identities = 103/406 (25%), Positives = 192/406 (47%), Gaps = 24/406 (5%)
Query: 157 VSLSVNPLFSIPVLILLYLFWRLSKAYL-RTSKSLKYLEGVTRSPVFTHLNACLHGLPTI 215
+ +++ SI +++L L+ ++K + RT +E + VF H++ + + +
Sbjct: 150 TAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHN-VFKHVSDSISNVSVV 208
Query: 216 RAHGAAKILVEEFDYH-QDLHSS-----TWHLFVYTNMGFAYLIDFLCLLYLSTILISFF 269
++ + +L S+ W A I +C+L + T+L+
Sbjct: 209 HSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLV--- 265
Query: 270 FFADIGGKVGLAVTQTMTLMGVVQWA---MRQAAEVENHMISVK-RLVEYTKLEPEGNLS 325
I G+ L+V + + +G + Q + + + +L ++ LE
Sbjct: 266 ----IKGE--LSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319
Query: 326 PNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA 385
D E+ V G +EF++ + + + + +++ + + IVG TGAGK++LI
Sbjct: 320 EEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLIN 379
Query: 386 AIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDY 443
+ R+ + G I ID ID V LR +I+ + QD LF+ ++R+N+ E D
Sbjct: 380 LLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDE 439
Query: 444 VLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
++ A + D I++ + G + V E G S G+RQ + +ARAI++N ILVLDEAT
Sbjct: 440 EVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT 499
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ +D +T+ ++ I + T IAHRL T+ ++D VL +D G
Sbjct: 500 SALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-28
Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 35/223 (15%)
Query: 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---V 393
I ++ + + SG +K++N+ + E + IVG G+GKSSL++A+ L E +
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEKL 58
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPF--EKYPDYVLWTA 448
G + + +I+ + Q+P + +GT+R+N+ PF E+Y + A
Sbjct: 59 SGSVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACA 105
Query: 449 LQEVELKDM-IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
L+ D+ I+ G + E G N S GQ+Q I LARA+ + I +LD+ + VD
Sbjct: 106 LE----PDLEILPD-GDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
Query: 508 KT-DLLIQRTIRKKFADC-TVLTIAHRLHTIMDSDKVLVMDSG 548
+ + I + T + + H+L + +D+++V+D+G
Sbjct: 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-27
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGV 396
+E +N +V + +G + + +++ +I E +G+VG +G+GKS+L AI L G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQD------PVLFSGTLRKNL-DPFEKYPDYVLW 446
I D D + R I ++ QD P + T+ + + +P + L
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIH--GKLS 116
Query: 447 TALQEVELKDMIMEGAGLNMTV-----YEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
E +++ G GL V +E S GQRQ + +ARA+ N +L+ DE
Sbjct: 117 KKEARKEAVLLLLVGVGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEP 172
Query: 502 TANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTI-MDSDKVLVMDSG 548
T+ +D DLL + ++++ T+L I H L + +D+V VM +G
Sbjct: 173 TSALDVSVQAQILDLL--KKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 9e-27
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 29/223 (13%)
Query: 342 EFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKI 399
E +N + Y G R + ++++TI E + IVG G+GKS+L+ + L G + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYVLWT 447
D D + L +LR + ++ Q+P V F L P E+ + V
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG--LENLGLPEEEIEERVEE- 117
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
AL+ V L+ + + + + S GQ+Q + +A + + IL+LDE TA +DP
Sbjct: 118 ALELVGLEGL------RDRSPFT----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++K K T++ + H L +++ +D+V+V++ G
Sbjct: 168 AGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IE +N +Y + ++ + P E G++G GAGK++L+ + L G I +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D P +K+R I +PQ+P L+ T+R+NL+ F + Y L E +++ +
Sbjct: 65 LGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFARL--YGLSKEEAEERIEE-L 120
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+E GL + S G +Q + +A A++ + +L+LDE T+ +DP++ I +R
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 519 KKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSS 575
+ + T+L H L + D+V++++ G + ++L E V+
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA----EGTPEELKEKFGGKGVIEL 236
Query: 576 RKRREKEDRIGES 588
R + + E
Sbjct: 237 EPERLELAELLEG 249
|
Length = 293 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E +N + Y G ++ +L+ +I E GI+G G+GKS+L+ + L + G + +
Sbjct: 3 LEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D D + +L ++ +PQ P G L +YP ++ E ++++
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP-HLGLFGRPSKEDEEIVE 120
Query: 460 EGAGLNMTVYEGGTNF---SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
E L + S G+RQ + +ARA+ + IL+LDE T+++D + +
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 517 IRK--KFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+R + TV+ + H L +D ++++ G
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 24/225 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IE +N + RY +K++++ I E++ ++G G+GKS+L+ + L + G + +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 400 DDIDTEDV-PLSKLRSNISIIPQDPV--LFSGTLRKNLD---PFEKYP----DYVLWTAL 449
D +DT L +LR + ++ Q+P LF T+ + P + + AL
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEAL 123
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
+ V L+++ L+ + N S GQ+Q + +A + IL+LDE TA +DPK
Sbjct: 124 ELVGLEEL------LDRPPF----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173
Query: 510 DLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ ++K + T++ + H L +++ +D+V+V+D G +
Sbjct: 174 RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218
|
Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-25
Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 17/236 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPLSKL 412
++K ++ + E +GI+G +G+GKS+L + I+ G +++D D +L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQL 408
Query: 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPD-YVLWTALQEVELKDMIME-GAGLNMTVYE 470
+I +PQD LF GT+ +N+ F + D + A + + ++I+ G + + E
Sbjct: 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL-LIQRTIRKKFADCTVLTI 529
GG S GQRQ I LARA+ + ++VLDE +N+D + + L + K TV+ I
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 530 AHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
AHR + DK+LV+ G +++FG ++ V AKVL R+ K +
Sbjct: 529 AHRPSALASVDKILVLQDG--RIAAFG---PRE----EVLAKVLRPPPRQAKPGTV 575
|
Length = 580 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-24
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 37/234 (15%)
Query: 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
IE +N + + + ++++ I E GI+G +GAGKS+L+ I L G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 396 VIKIDDIDTEDV---PLSKLRSNISIIPQDPVLFSG-TLRKNL--------DPFEKYPDY 443
+ +D D + L +LR I +I Q L S T+ +N+ P +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
V L+ V L D Y S GQ+Q + +ARA+ N IL+ DEAT+
Sbjct: 122 VA-ELLELVGLSD--KADR------YPA--QLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 504 NVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+DP+T +LL + I ++ T++ I H + + D+V V+D G V
Sbjct: 171 ALDPETTQSILELL--KDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLV 221
|
Length = 339 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 29/209 (13%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
++N+N T+ P + +GI G TG+GKS+L++ I R +V EG I+ DI + L RS
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL-------QEVEL--------KDMIM 459
++++ Q P LFS T+ N+ AL QE+E D++
Sbjct: 390 RLAVVSQTPFLFSDTVANNI-------------ALGRPDATQQEIEHVARLASVHDDILR 436
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G + V E G S GQ+Q I +ARA++ N IL+LD+A + VD +T+ I +R+
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
TV+ AHRL + ++ ++LVM G
Sbjct: 497 WGEGRTVIISAHRLSALTEASEILVMQHG 525
|
Length = 569 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 30/230 (13%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
IE ++ NV Y G + +K++++ I E ++G +G GKS+L+ + RL A
Sbjct: 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
EG + +D DI DV + +LR + ++ Q P F G++ N+ Y L L
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA-------YGLR--LHG 109
Query: 452 VELKDMIME-------GAGLNMTVYE--GGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
++LK+ + E A L V + S GQ+Q +CLARA+ +L+LDE T
Sbjct: 110 IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +DP + I+ I + + T++ + H + +D+ + +G V
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 31/220 (14%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IE +N V Y + P V++++++++ E ++G GAGKS+L+ AI L G IKI
Sbjct: 5 IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 400 DDIDTEDVPLSKLRSNISIIPQ-------------DPVLFSGTLRKNLDPFEKYPDY-VL 445
+LR I +PQ D VL +K D +
Sbjct: 64 FGKPVRKR-RKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ V ++D+ + + E S GQ+Q + LARA+ +N +L+LDE V
Sbjct: 121 DEALERVGMEDLR------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVL 543
D I +++ + TVL + H L +M D+V+
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-23
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLR 413
++ ++ ++ E + I+G +G+GKS+L I + G +++D D +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE------LKDMIME-GAGLNM 466
+I +PQD LF GT+ +N+ F + D + +E + ++I+ G +
Sbjct: 392 KHIGYLPQDVELFPGTVAENIARFGENAD-----PEKIIEAAKLAGVHELILRLPDGYDT 446
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL-LIQRTIRKKFADCT 525
+ GG S GQRQ I LARA+ + ++VLDE +N+D + + L K T
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGIT 506
Query: 526 VLTIAHRLHTIMDSDKVLVMDSGVAVVSSFG 556
V+ I HR + DK+LV+ G ++ FG
Sbjct: 507 VVVITHRPSLLGCVDKILVLQDG--RIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 9e-23
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 41/211 (19%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKID 400
E +N +V Y G V+ +L+++I E +GI+G GAGKS+L+ + L G I +D
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
D + +L I+ +PQ AL+ + L +
Sbjct: 60 GKDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLADR 93
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK- 519
S G+RQ + LARA+ + IL+LDE T+++D + + +R+
Sbjct: 94 PF----------NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 520 -KFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+ TV+ + H L +D+V+++ G
Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-22
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 51/218 (23%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+E +N + RY V+ ++++ I E + ++G +G+GKS+L+ I L E G I I
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 400 D--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
D D+ + L LR I ++ QD LF
Sbjct: 60 DGEDLTDLEDELPPLRRRIGMVFQDFALFP------------------------------ 89
Query: 458 IMEGAGLNMTVYEGGTN----FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
++TV E N S GQ+Q + LARA+ + +L+LDE T+ +DP T +
Sbjct: 90 -------HLTVLE---NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 514 QRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++ A TV+ + H L +D+V+V+ G
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 5e-22
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 22/210 (10%)
Query: 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDT--EDVPLS 410
+ + +++ + E +G+VG +G+GKS+L + L G I D D L
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 411 KLRSNISIIPQDPVLF---SGTLRKNL-DPFEKYPDYVLWTALQEV-ELKDMI-MEGAGL 464
+LR I ++ QDP T+ L +P + V EL +++ + L
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL 423
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRK 519
+ +E S GQRQ + +ARA+ +L+LDE + +D +LL +++
Sbjct: 424 DRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD--LQE 477
Query: 520 KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ T L I+H L + +D+V VM G
Sbjct: 478 EL-GLTYLFISHDLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKID 400
E ++ V Y G V+++++ + P E + IVG GAGKS+L+ AI L + G I++
Sbjct: 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 401 DIDTEDVPLSKLRSNISIIPQ-------------DPVLFSGTLRKNLDPFEKYPDY--VL 445
PL K R I +PQ D VL K L D V
Sbjct: 60 G-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD 114
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ V L ++ + + S GQ+Q + LARA+V++ +L+LDE A V
Sbjct: 115 -EALERVGLSELA------DRQI----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMDS-DKVLVMDSGV 549
DPKT I +R+ + T+L + H L +++ D+VL+++ V
Sbjct: 164 DPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 90.9 bits (227), Expect = 2e-21
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 47/213 (22%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + RY + ++++T+ E G++G GAGK++LI I L + G IK+
Sbjct: 1 IEVRNLSKRY-GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D + P +++ I +P++P L+
Sbjct: 60 LGKDIKKEPE-EVKRRIGYLPEEPSLYE-------------------------------- 86
Query: 460 EGAGLNMTVYEGGTN--FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
N+TV E N S G +Q + LA+A++ + +L+LDE T+ +DP++ +
Sbjct: 87 -----NLTVRE---NLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 518 RK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
R+ K T+L +H L D+V ++++G
Sbjct: 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E +N + S V+K++N+ I E + ++G +G GKS+L+ I L E G I I
Sbjct: 4 LELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D D D+P K R I+++ Q+ L+ T+ +N+ + + E++ + +
Sbjct: 63 DGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIA----FGLKLRGVPKAEIDKR--V 114
Query: 459 MEGAG-LNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
E A L + S GQRQ + LARA+VR + +LDE +N+D K +L++
Sbjct: 115 KEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS 174
Query: 516 TIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
I+K + T + + H M +D+++VM+ G
Sbjct: 175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 9e-21
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 21/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E + + Y R + +L++T+ P E + ++G +G GK++L+ I L G I I
Sbjct: 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK-DM 457
D D VP R NI ++ QD LF T+ +N+ + + E+ +
Sbjct: 60 DGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIA----FGLKLRGVPKAEIRARVRE 113
Query: 458 IMEGAGL----NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
++E GL N +E S GQ+Q + LARA+ R +L+LDE + +D K +
Sbjct: 114 LLELVGLEGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 514 QRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +++ + T + + H + +D++ VM+ G V
Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 22/226 (9%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGV 396
IE +N + + +K++++++ E GI+GR+GAGKS+LI I L G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV 452
+ +D D + L K R I +I Q L S T+ +N+ P + E+
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENV----ALPLEIAGVPKAEI 117
Query: 453 ELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-- 509
E + ++E GL S GQ+Q + +ARA+ N +L+ DEAT+ +DP+T
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 510 ---DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
LL R I ++ T++ I H + + D+V VM+ G V
Sbjct: 178 SILALL--RDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IE +N + Y +G + +K+++++I+P E + ++G +GAGKS+L+ + L E G + I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 400 DDIDTEDVPLSKL---RSNISIIPQDP-----------VLFS-----GTLRKNLDPFEKY 440
D D + L R I +I Q VL T R F K
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
AL+ V L D + A S GQ+Q + +ARA+++ +++ DE
Sbjct: 121 EKQRALAALERVGLLDKAYQRAD----------QLSGGQQQRVAIARALMQQPKLILADE 170
Query: 501 ATANVDPKTDLLIQRTIRK 519
A++DP + + +++
Sbjct: 171 PVASLDPASSRQVMDLLKR 189
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 39/234 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+E +N + Y +G + +KN+N+ I+P E + I+G +GAGKS+L+ I RL E G I +
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 400 DDIDTEDV---PLSKLRSNISIIPQD-----------PVL-----FSGTLRKNLDPFEKY 440
+ D + L KLR I +I Q VL + T R L F +
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
+AL+ V L D Y+ S GQ+Q + +ARA+ + +++ DE
Sbjct: 122 DKERALSALERVGLADK----------AYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 501 ATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
A++DPKT D L + I K+ ++ + H++ +D+++ + +G
Sbjct: 172 PIASLDPKTSKQVMDYL--KRINKEDGITVIINL-HQVDLAKKYADRIVGLKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 5e-19
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 21/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
IE + + G R + K +++ + E + I+G +G+GKS+L+ I L G +
Sbjct: 1 IELRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 399 IDDIDTEDV---PLSKLRSNISIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTALQEVE 453
ID D + L +LR + ++ Q LF T+ +N+ P ++ T L E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREH------TRLSEEE 112
Query: 454 LKDMIMEG---AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
++++++E GL S G ++ + LARA+ + +L+ DE TA +DP
Sbjct: 113 IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 511 LLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+I IR KK T + + H L T +D++ V+ G
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 39/208 (18%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----E 394
I +N ++R G ++ LN + P E++ I G +GAGK+SL+ A+ A +
Sbjct: 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRAL---AGLWPWGS 447
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQE 451
G I + S + +PQ P L GTLR+ L + + D L L +
Sbjct: 448 GRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496
Query: 452 VELKDMI--MEGAG-----LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
V L D+ ++ L S G++Q + AR ++ + LDEAT+
Sbjct: 497 VGLGDLAERLDEEDRWDRVL-----------SGGEQQRLAFARLLLHKPKWVFLDEATSA 545
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHR 532
+D +T+ + + ++++ D TV+++ HR
Sbjct: 546 LDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 35/227 (15%)
Query: 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGV 396
I+ +N + Y + +KN++ I+ E + I+G G+GKS+ ++ + + G
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS--GE 65
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYV 444
IKID I L ++R I II Q+P + F G K + P +K D +
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLENKKVPP-KKMKDII 123
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
A ++V ++D + + N S GQ+Q + +A + N I++ DE+T+
Sbjct: 124 DDLA-KKVGMEDYLDKEP----------QNLSGGQKQRVAIASVLALNPEIIIFDESTSM 172
Query: 505 VDP--KTDLL-IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+DP K ++ I +RK T+++I H + + +DKV+V G
Sbjct: 173 LDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAILADKVIVFSEG 218
|
Length = 271 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-18
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF N Y +G + +NI+I E + +VG +GAGKS+L+ I++ G I++
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 400 DDIDTEDVP---LSKLRSNISIIPQDPVLFSGTLRKNLDPFEK--YPDYVLWTALQEVEL 454
+ D D+ + LR I ++ QD L + + +E + V +E+
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP-----DRNVYENVAFALEVTGVPPREIRK 115
Query: 455 K-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ +E GL+ S G++Q + +ARAIV + IL+ DE T N+DP T I
Sbjct: 116 RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 514 QRTIRK-KFADCTVLTIAH 531
++K A TV+ H
Sbjct: 176 MNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-18
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 28/213 (13%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKID-DIDTEDVPLSKL 412
+ N+++ I E +GIVG +G+GKS+L + L + G I +D
Sbjct: 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80
Query: 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM------IMEGAGLNM 466
+ ++ QDP +L+P +L L+ L +++ GL
Sbjct: 81 YRPVQMVFQDPY-------SSLNPRRTVGR-ILSEPLRPHGLSKSQQRIAELLDQVGLPP 132
Query: 467 TVYEGGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRKK 520
+ + + S GQRQ I +ARA++ +L+LDE T+ +D +LL+ ++K+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL--ELKKE 190
Query: 521 FADCTVLTIAH--RLHTIMDSDKVLVMDSGVAV 551
T L I+H L M D++ VMD+G V
Sbjct: 191 R-GLTYLFISHDLALVEHM-CDRIAVMDNGQIV 221
|
Length = 252 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 9e-18
Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 11/236 (4%)
Query: 70 FSLIVGLFVAGISRSTAFYSA-------CMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRI 122
SL + L G+ + + R K + + + ++ P++FF TN G +
Sbjct: 41 ISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGEL 100
Query: 123 LNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKA 182
+R + D+ + + L + Q + V G IV ++ +L +L L LS
Sbjct: 101 TSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAV 160
Query: 183 YLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLF 242
+ + L E + + L G+ T++A G + +E +D +
Sbjct: 161 LAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK 220
Query: 243 VYTNMGFAYLIDFLCLLYLSTILISFF--FFADIGGKVGLAVTQTMTLMGVVQWAM 296
T + + YLS L +F + GG V ++L + +
Sbjct: 221 AITAGLSFGITQL--ISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IE +N + Y G + +K++N+ I+ E + I+G +GAGKS+L+ ++ L + G I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 400 DDIDTEDVP---LSKLRSNISIIPQDP-----------VLFS-----GTLRKNLDPFEKY 440
+ + + L KLR +I +I Q VL T R F K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
AL+ V + D + A S GQ+Q + +ARA+V+ I++ DE
Sbjct: 124 DKAQALDALERVGILDKAYQRAS----------TLSGGQQQRVAIARALVQQPKIILADE 173
Query: 501 ATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
A++DP++ + ++ + TV+ H++ +D+++ + +G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224
|
Length = 258 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-17
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
+IEF+ + G ++K++++ IVG +GAGKS+LI I RL + EG I
Sbjct: 3 EIEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKD 456
ID +D + + + LR I ++ Q P LF GT++ N++ P K V +VE
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV------DVEY-- 113
Query: 457 MIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ GLN N S G+ Q + +AR + N +L+LDE T+ +DP + +I+
Sbjct: 114 -YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 516 TIR--KKFADCTVLTIAHRL 533
I K + TV+ I H +
Sbjct: 173 LIVKLKNKMNLTVIWITHNM 192
|
Length = 241 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 4e-17
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 8/217 (3%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
I +N + Y G ++N+N+ I E IGI+G+ G+GKS+L + L + G + +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 400 DDIDTEDVP-LSKLRSNISIIPQDP-VLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKD 456
IDT D L +R + I+ Q+P F G T+ ++L F P+ + ++ + D
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDL-AFG--PENLCLPPIEIRKRVD 118
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ GL + S GQ Q + LA + L+ DE T+ +DP + + +
Sbjct: 119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178
Query: 517 IRKKFADC-TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552
I+K T++ I H L + D+D+++VMD G V+
Sbjct: 179 IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL 215
|
Length = 274 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 9e-17
Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 39/233 (16%)
Query: 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I+ +N Y+ G + + N+NI I E +G++G TG+GKS+LI + L + G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 396 VIKIDDIDTED--VPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPDYV 444
I ID +D D V LS +R + ++ Q P LF T+ K NL
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---------- 112
Query: 445 LWTALQEVELKDMI---MEGAGLNMTVYEGGTNF--SVGQRQLICLARAIVRNNVILVLD 499
L E E+++ + M GL+ Y+ + F S GQ++ + +A + IL+LD
Sbjct: 113 ---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD 169
Query: 500 EATANVDPKT--DLLIQ-RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
E TA +DPK ++L + + + K++ + T++ ++H + + +D+++VM+ G
Sbjct: 170 EPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRIIVMNKG 221
|
Length = 287 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 1e-16
Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 12/161 (7%)
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD------PFEKYPDYVLWTA 448
G I +D +D D L LR+ SI+ Q+P+LF+ ++ +N+ E + A
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+ E + + N+ Y G + S GQ+Q I +ARA++R IL+LDEAT+++D
Sbjct: 1337 IDE--FIESLPNKYDTNVGPY--GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392
Query: 509 TDLLIQRTIR--KKFADCTVLTIAHRLHTIMDSDKVLVMDS 547
++ LI++TI K AD T++TIAHR+ +I SDK++V ++
Sbjct: 1393 SEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-16
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 19/216 (8%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
++ +N RY R + +++T+ G++G GAGK++L+ + L G I+I
Sbjct: 1 LQLENLTKRYGKK-RALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK---- 455
D D P KLR I +PQ+ + N E + DY+ W L+ + K
Sbjct: 59 DGQDVLKQP-QKLRRRIGYLPQEF-----GVYPNFTVRE-FLDYIAW--LKGIPSKEVKA 109
Query: 456 --DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D ++E L + + S G R+ + +A+A+V + IL++DE TA +DP+ +
Sbjct: 110 RVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDS-DKVLVMDSG 548
+ + + D V+ H + + ++V V++ G
Sbjct: 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 2e-16
Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVI----KIDDIDTED 406
SG + N+NI I + IVG+ G GKSSL+ AI + +EG + K + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 407 VPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEK--YPDYVLWTALQEVELKDMIMEG 461
S+ R +++ Q P L + T+ +N+ PF K Y +LQ D+ +
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQ----PDIDLLP 127
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQRTIRKK 520
G + E G N S GQRQ IC+ARA+ +N I+ LD+ + +D +D L+Q I K
Sbjct: 128 FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187
Query: 521 FAD--CTVLTIAHRLHTIMDSDKVLVMDSG 548
D T++ + H+L + +D ++ M G
Sbjct: 188 LQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-16
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 47/193 (24%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N ++ G ++K+L+ I P +++ I G +G GKSSL A+ L G I +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
P ++ +PQ P L GTLR+ L YP W
Sbjct: 61 --------PE---GEDLLFLPQRPYLPLGTLREQL----IYP----W------------- 88
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
S G++Q + AR ++ + LDEAT+ +D +++ + + +++
Sbjct: 89 ------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136
Query: 520 KFADCTVLTIAHR 532
TV+++ HR
Sbjct: 137 LGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 3e-16
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 54/215 (25%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
+E + R+ G + + +++++ E ++G GAGKS+L+ + G+ K D
Sbjct: 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILS------GLYKPD 53
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
+ +L G P + A +
Sbjct: 54 SGE--------------------ILVDGKEVSFASPRD---------ARR---------- 74
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQRTIRK 519
AG+ M VY+ SVG+RQ++ +ARA+ RN +L+LDE TA + P + L + R
Sbjct: 75 -AGIAM-VYQ----LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128
Query: 520 KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+ V+ I+HRL + + +D+V V+ G V +
Sbjct: 129 RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 4e-16
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
IE +N + Y G +K++N+ I E + IVG +G+GKS+L+ + L + G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 397 IKIDDIDTEDVP---LSKLR-SNISIIPQD-PVLFSGTLRKNLD---PFEKYPDYVLWTA 448
+ I+ D + L+KLR I + Q+ +L T+ +N++ A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+E+ + E L E S GQ+Q + +ARA++ N I++ DE T N+D K
Sbjct: 122 AEELLEVLGL-EDRLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 509 T-----DLLIQRTIRKKFADCTVLTIAH 531
T +LL R + K+ T++ + H
Sbjct: 177 TAKEVLELL--RELNKER-GKTIIMVTH 201
|
Length = 226 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 61/263 (23%), Positives = 122/263 (46%), Gaps = 37/263 (14%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
IE +N N+ Y +KN+N+ I + ++G +G GKS+L+ ++ R+ + +
Sbjct: 1 AIEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL--------DPFEKYPDY 443
EG + D DI + + + +LR + ++ Q P F ++ N+ +K D
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
++ +L++ L D + + + S GQ+Q +C+ARA+ +L+LDE T+
Sbjct: 120 IVEESLKKAALWDEVKDRLHDS------ALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRL-HTIMDSDKVLVMDSGVAVVSSFGFFFSKD 562
+DP I+ I++ T++ + H + SD+ FF+ +
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT-------------AFFYDGE 220
Query: 563 LIEGTVSAKVLSSRKRREKEDRI 585
L+E + ++ ++ K + ED I
Sbjct: 221 LVEYGPTEQIFTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 46/243 (18%)
Query: 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-----AE 392
+E +N V + + +++++ + P E +GIVG +G+GKS+L A+ L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 393 VEGVIKIDDID----TEDVPLSKLR-SNISIIPQD------PVLFSG-------TLRKNL 434
G + +D D +E + KLR I++I QD PV+ G L
Sbjct: 66 TSGEVILDGRDLLGLSER-EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124
Query: 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
E V L++V L D + ++ S G RQ + +A A+
Sbjct: 125 SRAEARKRAV--ELLEQVGLPDPERR----DRYPHQ----LSGGMRQRVMIAMALALKPK 174
Query: 495 ILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+L+ DE T +D T DLL + ++++ VL I H L + + +D+V+VM G
Sbjct: 175 LLIADEPTTALDVTTQAQILDLL--KDLQREL-GMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 549 VAV 551
V
Sbjct: 232 EIV 234
|
Length = 539 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 6e-16
Identities = 61/262 (23%), Positives = 123/262 (46%), Gaps = 35/262 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+E +N N+ Y + + ++N+ I+ + ++G +G GKS+ + + R+ ++
Sbjct: 4 KMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDY 443
EG + +D +I +DV + +LR + ++ Q P F ++ N+ +K D
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
++ AL++ L D + + + + S GQ+Q +C+AR I ++++DE T+
Sbjct: 123 IVEWALKKAALWDEVKD------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + L I+ + + + T++ + H M V FF DL
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHN------------MQQASRVSDYTAFFLMGDL 224
Query: 564 IEGTVSAKVLSSRKRREKEDRI 585
IE + K+ +++E ED I
Sbjct: 225 IEFNKTEKIFLEPQKKETEDYI 246
|
Length = 251 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-16
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 381 SSLIAAIFRLAE-VEGVIKIDDID-TEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPF 437
S+L+ I L + G I +D D T LR I ++ QDP LF T+R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 438 EKYPDYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQLICLARAIVRNNVIL 496
+ + A E +E GL + E S GQ+Q + +ARA+++ +L
Sbjct: 61 LRDKE-----ADARAEE---ALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 497 VLDEATA 503
+LDE TA
Sbjct: 113 LLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 9e-16
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 26/227 (11%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E +N + Y G + ++ +++ + E + ++GR GAGK++L+ I L G I
Sbjct: 4 LEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 399 IDDIDTEDVPLSKL-RSNISIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTA-LQEV-- 452
D D +P + R I+ +P+ +F T+ +NL D L+EV
Sbjct: 62 FDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE 121
Query: 453 ---ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
LK+ + AG S G++Q++ +ARA++ +L+LDE + + PK
Sbjct: 122 LFPRLKERRNQRAG----------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171
Query: 510 DLLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
I I+ +K T+L + ++ +D+ V+++G V+S
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218
|
Length = 237 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 26/221 (11%)
Query: 340 KIEFQNTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVI 397
IE + + G RVI +++ + E + I+G +G+GKS+L+ I L +G I
Sbjct: 8 LIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 398 KIDDIDTEDVP---LSKLRSNISIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTALQEV 452
ID D + L ++R + ++ Q LFS T+ +N+ P ++ T L E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH------TKLPES 119
Query: 453 ELKDMIM---EGAGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP- 507
++++++ E GL + + S G R+ + LARAI + +L LDE T+ +DP
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 508 ---KTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLV 544
D LI R + TV+ + H L +++ +D+V V
Sbjct: 180 SAGVIDELI-RELNDAL-GLTVIMVTHDLDSLLTIADRVAV 218
|
Length = 263 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 47/268 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
KI+ +N N Y +KN+N+ I + +G +G GKS+L+ R+ E
Sbjct: 13 KIQVRNLNF-YYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL----DPFEKYP-----D 442
EG I +D +I T ++ LR+ + ++ Q P F ++ N+ FEK +
Sbjct: 72 EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE 131
Query: 443 YVLWTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILV 497
V W AL + E+KD + ++ G + S GQ+Q +C+AR I +R V+L
Sbjct: 132 RVEW-ALTKAALWNEVKDKL----------HQSGYSLSGGQQQRLCIARGIAIRPEVLL- 179
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGF 557
LDE + +DP + I+ I + D TV+ + H M F
Sbjct: 180 LDEPCSALDPISTGRIEELITELKQDYTVVIVTHN------------MQQAARCSDYTAF 227
Query: 558 FFSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ +LIE + + + +++ ED I
Sbjct: 228 MYLGELIEFGNTDTIFTKPAKKQTEDYI 255
|
Length = 260 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 30/225 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
I F+N + Y G +++++ I E + + G +GAGKS+L+ I+ G I +
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 400 DD-----IDTEDVPLSKLRSNISIIPQD-PVLFSGTLRKNL--------DPFEKYPDYVL 445
+ + ++P LR I ++ QD +L T+ +N+ P + V
Sbjct: 62 NGHDLSRLKGREIPF--LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
L V LK L + S G++Q + +ARAIV +L+ DE T N+
Sbjct: 120 -EVLDLVGLKHKARA---LPSQL-------SGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMDSDK-VLVMDSG 548
DP I R + TVL H L + VL ++ G
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID 403
N + Y G ++ +L++ ++ E I + G+ GAGK++L + L E G I ++
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61
Query: 404 TEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG 461
+ + + R +I + QD LF+ ++R+ L K D A E LKD+
Sbjct: 62 -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--ETVLKDL---- 114
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-K 520
L + S GQ+Q + +A A++ +L+ DE T+ +D K + IR+
Sbjct: 115 -DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 521 FADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
V+ I H + D+VL++ +G
Sbjct: 174 AQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 43/220 (19%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDV-PLSK 411
R + +++T+ + +G+VG +G+GKS+L A+ RL +G I+ D DID +
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 412 LRSNISIIPQDPVLFSGTL-----------------RKNLDPFEKYPDYVLWTALQEVEL 454
LR + ++ QDP G+L L E+ D + AL+EV L
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHEPKLSAAER--DQRVIEALEEVGL 415
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT----- 509
+ A N +E FS GQRQ I +ARA++ +++LDE T+ +D
Sbjct: 416 -----DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
DLL R +++K + L I+H L + +V+VM G
Sbjct: 467 DLL--RDLQQKH-GLSYLFISHDLAVVRALCHRVIVMRDG 503
|
Length = 534 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF+N RY G + + NLN+ I E + ++G +G+GK++ + I RL E G I I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKN--LDP-FEKYPDYVLWTALQEVELK 455
D D + +LR I + Q LF T+ +N L P K+P + E+ L
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL-LA 119
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD----- 510
+ ++ A Y S GQ+Q + +ARA+ + +L++DE +DP T
Sbjct: 120 LVGLDPAEF-ADRYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
Query: 511 --LLIQRTIRKKFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+Q+ + K T++ + H + +D++ +M +G
Sbjct: 177 EFKRLQQELGK-----TIVFVTHDIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 64/267 (23%), Positives = 127/267 (47%), Gaps = 46/267 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
IE ++ N+ Y +K++N+ I + ++G +G GKS+L+ + R+ A V
Sbjct: 7 AIEVRDLNL-YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF--------EKYPDY 443
EG + +D +I V + +LR + ++ Q P F ++ N+ + +K D
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKELDE 124
Query: 444 VLWTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499
++ ++L++ E+KD + ++ S GQ+Q +C+ARA+ +L++D
Sbjct: 125 IVESSLKKAALWDEVKDRL----------HKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF-GFF 558
E T+ +DP + L I+ I + T++ + H + A VS + FF
Sbjct: 175 EPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQ-------------AARVSDYTAFF 221
Query: 559 FSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ +L+E + K+ ++ K + ED I
Sbjct: 222 YLGELVEFGPTDKIFTNPKHKRTEDYI 248
|
Length = 253 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 2e-15
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 42/233 (18%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
IE +N + Y G +K ++++I E + IVG +G+GKS+L+ + L G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 397 IKIDDIDTEDVPLSKL----RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+++D D + +L R +I + Q NL P TAL+ V
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSF---------NLLPD--------LTALENV 103
Query: 453 ELKDMI---------------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
EL ++ +E GL + + S GQ+Q + +ARA+ + I++
Sbjct: 104 ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIIL 163
Query: 498 LDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
DE T N+D +T + +R+ K A T++ + H +D+++ + G
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 21/220 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF+N + RY + + ++N+TI E + ++G +G+GK++ + I RL E G I I
Sbjct: 2 IEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D D D+ +LR I + Q LF T+ +N+ P + W + + D +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI---ATVPKLLGWDKERIKKRADEL 117
Query: 459 MEGAGLNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ-- 514
++ GL+ + Y S GQ+Q + +ARA+ + IL++DE +DP T +Q
Sbjct: 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177
Query: 515 -RTIRKKFADCTVLTIAHRLHTIMD-----SDKVLVMDSG 548
+ ++K+ T++ + H +D +D++ VMD+G
Sbjct: 178 IKELQKEL-GKTIVFVTHD----IDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-15
Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 35/262 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
KI+ ++ N Y +K +++ I K + +G +G GKS+ + R+ +
Sbjct: 3 KIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGT--------LRKNLDPFEKYPDY 443
EG I+ID +I + V + +LR N+ ++ Q P F + LR N +
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ 121
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
+ L+ L D + + + E S GQ+Q +C+ARA+ + +L++DE +
Sbjct: 122 RVEETLKGAALWDEVKD------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + ++ I + D T++ + H M V FF+ ++
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHN------------MQQAARVSDKTAFFYMGEM 223
Query: 564 IEGTVSAKVLSSRKRREKEDRI 585
+E + K+ ++ ++ ++ I
Sbjct: 224 VEYDDTKKIFTNPEKEATQNYI 245
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 5e-15
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 41/234 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
+E + + + G + + +++T+ P E ++G GAGKS+L+ + GV D
Sbjct: 9 LELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS------GVYPPD 61
Query: 401 D----IDTEDVPLSK----LRSNISIIPQDPVLFSGTLRKNLD----------PFEKYP- 441
ID + V S L + I+ + Q+ L NL P ++
Sbjct: 62 SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV-----PNLSVAENIFLGREPTRRFGL 116
Query: 442 -DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
D L + ++ + V + S+ QRQ++ +ARA+ + +L+LDE
Sbjct: 117 IDRKAMRRRARELLARLGLD-IDPDTLV----GDLSIAQRQMVEIARALSFDARVLILDE 171
Query: 501 ATANVDPK-TDLLIQRTIRKKFAD-CTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
TA + K T+ L IR+ A ++ I+HRL + + +D++ V+ G V
Sbjct: 172 PTAALTVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 6e-15
Identities = 113/493 (22%), Positives = 218/493 (44%), Gaps = 57/493 (11%)
Query: 118 PSGRILNRFSKDMGAVDEVLPKAM-LDAAQGVMQVSGALIVS-LSVNPLFSIPVLILLYL 175
SG++ N + D A+ ++ + L +A + VS L+ L V LF +L LL
Sbjct: 396 ASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIP 455
Query: 176 FWRLSKAYLRTSKSLKYLEGVTRSPVFTHL-NACLHGLPTIRAHGAAKILVEEFDYH-QD 233
L +R EG+ + + N L + T++ + K F+ Q
Sbjct: 456 LQTLIVRKMRKLTK----EGLQWTDKRVGIINEILASMDTVKCYAWEK----SFESRIQG 507
Query: 234 LHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQT-MTLMGVV 292
+ + F + A+ L + + L+SF F +GG + A T ++L V+
Sbjct: 508 IRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVL 567
Query: 293 QWAMRQ----AAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNV 348
+ + ++V N +S++R+ E L E L+ N + P I +N
Sbjct: 568 RSPLNMLPNLLSQVVNANVSLQRIEELL-LSEERILAQN----PPLQPGAPAISIKNGYF 622
Query: 349 RY---LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405
+ S P + ++N+ I + IVG TG GK+SLI+A+ L E + +T
Sbjct: 623 SWDSKTSKP-TLSDINLEIPVGSLVAIVGGTGEGKTSLISAM--LGE------LSHAETS 673
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
V +R +++ +PQ +F+ T+R+N+ + W A+ L+ + G +
Sbjct: 674 SV---VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 466 MT-VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRK 519
+T + E G N S GQ+Q + +ARA+ N+ I + D+ + +D D ++ ++
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMDSGV-------AVVSSFGFFFSKDLIEGTVSAKV 572
K T + + ++LH + D+++++ G+ A +S G F K L+E + K+
Sbjct: 791 K----TRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKK-LMEN--AGKM 843
Query: 573 LSSRKRREKEDRI 585
++++ ++ I
Sbjct: 844 DATQEVNTNDENI 856
|
Length = 1495 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 8e-15
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E +N N Y G +++ +++T+ E + ++GR GAGK++L+ I L G I+
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 399 IDDIDTEDVPLSK-LRSNISIIPQDPVLFSG-TLRKNL---------DPFEKYPDYVLWT 447
D D +P + R+ I +P+ +F T+ +NL + + V
Sbjct: 59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY-- 116
Query: 448 ALQEV--ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
E+ LK+ + AG S G++Q++ +ARA++ +L+LDE + +
Sbjct: 117 ---ELFPRLKERRKQLAG----------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
PK I IR+ + T+L + ++ +D+ V++ G
Sbjct: 164 APKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-15
Identities = 61/269 (22%), Positives = 125/269 (46%), Gaps = 47/269 (17%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------ 392
GKI ++ ++ Y + +K +N+ I + ++G +G GKS+ + + R+ +
Sbjct: 2 GKISVKDLDLFY-GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK 60
Query: 393 VEGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL----------DPFEKY 440
+EG + +D DI D+ +++LR + ++ Q P F ++ N+ D +K
Sbjct: 61 IEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD--KKK 118
Query: 441 PDYVLWTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496
D ++ +L+ E+KD + + A S GQ+Q +C+ARA+ +L
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSA----------LGLSGGQQQRLCIARALAVEPEVL 168
Query: 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFG 556
++DE T+ +DP + L I+ I++ D T++ + H M +
Sbjct: 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN------------MQQASRISDKTA 216
Query: 557 FFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
FF + +++E + + ++ K + ED I
Sbjct: 217 FFLNGEIVEFGDTVDLFTNPKDKRTEDYI 245
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-14
Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 43/266 (16%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------ 393
+IE +N N Y ++KN+N+ I ++G +G GKS+ I + R+ ++
Sbjct: 3 RIEVENLNT-YFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL------------DPFEK 439
EG I +D DI V + +LR + ++ Q P F ++ N+ D E+
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 440 YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499
+ L A E+KD + + A S GQ+Q +C+AR I + ++++D
Sbjct: 122 RVEESLKAAALWDEVKDKLDKSA----------LGLSGGQQQRLCIARTIAVSPEVILMD 171
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFF 559
E + +DP + I+ I K D T++ + H M V FF
Sbjct: 172 EPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN------------MQQATRVSKYTSFFL 219
Query: 560 SKDLIEGTVSAKVLSSRKRREKEDRI 585
+ ++IE ++ ++ + K + ED I
Sbjct: 220 NGEIIESGLTDQIFINPKDKRTEDYI 245
|
Length = 250 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IEF N + Y G + ++++ I E + + G +GAGK++L+ ++ L G ++I
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 400 DDIDTEDVP---LSKLRSNISIIPQDPVLFSG---------TLRKNLDPFEKYPDYVLWT 447
D + L LR I ++ QD L L + V
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV-GA 120
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
AL++V L+ S G++Q + +ARAIV + +L+ DE T N+DP
Sbjct: 121 ALRQVGLEHKADAFPE----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 508 KTDLLIQRTIRKKFAD--CTVLTIAHRLHTI 536
I + K+ TV+ H L +
Sbjct: 171 DLSERILD-LLKRLNKRGTTVIVATHDLSLV 200
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
IE N V Y S VIK +++ I ++G +G GKS+L+ RL A VE
Sbjct: 5 IETVNLRVYYGSN-HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVE 63
Query: 395 GVIKI--DDIDTEDVPLSKLRSNISIIPQDP-----------VLFSGTLRKNLDPFEKYP 441
G +++ +I + DV ++R + ++ Q P V L + ++
Sbjct: 64 GEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD 123
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+ V W AL++ L D + + + Y N S GQRQ + +ARA+ IL++DE
Sbjct: 124 ERVEW-ALKKAALWDEVKD----RLNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
TAN+DP I+ + + + T++ + H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-14
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 347 NVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVI--KIDDI 402
V YL+G I N+++++ E I I G +G GKS+L+ + L + G + + +D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFE---KYPDYVLWTA-LQEVELKDM 457
T R +S Q P LF T+ NL P++ + PD L L D
Sbjct: 68 STLKPE--AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDS 125
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
I+ + T S G++Q I L R + IL+LDE T+ +D I+ I
Sbjct: 126 ILT---------KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 518 RKKFA--DCTVLTIAH 531
+ + VL I H
Sbjct: 177 HRYVREQNVAVLWITH 192
|
Length = 223 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 4e-14
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VE 394
IE +N + Y + +KN+ + I + I+G +G GK++L+ +I R+ + VE
Sbjct: 4 IEIENFSA-YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDYV 444
G I DI + +++ R + ++ Q P F ++ N+ + D +
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ +L++ L D + LN + GT S GQ+Q +C+ARA+ +++LDE T+
Sbjct: 123 VEESLKKAALWDEVKSE--LN----KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+DP I++ + + + T++ + H + I +D + M G
Sbjct: 177 LDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRG 221
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 4e-14
Identities = 61/264 (23%), Positives = 117/264 (44%), Gaps = 40/264 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
+I+ +N N+ Y + +KN+++ I ++G +G GKS+ I + R+ + +
Sbjct: 12 QIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
EG + I+ DI DV + +LR N+ ++ Q P F P Y + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 452 VELKDM--IMEGAGLNMTVYEGGTN--------FSVGQRQLICLARAIVRNNVILVLDEA 501
KD+ ++E A + +++ ++ S GQ+Q +C+AR + I++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSK 561
T+ +DP + I+ I D T++ + H M + GFF
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHN------------MQQAARISDYTGFFLMG 229
Query: 562 DLIEGTVSAKVLSSRKRREKEDRI 585
+LIE + ++ + + + ED I
Sbjct: 230 ELIEFGQTRQIFHNPREKSTEDYI 253
|
Length = 258 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 5e-14
Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 35/262 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
KI+ + N Y +V+KN+N+ ++ I+G +G GKS+L+ A+ R+ A +
Sbjct: 4 KIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL 62
Query: 394 EGVIKIDD--IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDY 443
EG + +D+ I + ++ + LR + ++ Q P F ++ N+ + D
Sbjct: 63 EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDE 122
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
V+ +L++ L D + + +++ G S GQ+Q +C+AR + ++++DE +
Sbjct: 123 VVEKSLRQAALWDEVKD------NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + + I+ +++ + T+ + H M GF + DL
Sbjct: 177 ALDPVSTMRIEELMQELKQNYTIAIVTHN------------MQQAARASDWTGFLLTGDL 224
Query: 564 IEGTVSAKVLSSRKRREKEDRI 585
+E + ++ S + + ED I
Sbjct: 225 VEYGRTGEIFSRPRDKRTEDYI 246
|
Length = 251 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 5e-14
Identities = 58/253 (22%), Positives = 120/253 (47%), Gaps = 32/253 (12%)
Query: 344 QNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----AEVEGVIK 398
+ TN+ G + + ++N+ I + ++G +G GKS+ + R+ A+++G+++
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE 63
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY---------PDYVLWTAL 449
I+ D ++ + LR N+ ++ Q P +F ++ +N+ K + ++ L
Sbjct: 64 IEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCL 123
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
Q+V L + + + N GG Q+Q +C+ARA+ +L+LDE T+ +DP +
Sbjct: 124 QKVGLFEEVKDKLKQNALALSGG------QQQRLCIARALAIKPKLLLLDEPTSALDPIS 177
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVS 569
+I+ +++ ++H L IM + M G V FF +LIE S
Sbjct: 178 SGVIEELLKE---------LSHNLSMIMVTHN---MQQGKRVADYTAFFHLGELIEFGES 225
Query: 570 AKVLSSRKRREKE 582
+ + K+ + +
Sbjct: 226 KEFFENPKQEKTK 238
|
Length = 246 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 6e-14
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 49/212 (23%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDID-TE 405
VR LS +++++ + E +GI G G G++ L A+F L G I +D T
Sbjct: 7 VRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
P +R+ I+ +P+D RK EG L+
Sbjct: 67 RSPRDAIRAGIAYVPED--------RKR--------------------------EGLVLD 92
Query: 466 MTVYEGGTNFSVGQR------QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
++V E N ++ Q + LAR + R+ +L+LDE T VD I R IR
Sbjct: 93 LSVAE---NIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR- 148
Query: 520 KFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ AD VL I+ L ++ D++LVM G
Sbjct: 149 ELADAGKAVLLISSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 6e-14
Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 47/264 (17%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--------D 401
Y + + I+ +++ I+ + I+G +G GKS+ I + R++E+EG +K++ +
Sbjct: 16 YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN 75
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA--LQEVELKDMI- 458
I + +++LR I ++ Q P F ++ +N+ Y + + L + +L +++
Sbjct: 76 IYDPRININRLRRQIGMVFQRPNPFPMSIYENV-------AYGVRISAKLPQADLDEIVE 128
Query: 459 --MEGAGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
++GA L V + S GQ+Q +C+ARA+ +L++DE + +DP +
Sbjct: 129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMK 188
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKD------LIEG 566
++ I ++ T+ + H + VS F FFS D ++E
Sbjct: 189 VEELIHSLRSELTIAIVTHNMQQ-------------ATRVSDFTAFFSTDESRIGQMVEF 235
Query: 567 TVSAKV----LSSRKRREKEDRIG 586
V+ ++ L SR R R G
Sbjct: 236 GVTTQIFSNPLDSRTRDYVSGRFG 259
|
Length = 259 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 6e-14
Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 14/219 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
I +N + L+G R++ +++ + P E + I+G GAGKS+L+ A+ L+ G + +
Sbjct: 2 IRAENLSYS-LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+ + P +L + +++PQ+ L F T+++ + + P ++ +
Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQ-MGRIPHRSGREPEEDERIAAQA 119
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLAR------AIVRNNVILVLDEATANVDPKTDLL 512
+ L+ S G++Q + LAR V + L LDE T+ +D
Sbjct: 120 LAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179
Query: 513 IQRTIRKKFAD--CTVLTIAHRLH-TIMDSDKVLVMDSG 548
R R + A VL + H L+ +D+++++ G
Sbjct: 180 TLRLAR-QLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 47/245 (19%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------A 391
+E +N +V + + + + ++ + E +GIVG +G+GKS L AI L
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 392 EVEGVIKIDDID----TEDVPLSKLR-SNISIIPQDPVL-----------FSGTLRKNLD 435
V G I D D +E L K+R I++I QDP+ + LR +
Sbjct: 62 IVGGEILFDGKDLLSLSEK-ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 436 PFEKYPDYVLWTA---LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492
K A L+ V + D L +E S G RQ + +A A+ N
Sbjct: 121 GLSK--KEAKERAIELLELVGIPD---PERRLKSYPHE----LSGGMRQRVMIAMALALN 171
Query: 493 NVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD 546
+L+ DE T +D DLL + ++++ ++ I H L + + +D+V VM
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLL--KELQREK-GTALILITHDLGVVAEIADRVAVMY 228
Query: 547 SGVAV 551
+G V
Sbjct: 229 AGRIV 233
|
Length = 316 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-14
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 19/211 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAI--FRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417
++T+ E + I+G +GAGKS+L+ I F G I I+ +D P + +S
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPASGEILINGVDHTASPPA--ERPVS 74
Query: 418 IIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476
++ Q+ LF+ T+ +N+ P L A Q E + GL + S
Sbjct: 75 MLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQR-EKVEAAAAQVGLAGFLKRLPGELS 131
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPK-----TDLLIQRTIRKKFADCTVLTIAH 531
GQRQ + LAR +VR IL+LDE + +DP L+ Q +K T+L + H
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM---TLLMVTH 188
Query: 532 RLHTIMDS-DKVLVMDSG-VAVVSSFGFFFS 560
D+V+ +D+G +A S S
Sbjct: 189 HPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 45/263 (17%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI---- 399
QN N+ Y +KN+N+ IH E I+G +G GKS+ I + R+ E+ +K
Sbjct: 28 QNLNLWY-GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86
Query: 400 ----DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDYVLWT 447
+I + + +LR+N+ ++ Q P F ++ N+ +K D ++
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEK 146
Query: 448 ALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILVLDEAT 502
+L+ ELKD L+ Y S GQ+Q +C+AR + + +VIL +DE T
Sbjct: 147 SLRGAAIWDELKDR------LHDNAY----GLSGGQQQRLCIARCLAIEPDVIL-MDEPT 195
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKD 562
+ +DP + L ++ +++ D +++ + H M + FF +
Sbjct: 196 SALDPISTLKVEELVQELKKDYSIIIVTHN------------MQQAARISDKTAFFLNGY 243
Query: 563 LIEGTVSAKVLSSRKRREKEDRI 585
+ E + K+ S+ + ED I
Sbjct: 244 VNEYDDTDKIFSNPSDKRTEDYI 266
|
Length = 271 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 47/268 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
+E +N N+ Y + + ++++ I +G +G GKS+L+ R+ +
Sbjct: 25 ALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK--YPDYVLWTAL 449
EG I++D +I + V +++LR + ++ Q P +PF K Y + V L
Sbjct: 84 EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP-----------NPFPKSIYENVVYGLRL 132
Query: 450 QEVELK---DMIME----GAGLNMTV----YEGGTNFSVGQRQLICLARAIVRNNVILVL 498
Q + + D +E GA L V +E S GQ+Q + +ARAI +L+L
Sbjct: 133 QGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF-GF 557
DE T+ +DP + L I+ I + + T++ + H + A VS + F
Sbjct: 193 DEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ-------------AARVSDYTAF 239
Query: 558 FFSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ L+E + + +S +++ ED I
Sbjct: 240 MYMGKLVEYGDTDTLFTSPAKKQTEDYI 267
|
Length = 272 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 1e-13
Identities = 47/205 (22%), Positives = 105/205 (51%), Gaps = 24/205 (11%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--------D 401
Y ++++ +++ I+ + I+G +G GKS+ + + R+ E+E ++++ +
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK----YP----DYVLWTALQEVE 453
I V L++LR +S++ P LF ++ N+ K P D ++ +AL++ +
Sbjct: 76 IYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDAD 135
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
L D I +++ + S GQ+Q +C+ARA+ +L++DE +DP + +
Sbjct: 136 LWDEIKH------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 514 QRTIRKKF--ADCTVLTIAHRLHTI 536
+ I+ ++ T++ ++H LH +
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 17/206 (8%)
Query: 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+N+ + P V+KN+N+ I E + I G TG+GK+SL+ I L EG IK
Sbjct: 43 SNLCLVGAP-VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS---- 97
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
IS Q + GT+++N+ Y +Y + ++ +L++ I +
Sbjct: 98 ---------GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEK 148
Query: 465 NMTVY-EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFA 522
+ TV EGG S GQR I LARA+ ++ + +LD +D T+ I + + K A
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208
Query: 523 DCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ T + + ++ + +DK+L++ G
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 1e-13
Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
++ +N Y G + + +L++ ++ E G++G GAGK++ + + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 399 ID--DIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK 455
I+ I T+ R ++ PQ LF T+R++L + L+ +
Sbjct: 61 INGYSIRTD---RKAARQSLGYCPQFDALFDELTVREHL---------RFYARLKGLPKS 108
Query: 456 DMIMEGAG----LNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
++ E L +T S G ++ + LA A++ +L+LDE T+ +DP +
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 510 DLLIQRTIRKKFADCTV-LT---------IAHRLHTIMDSDKVLVMDS 547
I I + ++ LT + R+ IM K+ + S
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIA-IMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 40/265 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K++ + NV + +K++++ I+G +G GKS+++ +I R+ A V
Sbjct: 4 KVKLEQLNVHFGKN-HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62
Query: 394 EGVIKIDDIDTEDV---PLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKY--------P 441
G I +DD D D P+S +R + ++ Q P F ++ N+ K
Sbjct: 63 TGKILLDDTDIYDRGVDPVS-IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
D ++ ++L+ V L D + + N GG Q+Q +C+AR I ++++DE
Sbjct: 122 DEIVESSLKRVALWDEVKDRLKSNAMELSGG------QQQRLCIARTIAVKPEVILMDEP 175
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF-GFFFS 560
+ +DP + L I+ I + T++ + H + A VS + FF+
Sbjct: 176 ASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ-------------AARVSDYTAFFYM 222
Query: 561 KDLIEGTVSAKVLSSRKRREKEDRI 585
DL+E + K+ ++ ++++ ED I
Sbjct: 223 GDLVECGETKKIFTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 17/222 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKI 399
++ + N Y G +K +NI I E I+G GAGKS+L + L G I
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 400 DD--IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455
D ID L KLR ++ ++ QDP LFS ++ ++ + L E E++
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV------YQDVSFGAVNLKLPEDEVR 119
Query: 456 ---DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
D ++ G+ + S GQ++ + +A +V +LVLDE TA +DP
Sbjct: 120 KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
Query: 513 IQRTIRK--KFADCTVLTIAHRLHTI-MDSDKVLVMDSGVAV 551
I + + + K T++ H + + + D V VM G +
Sbjct: 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
Length = 283 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 19/201 (9%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLR 413
RV+ ++++ + E G +G GAGK++ + I L G I D + +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 414 SNISIIPQDPVLFSG-TLRKNLDPFEKY---PDYVLWTALQEVELKDMIMEGAGLNMTVY 469
I + + P + T R+NL + + L V LKD +
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK------ 125
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD-CTVLT 528
FS+G +Q + +A A++ N +L+LDE T +DP ++ I TVL
Sbjct: 126 ----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 529 IAHRLHTIMD-SDKVLVMDSG 548
+H L I +D++ +++ G
Sbjct: 182 SSHLLSEIQKVADRIGIINKG 202
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 40/255 (15%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKID--D 401
Y + + + ++++ +P E ++G +G+GKS+L+ +I R+ + + G I + +
Sbjct: 14 YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN 73
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI--- 458
I + LR I ++ Q P F P Y + V L+ ++ K ++
Sbjct: 74 IYSPRTDTVDLRKEIGMVFQQPNPF---------PMSIYENVVYGLRLKGIKDKQVLDEA 124
Query: 459 ----MEGAGLNMTV----YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
++GA + V ++ S GQ+Q +C+AR + + I++LDE T+ +DP +
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSA 570
I+ T+ D T+L + M + GFF DLIE +
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRS------------MQQASRISDRTGFFLDGDLIEYNDTK 232
Query: 571 KVLSSRKRREKEDRI 585
++ + K +E ED I
Sbjct: 233 QMFMNPKHKETEDYI 247
|
Length = 252 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 35/227 (15%)
Query: 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEK-IGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
I F+N + +Y S +K+++ I PK + IVG G+GKS++ + + +V G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNI-PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYVL 445
++ D KLR +I I+ Q+P V F L + P+++ V
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG--LENHAVPYDEMHRRVS 124
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL++V++ L YE S GQ+Q + +A + N +++LDEAT+ +
Sbjct: 125 -EALKQVDM---------LERADYEPNA-LSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 506 DP--KTDL--LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
DP + +L L+++ + + T+++I H L M++D V+VM+ G
Sbjct: 174 DPDARQNLLDLVRKVKSEH--NITIISITHDLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKS---SLIAAIFRLAEVEGVIKIDDIDTEDVPL 409
G + ++++ + P E +G++G GAGK+ +LI ++ + G + D +P
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPP 73
Query: 410 SKL------RS--NISIIPQ----DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
++ R+ + P + V R L P +E +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRA--RKEEREARERAR 131
Query: 458 -IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQ- 514
++E GL N S GQ++ + +ARA+ +L+LDE A ++P+ T+ L +
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 515 -RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
R +R + T+L I H + +M +D+++V++ G
Sbjct: 192 IRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 39/248 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPK--EKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
IE +N +Y +++ H K E + I+G G+GKS+ + I L E E G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 398 KID-DIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYV 444
ID D+ TE+ + +R I ++ Q+P V F G K + P E+ + V
Sbjct: 65 IIDGDLLTEE-NVWDIRHKIGMVFQNPDNQFVGATVEDDVAF-GLENKGI-PHEEMKERV 121
Query: 445 LWTALQEVELKDMIM-EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
AL+ V ++D E A L S GQ+Q + +A A+ I++LDEAT+
Sbjct: 122 N-EALELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATS 169
Query: 504 NVDPKTDL-LIQ--RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG-VAVVSSFGFFF 559
+DP+ L LI+ + IR + TV++I H L + SD+VLVM +G V S+ F
Sbjct: 170 MLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228
Query: 560 SK--DLIE 565
S+ DL++
Sbjct: 229 SRGNDLLQ 236
|
Length = 279 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 27/224 (12%)
Query: 340 KIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
I ++ + RY +K+++ +++ E + IVG G+GKS+L + L E G I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP-VLFSGT---------LRKNLDPFEKYPDYVLWT 447
+ + + + +R + ++ Q+P F G L P E+ + V
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQ- 123
Query: 448 ALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
AL++V ++D + E L S GQ+Q + +A + I++LDEAT+ +D
Sbjct: 124 ALRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
Query: 507 PKTDLLIQRTIR--KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
P+ + T+R K+ TVL+I H L +D+V+VM+ G
Sbjct: 173 PRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 5e-13
Identities = 57/261 (21%), Positives = 120/261 (45%), Gaps = 35/261 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
+E ++ ++ Y R + ++++ I ++G +G GKS+ + +I R+ A E
Sbjct: 22 LEVKDLSI-YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP--------DYV 444
G I + +I ++ + LR I ++ Q P F ++ N+ KY D +
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI 140
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ +L + L D + + ++ + S GQ+Q +C+AR + +L+LDE +
Sbjct: 141 VEESLTKAALWDEVKD------RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
+DP ++ I+ I + + +++ + H M + V FF + DL+
Sbjct: 195 LDPISNAKIEELITELKEEYSIIIVTHN------------MQQALRVSDRTAFFLNGDLV 242
Query: 565 EGTVSAKVLSSRKRREKEDRI 585
E + ++ +S K+++ ED I
Sbjct: 243 EYDQTEQIFTSPKQQKTEDYI 263
|
Length = 268 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 6e-13
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 44/202 (21%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI---FRLAEVEGVIKIDDIDTEDVPLSK 411
+++KN++ P E I+G +GAGKS+L+ A+ V G + I+ +
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLDKRS 79
Query: 412 LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE 470
R I +PQD +L T+R+ L + A +L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM----------FAA----KLR-------GL------ 112
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--CTVLT 528
S G+R+ + +A +V N +L LDE T+ +D + L + +R + AD T++
Sbjct: 113 -----SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR-RLADTGRTIIC 166
Query: 529 IAHRLHTIMDS--DKVLVMDSG 548
H+ + + DK+L++ G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 8e-13
Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 15/201 (7%)
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419
++ + E + I+G +GAGKS+L+ I E G IK++D + + +S++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSML 75
Query: 420 PQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVG 478
Q+ LF+ T+R+N+ +P L A Q+ ++ D + G+ + S G
Sbjct: 76 FQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVD-AAQQVGIADYLDRLPEQLSGG 132
Query: 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDL----LIQRTIRKKFADCTVLTIAHRLH 534
QRQ + LAR +VR N IL+LDE + +DP L+++ ++ T+L + H L
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMVTHHLS 190
Query: 535 TIMDS-DKVLVMDSG-VAVVS 553
++ V+ G + VVS
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+N P V+KN++ + + + + G TG+GKSSL+ I L EG IK
Sbjct: 432 SNFSLYVTP-VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHS---- 486
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
IS PQ + GT++ N+ Y +Y + ++ +L++ I
Sbjct: 487 ---------GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEK 537
Query: 465 NMTVY-EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFA 522
+ TV EGG S GQR I LARA+ ++ + +LD ++D T+ I + + K +
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597
Query: 523 DCTVLTIAHRLHTIMDSDKVLVMDSGV 549
+ T + + +L + +DK+L++ GV
Sbjct: 598 NKTRILVTSKLEHLKKADKILLLHEGV 624
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 33/230 (14%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEGVI 397
+N N+ Y +++ ++N+ I+ +E +G +G GKS+ + R+ +V+G +
Sbjct: 9 KNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 398 KIDDID--TEDVPLSKLRSNISIIPQDPVLFSGTLRKN---------LDPFEKYPDYVLW 446
ID ID + D + LR+ + ++ Q P F ++ N L +K D ++
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE 127
Query: 447 TALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
+L V EL D + + A S GQ+Q +C+ARAI +L++DE
Sbjct: 128 KSLTSVGLWEELGDRLKDSA----------FELSGGQQQRLCIARAIAVKPTMLLMDEPC 177
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +DP +I+ I++ + T++ + H + SD+V SG V
Sbjct: 178 SALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 28/168 (16%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKL--- 412
V+KN++ T+ P E +G+VG +G+GKS+ A+ RL +G I D PL L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFD-----GQPLHNLNRR 355
Query: 413 -----RSNISIIPQDPVLFSGTLRKNLDPFE--------KYPDYVLWTALQEVELKDMIM 459
R I ++ QDP + +L L+ + P L A +E ++ +M
Sbjct: 356 QLLPVRHRIQVVFQDP---NSSLNPRLNVLQIIEEGLRVHQPT--LSAAQREQQVIA-VM 409
Query: 460 EGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
E GL+ T + FS GQRQ I +ARA++ +++LDE T+++D
Sbjct: 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 38/230 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
+E +N + + + ++++ I E + ++G +G GK++L IA + + G I
Sbjct: 6 LEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEI 62
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKD 456
+D D DVP K R I ++ Q LF T+ +N+ + V + E+K
Sbjct: 63 LLDGEDITDVPPEK-R-PIGMVFQSYALFPHMTVEENV----AFGLKVRKKLKKA-EIKA 115
Query: 457 MIMEG-AGLNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ E + + + S GQ+Q + LARA+V +L+LDE + +D K +
Sbjct: 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175
Query: 514 QRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDSGVAV 551
++ +++ + L + D SD++ VM+ G
Sbjct: 176 RKELKE---------LQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
|
Length = 352 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 38/220 (17%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVP 408
SG V+K ++ T+H E ++G GAGKS+L IA I + G ++I P
Sbjct: 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--VPPDSGTLEIGG-----NP 74
Query: 409 LSKLRSN------ISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLW----TALQEVELKDM 457
++L I ++PQ+P+LF ++++N +L+ ++K +
Sbjct: 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKEN----------ILFGLPKRQASMQKMKQL 124
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP-KTDLLIQR 515
+ G L++ G V RQ++ + R ++R++ IL+LDE TA++ P +T+ L R
Sbjct: 125 LAALGCQLDLDSSAGSLE--VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182
Query: 516 TIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
IR+ A ++ I+H+L I +D++ VM G +S
Sbjct: 183 -IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221
|
Length = 510 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-12
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 51/279 (18%)
Query: 332 NEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391
++ P K E N Y G + +KN+N+ +H K+ ++G +G GKS+ + R+
Sbjct: 8 GDVSPTQQKSEVNKLNF-YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH 66
Query: 392 EV------EGVIKI----DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN-------- 433
++ EG I + +I + +V ++R IS++ Q P F ++ +N
Sbjct: 67 DLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIR 126
Query: 434 -------LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
L+ E+ + + AL + E+KD + + A N S GQ+Q +C+A
Sbjct: 127 GVKRRSILE--ERVENALRNAALWD-EVKDRLGDLA----------FNLSGGQQQRLCIA 173
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
RA+ + IL+ DE T+ +DP I+ I T+L + H M
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN------------MQ 221
Query: 547 SGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
V + + +LIE + + K ++ ED I
Sbjct: 222 QAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTEDYI 260
|
Length = 265 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 3e-12
Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 34/245 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI--------DDIDTEDVP 408
+KN+N++I E I+G +G GKS+ I + + ++ +K+ +I V
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNL--------DPFEKYPDYVLWTALQEVELKDMIME 460
L +LR NI ++ Q F ++ N+ +K ++ +L++V L D + +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
++ + S GQ+Q +C+ARA+ N +L++DE T+ +DP + I+ I K
Sbjct: 148 ------RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 521 FADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRRE 580
T++ + H M V FF+ +L+E + K+ S+ +
Sbjct: 202 KEKYTIVIVTHN------------MQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQR 249
Query: 581 KEDRI 585
D I
Sbjct: 250 TLDYI 254
|
Length = 259 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI-AAIFRLAEVEGVIKID 400
E N NV Y +++ +++ + E ++GR G GK++L+ + L G I++D
Sbjct: 2 EVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60
Query: 401 DID-TEDVPLSKLRSNISIIPQDPVLFSG-TLRKNL--------DPFEKYPDYVLWTALQ 450
D T+ P + R+ I+ +PQ +F T+ +NL K PD + L
Sbjct: 61 GEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIY--ELF 118
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
V LK+M+ G + S GQ+Q + +ARA+V +L+LDE T + P
Sbjct: 119 PV-LKEMLGRRGG----------DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII 167
Query: 511 LLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSS 554
I R IR+ +L + L + +D+ VM+ G VV+S
Sbjct: 168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG-RVVAS 213
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 28/207 (13%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD----IDTEDV-PLS 410
+KN+++ + + I+G TG+GKS L+ I G IK D ++ +D+ L
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIA------GFIKPDSGKILLNGKDITNLP 67
Query: 411 KLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQE-VELKDMIMEGAG-LNMT 467
+ +IS +PQ+ LF T+ KN+ Y L + E++ ++E A L +
Sbjct: 68 PEKRDISYVPQNYALFPHMTVYKNIA-------YGLKKRKVDKKEIERKVLEIAEMLGID 120
Query: 468 --VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQ--RTIRKKFA 522
+ S G++Q + +ARA+V N IL+LDE + +D +T + L + + IRK+F
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF- 179
Query: 523 DCTVLTIAHRLHTI-MDSDKVLVMDSG 548
TVL + H +DKV +M +G
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLR 413
R + L++ I + + ++G GAGKS+L+ AI L G I ID +D ++K
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 414 SNISIIPQDPVLFSG---TLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
+ ++ + QDP+ + T+ +NL E + L +AL E A L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG---- 135
Query: 470 EGGTN--------FSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRT--IR 518
G N S GQRQ + L A + IL+LDE TA +DPKT + +++ T I
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 519 KKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
++ T L + H + +D ++++++ SG
Sbjct: 196 EEH-KLTTLMVTHNMEDALDYGNRLIMLHSG 225
|
Length = 263 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 7e-12
Identities = 54/252 (21%), Positives = 111/252 (44%), Gaps = 48/252 (19%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEG--VIKIDDIDTEDVP 408
+K +++ + E ++G +G GKS+ + + R+ + G ++ +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT- 467
+ +LR + ++ Q P F PF Y + + L V+ K ++ E ++
Sbjct: 81 VVQLRKQVGMVFQQPNPF---------PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ 131
Query: 468 ----------VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR-- 515
++E + S GQ+Q +C+AR + +++LDE T+ +DP + I+
Sbjct: 132 AAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 516 -TIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVL 573
+R ++ T++ + H +H SDK FF + +LIE + ++
Sbjct: 192 LELRDQY---TIILVTHSMHQASRISDKT-------------AFFLTGNLIEFADTKQMF 235
Query: 574 SSRKRREKEDRI 585
+ K +E ED I
Sbjct: 236 LNPKEKETEDYI 247
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-11
Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 41/303 (13%)
Query: 264 ILISFFFFADIGGKVGLAVTQT-MTLMGVVQWAMRQ----AAEVENHMISVKRLVEYTKL 318
++SF F +GG + A T ++L V+++ + + N +S+KRL E L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-L 596
Query: 319 EPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS-GPR-VIKNLNITIHPKEKIGIVGRT 376
E L PN + P L I +N + S R + N+N+ + + IVG T
Sbjct: 597 AEERVLLPN----PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGST 652
Query: 377 GAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL-- 434
G GK+SLI+A+ L E+ D V +R ++ +PQ +F+ T+R N+
Sbjct: 653 GEGKTSLISAM--LGELPPR-----SDASVV----IRGTVAYVPQVSWIFNATVRDNILF 701
Query: 435 -DPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491
PF+ +Y + TALQ D+ + G + E G N S GQ+Q + +ARA+
Sbjct: 702 GSPFDPERYERAIDVTALQ----HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS 757
Query: 492 NNVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
N+ + + D+ + +D D I+ +R K T + + ++LH + D+++++
Sbjct: 758 NSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGK----TRVLVTNQLHFLSQVDRIILVH 813
Query: 547 SGV 549
G+
Sbjct: 814 EGM 816
|
Length = 1622 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 50/236 (21%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E + + + G V++++N+++ E + I+G +G GKS+L+ I L + G +
Sbjct: 3 LLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW-TALQEVE--LK 455
+D P++ +I + Q+ L P W T L V L+
Sbjct: 62 LDGR-----PVTGPGPDIGYVFQEDALL---------P---------WLTVLDNVALGLE 98
Query: 456 DMIMEGAGLNMTVYE-----GGTNF--------SVGQRQLICLARAIVRNNVILVLDEAT 502
A E G F S G RQ + +ARA+ +L+LDE
Sbjct: 99 LRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158
Query: 503 ANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLH-TIMDSDKVLVMDSGVAVV 552
+D T D L++ + ++ TVL + H + + +D+V+V+ + +
Sbjct: 159 GALDALTREELQDELLR--LWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 37/227 (16%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E +N R+ G + +LN+ I E + ++G +G GK++ + I L E G I
Sbjct: 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
I D D+P +I+++ Q+ L F LRK P ++ + V
Sbjct: 59 IGGRDVTDLPPKD--RDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--PKDEIDERVREV 114
Query: 448 A--LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
A LQ L L+ S GQRQ + L RAIVR + ++DE +N+
Sbjct: 115 AELLQIEHL---------LDRKP----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
Query: 506 DPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549
D K + ++ +++ + T + + H M +D++ VM+ G
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 1e-11
Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 46/261 (17%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEGVI 397
Q+ N+ Y + +KN+N+ + ++G +G GK++ + AI R+ A V G I
Sbjct: 8 QDVNI-YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 398 KID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK---YPDYVLWTALQEV 452
+D DI V +R + ++ Q P +PF + + V L +
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKP-----------NPFPTMSVFDNVVAGLKLAGI 115
Query: 453 ELKDMIME-------GAGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+D +ME GA L V + T S GQ+Q +C+ARA+ IL++DE
Sbjct: 116 RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSK 561
T+ +DP + I+ + T++ + H +H V + FF
Sbjct: 176 TSALDPASTARIEDLMTDLKKVTTIIIVTHNMH------------QAARVSDTTSFFLVG 223
Query: 562 DLIEGTVSAKVLSSRKRREKE 582
DL+E + ++ ++ + E
Sbjct: 224 DLVEHGPTDQLFTNPRDERTE 244
|
Length = 252 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
IE ++ NV Y + + ++++ I + ++G +G GKS+ + I R+ A VE
Sbjct: 40 IEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE 98
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLW 446
G + ++ DV LR I ++ Q P F ++ N + ++ D +
Sbjct: 99 GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVE 158
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+L+ L D + + G + S GQ+Q +C+ARAI + ++++DE + +D
Sbjct: 159 ESLRRAALWDEV------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 507 PKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552
P I+ I + + TV+ + H + SDK V +G +V
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259
|
Length = 285 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-11
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
KIE ++ V + V+ +N+ I ++G +G+GKS+L+ RL E V
Sbjct: 3 KIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDP-----------VLFSGTLRKNLDPFEKYPD 442
G + +D D + + +LR + ++ Q P V L + + ++ +
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 443 YVLWTALQEVEL----KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
V W AL++ +L KD + AG S GQ+Q +C+ARA+ +L+
Sbjct: 122 RVRW-ALEKAQLWDEVKDRLDAPAG----------KLSGGQQQRLCIARALAFQPEVLLA 170
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
DE TAN+DP+ I+ + D T++ + H
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNL-NITIH-PKEKI-GIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ N + G + I+ L N+++H P +I G++G +GAGKS+LI + L G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 397 IKIDDIDT---EDVPLSKLRSNISIIPQD-PVLFSGTLRKNLD-PFEKYPDYVLWTALQE 451
+ +D D + L+K R I +I Q +L S T+ N+ P E + T E
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE-----LDNTPKDE 116
Query: 452 VELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
++ K ++ GL +N S GQ+Q + +ARA+ N +L+ DEAT+ +DP T
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 511 ---LLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
L + + I ++ T+L I H + + D V V+ +G
Sbjct: 177 QSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNG 217
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
I +N N Y G +V+ ++N+ I+P E + + G +G+GK++L+ I L V EG
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLF-SGTLRKNLD-PFEKYPDYVLWTALQE 451
+K+ + L +LR NI I Q L T R+N+ E P+ + +
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNL---SYQEA 118
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
E ++E GL + N S GQ+Q + +ARA+V +++ DE TA +D K+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178
Query: 512 LIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++K + CT+L + H + I+D +D+++ M+ G
Sbjct: 179 DVVELMQKLAREQGCTILIVTHD-NRILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 32/261 (12%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+ ++ +V Y + + ++++ I K +G +G GKS+ + + R+ V
Sbjct: 19 KMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77
Query: 394 EGVIKIDDIDTED--VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
G I +D D D + + +LR+ + ++ Q P F ++ +N+ Y + A +
Sbjct: 78 TGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV----AYGPRIHGLARSK 133
Query: 452 VELKDMI---MEGAGLNMTV----YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
EL +++ + AGL V +E GT S GQ+Q +C+ARAI + ++++DE +
Sbjct: 134 AELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
+DP ++ I + + T++ + H M V FF +L+
Sbjct: 194 LDPIATAKVEELIDELRQNYTIVIVTHS------------MQQAARVSQRTAFFHLGNLV 241
Query: 565 EGTVSAKVLSSRKRREKEDRI 585
E + K+ ++ +D I
Sbjct: 242 EVGDTEKMFTNPDDPRTQDYI 262
|
Length = 267 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 8/217 (3%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E + Y S + +++++ E G++G GAGK++L+ I L G + I
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 400 DDIDTEDVPLSKLRSNISIIP-QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D +DT P S +R I ++ + + T R+NL F + L + + ++
Sbjct: 62 DGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARL--NGLSRKEIKARIAEL- 117
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ L + FS G +Q + +ARA+V + ILVLDE T+ +D +T I+
Sbjct: 118 SKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 519 K-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+ K V+ +H + + D+V+V+ G V+
Sbjct: 178 QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 4e-11
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 30/215 (13%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKL- 412
+ +++ ++ P E G++G GAGK++L I G + D D +P ++
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 413 -----RSNISIIPQDPVLFSG-TLRKNLD----PFEKYPDYVLWTALQEVELKDMIME-- 460
R+ Q P LF T+ +N+ + +E E ++ E
Sbjct: 74 RLGIGRTF-----QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128
Query: 461 -----GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQ 514
+ S GQ++ + +ARA+ + +L+LDE A ++P+ T+ L +
Sbjct: 129 ERVGLADLADRPA----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 515 RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ TVL + H + +M +D+V V+D G
Sbjct: 185 LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 89/472 (18%), Positives = 171/472 (36%), Gaps = 51/472 (10%)
Query: 98 IHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQV--SGAL 155
+ + + ++ +PL S R+L + D+ + + + Q ++ S A
Sbjct: 83 LRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAAY 141
Query: 156 IVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRS--PVFTHLNACLHGLP 213
+ LS +F + V+ ++ W ++ ++ K++ + + L G
Sbjct: 142 LAYLSP-KMFLLTVVWIVVTIW---GGFVLMARVYKHMAAARETEDKLQNDYQTILEGRK 197
Query: 214 TIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD 273
+ + V Y D H+ + N +++ ++ L I + F+
Sbjct: 198 ELTLNRERAEYVHNNLYIPDAQEYRHHI-IRANTFHLLAVNWSNIMLLGLIGLVFWLALS 256
Query: 274 IG-GKVGLAVTQTMTLM----GVVQWA----MRQAAEVENHMISVKRLVEYTKLEPEGNL 324
+G +A T + L+ ++ A+V + I+ L Y
Sbjct: 257 LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY----KADFP 312
Query: 325 SPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
P P +E +N Y + +N+TI E + ++G G+GKS+L
Sbjct: 313 RPQAF------PDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA 366
Query: 385 AAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443
+ L G I +D L R S + D LF L + +
Sbjct: 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEK 426
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
W E+ K + +G N S GQ++ + L A++ ILVLDE A
Sbjct: 427 --WLQRLELAHKTSLNDGRFSN-------LKLSTGQKKRLALLLALLEERDILVLDEWAA 477
Query: 504 NVDP-------KTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ DP + L + + K T+ I+H H + +D++L M +G
Sbjct: 478 DQDPAFRREFYQVLLPLLKEQGK-----TIFAISHDDHYFIHADRLLEMRNG 524
|
Length = 546 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-11
Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 68/192 (35%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IE +N + Y ++K++++TI+P ++IG+VGR GAGKS+L+ I L EG++
Sbjct: 1 IELENLSKTYGGKL-LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
I Q SG
Sbjct: 60 GS-----------TVKIGYFEQ----LSG------------------------------- 73
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G++ + LA+ ++ N +L+LDE T ++D ++ ++ +++
Sbjct: 74 ------------------GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 520 KFADCTVLTIAH 531
TV+ ++H
Sbjct: 116 Y--PGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-11
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRS 414
+ ++ T+ P E G++G GAGK++ + + L E + G +D D P + R
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EARR 78
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG-LNMTVY--E 470
+ + L+ T R+NL+ F L+ EL + E A L M
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGL------YGLKGDELTARLEELADRLGMEELLDR 132
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-----KFADCT 525
FS G RQ + +ARA+V + +L+LDE T + D++ R +R+ +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL----DVMATRALREFIRQLRALGKC 188
Query: 526 VLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+L H + + D+V+V+ G V
Sbjct: 189 ILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSK-L 412
+V+ ++++ ++ E +G++G GAGK++ I L G I +DD D +P+ K
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 413 RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471
R I +PQ+ +F T+ N+ + + L A ++ EL ++ E ++T
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEE---FHITHLRD 134
Query: 472 --GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ S G+R+ + +ARA+ N ++LDE A VDP + IQR I+
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
|
Length = 243 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 31/212 (14%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVI 397
IE +N +VR +G +++ +L+ ++P E IVG GAGK++L++ + E G +
Sbjct: 32 IELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLL--TGEHPPSSGDV 88
Query: 398 KI--DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL--WTA----- 448
+ + + +LR I ++ S L + E D VL + A
Sbjct: 89 TLLGRRFGKGET-IFELRKRIGLV-------SSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 449 ---LQEVELKDMIMEGAGLNMTVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATA 503
L +L L + S G+++ + +ARA+V++ +L+LDE
Sbjct: 141 QEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 504 NVDPKTDLLIQRTIRKKFADC---TVLTIAHR 532
+D + + + A +L + H
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL-- 412
V+ N++++I E +G++GR+G GKS+L + L + +G + L +L
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF-----RGQDLYQLDR 80
Query: 413 ------RSNISIIPQD---PVLFSGTLRKNL-DPFEKYPDYVLWTALQEVELKDMI---M 459
R ++ ++ QD V T+R+ + +P T+L E E K I +
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL------TSLDESEQKARIAELL 134
Query: 460 EGAGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ GL + S GQ Q I +ARA+ ++VLDEA +N+D +I +R
Sbjct: 135 DMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 519 KKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
K L I H L + +V VMD G
Sbjct: 195 KLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (153), Expect = 5e-11
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 27/242 (11%)
Query: 341 IEFQNTNVRYLSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEG 395
+E +N +Y V + ++ +I E + I+G+ G+GKS+ LI +F E EG
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEG 62
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDP-VLFSGTLRKNLDPFEKYPDYVLWTALQEVEL 454
+KID + LR I ++ Q+P F G ++ D Q +
Sbjct: 63 KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED--------DVAFGMENQGIPR 114
Query: 455 KDMI--MEGAGLNMTVYEGGT----NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
++MI ++ A L + + + T S GQ+Q + +A I I++LDE+T+ +DP
Sbjct: 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174
Query: 509 TDLLIQRTIR--KKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV---VSSFGFFFSKDL 563
I R I K+ TVL+I H L SD++LVM +G + S F S+D+
Sbjct: 175 GRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDM 234
Query: 564 IE 565
+E
Sbjct: 235 VE 236
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-11
Identities = 47/172 (27%), Positives = 89/172 (51%), Gaps = 20/172 (11%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSK-- 411
++ +LN+TI + I+G +G+GKS+L+ I L + + G + ++ +T + K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 412 --LRSNISIIPQDPVLF-SGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
R + + Q+ L + T+ +NLD + Y + ++ E K +E GLN+
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLK----YKKLSKKEKREKKKEALEKVGLNLK 127
Query: 468 ----VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQ 514
+YE S G++Q + LARAI++ +++ DE T ++DPK D ++
Sbjct: 128 LKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 8e-11
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 20/220 (9%)
Query: 341 IEFQNTNVRYLSGPRVI--KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
+E + R+ P V+ ++++++ E ++G GAGKS+L+ +F L + G I
Sbjct: 5 LEMRGITKRF---PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 398 KIDDIDTE-DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQE 451
++D + P +R I ++ Q +L L E P ++
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLV-----PTLTVAENIILGLEPSKGGLIDRRQ 116
Query: 452 VELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-T 509
+ + E GL + + SVG++Q + + +A+ R +L+LDE TA + P+
Sbjct: 117 ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
D L + R T++ I H+L +M +D+V V+ G
Sbjct: 177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 9e-11
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 40/246 (16%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKID--DIDTEDVP 408
+ +++ KE ++G +G GKS+ + + R+ + + G IK + +I +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPD--YVLWTA-LQEVELKDMIMEGAGLN 465
L +LR + ++ Q P F PF Y + Y L A +++ EL D +E +
Sbjct: 80 LVELRKEVGMVFQQPTPF---------PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ 130
Query: 466 MTVYE--------GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
+++ FS GQ+Q IC+ARA+ +++LDE T+ +DP + I+ T+
Sbjct: 131 AAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRK 577
+ T + + H L + F + DLIE + ++ + K
Sbjct: 191 MELKHQYTFIMVTHNLQ------------QAGRISDQTAFLMNGDLIEAGPTEEMFIAPK 238
Query: 578 RREKED 583
++ D
Sbjct: 239 KQITSD 244
|
Length = 251 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IE +N + + V+K +++++ E + I+G +G+GKS+L+ + L E + G I +
Sbjct: 3 IEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 400 DDID-TEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDM 457
D D + + KLR + ++ Q LF T+ +N+ P V + E K +
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV---TLAPVKVKKLSKAEAREKAL 118
Query: 458 -IMEGAGLN--MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
++E GL Y S GQ+Q + +ARA+ + +++ DE T+ +DP
Sbjct: 119 ELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169
|
Length = 240 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 35/228 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + + V+K +++T+ E + I+G +G+GKS+L+ I L E G I I
Sbjct: 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59
Query: 400 DD--IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY---PDYVLWTALQEVEL 454
D + + +++LR + ++ Q LF +L E P V + E E
Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEAEE 114
Query: 455 KDM-IMEGAGL--NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-- 509
+ + ++E GL Y S GQ+Q + +ARA+ N +++ DE T+ +DP+
Sbjct: 115 RALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172
Query: 510 ---DLLIQRTIRKKFADCTVLTIAHRLHTIMD-----SDKVLVMDSGV 549
D++ T++ + H M +D+V+ MD G
Sbjct: 173 EVLDVMKDLAEEG----MTMVVVTHE----MGFAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-10
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR--KKFADCT 525
V + S GQ+Q I +ARAI+RN IL+LDEAT+++D K++ L+Q+TI K +
Sbjct: 573 VGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632
Query: 526 VLTIAHRLHTIMDSDKVLVM 545
+ IAHRL TI ++ + V+
Sbjct: 633 TIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 56/239 (23%), Positives = 116/239 (48%), Gaps = 39/239 (16%)
Query: 366 PKEKI-GIVGRTGAGKSSLIAAIFRL------AEVEGVIKIDDID--TEDVPLSKLRSNI 416
K KI ++G +G+GKS+ + ++ R+ A V G I ID +++ + ++R +I
Sbjct: 44 EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHI 103
Query: 417 SIIPQDPVLFSGTLRKNLDPF---------EKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
++ Q P F+ ++ +N+ F +K D ++ T+L++ L D + +
Sbjct: 104 GMVFQRPNPFAKSIYENI-TFALERAGVKDKKVLDEIVETSLKQAALWDQVKD------D 156
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
+++ S GQ+Q +C+ARAI IL++DE + +DP + + ++ T+ + + T++
Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTII 216
Query: 528 TIAHRLHTIMDSDKVLVMDSGVAVVSSF-GFFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ H + A S + FF+ DLIE + + ++ K + D +
Sbjct: 217 IVTHNMQQ-------------AARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDYV 262
|
Length = 267 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAI--FRLAEVEGVIKIDDIDTEDVPLSKLRSNISI 418
++T+ E++ I+G +GAGKS+L+ I F L G + ++ D P S+ R +S+
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTPASGSLTLNGQDHTTTPPSR-RP-VSM 75
Query: 419 IPQDPVLFSG-TLRKN----LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
+ Q+ LFS T+ +N L+P K A Q +L I G+ +
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKL------NAAQREKLHA-IARQMGIEDLLARLPG 128
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
S GQRQ + LAR +VR IL+LDE + +DP
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
|
Length = 232 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 36/192 (18%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKI 399
I +N ++ Y +++N+++T++P E+IG+VGR GAGKS+L+ + L G +
Sbjct: 4 ITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 400 ----------------------DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF 437
D + L +L + + L L+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE-- 120
Query: 438 EKYPDYVLWTALQEVELKDMIMEGAGL---NMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
+ WT E + G G + V ++ S G R+ + LARA++
Sbjct: 121 ALLEELDGWTLEARAE---EALLGLGFPDEDRPV----SSLSGGWRRRVALARALLEEPD 173
Query: 495 ILVLDEATANVD 506
+L+LDE T ++D
Sbjct: 174 LLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPL-S 410
G RV++++++T++ E +G++G GAGK++ + + + G I IDD D +PL +
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 411 KLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
+ R I +PQ+ +F ++ NL + D + +A Q + + +ME +
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL--SAEQREDRANELMEEFHIEHLRD 132
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
G + S G+R+ + +ARA+ N ++LDE A VDP + + I+R I
Sbjct: 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180
|
Length = 241 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 70/240 (29%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
+E +N + Y G ++++++++ E + +VG +G GKS+L+ I L G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW-TALQEVELK 455
+ +D P++ + + Q L P W T L V L
Sbjct: 61 VLVD-----GEPVTGPGPDRGYVFQQDALL---------P---------WLTVLDNVAL- 96
Query: 456 DMIMEGAGLNMT------VYE---------GGTNF--------SVGQRQLICLARAIVRN 492
GL + E G + F S G RQ + LARA+ +
Sbjct: 97 -------GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVD 149
Query: 493 NVILVLDEATANVDPKTDLLIQRTI------RKKFADCTVLTIAHRLH-TIMDSDKVLVM 545
+L+LDE + +D T +Q + K TVL + H + + +D+V+V+
Sbjct: 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGK----TVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 47/268 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+E + + Y + + ++++ + ++G +G GKS+ + + R+ A V
Sbjct: 6 KMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 394 EGVIKIDDIDTED--VPLSKLRSNISIIPQDPVLFSGTLRKNL-------------DPFE 438
EG I +D + D V + +LR + ++ Q P F ++ +N+ E
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE 124
Query: 439 KYPDYVLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
+ + AL + E+KD + E A GL S GQ+Q +C+ARA+ +L+
Sbjct: 125 RVERSLRHAALWD-EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLL 172
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGF 557
+DE + +DP I+ I + A T++ + H M V F
Sbjct: 173 MDEPASALDPIATQKIEELIHELKARYTIIIVTHN------------MQQAARVSDVTAF 220
Query: 558 FFSKDLIEGTVSAKVLSSRKRREKEDRI 585
F+ LIE + ++ + + ++ ED I
Sbjct: 221 FYMGKLIEVGPTEQIFTRPREKQTEDYI 248
|
Length = 253 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 16/173 (9%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSK-L 412
+V+ +++++ E +G++G GAGK++ I L + G I +D D +P+ K
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRA 73
Query: 413 RSNISIIPQDPVLFSG-TLRKNLD---PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV 468
R I +PQ+ +F T+ +N+ +E +L++++ E ++T
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK-----KEREEKLEELLEE---FHITH 125
Query: 469 YEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
++ S G+R+ + +ARA+ N L+LDE A VDP IQ+ I+
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 48/204 (23%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLR 413
+ + ++ +I E +G+VG +G GKS+L I L E G I + D + + R
Sbjct: 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERR 86
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
E+ + L++V L + L +E
Sbjct: 87 ------------------------ERVLEL-----LEKVGLPEEF-----LYRYPHE--- 109
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLT 528
S GQRQ I +ARA+ N ++V DE + +D +LL + ++++ T L
Sbjct: 110 -LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL--KDLQEEL-GLTYLF 165
Query: 529 IAHRLHTI-MDSDKVLVMDSGVAV 551
I+H L + SD++ VM G V
Sbjct: 166 ISHDLSVVRYISDRIAVMYLGKIV 189
|
Length = 268 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 44/234 (18%)
Query: 341 IEFQNTNVRYLSG-----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR--LAEV 393
I+ +N + +Y S + ++N+ + E + I+GR G+GKS+ IA L
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKST-IAKHMNALLIPS 63
Query: 394 EGVIKIDDIDTEDVP-LSKLRSNISIIPQDP------------VLFSGTLRKNLDPFE-- 438
EG + +D +DT D L +R+ ++ Q+P V F G + P E
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPENLGIPPEEIR 122
Query: 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTN--FSVGQRQLICLARAIVRNNVIL 496
+ D +L++V M Y S GQ+Q + +A + +
Sbjct: 123 ERVDE----SLKKV------------GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
Query: 497 VLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ DE TA +DP + TI++ K T++ I H + +++D+++VMDSG
Sbjct: 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220
|
Length = 280 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 48/209 (22%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLR 413
RV+ ++++ + P + + ++G GAGKS+L+ + L A EGVIK + KLR
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR 68
Query: 414 SNISIIPQ----DPVL---FSGTLRKNLDPFEKYPDYVLWTALQEVE---LKDMIMEGAG 463
I +PQ D L + LR L P K D + AL+ V+ L D M+
Sbjct: 69 --IGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALKRVQAGHLIDAPMQ--- 119
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIR 518
S G+ Q + LARA++ +LVLDE T VD DL+ Q +R
Sbjct: 120 ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ--LR 167
Query: 519 KKFADCTVLTIAHRLHTIM-DSDKVLVMD 546
++ DC VL ++H LH +M +D+VL ++
Sbjct: 168 REL-DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 38/243 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIFRL------AE 392
+ +N NV Y S +KN+ + I PK +I +G +G GKS+++ RL
Sbjct: 10 VLRTENLNVYYGSF-LAVKNVWLDI-PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 393 VEGVIKIDD--IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL------DPFEKYPDYV 444
VEG + + DV ++R I ++ Q P F ++ N+ + ++ D +
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILVLDEATA 503
+ +L++ L D + + + + G + S GQ+Q +C+ARAI V+ VIL +DE +
Sbjct: 128 VERSLRQAALWDEVKD------KLKQSGLSLSGGQQQRLCIARAIAVQPEVIL-MDEPCS 180
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + L I+ + + T++ + H + A VS FF+ +L
Sbjct: 181 ALDPISTLRIEELMHELKEQYTIIIVTHNMQQ-------------AARVSDMTAFFNVEL 227
Query: 564 IEG 566
EG
Sbjct: 228 TEG 230
|
Length = 264 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 5e-10
Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 40/248 (16%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDID-----TE 405
+K +N I K I+G +G GKS+ + AI R+ ++ G + D D T+
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNL--DPF------EKYPDYVLWTALQEVELKDM 457
+V LR I ++ Q P F ++ N+ P +K + ++ +L++ L D
Sbjct: 115 EV---LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE 171
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
+ + N S GQ+Q +C+AR + IL+LDE T+ +DPK I+ I
Sbjct: 172 VSDRLDKN------ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI 225
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRK 577
++ T++ + H M V FF+ L+E +A++ ++ K
Sbjct: 226 QELRGSYTIMIVTHN------------MQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPK 273
Query: 578 RREKEDRI 585
R ED I
Sbjct: 274 DRMTEDYI 281
|
Length = 286 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-10
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 14/189 (7%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKID--DIDTED 406
Y GP V+K LN E + ++G GAGKS+L+ + L G + ID +D
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 407 VPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AG 463
L + R + ++ QDP LF+ + + L L E E++ + E
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTA 114
Query: 464 LNMTVYEGG--TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521
+ + S G+++ + +A A+ +L+LDE TA +DP + +R+
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 522 ADCTVLTIA 530
A+ + I+
Sbjct: 175 AEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-10
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKI 399
+EF+N + Y G ++K+L+ I ++I IVG GAGKS+L+ + L + G +K+
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 400 DDIDTEDVPLSKLRSNISI--IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
+ I Q R LDP +K L + + +++
Sbjct: 382 -------------GETVKIGYFDQH--------RDELDP-DKTVLEELSEGFPDGDEQEV 419
Query: 458 --IMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT----- 509
+ G + S G++ + LA+ +++ +L+LDE T ++D ++
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479
Query: 510 DLLIQRTIRKKFADCTVLTIAH 531
+ L+ + TVL ++H
Sbjct: 480 EALLDF-------EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 7e-10
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 307 ISVKRLVEYTK-LEPEGNL------SPNYE--DENEIWPVLGKIEFQNTNVRYLSGPRV- 356
I + + EY K LE +L P E D+ + + KI+F+N Y + V
Sbjct: 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVE 399
Query: 357 -IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI-DTEDVPLSKLR 413
K+LN T+ + VG +G GKS+++ I RL + EG I I+D + +D+ L R
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
S I ++ QDP+LFS +++ N+ KY Y L
Sbjct: 460 SKIGVVSQDPLLFSNSIKNNI----KYSLYSL 487
|
Length = 1466 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+ ++ +V Y +K +++ I K ++G +G GKS+ + + R+ A +
Sbjct: 45 KLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTAL 449
+G +++D DI + V L +LR + ++ Q P F ++R+N+ P K+ D + T L
Sbjct: 104 DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGD--INTGL 160
Query: 450 -----------QEVELKDMIMEGAGL----NMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
E EL + + A L N + + S GQ+Q +C+AR + +
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220
Query: 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
++++DE + +DP I+ I + + TV+ + H +
Sbjct: 221 VILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNM 259
|
Length = 305 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 7e-10
Identities = 53/260 (20%), Positives = 118/260 (45%), Gaps = 43/260 (16%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEGVIKIDDID 403
+ G + ++++ I K+ I +G +G GKS+L+ R+ A+VEG + D +
Sbjct: 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN 88
Query: 404 TEDVPLS--KLRSNISIIPQDPVLFSGTLRKNL------DPFEKYPDYVLWTALQEVELK 455
D ++ KLR + ++ Q P F ++ +N+ + ++ D ++ +L+ +
Sbjct: 89 IYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIW 148
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ + + + E GT S GQ+Q +C+ARAI +L++DE + +DP + ++
Sbjct: 149 EEVKD------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKD----------LIE 565
+ T++ + H + + V+ + FF+ + L+E
Sbjct: 203 LCLELKEQYTIIMVTHNMQQ-------------ASRVADWTAFFNTEIDEYGKRRGKLVE 249
Query: 566 GTVSAKVLSSRKRREKEDRI 585
+ + ++ S + +E + I
Sbjct: 250 FSPTEQMFGSPQTKEAREYI 269
|
Length = 274 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 8e-10
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 340 KIEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE 394
I F N + Y G + I ++N + IVG+TG+GKS+LI I L +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 395 GVIKIDDID----TEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLD--------PFEKY 440
G + +DDI T+D + +R I ++ Q P LF T+ + + ++
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV 121
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
+Y L ++ +M + M S GQ + I + + N I+VLDE
Sbjct: 122 KNYA-HRLLMDLGFSRDVMSQSPFQM---------SGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 501 ATANVDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
TA +DP++ + R ++ D T++ ++H ++ + +D+V+VM G V
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEG 395
G I + V Y V+ +L++ I E + ++G++G GK++L IA + A + G
Sbjct: 4 GGIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 396 VIKIDDIDTEDVP-----LSKLRSNISIIPQ----DPVLFSGTLRK--NLDPFEKYPDYV 444
I I D D P L+ L N ++ P D V F +K D E+ D
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD-- 120
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
AL+ V L D A ++ S G +Q I +ARAI +L+LDE +
Sbjct: 121 ---ALKLVGLGD-----AAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 505 VDPKTDLLIQRTIR---KKFADCTVLTIAH-RLHTIMDSDKVLVMDSG 548
+D ++ I ++ + T+L + H + + +DK +M G
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 58/240 (24%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 346 TNVRYLSGPRVI-KNLNITIHPKEKIGIV-GRTGAGKSSLIAAIFRLAEV-EGVIKIDDI 402
T+ + P+V+ +++++++ P+ K+ +V G TG+GKS+L+ ++ E+ EG + +
Sbjct: 664 TDDFFELEPKVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-- 720
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK-DMIMEG 461
RS I+ +PQ + + T+R N+ F++ L A++ +L+ D+ G
Sbjct: 721 ----------RS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLG 769
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKK 520
GL + E G N S GQ+ + LARA+ N + +LD+ + +D + +++
Sbjct: 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829
Query: 521 FADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRRE 580
A T + H++H + +D V+ + G S F + + T++A++ ++ +E
Sbjct: 830 LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKE 889
|
Length = 1560 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 25/220 (11%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGV 396
+E +N Y + +N+TI E + ++G G+GKS+ L+ +++ G
Sbjct: 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGE 379
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV-LWTALQEVELK 455
I +D R S + D LF L + P V W ++ K
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP--EGKPANPALVEKWLERLKMAHK 437
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK------T 509
+ +G N S GQ++ + L A+ IL+LDE A+ DP
Sbjct: 438 LELEDGRISN-------LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
LL K T+ I+H H + +D++L M +G
Sbjct: 491 VLLPLLQEMGK----TIFAISHDDHYFIHADRLLEMRNGQ 526
|
Length = 547 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 346 TNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID 403
+ + G R + +++ T+ P + ++G GAGKS+L + + RL EG I + D
Sbjct: 5 AGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 404 TEDVPLSKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLWTALQ-----EVELK-D 456
P + L + ++ Q P L ++R+NL AL E +
Sbjct: 65 LRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYH---------AALHGLSRAEARARIA 114
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
++ GL + + G R+ + +ARA++ +L+LDE T +DP + I
Sbjct: 115 ELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 517 IRKKFAD--CTVLTIAHRLHTIMDSDKVLVMDSG 548
+R D +VL H + I D+++V+ G
Sbjct: 175 VRALARDQGLSVLWATHLVDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 23/227 (10%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+ F + R+ G V+ LN ++ EK+ ++G +G+GKS+++ + L + EG I+
Sbjct: 1 VRFSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 399 IDD-------------IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
++ + ++ L ++R+ I ++ Q LF + LD + P VL
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPH--KTVLDNVTEAPVLVL 116
Query: 446 WTALQEVELKDM-IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
A E E + M +++ GL S GQ+Q + +ARA+ +++ DE T+
Sbjct: 117 GMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176
Query: 505 VDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+DP+ + IR+ + D T+L + H + + +D+V D G
Sbjct: 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 346 TNVRYLSGPRVIKN-LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID 403
V G +V+ N L+ TI E G++G GAGKS++ + + G I +
Sbjct: 8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG-- 65
Query: 404 TEDVP--LSKLRSNISIIPQ-DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI-- 458
E VP R I ++PQ D + T+R+NL F +Y + E++ +I
Sbjct: 66 -EPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY------FGMSTREIEAVIPS 118
Query: 459 -MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
+E A L S G ++ + LARA++ + +L+LDE T +DP LI +
Sbjct: 119 LLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178
Query: 518 RKKFA-DCTVLTIAHRLHTIMDS-----DKVLVMDSGVAVV 552
R A T+L H M+ D++ V++SG +
Sbjct: 179 RSLLARGKTILLTTH----FMEEAERLCDRLCVLESGRKIA 215
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I+F+N RY G + V+ L+ + E G++G GAGK++ + + L + G I
Sbjct: 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 399 IDDIDTEDVP--LSKLRSNISIIPQ----DPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+ E VP R + ++PQ DP T+R+NL F +Y + L +A
Sbjct: 66 LCG---EPVPSRARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRY--FGL-SAAAAR 116
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
L ++E A L S G ++ + LARA+V + +LVLDE T +DP+ L
Sbjct: 117 ALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176
Query: 513 IQRTIRKKFADC-TVLTIAH 531
+ +R A T+L H
Sbjct: 177 MWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 48/214 (22%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSK--L 412
R++ ++++ + + + I+G +G+GK++L+ AI E G I P
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE-GGGTTSGQILFNGQPRKPDQF 79
Query: 413 RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV---ELKDMIMEGAGLNMTV 468
+ ++ + QD +L G T+R+ L Y L ++ +E L
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETL-------TYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 469 YE--GGTNF---SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA- 522
GG S G+R+ + +A ++ + +L+LDE T+ +D T L + T+ + A
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS-QLAR 191
Query: 523 -DCTVLTIAHRLHTIMDS--DKVLVMDSGVAVVS 553
+ V+ H+ + + D++L++ SG V S
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
I +N + Y V+ ++++ I I+G GAGKS+L++ + RL + + G I I
Sbjct: 2 ITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP---------DYVLWT-AL 449
D ++ P +L +SI+ Q+ + S ++L F ++P D + A+
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
+ + L+D+ S GQRQ +A + ++ ++LDE N+D K
Sbjct: 121 EYLHLEDL----------SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTI----MDSDKVLVMDSGVAV 551
+ I + +R + AD TI LH I SD ++ + +G V
Sbjct: 171 SVQIMKILR-RLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 64/294 (21%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI--------------AA 386
IE +N ++ G V+KN++ TI E +GI+GR+GAGKS L+
Sbjct: 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59
Query: 387 IFRLAEVEGV----------------------IKIDDIDTEDVPLSKLRSNISIIPQDPV 424
I+ +A E ++D + D ++R I+I+ Q
Sbjct: 60 IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF 119
Query: 425 LFSGTLRKNLDPFEKYPD--YVLWTALQE-VELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481
G + E + Y A+ V+L +M+ L+ + + S G++Q
Sbjct: 120 ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ----LSHRITHIARDLSGGEKQ 175
Query: 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD- 538
+ LAR + + + + DE T +DP+T L+ + + K + +++ +H I D
Sbjct: 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235
Query: 539 SDKVLVMDSGVAVVSSFGFFFSKDLIEGT---VSAKVLSSRK--RREKEDRIGE 587
SDK + +++G EGT V A + +E E +GE
Sbjct: 236 SDKAIWLENGEIKE------------EGTPDEVVAVFMEGVSEVEKECEVEVGE 277
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 38/229 (16%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIK 398
+E +N R+ G + +++ ++ E G++G GAGK++ I I + G +
Sbjct: 1 LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 399 IDD--IDTEDVPLSKLRSNISIIP-----------QDPVLFSGTLRKNLDPFEKYPDYVL 445
D +D R+ I +P D +++ L K L E
Sbjct: 59 FDGKPLDIAA------RNRIGYLPEERGLYPKMKVIDQLVYLAQL-KGLKKEEARRRIDE 111
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
W L+ +EL + N V E S G +Q + A++ + +L+LDE + +
Sbjct: 112 W--LERLELSEY------ANKRVEE----LSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552
DP L++ IR+ A TV+ H++ + + D+VL+++ G AV+
Sbjct: 160 DPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 107/542 (19%), Positives = 200/542 (36%), Gaps = 68/542 (12%)
Query: 46 IVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
+NN I++ + S S+ G+ L+ LF G A+ M + + E
Sbjct: 40 SINNAIHEENFLGQGSLFSFGGL--CLLALLFRIGADIFPAYAG--MHIIANLRIALCEK 95
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAV-DEVLPKAMLDAAQGVMQVSGALIVSLSVNPL 164
++ +P+ + ++ + D+ + + + A + A + LSV P+
Sbjct: 96 ILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSV-PM 154
Query: 165 FSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLN----ACLHGLPTIRAHGA 220
F+I + ++ + L K+ N A G ++ HG
Sbjct: 155 FAITISAIII---GTAAQLLAFMGGFKFFHAA--RDEEDAFNEHTHAIAFGAKELKIHGI 209
Query: 221 AKI------LVEEFDYHQDLHSSTWHLFV----YTNMGFAYLIDFLCLLYLSTILISFFF 270
++ + E + DLH +F+ + + F LI C L+ +
Sbjct: 210 RRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIG--CALFAAA------M 261
Query: 271 FADIGGK-VGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEY----TKLEPEGNLS 325
FA I + V + + G ++ + + I+ +RL ++ + EPE LS
Sbjct: 262 FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELS 321
Query: 326 ----PNYEDENEIWPVLGKIEFQNTNVRYL----SGPRVIKNLNITIHPKEKIGIVGRTG 377
++ IE ++ ++ S + +++ I + + IVG G
Sbjct: 322 DADNVLLLAHDKSV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENG 378
Query: 378 AGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDP 436
GKS+L L EG I +D R S I D LF + D
Sbjct: 379 CGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DE 436
Query: 437 FEKYPDYVLWTALQEVELKDMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
E LQ +E+ D + +E G + T T S GQ++ + L A + + I
Sbjct: 437 GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPI 491
Query: 496 LVLDEATANVDPK------TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
L+ DE A+ DP +LL + K T++ I+H +D+++ + +G
Sbjct: 492 LLFDEWAADQDPAFKRFFYEELLPDLKRQGK----TIIIISHDDQYFELADQIIKLAAGC 547
Query: 550 AV 551
V
Sbjct: 548 IV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 20/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV---EGVI 397
IE +N +Y ++ ++ + E G++G GAGK++ I + L + +
Sbjct: 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEK---YPDYVLWTALQEVE 453
D+ E ++R I I+ QD + T +NL + P + E+
Sbjct: 60 AGHDVVREP---REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDEL- 115
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
++ GL +S G R+ + +AR++V +L LDE T +DP+T +
Sbjct: 116 -----LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
Query: 514 QRTIRK--KFADCTVLTIAHRLHTI-MDSDKVLVMDSGVAV 551
I K + T+L H + D+V ++D G +
Sbjct: 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 40/222 (18%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI---DDIDTEDVPLS 410
+ + + + ++ E +G+VG +G GKS+ AI L + +G + D + +D
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWR 94
Query: 411 KLRSNISIIPQDPVLFSGTLRKNL-----DPFEKY-PDYVLWTALQEV--ELKDMIMEGA 462
+RS+I +I QDP L S R + +P Y P + QEV +K M+++
Sbjct: 95 AVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPK----LSRQEVKDRVKAMMLK-V 148
Query: 463 GL-----NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-----TDLL 512
GL N +E FS GQ Q I +ARA++ +++ DE + +D +LL
Sbjct: 149 GLLPNLINRYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204
Query: 513 --IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+QR + +++ IAH L + SD+VLVM G AV
Sbjct: 205 QQLQREM-----GLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241
|
Length = 331 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 5e-09
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 27/251 (10%)
Query: 307 ISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLG-KIEFQNTNVRYLSG-PRVIKNLNITI 364
+S+KRL + E L P+ + I P G I N + P + + +I
Sbjct: 605 VSLKRLRIFLSHE---ELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSI 661
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
+ +VG+ G GKSSL++A+ + +VEG + + + +++ +PQ
Sbjct: 662 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM-------------KGSVAYVPQQA 708
Query: 424 VLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480
+ + +LR+N+ Y L D+ + +G + E G N S GQ+
Sbjct: 709 WIQNDSLRENILFGKALN--EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK 766
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKK--FADCTVLTIAHRLHTIM 537
Q + LARA+ N I + D+ + VD I + I + + T + + H + +
Sbjct: 767 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP 826
Query: 538 DSDKVLVMDSG 548
D ++VM G
Sbjct: 827 QVDVIIVMSGG 837
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 53/218 (24%), Positives = 111/218 (50%), Gaps = 17/218 (7%)
Query: 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV 407
+ +K++N+T++P E ++G GAGKS+L+ + + E +G I I++I+ +
Sbjct: 13 KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL 72
Query: 408 -PLSKLRSNISIIPQD-PVLFSGTLRKNL----DPFEKY--PDYVLWTALQEVELKDMIM 459
+ I II Q+ V+ T+ +NL +K + + W ++ M++
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR--AAMML 130
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV-DPKTDLL--IQRT 516
GL + + E N S+ +Q++ +A+ ++ + ++++DE T+++ + + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 517 IRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+RK+ ++ I+H+L I D+ VM G +V S
Sbjct: 191 LRKEGT--AIVYISHKLAEIRRICDRYTVMKDGSSVCS 226
|
Length = 510 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-09
Identities = 52/217 (23%), Positives = 108/217 (49%), Gaps = 32/217 (14%)
Query: 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
+ K +N ++ Y + +K++N+ I ++ ++G +G GKS+L+ + R+ + +EGV
Sbjct: 1 MNKFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV 59
Query: 397 IKID---DIDTED----VPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYP 441
KI +D ED + ++ LR + ++ Q P F ++ +N+ +K
Sbjct: 60 -KITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVL 118
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
D V+ +L+ L D + + L S GQ+Q +C+AR I ++++DE
Sbjct: 119 DEVVERSLRGAALWDEVKDR--LKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEP 172
Query: 502 TANVDP----KTDLLIQRTIRKKFADCTVLTIAHRLH 534
T+ +DP K + L++ ++K + T++ + H +
Sbjct: 173 TSALDPIATHKIEELME-ELKKNY---TIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 50/273 (18%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
+I+ ++ N+ Y S ++++N+ I P+ +G +G GKS+++ + R+ E V
Sbjct: 4 RIDVKDLNIYYGSF-HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQ 450
EG + +D D+ V +R I ++ Q P F + ++R N+ V L
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV---------VAGLKLN 113
Query: 451 EV----ELKDMI---MEGAGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLD 499
V +L +++ + GA L V + G S GQ+Q +C+ARAI +L++D
Sbjct: 114 GVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFF 559
E + +DP + L I+ I + D T++ + H + A VS FF
Sbjct: 174 EPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ-------------AARVSDQTAFF 220
Query: 560 SKD-------LIEGTVSAKVLSSRKRREKEDRI 585
+ + L+E + K+ S+ ++ ED I
Sbjct: 221 NLEATGKPGRLVEIDDTEKIFSNPTQKATEDYI 253
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 26/166 (15%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDD--IDT-EDVPLSKL 412
++ ++ + P E + +VG +G+GKS+ A+ RL E G I + IDT L L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 413 RSNISIIPQDP---------VLFS--GTLR-KNLDPFEKYPDYVLWTALQEVELKDMIME 460
R +I I QDP V S LR L P + V W L+ V L E
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWL-LERVGLLP---E 455
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
A + FS GQRQ IC+ARA+ N +++ DEA + +D
Sbjct: 456 HA------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 9e-09
Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 23/209 (11%)
Query: 342 EFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------E 394
E +N N Y++ + V+ +LN+ I + +G +G GKS+ + + +L ++ E
Sbjct: 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 395 GVIKIDDIDTEDVPLS--KLRSNISIIPQDPVLFSGTL--------RKNLDPFEKYPDYV 444
G I +T +S +LR+ I ++ Q P F ++ R N K + +
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ +L+ L D + + + + G S GQ+Q +C+ARAI +L++DE T+
Sbjct: 202 VEKSLKSAALWDEVKD------DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
+DP I+ I + +++ + H +
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKID------DI 402
Y++ ++K++ I I GI+G +G+GKS+L+ + RL E+ + IK+D
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELKDMIMEG 461
D + KLR + ++ Q P F +L ++ + ++E E+K ++ E
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFP-----HLSIYDNIAYPLKSHGIKEKREIKKIVEEC 133
Query: 462 ---AGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
GL VY+ + S GQ+Q + +ARA+ +L++DE T+ +D I+
Sbjct: 134 LRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLS 574
+ I + + ++ ++H + V F ++ +L+E S ++ +
Sbjct: 194 KLITELKNEIAIVIVSHNPQQV------------ARVADYVAFLYNGELVEWGSSNEIFT 241
Query: 575 SRKRREKEDRI 585
S K E +
Sbjct: 242 SPKNELTEKYV 252
|
Length = 257 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 347 NVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDT 404
NV YL+G I N++ ++ E I G +G GKS+L+ + L G + + D
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
+ R +S Q P LF T+ NL +P + D + L
Sbjct: 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNL----IFPWQIRNQQPDPAIFLDDLER-FAL 126
Query: 465 NMTVYEGGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDL--LIQRTIRK 519
T+ S G++Q I L R + +L+LDE T+ +D K ++ +I R +R+
Sbjct: 127 PDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVM 545
+ + VL + H I +DKV+ +
Sbjct: 187 Q--NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAI--FRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417
++T E IVG +G+GKS+L+ I F + G + I+ +D P + +S
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPA--DRPVS 73
Query: 418 IIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476
++ Q+ LF+ T+ +N+ P L TA + ++ + GL S
Sbjct: 74 MLFQENNLFAHLTVEQNVG-LGLSPGLKL-TAEDR-QAIEVALARVGLAGLEKRLPGELS 130
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPK-----TDLLIQRTIRKKFADCTVLTIAH 531
G+RQ + LAR +VR+ +L+LDE A +DP DL++ K TVL + H
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM---TVLMVTH 187
Query: 532 RLHTIMD-SDKVLVMDSG 548
+ + +V+ +D+G
Sbjct: 188 QPEDAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
I+ + Y V+ L+ T+ E G++G GAGKS++ I + G I +
Sbjct: 42 IDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 400 DDIDTEDVP--LSKLRSNISIIPQ-DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE-LK 455
VP R+ I ++PQ D + T+R+NL F +Y + +E+E +
Sbjct: 101 LG---VPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY----FGMSTREIEAVI 153
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
++E A L ++ S G ++ + LARA++ + +L+LDE T +DP LI
Sbjct: 154 PSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
Query: 516 TIRKKFADC-TVLTIAHRLHTIMDS-----DKVLVMDSGVAVV 552
+R A T+L H M+ D++ V+++G +
Sbjct: 214 RLRSLLARGKTILLTTH----FMEEAERLCDRLCVLEAGRKIA 252
|
Length = 340 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 53/228 (23%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDVPLSKL 412
V+ N+++++ E + ++GR+G GKS+L RL + G+ ++ PL+KL
Sbjct: 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLA----RL--LVGLESPSQGNVSWRGEPLAKL 79
Query: 413 --------RSNISIIPQDPV-----------LFSGTLRK--NLDPFEKYPDYVLWTALQE 451
R +I ++ QD + + LR +LD E+ L+
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAER--LARASEMLRA 137
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
V+L D +++ + S GQ Q +CLARA+ +L+LDEA +N+ DL
Sbjct: 138 VDLDDSVLDKRPPQL---------SGGQLQRVCLARALAVEPKLLILDEAVSNL----DL 184
Query: 512 LIQRTI-------RKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
++Q + +++F L I H L + +V+VMD+G V
Sbjct: 185 VLQAGVIRLLKKLQQQF-GTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 44/251 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIFRLAEV------ 393
I QN + Y + V KN+ I P+ K+ ++G +G GKS+++ ++ R+ ++
Sbjct: 14 ISLQNVTISYGTFEAV-KNVFCDI-PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 394 EGVIKIDDID--TEDVPLSKLRSNISIIPQDPVLFSGTLRKNL------DPFEKYPDYVL 445
+G + D D V ++R I ++ Q P F ++ +N+ + + D ++
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELV 131
Query: 446 WTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+L++ E KD LN E G + S GQ+Q +C+AR I ++++DE
Sbjct: 132 ERSLRKAAVWDECKDK------LN----ESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSK 561
+ +DP + L I+ T+ + + T++ + H M V VS FF+
Sbjct: 182 CSALDPISTLKIEETMHELKKNFTIVIVTHN------------MQQAVR-VSDMTAFFNA 228
Query: 562 DLIEGTVSAKV 572
+ +EG KV
Sbjct: 229 EEVEGGSGGKV 239
|
Length = 269 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 341 IEFQNTNVRYLSGPRVIK----NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I+F+N + Y G + K N++ + + +VG TG+GKS+L+ L + G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 396 VIKIDD----IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPD 442
I I +T + L KLR +S++ Q P LF T+ K N E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 443 YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
L++V L + ++ + + S GQ + + +A + IL LDE
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFEL---------SGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 503 ANVDPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
A +DP+ ++Q + A TV+ + H + + + +D VLV++ G
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 29/184 (15%)
Query: 346 TNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDD 401
++ + G RV+ L+ T+ E + + G G+GK++L IA + A G IK+D
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA--AGTIKLDG 63
Query: 402 IDTEDVPLSKLRSNISII-PQD---PVLFSGTLRKNLDPFEKY---PDYVLWTALQEVEL 454
D+ + + ++ P L T+ +NL+ + + + + AL+ V L
Sbjct: 64 ---GDIDDPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGL 117
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ G S GQ++ + LAR +V N I +LDE TA +D L
Sbjct: 118 APLAHLPFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
Query: 515 RTIR 518
IR
Sbjct: 168 ELIR 171
|
Length = 207 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSK 411
G + + + ++ I E I+G +G+GKS+ + + RL E G I ID + +
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 412 L----RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
L R I ++ Q LF L P+ + W + E +++ GL
Sbjct: 65 LREVRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY 122
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLL-----IQRTIRKK 520
+ S G +Q + LARA+ IL++DEA + +DP + + +Q T++K
Sbjct: 123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK- 181
Query: 521 FADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T++ I H L + D++++M +G V
Sbjct: 182 ----TIVFITHDLDEAIRIGDRIVIMKAGEIV 209
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 3e-08
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI------- 402
+G V+ +++ + ++G TG+GK++ + + R+ + V G D+
Sbjct: 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90
Query: 403 -DTEDVPLSKLRSNISIIPQDPVLFSGTLRKN---------LDPFEKYPDYVLWTALQEV 452
+ DV + R + ++ Q P F ++ N L P +++ V L EV
Sbjct: 91 FNYRDV--LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG-VAQARLTEV 147
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
L D + + + + S GQ+QL+CLAR + N +L+LDE T+ +DP T
Sbjct: 148 GLWDAVKD------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKV 572
I+ IR TV+ + H L + FF L+E + ++
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLA------------QAARISDRAALFFDGRLVEEGPTEQL 249
Query: 573 LSSRKRRE 580
SS K E
Sbjct: 250 FSSPKHAE 257
|
Length = 276 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKIDDIDTEDVPL 409
V+ +++++ +G+VG GAGK++L+ AI L G + + D E +
Sbjct: 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA 72
Query: 410 SKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPD---YVLWTALQEVELKDMIMEGAGLN 465
++ +PQD L F +R+ ++ + P + WT + + ME G+
Sbjct: 73 RAASRRVASVPQDTSLSFEFDVRQVVE-MGRTPHRSRFDTWTETDRAAV-ERAMERTGVA 130
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
T+ S G+RQ + LARA+ + +L+LDE TA++D I +R
Sbjct: 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD------INHQVR 177
|
Length = 402 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 26/210 (12%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAEVEGVIKIDDIDTEDVPLSK 411
+ + +N + E G +G GAGK++ I + R + D+ E K
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP---RK 63
Query: 412 LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTA-------LQEVELKDMIMEGAG 463
+R +I I+PQ + T R+NL+ + A L+ EL + G
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG 123
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KFA 522
+S G R+ + +A +++ +L LDE T +DP+T I IR K
Sbjct: 124 ----------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173
Query: 523 DCTVLTIAHRLHTI-MDSDKVLVMDSGVAV 551
T+L H + D++ ++D G +
Sbjct: 174 GVTILLTTHYMEEADKLCDRIAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 41/220 (18%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI----KIDDIDTEDVP---L 409
+ +LN ++ E +GIVG +G+GKS A+ L G I + + ++P L
Sbjct: 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 410 SKLRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDY---VLW--------TALQE-VELKD 456
+KLR+ IS+I QDP+ +L+P+ + + VL A +E V + D
Sbjct: 92 NKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD 144
Query: 457 MI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ M A M +Y FS G RQ + +A A++ +L+ DE T + D+ +Q
Sbjct: 145 AVKMPEARKRMKMYP--HEFSGGMRQRVMIAMALLCRPKLLIADEPTTAL----DVTVQA 198
Query: 516 TIR------KKFADCTVLTIAHRLHTIMDS-DKVLVMDSG 548
I K+ + ++ I H L + DKVLVM +G
Sbjct: 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238
|
Length = 330 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLR 413
R++ +L++++ + ++G G GKS+L+ R L G + + D + +L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL--QEVELKDMIMEGAGLNMTVYEG 471
++++PQ + G + L + + P LW L ++ + ME +N
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR 135
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTIA 530
T+ S GQRQ LA + ++ +++LDE T +D + + R +R+ TV+T+
Sbjct: 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL 195
Query: 531 HRL 533
H L
Sbjct: 196 HDL 198
|
Length = 255 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 29/237 (12%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDI---------DTE 405
+ N++ T + I+G +G+GKS+L+ L + + G I++ DI +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 406 DVPLSK-------LRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELK 455
P SK LR +S++ Q P LF T+ K++ + L E +L
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI----MFGPVALGVKKSEAKKLA 156
Query: 456 DMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ GL+ + E S GQ++ + +A + IL+ DE TA +DPK + +
Sbjct: 157 KFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM 216
Query: 515 RTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSS--FGFFFSKDLIEGT 567
+ I K + TV I H + +++ +D+V+VMD G + + + F + +I T
Sbjct: 217 QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINST 273
|
Length = 320 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-08
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 31/171 (18%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA-AIFRLA---EVEGVIKIDDIDTED 406
L G ++ N+N TI E + ++G +G GKS+L++ I LA G + +++ +
Sbjct: 12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM 71
Query: 407 VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL-----------QEVELK 455
+P + + I I+ QD +LF P + L
Sbjct: 72 LPAA--QRQIGILFQDALLF--------------PHLSVGQNLLFALPATLKGNARRNAA 115
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+ +E +GL+ ++ S GQR + L RA++ L+LDE + +D
Sbjct: 116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 7e-08
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKI--DDIDTEDVP 408
+++ ++ I E G +G +G GKS+++ ++ R+ ++ EG + D+ + V
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLWTALQEVELKDMIMEGA 462
+R I ++ Q P FS ++ N L+ ++ + ALQ L D + +
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-- 141
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522
+ G + S GQ+Q +C+ARAI +L+LDE + +DP ++ + +
Sbjct: 142 ----KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 523 DCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGT 567
D T+ + H + + VA ++ FFS D+ +GT
Sbjct: 198 DYTIALVTHNMQQAIR----------VADTTA---FFSVDISQGT 229
|
Length = 261 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 24/180 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
+E ++ Y G +K +N E + ++G GAGKS+L I + E +I
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVE-- 453
K + I + L ++R + I+ Q+P LF+ T+ +++ + L + +EVE
Sbjct: 62 KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDV----AFGPLNLGLSKEEVEKR 117
Query: 454 ----LKDMIMEGAGLNMTVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
LK + MEG +E + S GQ++ + +A + I+VLDE T+ +DP
Sbjct: 118 VKEALKAVGMEG-------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170
|
Length = 275 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 31/235 (13%)
Query: 311 RLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKI 370
R+ E G S + I+F+N + +G +I++L+ + +
Sbjct: 422 RVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNL 481
Query: 371 GIVGRTGAGKSSLIAAIFR-LAEV----EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL 425
I G G GKSSL FR L E+ G + + + +PQ P +
Sbjct: 482 LICGPNGCGKSSL----FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYM 526
Query: 426 FSGTLRKNL-------DPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477
GTLR + D + D L L V+L ++ G + V + S
Sbjct: 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS-AVQDWMDVLSG 585
Query: 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532
G++Q I +AR +LDE T+ V + + R R+ T+ +++HR
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTE- 405
V+ G V+ +++ + P E + I+G +G+GK++L+ I L + E G I++ DI +
Sbjct: 10 VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69
Query: 406 DVPLSK-------LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE-VELKDM 457
LS+ LR ++ + Q+ LF R L+ + P V +E
Sbjct: 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPH--RTVLENIIEGPVIVKGEPKEEATARARE 127
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILVLDEATANVDPKTDLLIQRT 516
++ GL S GQ+Q + +ARA+ +R VIL DE T+ +DP+ + T
Sbjct: 128 LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVIL-FDEPTSALDPELVGEVLNT 186
Query: 517 IRKKFADC-TVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
IR+ + T++ + H + D +D+ + MD G V
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
|
Length = 250 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417
+L+ T++ E + I G GAGK++L+ + L G + ++V +
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78
Query: 418 IIPQDPVLFSG-TLRKNL----DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG 472
+ P + + T +NL +W AL +V L + G
Sbjct: 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVG--------- 129
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
S GQ++ + LAR + + +LDE +D +
Sbjct: 130 -QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE 164
|
Length = 209 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 47/224 (20%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDI------ 402
G + + N+++ + E + + G GAGKS+L ++ ++ EG I +
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN 75
Query: 403 --DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-----------KYPDYVLWTAL 449
DTE R+ I+II Q+ L K L E DY
Sbjct: 76 IRDTE-------RAGIAIIHQEL-----ALVKELSVLENIFLGNEITPGGIMDY------ 117
Query: 450 QEVELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV-DP 507
+ L+ ++ L++ N +GQ+QL+ +A+A+ + +L+LDE TA++ +
Sbjct: 118 DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177
Query: 508 KTDLL--IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+T +L I R ++ C + I+H+L+ + SD + V+ G
Sbjct: 178 ETAVLLDIIRDLKAHGIAC--IYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 42/242 (17%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------A 391
+ +N +V + +K ++ I E + +VG +G+GKS +I L A
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 392 EVEGVIKIDDIDTEDVP---LSKLRSN-ISIIPQDPVLFSGTLRKNLDPFEK-----YPD 442
G I D D L +R N I +I Q+P+ +L+P
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPLHTIGKQLAEV 119
Query: 443 YVLWTALQEVELKDMIME----------GAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492
L L + +E L+ +E S GQRQ + +A A+
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANE 175
Query: 493 NVILVLDEATANVDPKTDLLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549
+L+ DE T +D I ++ + +L I H L + +D+V VM G
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235
Query: 550 AV 551
V
Sbjct: 236 IV 237
|
Length = 534 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLR-- 413
+K+ ++ I E I+G +G+GKS+++ + RL E G + ID +D + ++LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 414 ---------SNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKDMIMEGA 462
+ +++P VL + L E+ + L AL++V
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKAL-DALRQV---------- 152
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522
GL + S G RQ + LARA+ N IL++DEA + +DP +Q + K A
Sbjct: 153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 523 DC--TVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T++ I+H L M D++ +M +G V
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
Length = 400 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 37/230 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
+E +N +VR L G ++ ++++T+ P E + I+G GAGKS+L+ A+ L+ G +++
Sbjct: 3 LEARNLSVR-LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVL-FSGTLRKNLDPFE--------KYPDYVLWTALQ 450
+ D ++L +++PQ L F PF + P +
Sbjct: 62 NGRPLADWSPAELARRRAVLPQHSSLSF---------PFTVEEVVAMGRAPHGLSRAEDD 112
Query: 451 EVELKDMIMEGAGLNMTVYEGG--TNFSVGQRQLICLARAIVR------NNVILVLDEAT 502
L + L G S G++Q + LAR + + L+LDE T
Sbjct: 113 --ALVAAALAQVDL--AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 503 ANVDPKTDLLIQRTIRKKFAD---CTVLTIAHRLH-TIMDSDKVLVMDSG 548
+ +D + R R + A V+ + H L+ +D+++++ G
Sbjct: 169 SALDLAHQHHVLRLAR-QLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIP 420
++ E +G++G GAGK++L+ AI L +G +K+ K +I +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 421 QD-------PVLFSGTL---RKNLDPFEKYPDYVLWTA----LQEVELKDMIMEGAGLNM 466
Q P+ + T+ R + + P + A L+ V L ++ +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL------ADR 109
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKFADCT 525
V E S GQRQ + +ARA+ +L+LDE +D P +LL + I A
Sbjct: 110 PVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 526 VLTIAHRLHTIMDS-DKVLVMDSGV 549
+L H L M + D+V++++ V
Sbjct: 166 ILMTTHDLAQAMATCDRVVLLNGRV 190
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 13/205 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
IE +N N+ Y + + + N+NI I ++G +G GKS+ + + R+ ++ IKI+
Sbjct: 8 IETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIE 66
Query: 401 --------DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+I + + + +LR I ++ Q P F ++ N+ K L E+
Sbjct: 67 GNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEI 126
Query: 453 ELKDMIMEGAGLNMTVYEGGTN---FSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
+ + + A N + TN S GQ+Q +C+AR + ++++DE T+ +DP +
Sbjct: 127 VEQSLK-KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLH 534
I+ I T++ + H +
Sbjct: 186 TGKIEELIINLKESYTIIIVTHNMQ 210
|
Length = 254 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRS 414
+ ++ +G +G GAGKS+ + I L G +++ D P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 415 NISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG 463
NI +P+ L F + K Q VE +MI E G
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK----------QRVE--EMI-ELVG 122
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
L ++ S G RQ + LA+A++ + +L+LDE T +DP + I+ I+ D
Sbjct: 123 LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 524 CTVLTIAHRLHTIMDS-----DKVLVMDSGVAVVS 553
T++ H IM D+V++++ G V
Sbjct: 183 KTIILSTH----IMQEVEAICDRVIIINKGKIVAD 213
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDD---IDTE-DVPLSKLRSNISIIP 420
+E GI G +GAGKS+L+ I L + + G I ++ D+ + L + I ++
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 421 QDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK--DMIMEGAGLNMTVYEGGTNFSV 477
Q LF +R+NL + L + D +++ GL+ + S
Sbjct: 82 QQYALFPHLNVRENLA-------FGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSG 134
Query: 478 GQRQLICLARAIVRNNVILVLDEATANVDP--KTDLLIQRTIRKKFADCTVLTIAHRLHT 535
G++Q + LARA+ +L+LDE + +D + LL + KK + V+ + H L
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194
Query: 536 I-MDSDKVLVMDSG 548
+D+++VM+ G
Sbjct: 195 AEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 50/237 (21%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
++ +N RY G RV+K ++++I E + IVG +G+GKS+L+ + L G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG- 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR-KNLDPFEKY----PDYVLWTALQE 451
++ LSKL SN LR K L ++ PD+ TAL+
Sbjct: 61 ----EVLFNGQSLSKLSSNE----------RAKLRNKKLGFIYQFHHLLPDF---TALEN 103
Query: 452 V---------------ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496
V E ++E GL + + S G+RQ + +ARA+V ++
Sbjct: 104 VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLV 163
Query: 497 VLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ DE T N+D DL+++ + L + H L D+VL M G
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTS---FLVVTHDLELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 55/251 (21%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
+ +N N+ Y + ++ I+I ++G +G GKS+L+ R+ +
Sbjct: 7 LSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65
Query: 395 GVIKIDDIDTEDVPLS--KLRSNISIIPQDPVLFSGTL---------------RKNLDPF 437
G I + + D LR I ++ Q P F ++ +K LD
Sbjct: 66 GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI 125
Query: 438 --EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
+ LW E+KD + + A + S GQ+Q +C+AR + N +
Sbjct: 126 VEKSLKGAALWD-----EVKDRLHDSA----------LSLSGGQQQRLCIARTLAVNPEV 170
Query: 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF 555
+++DE + +DP I+ I + TV+ + H + A VS +
Sbjct: 171 ILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNM-------------QQAARVSDY 217
Query: 556 -GFFFSKDLIE 565
GF + LIE
Sbjct: 218 TGFMYLGKLIE 228
|
Length = 253 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 57/251 (22%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI--- 397
IEF+ + + + +++T++ E G+VG +G+GKS + AI + + +
Sbjct: 11 IEFKTSQGWV----KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD 66
Query: 398 --KIDDIDTEDVPLSKLRS----NISIIPQDPVLFSGTLRKNLDPFEKYPDYVL-----W 446
+ DDID + + R N+S+I Q+P + LDP E+ ++ W
Sbjct: 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP-------QSCLDPSERVGRQLIQNIPAW 119
Query: 447 T------------------ALQEVELKDM--IMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
T L V +KD IM +T E Q + +A
Sbjct: 120 TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGEC---------QKVMIA 170
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVL 543
A+ +L+ DE T +++P T I R + + + ++ T+L I+H L I +DK+
Sbjct: 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN 230
Query: 544 VMDSGVAVVSS 554
V+ G V S+
Sbjct: 231 VLYCGQTVESA 241
|
Length = 330 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 25/220 (11%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + Y G + +++ I E ++G +G GK++L+ I G I +
Sbjct: 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK--YPDYVLWTALQEVELKDM 457
D D ++P K N + Q+ LF +L FE + + E++ +
Sbjct: 60 DGKDITNLPPHKRPVNT--VFQNYALFP-----HLTVFENIAFGLRLKKLPKAEIKERVA 112
Query: 458 IMEGAGLNMTVYEGGTN-----FSVGQRQLICLARAIVRNNVILVLDEATANVDPK--TD 510
L++ EG N S GQ+Q + +ARA+V +L+LDE +D K D
Sbjct: 113 EA----LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 511 LLIQ-RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++ + ++K+ T + + H + SD++ VM+ G
Sbjct: 169 MQLELKRLQKELG-ITFVFVTHDQEEALTMSDRIAVMNKG 207
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 41/248 (16%)
Query: 327 NYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIK---NLNITIHPKEKIGIVGRTGAGKSS 382
E I I+ +N + RY+S R V+K N+++ + E GIVG +GAGK++
Sbjct: 272 EVEVGEPI------IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTT 325
Query: 383 L---IAAIFRLAEVEGVIKIDD--ID-TEDVPLSKLRSN--ISIIPQDPVLFS-GTLRKN 433
L IA + E +++ D +D T+ P + R+ I I+ Q+ L+ T+ N
Sbjct: 326 LSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385
Query: 434 LD-------PFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483
L P E L + E + I++ + S G+R +
Sbjct: 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDEL---------SEGERHRV 436
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SD 540
LA+ +++ I++LDE T +DP T + + +I K + + T + ++H + ++D D
Sbjct: 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496
Query: 541 KVLVMDSG 548
+ +M G
Sbjct: 497 RAALMRDG 504
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
IE +N + + G R I N+++ I E G++G +GAGKS+LI I L G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 397 IKIDDID-TE--DVPLSKLRSNISIIPQ 421
+ +D D T + L K R I +I Q
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ 89
|
Length = 343 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTED----VPLSKLRS 414
+ T+ + I GR+G+GK++LI I L EG I ++ D + L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLW--TALQEVELKDMIMEGAGLNMTVYEG 471
I + Q+ LF ++R NL Y + + + ++E G+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNL-------RYGMKRARPSERRISFERVIELLGIGHLLGRL 128
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVD-PKTDLLIQ--RTIRKKFADCTVLT 528
S G++Q + + RA++ + +L++DE A +D P+ ++ + +F +L
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILY 187
Query: 529 IAHRLHTIMD-SDKVLVMDSG 548
++H L ++ +D+V+V++ G
Sbjct: 188 VSHSLQEVLRLADRVVVLEDG 208
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF---RLAEVEGVIKIDDIDTEDVPLS- 410
++K +N+TI E ++G G+GKS+L I + EG I D D+P
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE 470
+ R I + Q P G V+ D + V E
Sbjct: 74 RARLGIFLAFQYPPEIPG-----------------------VKNADFLRY-------VNE 103
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTI 529
G FS G+++ + + ++ + +LDE + +D L+ I K + +VL I
Sbjct: 104 G---FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160
Query: 530 AH--RLHTIMDSDKVLVMDSGVAVVS 553
H RL + D+V V+ G V S
Sbjct: 161 THYQRLLDYIKPDRVHVLYDGRIVKS 186
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 52/261 (19%), Positives = 108/261 (41%), Gaps = 35/261 (13%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSL--IAAIFRLAEVEGVIKIDDIDTEDVPLS 410
++++++TI E + ++G +G GK++L + A F + G I+++ +
Sbjct: 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-VTPSRGSIQLNGR-----RIE 70
Query: 411 KLRSNISIIPQDPVLFSG-TLRKN---------LDPFEKYPDYVLWTALQEVELKDMIME 460
+ ++ Q+ L + N ++ ++ A Q L + +E
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR-----REIAHQM--LALVGLE 123
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
GA +++ S G RQ + +ARA+ +L+LDE +D T +Q +
Sbjct: 124 GAEHKY-IWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178
Query: 521 FADC--TVLTIAHRLH-TIMDSDKVLVMDSGVA-VVSSFGFFFSKDLIEGTVSAKVLSSR 576
+ + VL I H + + + +++V+ G VV F++ G S + S
Sbjct: 179 WQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEPSRAIKSDP 238
Query: 577 K-RREKEDRIGESQSFRERTS 596
+ +E+ + E RE S
Sbjct: 239 EFIAMREEVLDEVFEQREAFS 259
|
Length = 259 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
I N R+ + + ++++ I E + ++G +GAGKS+L+ I L + G I++
Sbjct: 3 IRINNVKKRFGAFGAL-DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 400 DDIDTEDVPLSKLRS---NISIIPQDPVLFS----------GTLRKNLDPFEKYPDYVLW 446
+ DV S L + + Q LF G + P E +
Sbjct: 62 NGRVLFDV--SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNF----SVGQRQLICLARAIVRNNVILVLDEAT 502
L+ V+L+ + + S GQRQ + LARA+ +L+LDE
Sbjct: 120 ELLRLVQLEGL--------------ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165
Query: 503 ANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+D K ++R +RK T + + H ++ +D+V+V++ G
Sbjct: 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID----TEDVPLS 410
++K + + + E + IVG +G+GKS+L+A + L + G +++ ED +
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA-RA 83
Query: 411 KLRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA------- 462
LR+ ++ + Q S L NL E V E GA
Sbjct: 84 ALRARHVGFVFQ-----SFHLIPNLTALEN----VALPLELRGESSADSRAGAKALLEAV 134
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLL 512
GL + S G++Q + LARA +L DE T N+D T DLL
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-----RLAEVEGVIKIDDIDTEDVPLSK 411
+++LN+++ E + +VG +G+GKS AI L + G I +D +
Sbjct: 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG---RPLLPLS 58
Query: 412 LRSN-ISIIPQDPV-----LFS------GTLRKNLDPFEKYPDYVLWTALQEVELKDM-- 457
+R I+ I Q+P LF+ TLR L K ++ AL+ V L D
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS-LGKLSKQARALILEALEAVGLPDPEE 117
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD---PKTDLLIQ 514
+++ + S G Q + +A A++ L+ DE T ++D L +
Sbjct: 118 VLKKYPFQL---------SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168
Query: 515 RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
R +R+ F +L I H L + +D+V VMD G
Sbjct: 169 RELRQLF-GTGILLITHDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IE N + R+ S + + ++N+ + + ++G +G+GKS+L+ I L + + G I++
Sbjct: 1 IEIANISKRFGSF-QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLD---PFEKYPDYVLWTALQEVELK 455
+ D V I + Q LF T+R N+ K+P + ++E+ L+
Sbjct: 60 NGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL-LE 116
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ +EG G S GQRQ + LARA+ +L+LDE +D K ++
Sbjct: 117 LVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171
Query: 516 TIRKKFADCTVLT--IAHRLHTIMD-SDKVLVMDSG 548
+RK + V T + H M+ +D+++VM +G
Sbjct: 172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 356 VIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLR 413
+ N+++T+ PK + G++G GAGKS+L+ I L G I D L K+
Sbjct: 15 AVNNISLTV-PKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG 73
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
S I + P L+ +NL E + L + + D ++ L T +
Sbjct: 74 SLI----ESPPLY-----ENLTARENLKVHTTLLGLPDSRI-DEVLNIVDLTNTGKKKAK 123
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
FS+G +Q + +A A++ + +L+LDE T +DP
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 36/181 (19%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPL 409
+ + L+ T++ E + + G G GK++L +A + R G ++ + L
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNG-----TAL 64
Query: 410 SKLRSNISIIPQDPVLFSG---------TLRKNLD---PFEKYPDYVLWTALQEVELKDM 457
++ R P +L+ G + +NL + AL V L
Sbjct: 65 AEQRD----EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF 120
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
A S GQ++ + LAR + + +LDE T +D L+ +
Sbjct: 121 EDLPAA----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170
Query: 518 R 518
R
Sbjct: 171 R 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 34/215 (15%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415
+K ++ T+ + + I+G G+GKS+L + + E G I I+D S
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 416 ISIIPQDP-----------VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
I +I QDP + LR N D Q + + GL
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTD----------LEPEQRRKQIFETLRMVGL 138
Query: 465 NMTVYEGGTNF-----SVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLL-IQRT 516
N+ + GQ+Q + LARA++ I++ DEA A++D ++ L+ +
Sbjct: 139 ----LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+++K + H SD+VLVM G V
Sbjct: 195 LQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229
|
Length = 267 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 39/227 (17%)
Query: 347 NVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDID-- 403
VR LSG +++++ T+ E +GI G GAG++ L A+F G I +D
Sbjct: 265 EVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324
Query: 404 ---------------TEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448
ED R + ++ + + TL +L F + ++
Sbjct: 325 IRSPRDAIKAGIAYVPED------RKSEGLVLDMSIAENITLA-SLRRFSRR--GLIDRR 375
Query: 449 LQEVELKDMI--ME--GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ + I + + S G +Q + LAR + + +L+LDE T
Sbjct: 376 KERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431
Query: 505 VDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+D I R IR + A +L I+ L ++ SD++LVM G
Sbjct: 432 IDVGAKAEIYRLIR-ELAAEGKAILMISSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 336 PVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE- 394
VL E ++ +V+ G +K+++ + E +GI G G G+S L+ AI L +
Sbjct: 256 VVL---EVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS 312
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDP-----VLFSGTLRKNL-------DPFEKY 440
G I ++ D+ P + R ++ +P+D VL +L +NL PF +
Sbjct: 313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRG 371
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT-----NFSVGQRQLICLARAIVRNNVI 495
++ A+++ +++I E V + S G +Q + LAR + R +
Sbjct: 372 G-FLDRRAIRKF-ARELIEE-----FDVRAPSPDAPARSLSGGNQQKLILARELARRPDL 424
Query: 496 LVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
L+ + T +D I + + + A VL I+ L I++ SD++ V+ G
Sbjct: 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLS 410
SG + LNIT + + +G GAGK++ ++ + L G + + D E L
Sbjct: 941 SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNLD 999
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE 470
+R ++ + PQ +LF F W Q +E++ M +E GL+ E
Sbjct: 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-LEMEAM-LEDTGLHHKRNE 1057
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIA 530
+ S G ++ + +A A V + ++VLDE T+ VDP + I + K + T++
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117
Query: 531 HRLHTIMDSDKVLVMDSGVAVVS 553
H + D+ ++ +A++S
Sbjct: 1118 HHM------DEADLLGDRIAIIS 1134
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRS 414
++ +++T P G++G G+GKS+L+ + L G + + +D +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 415 NISIIPQD-----PVLFSGTLRKNLDPFEKYPDYVLWTA--LQEVELKDMIMEGAGLNMT 467
++++ QD P+ T+R + + P LW + + D + L+
Sbjct: 76 RVALVEQDSDTAVPL----TVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD-CTV 526
+ S G+RQ + +ARA+ + +L+LDE T ++D + L +R+ A TV
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190
Query: 527 LTIAHRL-HTIMDSDKVLVMDSGVAVVS 553
+ H L D V+V+D G V +
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAA 218
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSN 415
V+ N++ +I E + IVG +G+GKS+L+ + L D+ P+SKL S
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS----GDVIFNGQPMSKLSSA 79
Query: 416 ISIIPQDPVLFSGTLRKNLDPF-----EKYPDYVLWTALQEVELKDMI------------ 458
LR F PD+ TAL+ V + +I
Sbjct: 80 AK----------AELRNQKLGFIYQFHHLLPDF---TALENVAMPLLIGKKKPAEINSRA 126
Query: 459 ---MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----D 510
+ GL + S G+RQ + +ARA+V N +++ DE T N+D +
Sbjct: 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
Query: 511 LLIQRTIRKKFADCTV---LTIAHRLH 534
LL + + A V L +A R+
Sbjct: 187 LLGELNRLQGTAFLVVTHDLQLAKRMS 213
|
Length = 233 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 19/223 (8%)
Query: 341 IEFQNTNVRYLS----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I+F+ N Y R + ++++ + ++G TG+GKS+L+ + L + EG
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 396 VIKIDDI----DTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTAL 449
+ + DI ++ + +R + ++ Q P LF T+ K++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 450 QEVE-LKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
++ E + +E GL +E S GQ + + +A + +LVLDE TA +DP
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
K + + + + TV+ + H + + D +D V +++ G
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSN 415
V++NLN+ I P + + +VG++GAGK++L+ I + G ++ D ++ N
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG----EEKYRPDSGKVEVPKN 453
Query: 416 I--SIIPQ--DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV-YE 470
++IP +P T+ ++L + ++ I+ AGL+ V Y
Sbjct: 454 TVSALIPGEYEPEFGEVTILEHL-----------RSKTGDLNAAVEILNRAGLSDAVLYR 502
Query: 471 GGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVL 527
+ S GQ++ LA+ + +L++DE A++D T + + R I + + A T++
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 528 TIAHRLHTI--MDSDKVLVMDSGVAVVS 553
+ HR + D ++++ G V+
Sbjct: 563 VVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDI-- 402
V+ G + + +++ + P E +G+ G GAGKS+L ++ ++ +G I
Sbjct: 8 VKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPL 67
Query: 403 ------DTEDVPLSKLRSNISIIPQDPVL---FSGTLRKNLDPFEKYPDYVLWTA--LQE 451
DTE + + ++++P+ V F G Y L L+E
Sbjct: 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TD 510
++L N+T G ++ GQ+QL+ +A+A+ + +L+LDE ++++ K T+
Sbjct: 128 LQLDAD-------NVTRPVG--DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 511 LL--IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+L I R ++ C + I+H+L+ + D + V+ G
Sbjct: 179 ILLDIIRDLKAHGVAC--VYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 351 LSGPRVIKNLN---ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVIKIDDIDTE 405
R++K L+ T+ + + +VG +G GKS+L A + + E G + D
Sbjct: 22 FKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTL-ARLLTMIETPTGGELYYQGQDLL 80
Query: 406 DVP---LSKLRSNISIIPQDPVLFSGTL--RKNLDPFEKYPDYVLWTALQEVELKDMI-- 458
LR I I+ Q+P G+L RK + + P ++ T+L E ++
Sbjct: 81 KADPEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEP-LLINTSLSAAERREKALA 136
Query: 459 -MEGAGLNMTVYEGGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
M GL Y+ + FS GQRQ I +ARA++ + ++V DE + + D+ +Q
Sbjct: 137 MMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL----DVSVQAQ 192
Query: 517 IRKKFAD------CTVLTIAHRL----HTIMDSDKVLVMDSGVAV 551
+ D + + I+H L H +D+V+VM G V
Sbjct: 193 VLNLMMDLQQELGLSYVFISHDLSVVEHI---ADEVMVMYLGRCV 234
|
Length = 327 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + R+ + ++++ I E + ++G +G+GK++L+ I L G I
Sbjct: 3 IEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNL------DPFEKYPDYVLWTALQEV 452
D DVP+ + N+ + Q LF T+ N+ P + P E
Sbjct: 62 GGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP--------EA 111
Query: 453 ELKDMIMEGAGLNMTVYEGGTN-----FSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
E++ + E L + + + S GQRQ + LARA+ +L+LDE +D
Sbjct: 112 EIRAKVHEL--LKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
Query: 508 KTDLLIQRTIRKKFADCTVLTI--AHRLHTIMD-SDKVLVMDSG 548
K ++R +R+ + V T+ H ++ +D+V+VM+ G
Sbjct: 170 KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414
+ N++ + P E G++G GAGK++ I L E EG I + PLS+
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN-----GGPLSQEIK 71
Query: 415 N-ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA------LQEVELK-DMIMEGAGLNM 466
N I +P++ + L P D + + A E++ K +E +
Sbjct: 72 NRIGYLPEE---------RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG 122
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP-KTDLLIQRTIRKKFADCT 525
+ S G +Q I A++ +L+LDE + +DP +LL K T
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 526 VLTIAHRLHTIMD-SDKVLVMDSGVAVV--------SSFGFFFSKDLIEGTVSAKVLSS 575
++ +HR+ + + D++L++ G V+ SFG + +IE +S + L++
Sbjct: 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG--KKRLVIESDLSLEELAN 239
|
Length = 300 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 52/238 (21%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA---AIFRLAEVEGVI 397
IE ++ + RY G + +K L+++I K ++G GAGKS+L+ I+ L + G +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQ-RGRV 62
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPDYVLWTA 448
K+ + +RS + ++ QDP +FS T+ N+ + + + A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L+ V + D + + S GQ++ + +A + + ++VLDE A +DP+
Sbjct: 123 LKAVRMWDF----------RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 509 TDLLIQRTIRKKFADCTVLTIAHRLH----TIMDS-----------DKVLVMDSGVAV 551
Q T+ I RLH T++ + D+V+V+ G +
Sbjct: 173 G----QETLM---------EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217
|
Length = 274 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 34/228 (14%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----AEVEG 395
+EF++ + Y + + +++ +I ++G G+GKS++ I L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDY 443
I +D I + +R + I+ Q+P V F L P +
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG--LENRAVPRPEMIKI 123
Query: 444 VLWTALQEVELKDMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
V L +V + D I E A N S GQ+Q + +A + I++LDE+T
Sbjct: 124 VR-DVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDEST 171
Query: 503 ANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ +DP I + IRK K + TV++I H + +D+VLV+D G
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVI-- 397
I F++ + YL G + ++ + + P E + G +GAGKS+L+ I + G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 398 ---KIDDIDTEDVPLSKLRSNISIIPQD-PVLFSGTLRKNLDPFEKYPDYVLWTALQEVE 453
I + +VP LR I +I QD +L T+ N+ P + + ++
Sbjct: 62 SGHDITRLKNREVPF--LRRQIGMIFQDHHLLMDRTVYDNV----AIPLIIAGASGDDIR 115
Query: 454 LK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+ ++ GL S G++Q + +ARA+V +L+ DE T N+D
Sbjct: 116 RRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 26/190 (13%)
Query: 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
+I E IGI+G G GK++ I LA GV+K D+ D E +S PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKM---LA---GVLKPDEGDIE-----IELDTVSYKPQY 69
Query: 423 -PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-TNFSVGQR 480
+ GT+R L D+ + K + +E + + S G+
Sbjct: 70 IKADYEGTVRDLL--SSITKDFYTHPYFKTEIAKPLQIEQ------ILDREVPELSGGEL 121
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTI- 536
Q + +A + ++ I +LDE +A +D + L+ + IR +FA + T + H + I
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR-RFAENNEKTAFVVEHDIIMID 180
Query: 537 MDSDKVLVMD 546
+D+++V +
Sbjct: 181 YLADRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
IE ++ Y + N+N +I ++G GAGKS+L I + +I
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPDYVLWTA 448
+ + I E++ ++R + ++ Q+P +FS T+ + NL E+ + + +A
Sbjct: 64 RGEPITKENI--REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L + L+++ + S G+++ + +A I +LVLDE TA +DP+
Sbjct: 122 LHMLGLEELRDRVP----------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 509 TDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ + + TV+ H+L + + +D + VMD G
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 49/212 (23%), Positives = 100/212 (47%), Gaps = 28/212 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKID--DIDTEDVPLSKL 412
+ +++ ++ E +G+ G GAG++ L+ A+F EG + I+ +D + P +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN-PAQAI 334
Query: 413 RSNISIIPQD-------PVLFSGTLRKN--LDPFEKYPDYVLWTALQEV-----ELKDMI 458
R+ I+++P+D P+L G KN L + + + A E+ ++ +
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLK 391
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
++ A + + S G +Q LA+ ++ N +L+LDE T VD I + I
Sbjct: 392 VKTASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447
Query: 519 KKFAD-CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ + ++ ++ L ++ SD+VLV+ G
Sbjct: 448 QLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 352 SGPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP- 408
+G V + ++++ + E I+G +G+GKS+L+ I RL E G + ID D +
Sbjct: 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR 93
Query: 409 --LSKLRSN-ISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDM-IMEGAG 463
L +LR IS++ Q L T+ +N+ + V E E + +E G
Sbjct: 94 KELRELRRKKISMVFQSFALLPHRTVLENV----AFGLEVQGVPRAEREERAAEALELVG 149
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP------KTDLL-IQRT 516
L ++ S G +Q + LARA+ + IL++DEA + +DP + +LL +Q
Sbjct: 150 LEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 517 IRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
++K T++ I H L + D++ +M G V
Sbjct: 210 LQK-----TIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 372 IVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-T 429
++G +G GK++L+ + + G I +D D +VP LR I+++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYEGG--TNFSVGQRQLICLA 486
+ +N+ + + + E+K ++E L + + S GQ+Q + LA
Sbjct: 59 VEENV----AFG--LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQ---RTIRKKFADCTVLTIAHRLHTIMDSDKVL 543
RA+V IL+LDE + +D K +Q +TI+++ V + + SD++
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 544 VMDSG 548
+M G
Sbjct: 173 IMRKG 177
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 24/178 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E + + + G VI NL++TI+ E + ++G +G GK++++ I G I +
Sbjct: 15 VELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLD--------PFEKYPDYVLWTALQ 450
D D VP +++ + Q LF T+ +N+ P + V+ AL+
Sbjct: 74 DGQDITHVPAEN--RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM-EALR 130
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
V+L++ S GQ+Q + +ARA+V +L+LDE+ + +D K
Sbjct: 131 MVQLEEFA----------QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 49/240 (20%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE------GVIKIDDIDTEDVP 408
+ + N ++T + ++G TG+GKS++I L E G I +
Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84
Query: 409 LSKLRSNISIIPQDP--VLFSGTLRKNL------------DPFEKYPDYVLWTALQEVEL 454
+ +LR I ++ Q P LF T+ K++ + ++K P+ + L E +
Sbjct: 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV 144
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD---- 510
K E +G GQ++ + LA I + LVLDE T +DPK +
Sbjct: 145 KRSPFELSG--------------GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI 190
Query: 511 ---LLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG--VAVVSSFGFFFSKDLI 564
+ + +K+ ++ + H + ++ +D+V+VM G +++ S F F +++L+
Sbjct: 191 NLFERLNKEYKKR-----IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
|
Length = 289 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 19/164 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE----GVIKIDDIDTEDVP 408
G + ++++TI+ E ++G +G GKS+L+ LA E G I +D +D VP
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRM---LAGFEQPTAGQIMLDGVDLSHVP 87
Query: 409 LSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NM 466
+ I+++ Q LF T+ +N+ F D L + E+ + E GL +M
Sbjct: 88 --PYQRPINMMFQSYALFPHMTVEQNI-AFGLKQD-----KLPKAEIASRVNEMLGLVHM 139
Query: 467 TVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+ S GQRQ + LAR++ + +L+LDE +D K
Sbjct: 140 QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLR-- 413
+ + ++ + E I+G +G+GKS+L+ + RL E G I +D D + ++LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 414 --SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM-IMEGAGLNMTVYE 470
IS++ Q L R L+ + V E E + + +E GL +
Sbjct: 104 RRKKISMVFQSFALLPH--RTVLENVA-FGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTD-----LLIQRTIRKKFAD 523
S G +Q + LARA+ + IL++DEA + +DP +T+ L +Q ++K
Sbjct: 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK---- 216
Query: 524 CTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T++ I H L + D++ +M G V
Sbjct: 217 -TIVFITHDLDEALRIGDRIAIMKDGEIV 244
|
Length = 386 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 339 GKIEFQNTNVRYLSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE 394
GKIE + N RY+S P V K+L + K+ IVG TG+GKS++++ + R +++
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221
|
Length = 1466 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRS 414
V +NL + I I+G G GKS+L+ + RL G + +D + ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI---MEGAGLNMTVYEG 471
I ++ Q+ + L +YP L+T ++ E ++ + M+ G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK-EDEEAVTKAMQATGITHLADQS 140
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATA--NVDPKTDLL 512
S GQRQ +A + + I++LDE T ++ + DLL
Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
|
Length = 265 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 32/214 (14%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415
+K L+ T+ + + I+G G+GKS+L + + E G + IDD S
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 416 ISIIPQDPV-----------LFSGTLRKN--LDPFEKYPDYVLWTALQEVELKDMIMEGA 462
I +I QDP + LR N L+P ++ + + L++V L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQR--EKQIIETLRQVGL-------- 138
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTI 517
L + GQ+Q + LARA++ +++ DEA A++D +L+++ +
Sbjct: 139 -LPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLE--L 195
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
++K + H SD+VLVM G V
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
Length = 267 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRS 414
V+ L++ I + + +VGR+G GKS+L+ + L ++ PL++ R
Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA----GELLAGTAPLAEARE 81
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYV------LW--TALQEVELKDMIMEGAGLNM 466
+ ++ QD L P++K D V W ALQ + GL
Sbjct: 82 DTRLMFQDARLL---------PWKKVIDNVGLGLKGQWRDAALQA-------LAAVGLAD 125
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--C 524
E S GQ+Q + LARA++ +L+LDE +D T + +Q I +
Sbjct: 126 RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 525 TVLTIAHRL-HTIMDSDKVLVMDSG 548
TVL + H + + +D+VL+++ G
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 63/262 (24%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI 399
IEF+ ++ G + + +++T+ E G+VG +G+GKS + AI + + +
Sbjct: 11 IEFKTSD-----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTA 65
Query: 400 DDIDTEDVPLSKLRS---------NISIIPQDPVLFSGTLRKNLDPFEKYPDYVL----- 445
D + +D+ L +L N+S+I Q+P + LDP E+ ++
Sbjct: 66 DRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP-------QSCLDPSERVGRQLMQNIPG 118
Query: 446 WT------------------ALQEVELKDM--IMEGAGLNMTVYEGGTNFSVGQRQLICL 485
WT L V +KD M +T G+ Q + +
Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT---------EGECQKVMI 169
Query: 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKV 542
A A+ +L+ DE T ++P T I R + + + + T+L I+H L + +DK+
Sbjct: 170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229
Query: 543 LVMDSGVAVVSSFGFFFSKDLI 564
V+ G V ++ SK+L+
Sbjct: 230 NVLYCGQTVETA----PSKELV 247
|
Length = 330 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ +V + G + + +L+ ++ P E ++G GAGK++L+ I EG +
Sbjct: 6 LYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64
Query: 400 DDIDTEDVPLSKL------RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTAL--- 449
D D L+KL R+ I Q P +F T+R+NL+ V + +L
Sbjct: 65 DG----DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV-FASLFAR 119
Query: 450 ---QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV- 505
+E D ++ GL S GQ+Q + + + ++ +L+LDE A +
Sbjct: 120 LRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179
Query: 506 ---DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
KT L++ K ++L + H + + + +DKV V+ G
Sbjct: 180 DAETEKTAELLKSLAGK----HSILVVEHDMGFVREIADKVTVLHEG 222
|
Length = 249 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 58/263 (22%)
Query: 304 NHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNIT 363
+I V + + ++ E + S + EF +K+++
Sbjct: 1 MVVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW-----------ALKDISFE 49
Query: 364 IHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDV-PLSKL------- 412
I+ E++GI+G GAGKS+L IA I++ G +K+ T V PL +L
Sbjct: 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPT--SGKVKV----TGKVAPLIELGAGFDPE 103
Query: 413 ---RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
R NI + L G RK +D E D I+E A L +
Sbjct: 104 LTGRENIYLR----GLILGLTRKEID-----------------EKVDEIIEFAELGDFID 142
Query: 470 EGGTNFSVGQRQLICLARAIVR--NNVILVLDEATANVDPK-TDLLIQRTIRKKFADCTV 526
+ +S G LA ++ IL+LDE A D + ++R + T+
Sbjct: 143 QPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 527 LTIAHRLHTIMD-SDKVLVMDSG 548
+ ++H L I D+ + ++ G
Sbjct: 201 VLVSHDLGAIKQYCDRAIWLEHG 223
|
Length = 249 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 32/213 (15%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKL---RSNI 416
L+ + E + +VG GAGKS+L+A + L G I+ E ++L R+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 417 SIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQEVE-LKDMIMEGAGLNMTVYE 470
S Q F + F+ Y PD T + V + + E GL+ +
Sbjct: 75 S--QQQTPPF------AMPVFQ-YLTLHQPDK---TRTEAVASALNEVAEALGLDDKLGR 122
Query: 471 GGTNFSVGQRQLICLARAIVR-------NNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
S G+ Q + LA +++ +L+LDE ++D + R + +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS-ELCQ 181
Query: 524 C--TVLTIAHRL-HTIMDSDKVLVMDSGVAVVS 553
V+ +H L HT+ +D+V ++ G + S
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214
|
Length = 248 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-05
Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 60/182 (32%)
Query: 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE--GVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
P E I IVG G+GK++L A+ R GVI ID D + L +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL---------- 50
Query: 424 VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483
+ V + S R +
Sbjct: 51 -----------------------------------------LIIVGGKKASGSGELRLRL 69
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR-------KKFADCTVLTIAHRLHTI 536
LA A +L+LDE T+ +D + + L+ K + TV+ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 537 MD 538
Sbjct: 130 GP 131
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLL--IQRTIRKKFADCTV 526
S GQ+Q + +ARA+ N +L+ DEAT+ +DP T +LL I R + T+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-----GLTI 194
Query: 527 LTIAHRLHTIMD-----SDKVLVMDSGVAV 551
+ I H MD D+V V+D+G V
Sbjct: 195 VLITHE----MDVVKRICDRVAVIDAGRLV 220
|
Length = 343 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF---RLAEVEGVIKIDDIDT 404
V + +G +++ + T+ +VG G+GKS+L A+ RLA G I I T
Sbjct: 14 VTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS--GKISILGQPT 71
Query: 405 EDVPLSKLRSN-ISIIPQD-------PVLFS-----------GTLRKNLDPFEKYPDYVL 445
L+ N ++ +PQ PVL G LR+ +K ++
Sbjct: 72 RQA----LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIV 123
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL V++ + G S GQ++ + LARAI + +++LDE V
Sbjct: 124 TAALARVDMVEFRHRQIG----------ELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
Query: 506 DPKTDLLIQRTIRKKFAD-CTVLTIAHRLHTIMDSDKVLVMDSGVAVVS 553
D KT+ I +R+ + T+L H L ++ + VM G + S
Sbjct: 174 DVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLAS 222
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSK 411
G + + N+N+ + P ++G GAGKS+L+ +F + + G I + D SK
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI-DFKSSK 68
Query: 412 --LRSNISIIPQD-PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM------IMEGA 462
L + IS++ Q+ ++ ++ N+ +YP ++ V+ M I +
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNM-WLGRYPTKGMF-----VDQDKMYRDTKAIFDEL 122
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KF 521
+++ SV Q Q+I +A+A N I+++DE T+++ K + IRK K
Sbjct: 123 DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182
Query: 522 ADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
C ++ I+H++ I D++ ++ G
Sbjct: 183 RGCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 341 IEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEG 395
I QN + Y +G R + ++N+TI +G TG+GKS+++ + L +G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 396 VIKIDDI----DTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNL----DPFEKYPDYVL 445
+++DD +++ + ++R + ++ Q P LF T+ K++ F +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATAN 504
A +++ L G++ +++E S GQ + + +A + ILVLDE TA
Sbjct: 123 ALAREKLAL-------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 505 VDPK--TDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+DPK +L+ T+ KK + T++ + H + + + +D V V++ G V+S
Sbjct: 176 LDPKGRKELM---TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226
|
Length = 280 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L+ V L + AG N + GQ++ + +AR +V IL+LDE A ++PK
Sbjct: 138 LERVGLLEHANRQAG----------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK 187
Query: 509 --TDL--LIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+L LI +R + + TVL I H + +M SD++ V++ G
Sbjct: 188 ETKELDELIAE-LRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD----IDTEDVPLS 410
VI NLN+TI + ++G +G GK++ + RL V G+ K + ID EDV
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTT----VLRL--VAGLEKPTEGQIFIDGEDVTHR 73
Query: 411 KLRS-NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV---ELKDMIMEGAGLN 465
++ +I ++ Q LF +L +N+ Y L + V E K + E L
Sbjct: 74 SIQQRDICMVFQSYALFPHMSLGENVG-------YGL--KMLGVPKEERKQRVKEA--LE 122
Query: 466 MTVYEGGTN-----FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
+ G + S GQ+Q + LARA++ +L+ DE +N+D ++R++R+K
Sbjct: 123 LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREK 178
Query: 521 FA------DCTVLTIAH-RLHTIMDSDKVLVMDSG 548
+ T L + H + SD V+VM+ G
Sbjct: 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF--RLAEVEGVIKIDDIDTEDV 407
++ L +T + ++G TGAGKSSLI A+F + EV V DI T
Sbjct: 29 LRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR 81
|
Length = 296 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 40/229 (17%)
Query: 353 GPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLS 410
G ++++ ++P E +GIVG +G+GKS+L+ + RLA G ++ L
Sbjct: 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY 73
Query: 411 KL---------RSNISIIPQDP-------VLFSGTLRKNL-DPFEKYPDYVLWTA---LQ 450
+L R+ + Q+P V + + L ++ + TA L+
Sbjct: 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT- 509
EVE+ ++ + FS G +Q + +AR +V ++ +DE T +D
Sbjct: 134 EVEIDPTRID---------DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 184
Query: 510 ----DLLIQRTIRKKFADCTVLTIAHRLHTI-MDSDKVLVMDSGVAVVS 553
DLL + +R V+ + H L + + ++LVM G V S
Sbjct: 185 ARLLDLL-RGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSL 383
+K+++ + E+IG++GR GAGKS+L
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTL 64
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 49/195 (25%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 372 IVGRTGAGKSSLIAAIFRLAEV-EGVIKIDD---IDTE-DVPLSKLRSNISIIPQDPVLF 426
+ G +G+GK+SLI I L EG I+++ +D E + L + I + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 427 SG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485
T+R NL Y +W +++ + D ++ G+ + S G++Q + +
Sbjct: 89 PHYTVRGNL-------RYGMWKSMRA-QF-DQLVALLGIEHLLDRYPGTLSGGEKQRVAI 139
Query: 486 ARAIVRNNVILVLDEATANVD-PKTDLLIQ--RTIRKKFADCTVLTIAHRLHTIMD-SDK 541
RA++ +L++DE A++D P+ ++ +R + + +L ++H L ++ +D+
Sbjct: 140 GRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADR 198
Query: 542 VLVMDSGVAVVSSFG 556
V+V+++G V + G
Sbjct: 199 VVVLENG--KVKASG 211
|
Length = 352 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 52/195 (26%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLI----------AAI 387
+E ++ Y SG V+K +++ I+ E + IVG +G+GKS+L+ +
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 388 FRLAEVEGVIKIDDIDTEDVPLSKL-RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446
+R+A + + +D + L++L R + I F++Y
Sbjct: 65 YRVAGQD----VATLDADA--LAQLRREHFGFI-----------------FQRYHLLSHL 101
Query: 447 TALQEVEL---------------KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491
TA Q VE+ +++ GL V + S GQ+Q + +ARA++
Sbjct: 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161
Query: 492 NNVILVLDEATANVD 506
+++ DE T +D
Sbjct: 162 GGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 66/226 (29%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNI 416
+++++ I E +G +G GAGKS+ + K+ + +
Sbjct: 40 VQDISFEIPKGEIVGFLGANGAGKSTTL--------------------------KMLTGL 73
Query: 417 SIIPQDPVLFSGTLRKN-LDPFEKYPDYVLWTAL-----QEVELKDMIMEGAGLNMTVYE 470
++P SG +R N DPF + +Y+ L ++ ++ + +YE
Sbjct: 74 -LLPT-----SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE 127
Query: 471 -GGTNF------------------------SVGQRQLICLARAIVRNNVILVLDEATANV 505
F S+GQR LA A++ +L LDE T +
Sbjct: 128 IPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187
Query: 506 DPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSG 548
D I+ +++ TVL H I D+VL++D G
Sbjct: 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233
|
Length = 325 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 85/360 (23%), Positives = 144/360 (40%), Gaps = 64/360 (17%)
Query: 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVT 283
L F Y+ +S W F + + + F + +L F A G++
Sbjct: 657 LKLSFQYY---NSHKWRNF---GIIIGFTVFFFFV---YILLTEFNKGAKQKGEI----- 702
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343
+ G ++ A + ++ ++ E + S + DE ++ G+ F
Sbjct: 703 -LVFRRGSLKRAKKAGETSASNKNDIEA-GEVLGSTDLTDESDDVNDEKDMEKESGEDIF 760
Query: 344 Q----NTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGV 396
V+ RVI N++ + P ++G +GAGK++L+ LAE GV
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGV 817
Query: 397 IKIDDIDTEDVPL--SKLRSNISIIPQD----------PVLFSGTLR--KNLDPFEK--Y 440
I D PL S RS + QD + FS LR K++ EK Y
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 441 PDYVLWTALQEVE-LKDMIM--EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
+ V+ L E+E D ++ G GLN V QR+ + + +V +L+
Sbjct: 878 VEEVI--KLLEMESYADAVVGVPGEGLN-----------VEQRKRLTIGVELVAKPKLLL 924
Query: 498 -LDEATANVDPKTDLLIQRTIRKKFADC--TVL-TIAHRLHTIMDS-DKVLVMDSGVAVV 552
LDE T+ +D +T I + +R K AD +L TI + + D++L++ G V
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMR-KLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
I+ E IGI+G G GK++ + LA GVIK D+ ED+ +S IS
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKL---LA---GVIKPDEGSEEDLKVSYKPQYISPDYDG 416
Query: 423 PV--LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480
V L +R + T I++ L + S G+
Sbjct: 417 TVEDLLRSAIR------SAFGSSYFKTE---------IVKPLNLEDLLERPVDELSGGEL 461
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTI- 536
Q + +A A+ R + +LDE +A +D + +++ + IR +F + T L + H ++ I
Sbjct: 462 QRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR-RFIENNEKTALVVDHDIYMID 520
Query: 537 MDSDKVLV 544
SD+++V
Sbjct: 521 YVSDRLIV 528
|
Length = 591 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IEF+N + + V+ N+++ I E + I+G +G+GKS+L+ I +L E+ G + +
Sbjct: 2 IEFKNVSKHFGPTQ-VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV------- 452
D + D + + +I Q+ +G + F+++ + TAL+ V
Sbjct: 61 DGLKVNDP-----KVDERLIRQE----AGMV------FQQFYLFPHLTALENVMFGPLRV 105
Query: 453 ------ELKDMIME---GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
E + E GL + + S GQ+Q + +ARA+ +++ DE T+
Sbjct: 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 504 NVDP 507
+DP
Sbjct: 166 ALDP 169
|
Length = 240 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 347 NVRYLSGPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+ L GP ++++ ++P E +GIVG +G+GK++L+ I RL G + D
Sbjct: 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDG 70
Query: 405 EDVPLSKL---------RSNISIIPQDP 423
+ L + R+ + Q+P
Sbjct: 71 QPRDLYTMSEAERRRLLRTEWGFVHQNP 98
|
Length = 258 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 48/219 (21%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAEVEGVIKIDDIDTEDVPLS- 410
+K ++ TI E +G +G GAGK++ + + + L G +++ + VP
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAGL----VPWKR 88
Query: 411 --KLRSNISIIPQD--------PVLFSGTLRK---NLDPFEKYPDYVLWTALQEV-ELKD 456
K I ++ PV+ S L +L P + + EL +
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPAR---------FKKRLDELSE 139
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
++ L+ V S+GQR +A A++ IL LDE T + D++ Q
Sbjct: 140 LLDLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL----DVVAQEN 191
Query: 517 IRK------KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
IR + TVL +H + I + +VLV+D G
Sbjct: 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 9/206 (4%)
Query: 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTE 405
RY P V+K LN+ G+VG G GKS+L ++ + R + + + +D
Sbjct: 10 RYQDEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS 68
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK-DMIMEGAGL 464
L LR ++ + QDP ++D + L E+ + D +
Sbjct: 69 KRGLLALRQQVATVFQDPE--QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA 126
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC 524
++ S GQ++ + +A A+V L+LDE TA +DP + IR+ A
Sbjct: 127 QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 525 TVLTI-AHRLHTIMD-SDKVLVMDSG 548
+ I +H + I + SD V V+ G
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
+ F + Y + + +++ I+ E + ++G GAGK++L+ + G I
Sbjct: 6 LSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64
Query: 400 DDIDTEDVPLSK-LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPD-----------YVLW 446
D D D +K +R ++I+P+ +FS T+ +NL + + Y L+
Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 124
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
L E ++ GT S G++Q++ + RA++ +L+LDE + +
Sbjct: 125 PRLHERRIQ--------------RAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Query: 507 PKTDLLIQRTIRK 519
P I TI +
Sbjct: 170 PIIIQQIFDTIEQ 182
|
Length = 237 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD-CTVLTIAH 531
FS G++Q + +AR + + IL+LDE TA++D ++ I + A ++ I H
Sbjct: 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 38/219 (17%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--AEVEGVIKID----DIDTEDVP 408
+ + +++ ++ E +GI G GAG++ L+ +F EG I ID I P
Sbjct: 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN---P 332
Query: 409 LSKLRSNISIIPQD-------PVLFSG---TLRKNLDPFEKYPDYVLWTALQ----EVEL 454
+ I+++P+D PV+ G TL LD F + A + +
Sbjct: 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITL-AALDRFTGGS--RIDDAAELKTILESI 389
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD--PKTDL- 511
+ + ++ A + + S G +Q LA+ ++ N IL+LDE T +D K ++
Sbjct: 390 QRLKVKTASPELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY 445
Query: 512 -LIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
LI + +++ A ++ I+ L ++ SD+VLVM G
Sbjct: 446 KLINQLVQQGVA---IIVISSELPEVLGLSDRVLVMHEG 481
|
Length = 506 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 371 GIVGRTGAGKSSLIAAIFR--LAEVEGV 396
G++G+TGAGKSSL A+F +A V
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDR 28
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 13/200 (6%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKID--DIDTEDVPLSKLR 413
+K +N+TI E I ++G +G GKS+L+ I LA+ G + ++ I +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
N S++P T+R+N+ L + + +++ I GL +
Sbjct: 61 QNYSLLPWL------TVRENIALAVDRVLPDLSKSERRAIVEEHI-ALVGLTEAADKRPG 113
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAH 531
S G +Q + +ARA+ +L+LDE +D T +Q + + + TVL + H
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
Query: 532 RL-HTIMDSDKVLVMDSGVA 550
+ ++ SD+V+++ +G A
Sbjct: 174 DVDEALLLSDRVVMLTNGPA 193
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
++ Q Y +VIK +++ + E I +VG +G GKS+L+ + L + G I
Sbjct: 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 399 IDD 401
I
Sbjct: 63 IGG 65
|
Length = 356 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 341 IEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I FQ RY R + ++N++I + I+G TG+GKS+L+ + L + G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 396 VIKIDD----IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLD--------PFEKYP 441
+ I + ++ L LR + I+ Q P LF T+ K++ E
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED-- 120
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDE 500
A Q+ ++MI E GL + S GQ + + +A + +LVLDE
Sbjct: 121 ------AKQKA--REMI-ELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 501 ATANVDPKTDLLIQRTIRKKFA------DCTVLTIAHRLHTIMD-SDKVLVMDSG 548
TA +DPK ++ + + F T + + H + +D+++VM G
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222
|
Length = 290 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 31/187 (16%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL----- 409
+ + +++ IH E + ++G +G+GKS+L L + G+I D + L
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTL------LRHLSGLITGDKSAGSHIELLGRTV 71
Query: 410 ----------SKLRSNISIIPQDPVLFSG-TLRKNL-------DPFEKYPDYVLWTALQE 451
K R+N I Q L + ++ +N+ PF + W ++
Sbjct: 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF--WRTCFSWFTREQ 129
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
+ + G+ ++ + S GQ+Q + +ARA+++ +++ DE A++DP++
Sbjct: 130 KQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189
Query: 512 LIQRTIR 518
++ T+R
Sbjct: 190 IVMDTLR 196
|
Length = 262 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 347 NVRYLSGPRVI-KNLNITIHPKEKI-GIVGRTGAGKSSLIAAI-FRLAEVEGVIKIDDID 403
V + G R I N+++T+ P+ KI I+G +G GK++L+ I ++A G I D
Sbjct: 12 GVSFTRGNRCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG-- 68
Query: 404 TEDVP------LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW-----TALQEV 452
E++P L +R +S++ Q SG L +++ F+ V + T L
Sbjct: 69 -ENIPAMSRSRLYTVRKRMSMLFQ-----SGALFTDMNVFDN----VAYPLREHTQLPAP 118
Query: 453 ELKDMIM---EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
L +M E GL + S G + LARAI +++ DE DP T
Sbjct: 119 LLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 56/234 (23%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG----------------VIKID 400
++NL+ ++ E + IVG +G+GKS A+ RL E G VI++
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 401 DIDTEDVPLSKLR-SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
+ + +R +++++I Q+P+ +L+P ++T +++ +
Sbjct: 92 E--QSAAQMRHVRGADMAMIFQEPM-------TSLNP--------VFTVGEQIAESIRLH 134
Query: 460 EGAGLNMTVYEGGT-------------------NFSVGQRQLICLARAIVRNNVILVLDE 500
+GA + E S G RQ + +A A+ +L+ DE
Sbjct: 135 QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADE 194
Query: 501 ATANVDPKTDLLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T +D I + I+ +K V+ I H + + + +D+VLVM G AV
Sbjct: 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
Length = 623 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 475 FSVGQRQLICLARAIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKFADCTV-LTIAHR 532
S+GQRQ++ +A+A+ RN ++ DE T+++ + + L R IR+ A+ V L ++HR
Sbjct: 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHR 199
Query: 533 LHTIMD-SDKVLVMDSG 548
+ I D + V G
Sbjct: 200 MEEIFALCDAITVFKDG 216
|
Length = 501 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 597 | |||
| KOG0058|consensus | 716 | 100.0 | ||
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| KOG0054|consensus | 1381 | 100.0 | ||
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| KOG0060|consensus | 659 | 100.0 | ||
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.98 | |
| KOG0064|consensus | 728 | 99.98 | ||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.98 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| KOG0061|consensus | 613 | 99.97 | ||
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.95 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| KOG0927|consensus | 614 | 99.93 | ||
| KOG0065|consensus | 1391 | 99.93 | ||
| KOG0059|consensus | 885 | 99.93 | ||
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.92 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.92 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.91 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.9 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.89 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.89 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.89 | |
| KOG0062|consensus | 582 | 99.89 | ||
| KOG0927|consensus | 614 | 99.87 | ||
| KOG0066|consensus | 807 | 99.87 | ||
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.86 | |
| KOG0062|consensus | 582 | 99.85 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.85 | |
| KOG2355|consensus | 291 | 99.84 | ||
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.83 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.82 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.82 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.82 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.81 | |
| KOG0065|consensus | 1391 | 99.78 | ||
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.78 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.77 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.74 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.74 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.71 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.71 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.71 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.69 | |
| KOG0066|consensus | 807 | 99.68 | ||
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.67 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.65 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.65 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.64 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.63 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.56 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.55 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.53 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.52 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.51 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.51 | |
| KOG0063|consensus | 592 | 99.47 | ||
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.39 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.37 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.36 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.35 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.34 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.31 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.3 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.29 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.2 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.18 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.15 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.12 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.1 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 99.09 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.08 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.08 | |
| KOG0063|consensus | 592 | 99.07 | ||
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.07 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.06 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.04 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.04 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.0 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.0 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.96 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.94 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.93 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.93 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.89 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.86 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.85 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.84 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.82 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.81 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.8 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.68 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.6 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.49 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.49 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.48 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.47 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.47 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.45 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.44 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.44 | |
| PRK11098 | 409 | microcin B17 transporter; Reviewed | 98.43 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.38 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 98.35 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.35 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.34 | |
| PRK12369 | 326 | putative transporter; Reviewed | 98.31 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.31 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.28 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.28 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.28 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.26 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.26 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.25 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.22 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.22 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.2 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.19 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.19 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.18 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.15 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.12 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.12 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.12 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.1 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.1 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.09 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.08 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 98.08 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 98.0 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.99 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.99 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.98 |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-108 Score=884.65 Aligned_cols=529 Identities=23% Similarity=0.313 Sum_probs=459.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTIN-QHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.+.+..+++.|.+..+++|.... ... ..........+.++.++..++++++.+++.++++++..++|.++|+++++
T Consensus 157 ~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~ 233 (716)
T KOG0058|consen 157 LVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLR 233 (716)
T ss_pred HHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788889888899988776 221 12233456667777888889999999999999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
++.+|||.+.+||+++|++.|+..+.+.+...+...+.+.+..++++++|+++||.+++++++.+|+...+.++|.+..+
T Consensus 234 QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~r 313 (716)
T KOG0058|consen 234 QDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLR 313 (716)
T ss_pred hhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999988
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCL-LYLSTILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 267 (597)
++.+..+.+-++.++...|.+++++|||+|+.|+.+.++|.+..+...+...+.......+....++... ..+.++.++
T Consensus 314 klS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~G 393 (716)
T KOG0058|consen 314 KLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYG 393 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhc
Confidence 8888888888889999999999999999999999999999988776544332222111222222222222 122222222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.... .++.|.+..|+.|...+...+..+...+..+.++.++.+|++|++|.+|..+.. .. ..+. ...|.|+|+
T Consensus 394 g~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~--~~p~-~~~G~IeF~ 469 (716)
T KOG0058|consen 394 GHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GT--LAPD-HLQGVIEFE 469 (716)
T ss_pred cchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-Cc--cccc-cccceEEEE
Confidence 2222 457788999999999999999999999999999999999999999987754332 11 1111 357899999
Q ss_pred eeEEEeCCCC--ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 345 NTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 345 nVsf~Y~~~~--~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
||+|+||.+| +||+|+||+|+|||+||+||||||||||+++||.||| |++|+|++||+||+++++.+||++||+|.|
T Consensus 470 ~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q 549 (716)
T KOG0058|consen 470 DVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ 549 (716)
T ss_pred EeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec
Confidence 9999998765 5999999999999999999999999999999999999 578999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 422 DPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
||.||++||+|||.|| .++++|||++||+.|++||||.++ +||||.|||+|..|||||||||||||||+|||.|||||
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD 629 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD 629 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999998 579999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE---------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---------~~~g~y~~l~~~~ 565 (597)
|||||||+++|..||++|++.++++|||+|||||||+++||+|+|+|+|+++| +++|.|+++++.+
T Consensus 630 EATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 630 EATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred chhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 4558999998755
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-96 Score=822.35 Aligned_cols=545 Identities=21% Similarity=0.276 Sum_probs=460.0
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 14 TVTATREEYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMR 93 (597)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (597)
....+...|.+..+..++..++.+..|.++..++|..+..... .+.....+.+++..++..++.++|.++..+++.+
T Consensus 148 ~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~---~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~r 224 (709)
T COG2274 148 LLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR---STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKR 224 (709)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666777778888888888888887765421 1122333444455666678899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 94 CSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL 173 (597)
Q Consensus 94 ~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~ 173 (597)
+..++-.++|+|++++|++||+++++||+++|+. |.++|++++.......+.+++++++.+++|++++|.+++++++.+
T Consensus 225 ld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~ 303 (709)
T COG2274 225 LDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAI 303 (709)
T ss_pred HhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 174 YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLI 253 (597)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (597)
+++.++...+.+..++..+..-...++.++.+.|++.|+++||+.+.|.++..+|++...+..+...+......+.....
T Consensus 304 ~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
T COG2274 304 PLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK 383 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77766666666665555555555566778999999999999999999999999999988776665555444444444444
Q ss_pred HHHHHHH-HHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy1502 254 DFLCLLY-LSTILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYE 329 (597)
Q Consensus 254 ~~~~~~~-~~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 329 (597)
.++..+. +++++++.... .++.|.+.++.+....+..|+..+...|.+++....+.+|+.++++.|+|.+.+..
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-- 461 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-- 461 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc--
Confidence 4443322 22222333222 34567777777777788899999999999999999999999999998887543221
Q ss_pred CCCCCCCCcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC
Q psy1502 330 DENEIWPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV 407 (597)
Q Consensus 330 ~~~~~~~~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~ 407 (597)
....++..|+|+|+||+|+|+.+ +++|+|+||+|+|||+|||||+||||||||+|+|+|+| |++|+|++||+|+.++
T Consensus 462 -~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 462 -LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred -cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12233457899999999999544 67999999999999999999999999999999999999 5789999999999999
Q ss_pred ChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 408 PLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++++|++||||+||++||+|||+|||++++ ++++|++++||+.|++||||+++ .||||.|||+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999975 68899999999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCch
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGF 557 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~ 557 (597)
||||++||+||||||||||||++||+.|+++|.+...++|+|+||||++++++||||+|||+|+|+| +.+|.
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~ 700 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGL 700 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 55888
Q ss_pred hHhhHhhh
Q psy1502 558 FFSKDLIE 565 (597)
Q Consensus 558 y~~l~~~~ 565 (597)
|..+|+++
T Consensus 701 y~~l~~~q 708 (709)
T COG2274 701 YARLYQQQ 708 (709)
T ss_pred HHHHHhcc
Confidence 88888654
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-96 Score=835.20 Aligned_cols=499 Identities=23% Similarity=0.332 Sum_probs=406.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc-cChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFST-NPSGRILNRFSKDMGAVDEVLPKAMLD 143 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~sG~l~~rit~D~~~i~~~~~~~~~~ 143 (597)
+.+.|+++.++..+..+++.+++.++++++..++|..+|+++++++.+|||+ .++|.+.+|+.+|...++..+...+..
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~ 788 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSL 788 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHH
Confidence 6677778888888899999999999999999999999999999999999994 334999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHH
Q psy1502 144 AAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223 (597)
Q Consensus 144 ~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~ 223 (597)
+++++..+++.+++.|+++|.++++++..+|++.+......+..............+......|++.+||||++|+.|++
T Consensus 789 vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~ 868 (1228)
T KOG0055|consen 789 VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEK 868 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Confidence 99999999999999999999999988888777665554444444444444444445567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHH-HHHHHHHHHHHHHHHHHH
Q psy1502 224 LVEEFDYHQDLHSSTWH-LFVYTNMGFAYLIDFLCLLYLSTILISFFFF---ADIGGKVGL-AVTQTMTLMGVVQWAMRQ 298 (597)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~i~~-~~~~~~~~~~~~~~~~~~ 298 (597)
+.+.|.+..+...+... +.......++....++.......+.++..+. ......+.. +.+..+. ...+......
T Consensus 869 ~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~t-a~~~~~~~s~ 947 (1228)
T KOG0055|consen 869 FMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFT-AMALGQASSY 947 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 99999988766443322 2211111111111111111111111111111 111122111 1111111 1223445566
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCC--ccceeeeEEEcCCcEEEEEcCC
Q psy1502 299 AAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRT 376 (597)
Q Consensus 299 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~--~vL~~isl~I~~G~~vaIVG~S 376 (597)
..++.++..|+.+++++++.+|..+.+.. ......+..|+|+|+||+|+||.+| +||+|+||+|++||++||||||
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCC
Confidence 67888999999999999998764332211 1111224579999999999998765 5999999999999999999999
Q ss_pred CCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcH
Q psy1502 377 GAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVEL 454 (597)
Q Consensus 377 GsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l 454 (597)
||||||++.||.|||+ ++|.|.|||+|++++++++||++||+|+|||.||++||||||.|| ++++++|+.+|||.|++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 9999999999999995 789999999999999999999999999999999999999999998 56899999999999999
Q ss_pred HHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 455 KDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 455 ~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
|+||.++ +||||.|||+|.+||||||||||||||++|||+||||||||||||+++|+.||++|++.+.+||+|+|||||
T Consensus 1106 H~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred HHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 534 HTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 534 sti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
||++|||.|+|+++|+|+| +++|.|++|++.+.
T Consensus 1186 STIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1186 STIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred hhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 9999999999999999999 78899999987543
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-94 Score=836.73 Aligned_cols=504 Identities=46% Similarity=0.732 Sum_probs=470.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHH
Q psy1502 61 STESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKA 140 (597)
Q Consensus 61 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~ 140 (597)
+...++++|.++.++..++..++++.+...+.+.+..|++++++++++.|++|||.+++|.|+||+++|++.++..++..
T Consensus 856 ~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~ 935 (1381)
T KOG0054|consen 856 STSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFT 935 (1381)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHH
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhch
Q psy1502 141 MLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA 220 (597)
Q Consensus 141 ~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~ 220 (597)
+..++..++.++++++++.+..|+++++++++.++++++.++|.+.++++++++..+++++.+++.|+++|+.|||||+.
T Consensus 936 ~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~ 1015 (1381)
T KOG0054|consen 936 LEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK 1015 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1502 221 AKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF--A-DIGGKVGLAVTQTMTLMGVVQWAMR 297 (597)
Q Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~i~~~~~~~~~~~~~~~~~~~ 297 (597)
+++|.+++....+.+.+.++.....++|++..+++++.+.+.+.++..+.. . ..+|.+|+.++|++++.+.+++.++
T Consensus 1016 ~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR 1095 (1381)
T KOG0054|consen 1016 EERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVR 1095 (1381)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999999999876665555544443 2 3468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEe-CCCCccceeeeEEEcCCcEEEEEcCC
Q psy1502 298 QAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRT 376 (597)
Q Consensus 298 ~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y-~~~~~vL~~isl~I~~G~~vaIVG~S 376 (597)
...++++.++|+||+.||.+.++|++...+...+++.||..|.|+|+|++.+| |+.++||+||||+|+|||||||||+|
T Consensus 1096 ~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRT 1175 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRT 1175 (1381)
T ss_pred HHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCC
Confidence 99999999999999999999887743332222367889999999999999999 66688999999999999999999999
Q ss_pred CCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHH
Q psy1502 377 GAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455 (597)
Q Consensus 377 GsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~ 455 (597)
|||||||++.|.|+.+ .+|+|.|||+||.++.+++||++++++||||.||+||+|.||+|.++++|+++|+|+++|++.
T Consensus 1176 GaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1176 GAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred CCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChH
Confidence 9999999999999975 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 456 DMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 456 ~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
++|+++ +|+|+.|.|+|.|+|-||||.+|+||||||+++||+|||||+++|++|+..||++|++.+++||||.||||++
T Consensus 1256 ~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1256 DVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccc
Confidence 999998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCEEEEEeCCeEEE---------ecCchhHhhHhh
Q psy1502 535 TIMDSDKVLVMDSGVAVV---------SSFGFFFSKDLI 564 (597)
Q Consensus 535 ti~~~D~Iivl~~G~Ive---------~~~g~y~~l~~~ 564 (597)
|+.+||||+|||+|+|+| ++++.|+++..+
T Consensus 1336 TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1336 TVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred hhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999 456677655543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-93 Score=801.90 Aligned_cols=546 Identities=17% Similarity=0.172 Sum_probs=429.9
Q ss_pred hhhHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 17 ATREEYRQFEIL----KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACM 92 (597)
Q Consensus 17 ~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (597)
++...||...++ ..+.+++.+..|.++..+++........ ......++..++++.++..++.+++.+.....+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 15 QQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556644433 3444556667777777888765422111 1111122233334444556677788888888999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 93 RCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLIL 172 (597)
Q Consensus 93 ~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~ 172 (597)
++..++|.++|++++++|+++|+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++.
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 173 LYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYL 252 (597)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (597)
+++.+++...+.+..++..+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...............
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666665555555555566778899999999999999999999999999888776655433322222222222
Q ss_pred HHHHHHHHHHHH-HHHHHHH--HhhhhHH----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy1502 253 IDFLCLLYLSTI-LISFFFF--ADIGGKV----GLA-----VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEP 320 (597)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~--~~~~g~i----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 320 (597)
..++..+...++ ++++... .++.|.+ +.+ +.+...+..|+..+...+..++.+.++++|+.++++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 332 (588)
T PRK11174 253 LEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPL 332 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 222222111111 1111111 1222321 111 123344567888888888899999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEc
Q psy1502 321 EGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400 (597)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~id 400 (597)
+...... .....+..++|+|+||+|.|++++++|+|+||+|+||+++|||||||||||||+++|+|+||++|+|++|
T Consensus 333 ~~~~~~~---~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~ 409 (588)
T PRK11174 333 AHPQQGE---KELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKIN 409 (588)
T ss_pred cccCCCc---cccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEEC
Confidence 3211110 0001112356999999998865678999999999999999999999999999999999999889999999
Q ss_pred ceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChh
Q psy1502 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVG 478 (597)
Q Consensus 401 g~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGG 478 (597)
|+|+++++.+++|++|+||||||+||+|||+|||+++ ++++|||+++||+.|++++||+.+ +||||.|||+|.+||||
T Consensus 410 g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGG 489 (588)
T PRK11174 410 GIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVG 489 (588)
T ss_pred CEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHH
Confidence 9999999999999999999999999999999999998 479999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE------
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV------ 552 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive------ 552 (597)
|||||||||||++||+||||||||||||++||+.|+++|.++.+++|+|+||||++++++||+|+||++|+|+|
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999998
Q ss_pred --ecCchhHhhHhhhcc
Q psy1502 553 --SSFGFFFSKDLIEGT 567 (597)
Q Consensus 553 --~~~g~y~~l~~~~~~ 567 (597)
+++|.|++++..+.+
T Consensus 570 L~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 570 LSQAGGLFATLLAHRQE 586 (588)
T ss_pred HHhcchHHHHHHHHhhc
Confidence 567888888875544
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-92 Score=790.69 Aligned_cols=536 Identities=27% Similarity=0.366 Sum_probs=438.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 21 EYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHK 100 (597)
Q Consensus 21 ~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~ 100 (597)
.+-...++..+.+++++..|.++..+++..... ......+...++++.++..++.++..+...+.+.++..++|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666778888888888888877611 111233344444555555666666677777788999999999
Q ss_pred HHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 101 KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS 180 (597)
Q Consensus 101 ~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~ 180 (597)
++|++++++|+++|+++++|++++|+++|++.++..+.+....+..+++.+++.+++++.++|.+++++++..+++.+..
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 169 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVL 169 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886666668899999999999999999988877766666655
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY 260 (597)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (597)
..+.++.++..+..+...+++.+.+.|.++|++++|+|+.++.+.++|++..+...+..................+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (567)
T COG1132 170 SLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLG 249 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554445555555556678899999999999999999999999999988776554432222222222222222222221
Q ss_pred HHHHH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q psy1502 261 LSTIL-ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWP 336 (597)
Q Consensus 261 ~~~~~-~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 336 (597)
..+++ ++.... .++.|.+.+++.+...+..++..+...+..++.+..+++|++++++.+++...... . ...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~--~~~ 324 (567)
T COG1132 250 TVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---P--LKD 324 (567)
T ss_pred HHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---C--CCC
Confidence 11111 111111 24567788888888889999999999999999999999999999987554222111 0 123
Q ss_pred CcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcC
Q psy1502 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~ 415 (597)
..++|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|||+ ++|+|++||+|+++++.++||++
T Consensus 325 ~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 325 TIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 45779999999999877789999999999999999999999999999999999996 58999999999999999999999
Q ss_pred cEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|++|||||+||+|||+|||++++ +++|||+++||+.|+++|||+++ +||||.|||+|.+||||||||||||||++|||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999985 59999999999999999999998 99999999999999999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||||||||+||++||+.|++++.++.++||+|+||||++|+++||+|+|||+|+|+| +++|.|+++|..+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999999999889999999999999999999999999999999 6689999999865
Q ss_pred c
Q psy1502 566 G 566 (597)
Q Consensus 566 ~ 566 (597)
+
T Consensus 565 ~ 565 (567)
T COG1132 565 G 565 (567)
T ss_pred h
Confidence 4
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-90 Score=840.60 Aligned_cols=514 Identities=37% Similarity=0.545 Sum_probs=433.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLD 143 (597)
Q Consensus 64 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~ 143 (597)
.+++.|+++.++..++.+++.++....+.+...++|.++|++++++|++||+++++|++++|+++|++.++..+...+..
T Consensus 954 ~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 954 FYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHH
Q psy1502 144 AAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKI 223 (597)
Q Consensus 144 ~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~ 223 (597)
++..++.+++.++++++++|...++++++.++++++..++.+..++.++.+...++++.+++.|+++|+++||+|+.+++
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~ 1113 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 1113 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHH
Confidence 99999999999999999998766666666555555566677777777777788889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHH
Q psy1502 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFA-------DIGGKVGLAVTQTMTLMGVVQWAM 296 (597)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~i~~~~~~~~~~~~~~~~~~ 296 (597)
+.+.+.+..+...+..........|+...+.++..+.+.+.....+... ...+.++.+++++..+...+.++.
T Consensus 1114 f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~ 1193 (1622)
T PLN03130 1114 MAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVL 1193 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666554444433344555555555443322211111111110 013456667777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcC
Q psy1502 297 RQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGR 375 (597)
Q Consensus 297 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~ 375 (597)
..+..++..+++++|+.++++.++|.+.......++..||..|.|+|+||+|+|++ .++||+|+||+|+|||+||||||
T Consensus 1194 ~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGr 1273 (1622)
T PLN03130 1194 RLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGR 1273 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECC
Confidence 88889999999999999999887664321111122335667789999999999954 46799999999999999999999
Q ss_pred CCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcH
Q psy1502 376 TGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVEL 454 (597)
Q Consensus 376 SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l 454 (597)
||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|++|||||+||+|||||||+++++++|+++++||+.|++
T Consensus 1274 SGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l 1353 (1622)
T PLN03130 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353 (1622)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCc
Confidence 99999999999999995 78999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 455 KDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 455 ~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
+|||+++ +||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..++||+|+||||+
T Consensus 1354 ~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL 1433 (1622)
T PLN03130 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1433 (1622)
T ss_pred HHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCCh
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCEEEEEeCCeEEE--------e-cCchhHhhHhhhcccchHHHHHHH
Q psy1502 534 HTIMDSDKVLVMDSGVAVV--------S-SFGFFFSKDLIEGTVSAKVLSSRK 577 (597)
Q Consensus 534 sti~~~D~Iivl~~G~Ive--------~-~~g~y~~l~~~~~~~~~~~~~~~~ 577 (597)
+|+++||||+|||+|+|+| + ++|.|++|++..+..+.+...+.+
T Consensus 1434 ~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a 1486 (1622)
T PLN03130 1434 NTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLV 1486 (1622)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHH
Confidence 9999999999999999999 3 369999999988776544433333
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-90 Score=843.83 Aligned_cols=502 Identities=39% Similarity=0.610 Sum_probs=439.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDA 144 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~ 144 (597)
++.+|+++.++..++.+++.++..+.+.+...++|.++|++++++|++||+++++|++++|+++|++.++..+...+..+
T Consensus 1007 ~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~ 1086 (1522)
T TIGR00957 1007 RLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMF 1086 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777778888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH
Q psy1502 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224 (597)
Q Consensus 145 i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~ 224 (597)
+..++.+++.++++++.+|++++++++++++++++.+++.+..++.++.+...++++.+++.|+++|+++||+||.++++
T Consensus 1087 ~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f 1166 (1522)
T TIGR00957 1087 MGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERF 1166 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHH
Confidence 99999999999999999999888877777777777888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 VEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF--ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEV 302 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 302 (597)
.+++.+..+...+..+.......|+...+.++..+.+.++....+.. .++.|.+++++.++..+..++..+...+..+
T Consensus 1167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~ 1246 (1522)
T TIGR00957 1167 IHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEM 1246 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888776666555455566666666655433222222111111 2467888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHH
Q psy1502 303 ENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKS 381 (597)
Q Consensus 303 ~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKS 381 (597)
+.+++|++|+.++++.+++.+.......++..||..|.|+|+||+|+|+++ ++||+||||+|+|||+||||||||||||
T Consensus 1247 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKS 1326 (1522)
T TIGR00957 1247 ETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKS 1326 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHH
Confidence 999999999999998776543111111233456777899999999999644 5799999999999999999999999999
Q ss_pred HHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHh
Q psy1502 382 SLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460 (597)
Q Consensus 382 TL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~ 460 (597)
||+++|+|+|+ ++|+|+|||+|++++++++||++|++|||||+||+|||||||++.++++|||+++|++.|++++||++
T Consensus 1327 TL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~ 1406 (1522)
T TIGR00957 1327 SLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSA 1406 (1522)
T ss_pred HHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhh
Confidence 99999999995 68999999999999999999999999999999999999999998778999999999999999999999
Q ss_pred c-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhc
Q psy1502 461 G-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 461 l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~ 539 (597)
+ +||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+|
T Consensus 1407 lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957 1407 LPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred CccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 540 DKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 540 D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
|||+|||+|+|+| +++|.|++|+++.+
T Consensus 1487 DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1487 TRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDAG 1521 (1522)
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999 55788998887643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=795.75 Aligned_cols=498 Identities=23% Similarity=0.326 Sum_probs=409.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
..+.+.++.+.++.++.+++...++.+.++|...++|.+.++.+++++.+|||.+.+|++.+++++|++.+++.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 34566667777777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..+.++++.+++.|+..|+++++++...|+..+....+.+...+....+....++..+.+.|++.++|||.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999999888887766655555555455555555555677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-------ADIGGKVGLAVTQTMTLMGVVQWA 295 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~i~~~~~~~~~~~~~~~~~ 295 (597)
.+.++|.+..+...+...+. ..+.+....+...+......+++++. ...+|.+...+..++.-...+.+.
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~---g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKK---GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99999999877654432211 11111111111111111111111111 112333222121122212233444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCC--ccceeeeEEEcCCcEEEEE
Q psy1502 296 MRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIV 373 (597)
Q Consensus 296 ~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~--~vL~~isl~I~~G~~vaIV 373 (597)
...+..+..+.+++.+|++.++..|..+.... .........|+|+|+||+|+||++| ++|+|+||+||+|++||||
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~--~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSK--GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccc--cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 55667778899999999999886554322111 1112223568999999999999876 6999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHH
Q psy1502 374 GRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQE 451 (597)
Q Consensus 374 G~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~ 451 (597)
|||||||||+++||.||| |++|+|+|||.|+++++.++||++||+|+|+|.||++||+|||.+|+ +++++++.+|||.
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ 465 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999 57899999999999999999999999999999999999999999985 8999999999999
Q ss_pred hcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEec
Q psy1502 452 VELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIA 530 (597)
Q Consensus 452 a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~Ia 530 (597)
|++++||..+ +||||++||+|..|||||||||||||||+|||+||||||||||||+++|+.||++|++.+++||+|+||
T Consensus 466 ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred ccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 531 HRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 531 Hrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||||++||+|+||++|+||| +.+|.|.+|++.+
T Consensus 546 HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ 588 (1228)
T ss_pred eehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHH
Confidence 9999999999999999999999 5569999999744
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-89 Score=831.94 Aligned_cols=510 Identities=37% Similarity=0.571 Sum_probs=427.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
..++..|+++.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.++..+...+.
T Consensus 950 ~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~ 1029 (1495)
T PLN03232 950 GFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMN 1029 (1495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHH
Confidence 44677788888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..++.+++.++++++++|...++++++.++++++..++.+..++.++.+...++++.+++.|+++|+++||+||.++
T Consensus 1030 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1030 MFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 99999888888888888888766655555555445555566666677777778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD-------IGGKVGLAVTQTMTLMGVVQWA 295 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~i~~~~~~~~~~~~~~~~~ 295 (597)
++.+++.+..+...+..........|+......+..+.+.+.....+.... ..+.++.++.++..+..++.++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 1189 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGV 1189 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 988888777665544433333334444444433322111111111111000 0233445566777778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEc
Q psy1502 296 MRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVG 374 (597)
Q Consensus 296 ~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG 374 (597)
...+..++.++++++|+.++++.++|.+.......++..||..|.|+|+||+|+|+ +.++||+|+||+|+|||+|||||
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG 1269 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVG 1269 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEEC
Confidence 99999999999999999999988766432111111233466678999999999995 44689999999999999999999
Q ss_pred CCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhc
Q psy1502 375 RTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE 453 (597)
Q Consensus 375 ~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~ 453 (597)
|||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|+||||||+||+|||||||+++++++|+|+++|++.|+
T Consensus 1270 ~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~ 1349 (1495)
T PLN03232 1270 RTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAH 1349 (1495)
T ss_pred CCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 999999999999999995 7899999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q psy1502 454 LKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532 (597)
Q Consensus 454 l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 532 (597)
++|||+++ +||||.|||+|.+|||||||||||||||+|+|+||||||||||||++||+.|+++|++..+++|+|+||||
T Consensus 1350 l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHR 1429 (1495)
T PLN03232 1350 IKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHR 1429 (1495)
T ss_pred CHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhcCEEEEEeCCeEEE--------ec-CchhHhhHhhhcccchHH
Q psy1502 533 LHTIMDSDKVLVMDSGVAVV--------SS-FGFFFSKDLIEGTVSAKV 572 (597)
Q Consensus 533 lsti~~~D~Iivl~~G~Ive--------~~-~g~y~~l~~~~~~~~~~~ 572 (597)
++|+++||+|+|||+|+|+| ++ +|.|++|++.++..+.+.
T Consensus 1430 l~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~ 1478 (1495)
T PLN03232 1430 LNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQY 1478 (1495)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhHH
Confidence 99999999999999999999 34 469999999887765544
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-88 Score=774.01 Aligned_cols=525 Identities=18% Similarity=0.217 Sum_probs=427.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+..++.+..|.++..++|..+.... ........+.++++.++..++.+++.+.....+.++..++|.++|+++++
T Consensus 145 ~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 221 (686)
T TIGR03797 145 GLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLR 221 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455677777777888887664321 11112223334444555567788888889999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|++||+++++|++++|++ |++.+++++...+...+.+++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 222 ~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 300 (686)
T TIGR03797 222 LPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQV 300 (686)
T ss_pred CCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 799999999988888888888888899999999999998777766665555555555544
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 267 (597)
+..+......++..+.+.|.++|+++||++|.|+++.++|++..++..+...+......+...+...+..+... +++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 380 (686)
T TIGR03797 301 RKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAA 380 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445566788999999999999999999999999999887765554443333333333333332222111 11222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.++..++..+..++..+...+..++.+..+++|+.++++.+++.+... ....+..+.|+|+
T Consensus 381 ~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-----~~~~~~~~~I~~~ 455 (686)
T TIGR03797 381 ISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-----TDPGKLSGAIEVD 455 (686)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-----CCCCCCCceEEEE
Confidence 2211 3456677777777778889999999999999999999999999988665432111 0111234679999
Q ss_pred eeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|+ +++++|+|+||+|+|||++||||+||||||||+++|+|+|+ ++|+|++||+|+++++++++|++|||||||
T Consensus 456 nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 456 RVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred EEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 9999995 45789999999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 423 PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
|+||+|||+|||+++++++++++++|++.++++++++.+ +||||.+||+|.+|||||||||+|||||+++|||||||||
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999998669999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
||+||++||+.|+++|+++ ++|+|+||||++++++||+|+||++|+|+| +++|.|++++..
T Consensus 616 TS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 616 TSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred ccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9999999999999999987 689999999999999999999999999998 456777777753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-88 Score=778.99 Aligned_cols=526 Identities=21% Similarity=0.259 Sum_probs=427.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.++..++.+..|.++..++|..+..... .....+...+++++++..++.+++.++..+.+.++..++|.++|+++++
T Consensus 165 ~~~~~~~~l~~p~~~~~iiD~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 241 (708)
T TIGR01193 165 AIIVTLISIAGSYYLQKIIDTYIPHKMM---GTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFE 241 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444566677787788888876643211 0111122233334445567788888888999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|+.||+++++|++++|++ |++.+.+++...+...+..++.++++++++++++|++++++++.+++.+++...+.+..+
T Consensus 242 l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 320 (708)
T TIGR01193 242 LPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFN 320 (708)
T ss_pred CCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 899999999888888888888888888999999999998887777766666666666666
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 267 (597)
+..+......++..+.+.|+++|+++||++|.|+++.++|++...+..+...+..........+..++..+. +.+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555566677889999999999999999999999999988776654443332222222222222222111 1122222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.++..++..+..|+..+...+..++.+..+++|+.++++.+++.+.... .....+..++|+|+
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~---~~~~~~~~~~I~~~ 477 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK---RTELNNLNGDIVIN 477 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc---ccCCCCCCCcEEEE
Confidence 2222 34567777777888888899999999999999999999999999987665322111 01112235689999
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|+| |++|+|++||+|+++++.++||++|+||||||
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred EEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 99999976678999999999999999999999999999999999999 47899999999999999999999999999999
Q ss_pred CCCCccHHhhcccC--CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 424 VLFSGTLRKNLDPF--EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 424 ~LF~gTI~eNI~~~--~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
+||+|||+|||+++ ++++++++++|++.++++|||+.+ +||||.|||+|.+|||||||||+||||++++|+||||||
T Consensus 558 ~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE 637 (708)
T TIGR01193 558 YIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637 (708)
T ss_pred eehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999999999997 468999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhH
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKD 562 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~ 562 (597)
|||+||++||+.|+++|.+. +++|+|+||||+++++.||+|++|++|+++| +++|.|++++
T Consensus 638 ~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~ 706 (708)
T TIGR01193 638 STSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706 (708)
T ss_pred ccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHh
Confidence 99999999999999999985 7899999999999999999999999999998 3455666655
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-88 Score=774.78 Aligned_cols=516 Identities=24% Similarity=0.305 Sum_probs=423.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (597)
+..+.+++++..|.++..++|......... .....++.++++.++..++.+++.+...+++.++..++|.++|++++
T Consensus 169 ~~~~~~l~~~~~p~~~~~iid~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll 245 (711)
T TIGR00958 169 FLTLSSLGEMFIPFYTGRVIDTLGGDKGPP---ALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888888888888766432110 11222344444555566777888888889999999999999999999
Q ss_pred cCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 108 ~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
++|++||++.++|++++|+++|++.+++.+...+..++.+++.++++++++++++|.+++++++.+++.+++...+.+..
T Consensus 246 ~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~ 325 (711)
T TIGR00958 246 RQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325 (711)
T ss_pred cCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888777777667777777666
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL-STILI 266 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 266 (597)
++..+......++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+.............++..+.. .++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 405 (711)
T TIGR00958 326 QLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY 405 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555566778899999999999999999999999999988776554433221111111111112111111 11111
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.... .++.|.+.+++.+...+..++..+...+.+++++.++.+|+.++++.+++.+.... ..+.+..+.|+|
T Consensus 406 g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~----~~~~~~~~~I~~ 481 (711)
T TIGR00958 406 GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT----LAPLNLEGLIEF 481 (711)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC----CCCCCCCCeEEE
Confidence 22111 34567777888888888999999999999999999999999999987654321111 111123567999
Q ss_pred EeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 344 QNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 344 ~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+|||
T Consensus 482 ~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 561 (711)
T TIGR00958 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561 (711)
T ss_pred EEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence 999999975 3579999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|||++|+|||||||+++ ++++||++++|++.+++++|++++ +||||.+||+|.+||||||||||||||+++||+||||
T Consensus 562 Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILIL 641 (711)
T TIGR00958 562 QEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641 (711)
T ss_pred cCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999997 468899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||||+++|+.|++ ....+++|+|+||||++++++||+|+|||+|+|+|
T Consensus 642 DEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 642 DEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred EccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999998 33457899999999999999999999999999998
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-87 Score=754.21 Aligned_cols=532 Identities=21% Similarity=0.306 Sum_probs=424.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
++..+.+++.+..|.++..+++.....+.. .......+++.++++.++..++.+++.+....++.++..++|.++|+++
T Consensus 30 ~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (592)
T PRK10790 30 LMLWVAAAAEVSGPLLISYFIDNMVAKGNL-PLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888888888876543211 1000011112233333344556677777888889999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|+++|++.++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++.+++.+++...+.+.
T Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~ 188 (592)
T PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188 (592)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877666555544444444444
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMG-FAYLIDFLCLLYLSTI- 264 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 264 (597)
.+...+......++..+.+.|.++|+++||+||.++++.++|.+..+...+........... ......++..+...++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445566788999999999999999999999999988766544432222111111 1111222221111111
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 265 LISFFFF--ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 265 ~~~~~~~--~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++++... .++.|.+.+++.+...+..|+..+...+..++.+..+++|+.++++.++++... . ...+..++|+
T Consensus 269 ~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~-----~~~~~~~~i~ 342 (592)
T PRK10790 269 MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D-----DRPLQSGRID 342 (592)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C-----ccCCCCCeEE
Confidence 1111111 234566666777777888999999999999999999999999998765432111 1 1112245799
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+||+|+|++++++|+|+||+|++||++||||+||||||||+++|+|+|+ ++|+|.+||+|+++++++++|++|+||||
T Consensus 343 ~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q 422 (592)
T PRK10790 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422 (592)
T ss_pred EEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence 99999999866779999999999999999999999999999999999995 68999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
||+||+|||+|||+++++++|+++++|++.++++++++.+ +||||.+||+|.+|||||||||+|||||+++||||||||
T Consensus 423 ~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE 502 (592)
T PRK10790 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502 (592)
T ss_pred CCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999999999998889999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|||+||++||+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|++ ++++.|+++++.+
T Consensus 503 pts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 503 ATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999988999999999999999999999999999998 5678888888644
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-88 Score=813.30 Aligned_cols=527 Identities=20% Similarity=0.258 Sum_probs=405.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q psy1502 34 FVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAF 113 (597)
Q Consensus 34 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 113 (597)
.+..+.|.++..+++......... .....+.+++++++++..++.+++.++..+++.++..++|.++|++++++|++|
T Consensus 839 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~ 916 (1466)
T PTZ00265 839 GLYPVFALLYAKYVSTLFDFANLE--ANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISF 916 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344455555667666544321000 011233455556666677788889999999999999999999999999999999
Q ss_pred hcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy1502 114 FST--NPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS-- 189 (597)
Q Consensus 114 f~~--~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~-- 189 (597)
|++ +++|++++|+++|++.++.++...+..++..++.++++++++++++|.+++++++++++... .+.+..+.
T Consensus 917 fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~ 993 (1466)
T PTZ00265 917 FDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMR---VFAIRARLTA 993 (1466)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 986 88999999999999999999999999999999999999999999999988776654433222 22221111
Q ss_pred ---HHHH-------------HHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 190 ---LKYL-------------EGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLI 253 (597)
Q Consensus 190 ---~~~~-------------~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (597)
..+. .....+.....++|+++|+++||+|+.|+++.++|++..+...+...........+..+.
T Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1466)
T PTZ00265 994 NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFS 1073 (1466)
T ss_pred HHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1101 111233457889999999999999999999999999887765443332222112122222
Q ss_pred HHHHHHHH-HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy1502 254 DFLCLLYL-STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYE 329 (597)
Q Consensus 254 ~~~~~~~~-~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 329 (597)
..+..+.. .+++++.... .++.|.+..++.++.....++..+...+..++++.++++|++++++.+++.+......
T Consensus 1074 ~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~ 1153 (1466)
T PTZ00265 1074 QSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGG 1153 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcc
Confidence 22221111 1112222221 2334544444433333334556677788899999999999999998755322111100
Q ss_pred CCC-CCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC-------------
Q psy1502 330 DEN-EIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------------- 393 (597)
Q Consensus 330 ~~~-~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------------- 393 (597)
... ...+..+.|+|+||+|+||++ .+||+|+||+|++|+++|||||||||||||++||+|||++
T Consensus 1154 ~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1154 IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred cccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 000 011234689999999999753 4799999999999999999999999999999999999964
Q ss_pred ------------------------------------------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 394 ------------------------------------------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 394 ------------------------------------------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+|+|++||+|+++++.++||++||||||||+||+||||
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIr 1313 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIY 1313 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHH
Confidence 89999999999999999999999999999999999999
Q ss_pred hhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 432 KNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 432 eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
|||+++ +++++|++++||+.|+++|||..+ +||||.|||+|.+|||||||||||||||+|||+||||||||||||++|
T Consensus 1314 eNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 999998 579999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeC----CeEE-E--------e-cCchhHhhHhhh
Q psy1502 510 DLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDS----GVAV-V--------S-SFGFFFSKDLIE 565 (597)
Q Consensus 510 e~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~----G~Iv-e--------~-~~g~y~~l~~~~ 565 (597)
|+.|+++|.+.. +++|+|+||||++++++||+|+||++ |+++ | + ++|.|++++..+
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999999984 68999999999999999999999999 9965 5 4 478898888643
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-87 Score=771.32 Aligned_cols=527 Identities=21% Similarity=0.263 Sum_probs=426.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
++..++.+..|.++..++|..+..+.. .....+.+.++++.++..++.+++.++....+.++..++|.++|++++++
T Consensus 164 ~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 240 (710)
T TIGR03796 164 LLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRL 240 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444556677787788888876643311 01112233344444555677888888999999999999999999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|+++|+++++|++++|+++| +.+++++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..++
T Consensus 241 ~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 319 (710)
T TIGR03796 241 PVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVD 319 (710)
T ss_pred CHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 68999999999999999999999999999999999988877777666666666665555
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 268 (597)
..+......++..+.+.|.++|+++||++|.|+.+.++|++...+..+...+......+...+...+..+... +++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444555566788999999999999999999999999998877665544333322222222222222222111 112222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC--CCCCCC-CCCcccEE
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNY--EDENEI-WPVLGKIE 342 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~I~ 342 (597)
+.. .++.|.+.++..++..+..++..+...+..++.+..+++|+.++++.+++....... ...... .+..+.|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 221 345677777777888888999999999999999999999999999876553221100 000011 22356899
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+|+|++ .+++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+|||
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 559 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe
Confidence 9999999974 4689999999999999999999999999999999999994 7899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|||+||+|||||||++++ +++++++++|++.+++++|+.++ +||||.+||+|.+|||||||||+|||||+++|+||||
T Consensus 560 Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred cCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999874 68999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhH
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKD 562 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~ 562 (597)
||||||||++||+.|.+.|.+ .++|+|+||||++++++||+|+|||+|+|+| +++|.|++++
T Consensus 640 DEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred ECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 999999999999999999987 4899999999999999999999999999998 3556666665
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-87 Score=813.96 Aligned_cols=506 Identities=34% Similarity=0.567 Sum_probs=428.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
..++.+|+++.++..+..+++.+..+....+...++|.++|++++++|+.||+++++|++++|+++|++.++..+...+.
T Consensus 998 ~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~ 1077 (1560)
T PTZ00243 998 ATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYL 1077 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566666666666666666666667777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..++.+++.++++++.+|.++++++++.++++.+..++.+..++.++......+++.+++.|+++|+++||+||.++
T Consensus 1078 ~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1078 YLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 99999999999999999999977776666666666677778888888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF------ADIGGKVGLAVTQTMTLMGVVQWAM 296 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~i~~~~~~~~~~~~~~~~~~ 296 (597)
++.++|.+..+...+..........|......++..+...+++++++.. ....|.++++++++..+..++.++.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888776665554444566666665555433222222111111 1245667777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCC------------------------CCCCCC---CCCCCcccEEEEeeEEE
Q psy1502 297 RQAAEVENHMISVKRLVEYTKLEPEGNLSP------------------------NYEDEN---EIWPVLGKIEFQNTNVR 349 (597)
Q Consensus 297 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~------------------------~~~~~~---~~~~~~~~I~f~nVsf~ 349 (597)
..+..++.++.+++|+.++++..++++.+. ....++ +.++..|.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 999999999999999999986432211000 000011 11234578999999999
Q ss_pred eCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 350 YLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 350 Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
|+++ ++||+||||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|+||||||+||+
T Consensus 1318 Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred eCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 9654 569999999999999999999999999999999999995 68999999999999999999999999999999999
Q ss_pred ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC-CCEEEeecCCCCC
Q psy1502 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN-NVILVLDEATANV 505 (597)
Q Consensus 428 gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~-p~ILILDEaTSaL 505 (597)
|||||||+++++++|+|+++||+.|++++||.++ +||||.|||+|.||||||||||||||||+++ |+|||||||||+|
T Consensus 1398 gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1398 GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 9999999998889999999999999999999998 9999999999999999999999999999995 8999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------e-cCchhHhhHhhhccc
Q psy1502 506 DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------S-SFGFFFSKDLIEGTV 568 (597)
Q Consensus 506 D~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~-~~g~y~~l~~~~~~~ 568 (597)
|++||+.|+++|++.++++|+|+||||++|+++||+|+|||+|+|+| + ++|.|++|++..+..
T Consensus 1478 D~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999999 3 478999999877653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-87 Score=814.11 Aligned_cols=506 Identities=32% Similarity=0.578 Sum_probs=438.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 67 GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQ 146 (597)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~ 146 (597)
++|+++.++..++.+++.++..+.+.+...++|.++++++++.|++||+++++|++++|+++|++.++..+...+..++.
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~ 1008 (1490)
T TIGR01271 929 YIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQ 1008 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455677788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHH
Q psy1502 147 GVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVE 226 (597)
Q Consensus 147 ~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~ 226 (597)
.++.+++.++++++++|++++++++++++++++..++.+..++.++.+...++++.+++.|+++|+.+||+||.++++.+
T Consensus 1009 ~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~ 1088 (1490)
T TIGR01271 1009 LTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFET 1088 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHH
Confidence 99999999999999999988877777666777777788777888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 227 EFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENH 305 (597)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (597)
+|.+..+...+.+........|+.....++......+++++.+.. ....|.++.+++++..+..++.++...+..+...
T Consensus 1089 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1089 LFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766555554555556666666554432222222221111 2345667788888888888899999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCC--------------CCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEE
Q psy1502 306 MISVKRLVEYTKLEPEGNLSPNY--------------EDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKI 370 (597)
Q Consensus 306 ~~s~~ri~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~v 370 (597)
+.+++|+.++++.+++....... ..++..||..|.|+|+||+|+|+. .+++|+|+||+|+|||+|
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Gekv 1248 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRV 1248 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEE
Confidence 99999999999876653211100 012234677789999999999964 578999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHH
Q psy1502 371 GIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQ 450 (597)
Q Consensus 371 aIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~ 450 (597)
||||+||||||||+++|+|+|+++|+|+|||+|+++++++++|++|+||||||+||+|||||||+++.+++|+++++|++
T Consensus 1249 aIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~ 1328 (1490)
T TIGR01271 1249 GLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAE 1328 (1490)
T ss_pred EEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999999999988899999999999
Q ss_pred HhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Q psy1502 451 EVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTI 529 (597)
Q Consensus 451 ~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~I 529 (597)
.++++++|.++ +||||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+|
T Consensus 1329 ~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I 1408 (1490)
T TIGR01271 1329 EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408 (1490)
T ss_pred HCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcccchHH
Q psy1502 530 AHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGTVSAKV 572 (597)
Q Consensus 530 aHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~~~~~~ 572 (597)
|||++++.+||+|+||++|+|+| +++|.|++|+++.++.....
T Consensus 1409 aHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~~~~~ 1459 (1490)
T TIGR01271 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFP 1459 (1490)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChhcccc
Confidence 99999999999999999999999 56899999998776655543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-90 Score=706.99 Aligned_cols=522 Identities=21% Similarity=0.277 Sum_probs=410.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGL------FVAGISRSTAFYSACMRCSKGIHKKM 102 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~~lr~~l 102 (597)
....-++.+..|.+...+++.+..+..+ ....++.+.++.++. .+++-+|++++..+.+-..+++-.++
T Consensus 224 l~i~rli~~~~pi~~k~iv~~ltap~~~-----~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTAPDTF-----QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcCcchh-----hHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence 3334455666666666777665532211 122234444443322 34556666666667888889999999
Q ss_pred HHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy1502 103 FEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSL-SVNPLFSIPVLILLYLFWRLSK 181 (597)
Q Consensus 103 ~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~-~~~~~l~l~~~~~~~~~~~~~~ 181 (597)
|+|+..+++.||-++.+|+++.-++...+.+. +......++...++.+...++..+ .+|||+++++.+...++.....
T Consensus 299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheee
Confidence 99999999999999999999999988887776 666677777777776666665444 4899998877766655443322
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL 261 (597)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (597)
.......+.++.-..+..+-.+.-.+++-+.+|||-||+|+++.++|.++...+....++....... ++......+
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnf----LN~~Qn~Ii 453 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNF----LNIVQNGII 453 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhh
Confidence 1111111111111111222334667899999999999999999999999888776654443322222 222221111
Q ss_pred HHHHHHH-HH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q psy1502 262 STILISF-FF-------FADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENE 333 (597)
Q Consensus 262 ~~~~~~~-~~-------~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 333 (597)
++-++++ ++ .....|+.+.+.+|.+++..|+++....+..+|++...+++++++++.++|....+. .++
T Consensus 454 ~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~---a~p 530 (790)
T KOG0056|consen 454 GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG---APP 530 (790)
T ss_pred hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC---CCC
Confidence 1111111 11 034678888999999999999999999999999999999999999987665432222 122
Q ss_pred CCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHH
Q psy1502 334 IWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 334 ~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~l 412 (597)
.....|.|+|+||+|+|+.++|+|+||||+++||+++|+|||||+||||++++|.|||+ .+|+|.|||+||+.+..+++
T Consensus 531 l~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred ccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 22357899999999999888999999999999999999999999999999999999997 78999999999999999999
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|++||+||||..|||+||.+||.+++ .+++||+.+|++.|++||-|.+. +||+|+|||+|-+||||+|||+||||+++
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999999999975 79999999999999999999997 99999999999999999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE---------ecCchhHhh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---------SSFGFFFSK 561 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---------~~~g~y~~l 561 (597)
|+|.|++|||||||||..||+.||.+|.+++++||.|+|||||||+.+||.|+|+++|+|+| ...|.|++|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 448999999
Q ss_pred Hh
Q psy1502 562 DL 563 (597)
Q Consensus 562 ~~ 563 (597)
|+
T Consensus 771 Wq 772 (790)
T KOG0056|consen 771 WQ 772 (790)
T ss_pred HH
Confidence 96
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-86 Score=744.13 Aligned_cols=532 Identities=20% Similarity=0.201 Sum_probs=417.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFH-LLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~-~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
...+.+++.+..|.++..+++.......... .......+..+.++.++..++.++..+.....+.++..++|.++|+|+
T Consensus 24 ~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l 103 (574)
T PRK11160 24 LAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKL 103 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666667667777775542211000 000000112233334455667777778888899999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFW-RLSKAYLR 185 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~-~~~~~~~~ 185 (597)
+++|+++|++.++|++++|+++|++.++.++.+.+.+++.+++.++++++++++++|.+++++++++++.. ++...+.+
T Consensus 104 ~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 183 (574)
T PRK11160 104 LPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYR 183 (574)
T ss_pred hccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987765554433 23344444
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy1502 186 TSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI- 264 (597)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 264 (597)
..+...+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...+.............++..+...++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 263 (574)
T PRK11160 184 LGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLML 263 (574)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566778899999999999999999999999999998877655443333222222222222222211111
Q ss_pred HHHHHHH--HhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccE
Q psy1502 265 LISFFFF--ADIGGKVGLAVTQTM-TLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341 (597)
Q Consensus 265 ~~~~~~~--~~~~g~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 341 (597)
.++.... ..+.|.+.+++.+.. ....++..+...+..++.+..+++|+.++++.+++.+.+.. .. ..+..+.|
T Consensus 264 ~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~--~~--~~~~~~~i 339 (574)
T PRK11160 264 WLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTT--ST--AAADQVSL 339 (574)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc--cC--CCCCCCeE
Confidence 1111111 123344444444432 23456667777788899999999999999987654221111 01 11234679
Q ss_pred EEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 342 ~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+||
T Consensus 340 ~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 340 TLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence 999999999753 579999999999999999999999999999999999995 789999999999999999999999999
Q ss_pred eCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 420 PQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
||||+||++||+|||+++. +++++++++|++.+++++|++.++||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ilil 499 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLL 499 (574)
T ss_pred cccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999874 689999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
|||||+||++||+.|+++|.+..+++|+|+||||+++++.||+|++|++|+++| +++|.|+++|+
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 999999999999999999999988999999999999999999999999999998 56788888775
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-86 Score=760.77 Aligned_cols=527 Identities=22% Similarity=0.246 Sum_probs=428.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
++..+.+++.+..|.++..++|..+..... .....+.+.++++.++..++.+++.++..+.+.++..++|.++|+|+
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 230 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERV 230 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667788888888888876543211 01111222333334455677888888999999999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|+.| +++++|++++|+ +|++.+++++...+...+..++.++++++++++++|++++++++.+++.+++...+.+.
T Consensus 231 l~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~ 308 (694)
T TIGR03375 231 LGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRP 308 (694)
T ss_pred hCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 789999999999 79999999999888888888888888899999999999988877777666666666666
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTIL 265 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 265 (597)
.++..+......++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+..........+...+..+. +++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 388 (694)
T TIGR03375 309 LSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVV 388 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556677889999999999999999999999999998877665544333222222222222222111 11112
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 266 ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 266 ~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++.... .++.|.+.+++.+...+..++..+...+..++.+..+++|+.++++.+++.+.... .....+..+.|+
T Consensus 389 ~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~---~~~~~~~~~~I~ 465 (694)
T TIGR03375 389 VGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR---FLHRPRLQGEIE 465 (694)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---CCCCCCccceEE
Confidence 222221 34567777777888888899999999999999999999999999987665322111 011112346799
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+|+|++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+ ++|+|.+||+|+++++.++||++|+|||
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~ 545 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC
Confidence 9999999974 4679999999999999999999999999999999999995 7899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|||++|+|||+|||++++ +++++++++|++.++++||++.+ +||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 546 Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred CChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999975 58999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEEecCchhHhhHh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive~~~g~y~~l~~ 563 (597)
|||||+||++||+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|+| .|.+.++.+
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e--~G~~~eLl~ 688 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVA--DGPKDQVLE 688 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEe--eCCHHHHHH
Confidence 999999999999999999999989999999999999999999999999999998 444555543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-86 Score=744.90 Aligned_cols=488 Identities=23% Similarity=0.324 Sum_probs=411.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 72 LIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQV 151 (597)
Q Consensus 72 ~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~ 151 (597)
+.++..++.+++.++....+.++..++|.++|+++++.|+++|++.++|++++|+++|++.+++.+...+..++..++.+
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHH
Q psy1502 152 SGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYH 231 (597)
Q Consensus 152 i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~ 231 (597)
+++++++++++|++++++++.+++.+++...+.+..++..+.......++.+.+.|.++|+++||+||.++++.++|++.
T Consensus 154 ~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~ 233 (582)
T PRK11176 154 IGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV 233 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHH
Confidence 99999999999999888777766666666666665555555555566778899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 232 QDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMI 307 (597)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (597)
.+...+...+......+......++..+...++ .++.... .++.|.+.++..++..+..++..+...+..++.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 313 (582)
T PRK11176 234 SNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877655443333222322333333322222111 1111111 345677777777777888899999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHH
Q psy1502 308 SVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAA 386 (597)
Q Consensus 308 s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L 386 (597)
+.+|+.++++.+++.+.... ...+..++|+|+||+|+|++ .+++|+|+||+|++||++||||+||||||||+++
T Consensus 314 ~~~ri~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~l 388 (582)
T PRK11176 314 ACQTLFAILDLEQEKDEGKR-----VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred HHHHHHHHhcCCCcCCCCCc-----CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 99999999876544221111 11123457999999999975 4689999999999999999999999999999999
Q ss_pred Hhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-C
Q psy1502 387 IFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-A 462 (597)
Q Consensus 387 L~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~ 462 (597)
|+|+|+ ++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++++ +++|+++++|++.+++++|++++ +
T Consensus 389 l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~ 468 (582)
T PRK11176 389 LTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468 (582)
T ss_pred HHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccc
Confidence 999995 6899999999999999999999999999999999999999999863 47999999999999999999998 9
Q ss_pred CCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEE
Q psy1502 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV 542 (597)
Q Consensus 463 GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~I 542 (597)
||||.+||+|.+|||||||||+|||||+++|+||||||||||||++||+.+.++|.++.+++|+|+||||+++++.||+|
T Consensus 469 Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~I 548 (582)
T PRK11176 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEI 548 (582)
T ss_pred ccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 543 LVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 543 ivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
++|++|+|+| ++++.|++++..
T Consensus 549 i~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 549 LVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred EEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 9999999998 556788888763
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-86 Score=737.00 Aligned_cols=499 Identities=19% Similarity=0.208 Sum_probs=394.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGI--YFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (597)
+..+.+++.+..|.++..+++....... ....+... ++++.++..++.++..++....+.++..++|.++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 95 (529)
T TIGR02868 21 LGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDR 95 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777787776543211 01111111 1123344456677777788888999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS-KAYL 184 (597)
Q Consensus 106 ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~-~~~~ 184 (597)
++++|++||++.++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++.++++.++. ....
T Consensus 96 ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 175 (529)
T TIGR02868 96 LARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSL 175 (529)
T ss_pred hhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887776655443333 3333
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-T 263 (597)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (597)
+..+...+......+++.+.+.|.++|+++||+||.|+++.++|++..+...+...+.............++..+... +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (529)
T TIGR02868 176 RAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGA 255 (529)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444557788999999999999999999999999999887765554333322222222222222211111 1
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccc
Q psy1502 264 ILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGK 340 (597)
Q Consensus 264 ~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (597)
+.++.... .++.|.+.+++.+...+..++..+...+..++.+.++.+|+.++++.+++.+..... .+....+..++
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 334 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVP-AAGALGLGKPT 334 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCC-CCcccCCCCce
Confidence 11122111 234566667777777788888888888999999999999999998866542211110 01111123457
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+ ++|+|++||+|++++ .++||++|+||
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V 413 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVF 413 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEE
Confidence 9999999999866679999999999999999999999999999999999995 789999999999999 99999999999
Q ss_pred eCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||||+||+|||+|||+++ ++++||++++|++.|+++|||+++ +||||.|||+|.+||||||||||||||+++||||||
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999997 468999999999999999999998 999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
|||||||||++||+.|+++|.+..+++|+|+||||+
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999998999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-86 Score=699.88 Aligned_cols=531 Identities=20% Similarity=0.240 Sum_probs=432.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1502 31 DTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSP 110 (597)
Q Consensus 31 ~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 110 (597)
+.++.-+..-.++...++..+..+. ......+++.++++.++..++.+.+..+.+..+.++...+|..+++++.+++
T Consensus 11 l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~g 87 (559)
T COG4988 11 LSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLG 87 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444444456677777776542 1122334455555566667888888889999999999999999999999999
Q ss_pred chhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 111 LAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSL 190 (597)
Q Consensus 111 ~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (597)
+.+-.+.++|++.+.++..+++++..+..++++.+...+.++.+++.++++||.-++++++.+|+..+++.......+..
T Consensus 88 p~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~ 167 (559)
T COG4988 88 PAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDA 167 (559)
T ss_pred hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999887776665554433333333333333
Q ss_pred HHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 191 KYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFF 270 (597)
Q Consensus 191 ~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (597)
.+..-.....+.+++.|.++|+.|+|+||..++..++..+..+++++...............++++..+.++++++...+
T Consensus 168 s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~ 247 (559)
T COG4988 168 SEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGF 247 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445667899999999999999999999999999998888887766666665555667777766655555544433
Q ss_pred HHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEe
Q psy1502 271 FADIGGKVGLAVTQTM-----TLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345 (597)
Q Consensus 271 ~~~~~g~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~n 345 (597)
.....|.+.++..++. -++.|+..+...+..-..+.++.+.++.+++.+.+...... .....+....+|+++|
T Consensus 248 ~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~ 325 (559)
T COG4988 248 RLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLEN 325 (559)
T ss_pred HHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecc
Confidence 2222144444333222 24556666667777777788899999998886654322111 1111122233466679
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
++|.||+++++++|+||++++|+++||||+||||||||+++|+||.+ ++|+|.+||+|+++++.++||+++++|||+|+
T Consensus 326 l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~ 405 (559)
T COG4988 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405 (559)
T ss_pred eEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc
Confidence 99999988899999999999999999999999999999999999985 89999999999999999999999999999999
Q ss_pred CCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC
Q psy1502 425 LFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 425 LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS 503 (597)
||+|||||||++++ +++||++++|++.+++.||++.++|+||.+||+|.+|||||+||+|+||||+++++++|||||||
T Consensus 406 lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA 485 (559)
T COG4988 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485 (559)
T ss_pred cccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 99999999999975 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 504 aLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
+||.|||+.|+++|.++.+++|+|+||||+..+++||+|+|||+|+++| +++|.|++|+.++.
T Consensus 486 ~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~ 556 (559)
T COG4988 486 HLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556 (559)
T ss_pred CCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 77889999987653
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-86 Score=692.19 Aligned_cols=528 Identities=20% Similarity=0.248 Sum_probs=409.5
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q psy1502 34 FVEMYGRSTFFKIVNNTINQ-HHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLA 112 (597)
Q Consensus 34 ~~~~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 112 (597)
++++..|.++..+++..-.. ..+..+......+..|+++-++..+++.++..++.++.+++.++.-.++|+++++++++
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 57777787777777655311 11111222345577788888888999999999999999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 113 FFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVS-LSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLK 191 (597)
Q Consensus 113 ~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
+|.+..+|++.+.+.+....|..++.-.+..++..++-+......+ .-..+..+++++.....+..+......+..+.+
T Consensus 124 ~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR 203 (591)
T KOG0057|consen 124 FFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFR 203 (591)
T ss_pred hhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHH
Confidence 9999999999999999999999888877777777665544444332 234555555444443333322222222222333
Q ss_pred HHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 192 YLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-SFFF 270 (597)
Q Consensus 192 ~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 270 (597)
+.-+.+.......+.|++.+..+||.||.|+++.++|+....++.++..+.........+....+.......+++ +...
T Consensus 204 ~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~g 283 (591)
T KOG0057|consen 204 KAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNG 283 (591)
T ss_pred HHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344455667899999999999999999999999999887765544333333222233333332222221111 1111
Q ss_pred H---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeE
Q psy1502 271 F---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTN 347 (597)
Q Consensus 271 ~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVs 347 (597)
. .+..|.+.....+..++..++..+...+..+.++..-+...+...+.+.. ... .+.+.....++|+|+||+
T Consensus 284 i~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~--i~~---~~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 284 IAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED--IQE---AALPIELFGGSIEFDDVH 358 (591)
T ss_pred hhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh--hhh---ccCCcccCCCcEEEEeeE
Confidence 1 33456666767777777778887777777777777666655443221111 100 111122345789999999
Q ss_pred EEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 348 f~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
|+|+.++++|+++||+||+||+|||||+|||||||++++|+||++++|+|+|||+|+++++++++|+.|||||||..|||
T Consensus 359 f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn 438 (591)
T KOG0057|consen 359 FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN 438 (591)
T ss_pred EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccc
Confidence 99987778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCC
Q psy1502 428 GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505 (597)
Q Consensus 428 gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 505 (597)
+||.+||.+|+ ++++||+.++||++++||-|..+ +||+|.|||+|..||||||||++||||++|||||++||||||+|
T Consensus 439 dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~L 518 (591)
T KOG0057|consen 439 DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL 518 (591)
T ss_pred hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccccc
Confidence 99999999985 79999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 506 DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 506 D~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
|.+||+.+.+.+.+...+||+|+|+||++++++||+|++||+|+++| ++++.|.++|.++.
T Consensus 519 D~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 519 DSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999 66778888887553
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-85 Score=746.22 Aligned_cols=528 Identities=22% Similarity=0.265 Sum_probs=428.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+..++.+..|.++..++|..+.... . .....+.+.++++.++..++.+++.++....+.++..++|.++|+++++
T Consensus 148 s~~~~ll~l~~p~~~~~iid~v~~~~~-~--~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 224 (694)
T TIGR01846 148 SLALQLFALVTPLLFQVVIDKVLVHRG-L--STLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLG 224 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455667777777888887664321 1 1112223334444455567788888999999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|+.||+++++|++++|+ +|++.+++++...+.+++..++.+++.++++++++|++++++++.++++.++...+.+..+
T Consensus 225 l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~ 303 (694)
T TIGR01846 225 LPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILR 303 (694)
T ss_pred CCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 6999999999988888888888888888899999999998877766666655555555444
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST-ILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 267 (597)
+..+......++..+.+.|.++|+++||++|.|+++.++|++..++..+...+......+......++..+...+ +.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 383 (694)
T TIGR01846 304 KRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFG 383 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 443334445567789999999999999999999999999998877665544333322222233333332222211 2222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.... .++.|.+.++..++..+..|+..+...+..++.+..+++|+.++++.+++.+.... .......+.|+|+
T Consensus 384 ~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~----~~~~~~~~~i~~~ 459 (694)
T TIGR01846 384 AHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGL----AALPELRGAITFE 459 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC----CCCCCCCCeEEEE
Confidence 2221 34567777777777888899999999999999999999999999987655321110 0111234679999
Q ss_pred eeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+|||||
T Consensus 460 ~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 460 NIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 99999964 467999999999999999999999999999999999999 5789999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 423 PVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
|++|++||+|||++++ +++++++++||+.++++++++.+ +||||.+||+|.+|||||||||+||||++++|+||||||
T Consensus 540 ~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE 619 (694)
T TIGR01846 540 NVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE 619 (694)
T ss_pred CeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999999999999864 68999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
|||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|++++..
T Consensus 620 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 691 (694)
T TIGR01846 620 ATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691 (694)
T ss_pred CCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence 9999999999999999999988999999999999999999999999999998 467788888763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-84 Score=726.20 Aligned_cols=534 Identities=21% Similarity=0.262 Sum_probs=421.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
.+.+++.+..|.++..++|...... .....++.++++.++..+..++......+...++..+++.++|++++++
T Consensus 29 i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 29 VLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445667777777778887654321 1111222233333333333444444445555666667778999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|+.+|++.++|++++|+++|++++.+.+...+..++..++.+++.++++++++|++++++++++++.+++...+.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888888888889999999999888777777666666666666555
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTILISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 268 (597)
..+......+++.+.+.|.++|+++||+||.++.+.++|.+..+...+..........+......++..+. +.+++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556677889999999999999999999999999988877655443322222221222222221111 11112222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEe
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~n 345 (597)
+.. .++.|.+.++..++..+..++..+...+..+..+..+++|+.++++.+++.+.... .....+..+.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~---~~~~~~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG---AIDLGRVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC---CCCcCCCCCeEEEEE
Confidence 221 34567777777777788888888888899999999999999998875443211111 001111235799999
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
|+|+||+++++|+|+||+++||+++||||+||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 340 vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 340 VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 99999865679999999999999999999999999999999999995 68999999999999999999999999999999
Q ss_pred CCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 425 LFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 425 LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
||+|||+|||+++ ++++|+++++|++.+++++++..+ +|+||.+||+|.+|||||||||+|||||+++|+||||||||
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999997 468999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcccchHH
Q psy1502 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGTVSAKV 572 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~~~~~~ 572 (597)
|+||++||+.+++.|.+..+++|+|+||||++.++.||+|++|++|+++| ++++.|++++..+..+.++.
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~~~~~~ 577 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGMLQEDE 577 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhhccccch
Confidence 99999999999999999888999999999999999999999999999998 46788999987554433333
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-84 Score=725.38 Aligned_cols=516 Identities=23% Similarity=0.318 Sum_probs=427.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+.+++.+..|.++..+++..+..... . ........++++.++..++.+++.++....+.++..++|..+|+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 99 (571)
T TIGR02203 23 MILVAATESTLAALLKPLLDDGFGGRDR-S--VLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG 99 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCch-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444556666676677777765543211 0 011122234455555667778888888999999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
.|+++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~ 179 (571)
T TIGR02203 100 LPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179 (571)
T ss_pred CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888887777777777777666
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILIS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 267 (597)
+..+......+++.+.+.|.++|+++||++|.++++.++|++..+...+..........+...+..++..+... +++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (571)
T TIGR02203 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIA 259 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777888999999999999999999999999999887766554433333223233333332222111 11222
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.... .++.|.+.++..++..+..|+..+...+..++.+..+.+|+.++++.+++.+.... +. .+..++|+|+
T Consensus 260 ~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~--~~~~~~i~~~ 334 (571)
T TIGR02203 260 LFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR---AI--ERARGDVEFR 334 (571)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---CC--CCCCCeEEEE
Confidence 2221 34567777778888888999999999999999999999999999876544321110 11 1234579999
Q ss_pred eeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+||||+
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred EEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 99999964 4679999999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 423 PVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|+||+|||+|||++++ ++++++++++++.+++++++.++ +||||.+||+|.+||||||||||||||++++|||||||
T Consensus 415 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred cccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999874 68999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||+||++||+.+++.|.+..+++|+|+||||++.+..||+|++|++|++++
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999988999999999999999999999999999998
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-83 Score=713.67 Aligned_cols=512 Identities=19% Similarity=0.240 Sum_probs=409.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
++..+.+++.+..|.++..++|........ ......+...+++++++..++.+++.+...+.+.++..++|.++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777787788888766422111 111112233344445555677888888888999999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|+++|++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|++++++++.+++..++...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887776666555544455554
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-L 265 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 265 (597)
.++..+......+++.+.+.|.++|+++||+|+.|+++.++|++..++..+...+......+......++..+...++ +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555678899999999999999999999999999988776554433222222222222222222111111 1
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 266 ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 266 ~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++++.. .++.|.+.++..++..+..++..+...+..++.+..+++|+.++++.+++... .. +...+..+.|+
T Consensus 248 ~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~----~~~~~~~~~i~ 322 (529)
T TIGR02857 248 YIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KA----PVTAAPAPSLE 322 (529)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc----CCCCCCCCeEE
Confidence 111111 23455566666667777888888888999999999999999999875432111 11 11111235799
Q ss_pred EEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+|+||+. +++|+|+||+|+||+++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+|||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 99999999764 479999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|+|||+|||+++ ++++|+++++|++.+++++|++++ +||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999986 468999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
|||||+||++||+.+++.|.++.+++|+|+||||+++++.||+|++|
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999998899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=713.56 Aligned_cols=530 Identities=20% Similarity=0.231 Sum_probs=421.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
..+.+++.+..|.++..++|........ ......++..++++.++..++.+++.++....+.++..++|.++|+++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 81 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSR 81 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566778888888888888865432111 00111122233333344455666667777778899999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVS-LSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
+|+++|+++++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++.+++.+++...+.+..
T Consensus 82 ~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 82 QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred CCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888788888887766666666555 58999998877777666666666666555
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLL-YLSTILI 266 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 266 (597)
++..+......+++.+.+.|.++|+++||+||.++.+.++|.+..++..+..................+..+ .+.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444445567788999999999999999999999999998877665443332222222112222211111 1111111
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.+.. .++.|.+.++..+...+..|+..+...+..++.+.++.+|+.++++.+++.+.... . ..+..+.|+|
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~---~--~~~~~~~I~~ 316 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE---P--VPEGRGELDV 316 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC---C--CCCCCCcEEE
Confidence 22211 23566777777777788888888888999999999999999999876543211110 0 1122457999
Q ss_pred EeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 344 QNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 344 ~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+||+|+|+. ++++|+|+||+|+||+++|||||||||||||+++|+|+|+ ++|+|++||+|+++++.+++|++|+||||
T Consensus 317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 999999974 3579999999999999999999999999999999999995 68999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 422 DPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+|+||++||+|||+++ ++++++++++|++.+++++++.++ +||||.+||+|.+|||||||||+||||++++|+|||||
T Consensus 397 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 397 TPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred CCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999987 468999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|++++..+
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998 5678899988744
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-82 Score=709.22 Aligned_cols=531 Identities=19% Similarity=0.231 Sum_probs=421.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 26 EILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105 (597)
Q Consensus 26 ~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (597)
.++..+.+++.+..|.++..++|....... ...++..++++.++..+..++..++...+..++..++|.++|++
T Consensus 25 ~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 98 (585)
T TIGR01192 25 VIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGR 98 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777788878888886553211 11112222222233334444444455556666677788899999
Q ss_pred HHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLR 185 (597)
Q Consensus 106 ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~ 185 (597)
++++|++||+++++|++++|+++|++.+..++...+..++..++.++++++++++++|.+++++++++++.+++...+.+
T Consensus 99 l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 99 IISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888999999999998888777777776666666
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 186 TSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTI 264 (597)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 264 (597)
..++..+......+++.+.+.|.++|+++||+||.++.+.++|++..+...+.................++..+. ++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 258 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCIL 258 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555556677889999999999999999999999999988877654433222221111111222221111 1112
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccE
Q psy1502 265 LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341 (597)
Q Consensus 265 ~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 341 (597)
+++.... .++.|.+.+++.++..+..++..+...+..+..+..+++|+.++++.+++.+.... .....+..+.|
T Consensus 259 ~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~~~i 335 (585)
T TIGR01192 259 VIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD---APELPNVKGAV 335 (585)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc---CCCCCCCCCeE
Confidence 2222221 33567777777777788888888888899999999999999998876543211111 01111124579
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+|+||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++++|||
T Consensus 336 ~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 336 EFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 999999999865679999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|++|++|||.++ ++++++++++|++.+++++++.++ +|+||.+||+|.+|||||||||+|||||+++|+||||
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999987 468999999999999999999987 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|||||+||+++|+.+++.|.+..+++|+|+||||++++..||+|++|++|++++ +++|.|++++..+
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhC
Confidence 999999999999999999999888999999999999999999999999999998 5677888888644
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-82 Score=709.52 Aligned_cols=531 Identities=22% Similarity=0.314 Sum_probs=423.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 28 LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107 (597)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (597)
+.++.+++.+..|.++..+++..+..... ......+..++++.++..++.+++.++...++.++..++|.++|++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 26 ALLITAAATLSLPYAVRLMIDHGFSKDSS---GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777787788888765532211 011112233333344445667777788888999999999999999999
Q ss_pred cCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 108 ~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
++|+++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++|++++++++.+++.+++...+.+..
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 182 (576)
T TIGR02204 103 SLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182 (576)
T ss_pred cCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877766665555555555555
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL-STILI 266 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 266 (597)
++..+.......++.+.+.|.++|+++||+++.++++.++|++..+...+...+......++..+...+..... .++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
T TIGR02204 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWV 262 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566778899999999999999999999999999988776544433322222222222222211111 11111
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.... .++.|.+.++..++..+..++..+...+..+..+..+++|+.++++.+++.+.... ......+..+.|+|
T Consensus 263 g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~ 340 (576)
T TIGR02204 263 GAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH--PKTLPVPLRGEIEF 340 (576)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC--CccCCcCCCceEEE
Confidence 12111 23556676777777888899999999999999999999999999876543211110 00111122457999
Q ss_pred EeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 344 QNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 344 ~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+||+|+||++ +++|+|+||+|+|||++||+|+||||||||+++|+|+|+ .+|+|.+||+|+++++.+++|++|+|||
T Consensus 341 ~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~ 420 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420 (576)
T ss_pred EEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEc
Confidence 9999999742 579999999999999999999999999999999999995 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|+|||+|||++++ +.++++++++++.++++++++.+ +|+||.+||+|.+|||||||||+||||++++|+||||
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ilil 500 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLL 500 (576)
T ss_pred cCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999864 67899999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
|||||+||+++|+.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++ ++++.|++++.
T Consensus 501 DEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 501 DEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred eCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 999999999999999999999988999999999999999999999999999998 34455666554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-84 Score=654.92 Aligned_cols=477 Identities=22% Similarity=0.310 Sum_probs=396.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 84 STAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV-SLSVN 162 (597)
Q Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~-l~~~~ 162 (597)
..++...++.....+--+.|.|+.++++.|+.++.+|.+...+......|+..+...+.++++.++-+....++ ...++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 34566677888888999999999999999999999999999999888888888888888888777765555444 44589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 163 PLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLF 242 (597)
Q Consensus 163 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (597)
||.++++++.+.++.++...........++.-+.+.++.++...+++-+..++|.||.|+++..+|+...+.+.....+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99888777666655444333322223334444456667788899999999999999999999999999988876655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1502 243 VYTNMGFAYLIDFLCLLYLSTIL-ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKL 318 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 318 (597)
.....++.+....+......... +..... .++.|+++..-++.+++..|+..+.....++.++...+++.+++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 43333333333333222221111 111111 34567777777888888889988888999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCC-CcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCce
Q psy1502 319 EPEGNLSPNYEDENEIWP-VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396 (597)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~ 396 (597)
+.+....++ .++.+| ..|.|.|+||+|.|...+++|+|+||++++|+++|+||+||+||||++.||.|||+ ++|.
T Consensus 243 ~~~v~d~pd---a~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDAPD---APPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccCCC---CccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 665433222 233342 35789999999999878899999999999999999999999999999999999996 7899
Q ss_pred EEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCC
Q psy1502 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTN 474 (597)
Q Consensus 397 I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~ 474 (597)
|.+||+|++++..+++|+.||.||||..|||+|+..||.+++ ++++||++.|++.|++++||+.+ +||||.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999999974 79999999999999999999998 9999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV-- 552 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive-- 552 (597)
||||||||+||||++||+|+||+|||||||||..||+.||.+|++..+++|+++|||||||+.+||+|+||++|+|+|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ecCchhHhhHh
Q psy1502 553 ------SSFGFFFSKDL 563 (597)
Q Consensus 553 ------~~~g~y~~l~~ 563 (597)
+.+|.|++||.
T Consensus 480 ~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAAGGLYAEMWR 496 (497)
T ss_pred cHHHHHHcCChHHHHhc
Confidence 66899999985
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-81 Score=651.45 Aligned_cols=480 Identities=21% Similarity=0.311 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 78 VAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV 157 (597)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~ 157 (597)
+..|+-.+..+.+..++..++|.++|+++...++.-..+.++||+++|++.|++.+++.+...+.+.+.+++...+..+.
T Consensus 73 ~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~ 152 (573)
T COG4987 73 AARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIG 152 (573)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHH
Q psy1502 158 SLSVNPLFSIPVLILLYL-FWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHS 236 (597)
Q Consensus 158 l~~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~ 236 (597)
+.+++|.+++.+.+++.+ .++++..+.+..+...+.-...++.+.+.+.|.+.|..+.+.||+++.+.+.+.+......
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999988766654443 3444555555555554444556677889999999999999999999999999988766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy1502 237 STWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGG-----KVGLAVTQTMTLMGVVQWAM-RQAAEVENHMISVK 310 (597)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~ 310 (597)
+...+......|....+.++..+.+... +.+.......| ...+++..++..+.++..+. ..+.++.+...|++
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~-l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~ 311 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGL-LLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHH
Confidence 5544444444443333333322221111 11111111111 12222333355566666665 56688889999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCC-ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 311 RLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 311 ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
|+.++.+.+++...+.. ..+ .+.. .++++||||+||+++ ++|+|+||++++||+|||+|+||||||||+++|.|
T Consensus 312 Rl~~i~~q~~e~~~~~~--~~~--~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 312 RLNDILDQKPEVTFPDE--QTA--TTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred HHhhhccCCcccCCCcc--ccC--Cccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 99999887665433211 011 1112 699999999997654 79999999999999999999999999999999999
Q ss_pred ccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCch
Q psy1502 390 LAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNM 466 (597)
Q Consensus 390 l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT 466 (597)
-|+ ++|+|.++|.++..++.+.+|+.|++++|.++||+||+||||... +++||||+++|++.+++++++++. +||+|
T Consensus 387 ~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t 466 (573)
T COG4987 387 AWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNT 466 (573)
T ss_pred ccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhc
Confidence 885 789999999999999999999999999999999999999999986 589999999999999999999997 99999
Q ss_pred hhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 467 ~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
++||+|.+||||||||+||||+|++|+|++||||||.+||++||+.|++.|.+..++||+|+||||+..++.||||+|||
T Consensus 467 ~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~ 546 (573)
T COG4987 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLD 546 (573)
T ss_pred hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEE--------ecCchhHhhHh
Q psy1502 547 SGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 547 ~G~Ive--------~~~g~y~~l~~ 563 (597)
+|+|+| .++|.|+++++
T Consensus 547 ~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 547 NGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred CCeeeecCCHHhhhccccHHHHHhc
Confidence 999999 55677777664
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-78 Score=676.11 Aligned_cols=514 Identities=17% Similarity=0.183 Sum_probs=401.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 24 QFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMF 103 (597)
Q Consensus 24 ~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 103 (597)
...++..+.+++.+..|.++..++|..+..... .....+++.++++.++..++.+++.++....+.++..++|.++|
T Consensus 10 ~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 86 (544)
T TIGR01842 10 IVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV---PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIF 86 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677888888888888876532211 11112233333444455677788888888899999999999999
Q ss_pred HHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 104 EAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPK-AMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKA 182 (597)
Q Consensus 104 ~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~-~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~ 182 (597)
++++++|+. ..+...+++++|++.+++++.. .+..++..++.+ +.++++++++|++++++++.+++.+++...
T Consensus 87 ~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~~i~~~ 160 (544)
T TIGR01842 87 AASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAVVLVGLALL 160 (544)
T ss_pred HHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999984 2366789999999999998877 444444444444 445678999999988776665555555444
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 183 YLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-L 261 (597)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 261 (597)
+.+..++..+......+++.+.+.|.++|+++||+||.++++.++|++..++..+...+..............+..+. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (544)
T TIGR01842 161 NNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQS 240 (544)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456667788999999999999999999999999998877654433322221111111122221111 1
Q ss_pred HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCc
Q psy1502 262 STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVL 338 (597)
Q Consensus 262 ~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (597)
.++.++++.. .++.|.+.+++.++..+..++..+...+..++.+..+.+|+.++++.+++.... . . ..+..
T Consensus 241 ~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~---~--~~~~~ 314 (544)
T TIGR01842 241 LVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-M---P--LPEPE 314 (544)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-C---C--CCCCC
Confidence 1112222221 345677777777778888999999999999999999999999998765442211 0 0 11124
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+.|+++||+|+|++ ++++|+|+||+++||+++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 57999999999975 3689999999999999999999999999999999999985 789999999999999999999999
Q ss_pred EEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||||+|++|++|++|||++++ ++++++++++++.++++++++.+ +|+||.+||+|.+|||||||||+||||++++|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 58999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||||+||+++|..+.+.|.++. +++|+|+||||++++..||+|++|++|++++
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR 533 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999885 5899999999999999999999999999998
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-79 Score=734.43 Aligned_cols=479 Identities=22% Similarity=0.276 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 66 IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145 (597)
Q Consensus 66 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i 145 (597)
.+.+++++++.+++.+++.+++.+++.++..++|.++|++++++|++||++.++|++.+++++|++.++..+...+..++
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~ 179 (1466)
T PTZ00265 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIF 179 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHH
Q psy1502 146 QGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILV 225 (597)
Q Consensus 146 ~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~ 225 (597)
..+++++++++++|+++|.+++++++++++++++..++.+..+...+......++..+.+.|+++|+++||+|+.|+++.
T Consensus 180 ~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 259 (1466)
T PTZ00265 180 TYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTIL 259 (1466)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHH
Confidence 99999999999999999999998888888777776666666555555555555678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHH
Q psy1502 226 EEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLY-LSTILISFFFFA-----------DIGGKVGLAVTQTMTLMGVVQ 293 (597)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~g~i~~~~~~~~~~~~~~~ 293 (597)
++|++......+...+.............++..+. ..+++++..... ...|.+.+++.+.+.....+.
T Consensus 260 ~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~ 339 (1466)
T PTZ00265 260 KKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLT 339 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHH
Confidence 99998776655443322222221111222211111 111111111111 112333322222222222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEE
Q psy1502 294 WAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIG 371 (597)
Q Consensus 294 ~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~va 371 (597)
.+...+..++.+.++++|++++++.+++.+.... . ...+..+.|+|+||+|+|+++ .++|+|+||+|++||++|
T Consensus 340 ~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~---~-~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~va 415 (1466)
T PTZ00265 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDD---G-KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---C-ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEE
Confidence 4455677889999999999999987654321111 0 111123479999999999753 369999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhcccc-CCceEEE-cceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-----------
Q psy1502 372 IVGRTGAGKSSLIAAIFRLAE-VEGVIKI-DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE----------- 438 (597)
Q Consensus 372 IVG~SGsGKSTL~~LL~~l~~-~~G~I~i-dg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~----------- 438 (597)
||||||||||||+++|+|+|+ ++|+|++ ||+|+++++..+||++||||||+|.||++||+|||.++.
T Consensus 416 IvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~ 495 (1466)
T PTZ00265 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSN 495 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcc
Confidence 999999999999999999994 7899999 579999999999999999999999999999999998742
Q ss_pred -----------------------------------------------CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhC
Q psy1502 439 -----------------------------------------------KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYE 470 (597)
Q Consensus 439 -----------------------------------------------~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge 470 (597)
+++++++++||+.+++++|+..+ +||||.+|+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~ 575 (1466)
T PTZ00265 496 YYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 (1466)
T ss_pred ccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC
Confidence 25678999999999999999998 999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
+|.+|||||||||+|||||+++|+|||||||||+||+++|..|+++|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999986 479999999999999999999999986
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-78 Score=671.25 Aligned_cols=476 Identities=15% Similarity=0.142 Sum_probs=377.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 69 YFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGV 148 (597)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~ 148 (597)
++++.++..++.++..++...++.++..++|.++|++++++|++||+++++|++++|+++|++.+++++.. +.+++..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~ 137 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIAL 137 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHH
Confidence 44445555677788888888899999999999999999999999999999999999999999999998864 77888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH--HHHH
Q psy1502 149 MQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK--ILVE 226 (597)
Q Consensus 149 ~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~--~~~~ 226 (597)
++++++++++++++|.+++++++++++.+++..+..+..++.....+...+++.+.+.|.+.|++++|+|+.++ ...+
T Consensus 138 ~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~ 217 (555)
T TIGR01194 138 AIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG 217 (555)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999988776666555544444444344444444456678899999999999999999954 5567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 227 EFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-SFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENH 305 (597)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (597)
+|.+..++..+.................++..+..++.++ +.+...++.|.+.+++.++..+..|+..+...+..++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a 297 (555)
T TIGR01194 218 AIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQA 297 (555)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666554433222111111111112111111111111 111113456777777888888889999999999999999
Q ss_pred HHHHHHHHHhhccCCCC-CCC--CCCCCC--CCCCCCcccEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCC
Q psy1502 306 MISVKRLVEYTKLEPEG-NLS--PNYEDE--NEIWPVLGKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRT 376 (597)
Q Consensus 306 ~~s~~ri~~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~S 376 (597)
.++++|+.++++.++++ ... +..... .......+.|+|+||+|+|++. +++|+|+||++++|+++||||||
T Consensus 298 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~s 377 (555)
T TIGR01194 298 QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGEN 377 (555)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCC
Confidence 99999999997632211 110 000000 0001123579999999999652 36999999999999999999999
Q ss_pred CCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHH
Q psy1502 377 GAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455 (597)
Q Consensus 377 GsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~ 455 (597)
|||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||+||++||++|+++|+. +++++++++++++.++++
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~ 455 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIA 455 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCc
Confidence 999999999999998 57899999999999999999999999999999999999999963 467899999999999999
Q ss_pred HHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHH-h-cCCcEEEEeccC
Q psy1502 456 DMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-K-FADCTVLTIAHR 532 (597)
Q Consensus 456 ~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~-~-~~~~TvI~IaHr 532 (597)
++++.+ +||||. .+|||||||||+||||++++|||||||||||+||++||+.+++.+.+ . .+++|+|+||||
T Consensus 456 ~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 456 DKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred hhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 999998 999994 79999999999999999999999999999999999999999988743 3 468999999999
Q ss_pred chhHhhcCEEEEEeCCeEEE
Q psy1502 533 LHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 533 lsti~~~D~Iivl~~G~Ive 552 (597)
+++++.||+|++|++|+|+|
T Consensus 531 ~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 531 DQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999998
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-74 Score=639.79 Aligned_cols=464 Identities=14% Similarity=0.143 Sum_probs=356.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 74 VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSG 153 (597)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~ 153 (597)
++..++.+++.++...++.++..++|.++|++++++|+++|+++++|++++|+++|++.+...+. .+..++.+++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 59 LLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33345667778888889999999999999999999999999999999999999999999998765 46778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchH---HHHHHHHHH
Q psy1502 154 ALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAA---KILVEEFDY 230 (597)
Q Consensus 154 ~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e---~~~~~~~~~ 230 (597)
+++++++++|.+++++++++++.+++...+.+..++..+......+++.+.+.|.++|+++++ ++.+ +.+.++|++
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999988777777666665556555554444445566778899999999999995 5443 456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 231 HQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF-ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISV 309 (597)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 309 (597)
..+...+.................++.....++..+..... ....+...++..+...+..|+..+...+..++.+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 296 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAF 296 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554332222111111111111111111111111000000 01111222223333345578888888899999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 310 KRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 310 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+.++++.+++.+.+.. .+ .+..+.|+|+||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|
T Consensus 297 ~ri~~l~~~~~~~~~~~~---~~--~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 297 NKLNKLALAPYKAEFPRP---QA--FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred HHHHHHhccccccccccc---cc--cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999998754432211110 00 1123579999999999866679999999999999999999999999999999999
Q ss_pred ccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhh
Q psy1502 390 LAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV 468 (597)
Q Consensus 390 l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~v 468 (597)
+|+ ++|+|.+||+|+++++.+++|++|+|||||+++|++|++|| +.+.++++++++++.+++.+++...+|.
T Consensus 372 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 444 (547)
T PRK10522 372 LYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLELEDGR---- 444 (547)
T ss_pred CCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhccccC----
Confidence 994 78999999999999999999999999999999999999999 3467788888888888776665433332
Q ss_pred hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 469 ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
.+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|+
T Consensus 445 -~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 523 (547)
T PRK10522 445 -ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMR 523 (547)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEE
Confidence 2489999999999999999999999999999999999999999999997654 4799999999999999999999999
Q ss_pred CCeEEE
Q psy1502 547 SGVAVV 552 (597)
Q Consensus 547 ~G~Ive 552 (597)
+|+++|
T Consensus 524 ~G~i~e 529 (547)
T PRK10522 524 NGQLSE 529 (547)
T ss_pred CCEEEE
Confidence 999998
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-72 Score=680.87 Aligned_cols=508 Identities=16% Similarity=0.189 Sum_probs=368.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAG-ISR---STAFYSACMRCSKGIHKKMFE 104 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~~~lr~~l~~ 104 (597)
+.+..++....|.++..+++....... .... +.+++++++..++. +.. .+....++.++...++..+|+
T Consensus 310 ~i~~~~~~~~~P~ll~~li~~~~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~ 382 (1495)
T PLN03232 310 KIGHDLSQFVGPVILSHLLQSMQEGDP-----AWVG--YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFH 382 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-----cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778777777775433211 0111 11222222222221 111 112245677788888899999
Q ss_pred HHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy1502 105 AVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLI---LLYLFWRLSK 181 (597)
Q Consensus 105 ~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~---~~~~~~~~~~ 181 (597)
|++++|..++++.++|++++++++|++.+++++ ..+..++..++.+++++++++. .+++..++ +++++..+..
T Consensus 383 k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~---~lg~~~l~~~~v~~l~~pl~~ 458 (1495)
T PLN03232 383 KSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQ---QLGVASLFGSLILFLLIPLQT 458 (1495)
T ss_pred HHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886 5566666666655555444332 22222211 1111112223
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYL 261 (597)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (597)
.+.+..++..+.......++.+.+.|.++|+++||+|+.|+.+.+++++..+...+...+......+......... ..+
T Consensus 459 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 537 (1495)
T PLN03232 459 LIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP-VVV 537 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3334444444444445566788999999999999999999999999988766544433222211111111111111 111
Q ss_pred HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCc
Q psy1502 262 STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVL 338 (597)
Q Consensus 262 ~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (597)
.++.++.+.. .++.|.+.+++.++..+..|+..+...+..+..+.++++|+.++++.+++..... ++ ..+..
T Consensus 538 ~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~-~~~~~ 612 (1495)
T PLN03232 538 TLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PP-LQPGA 612 (1495)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CC-cCCCC
Confidence 1111222111 2345566666667777788888888889999999999999999987654321111 00 01123
Q ss_pred ccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcC
Q psy1502 339 GKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~ 415 (597)
+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+ .+|.+. .+|++
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 46999999999964 3679999999999999999999999999999999999986 578763 35889
Q ss_pred cEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+||||+|+||+|||||||.++++++++++++|++.|+++++++.+ +|+||.|||+|.+||||||||||||||+|++|+
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999889999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 495 ILVLDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||||||||||+++|+.|.+. +....+++|+|+||||++++..||+|++|++|+|++ +.++.|++++..+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 9999999999999999988654 666778999999999999999999999999999998 4567788877643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=675.43 Aligned_cols=457 Identities=17% Similarity=0.187 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 88 YSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI 167 (597)
Q Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l 167 (597)
..++.++...++..+|+|.+++|..++.+.++|++++++++|++.++.++ ..+..++..++.+++++++++..-.+.++
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888999999999999999999999999999999999999987 45666667777666665555442222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 168 PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247 (597)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (597)
+.++++++++.+...+.+..++..+.......++.+.+.|.++|+++||+|+.|+.+.+++.+..+...+...+......
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333333444444444556678899999999999999999999999998876654433222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy1502 248 GFAYLIDFLCLLYLSTILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNL 324 (597)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 324 (597)
+......... ..+.++.++.+.. .++.|.+.+++.++..+..|+..+...+..+..+.++++|+.++++.++....
T Consensus 525 ~~~~~~~~~~-~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIP-VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 1111111110 1111111222111 23455555555666667778888888889999999999999999875533211
Q ss_pred CCCCCCCCCCCCCcccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC-ceEEEc
Q psy1502 325 SPNYEDENEIWPVLGKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE-GVIKID 400 (597)
Q Consensus 325 ~~~~~~~~~~~~~~~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~-G~I~id 400 (597)
+. ++ ..+..+.|+|+||+|+|++ ++++|+|+||+|++|+++|||||||||||||+++|+|+++ .+ |+|.+
T Consensus 604 ~~----~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 PN----PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred cC----Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 11 00 0112346999999999964 3679999999999999999999999999999999999985 78 89974
Q ss_pred ceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhH
Q psy1502 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 401 g~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQ 479 (597)
|++|+||||+|+||+|||||||.++.+++++++++|++.|+++++++.+ +|++|.|||+|.+|||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 7799999999999999999999999889999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHH-HHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE------
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ-RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV------ 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~-~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive------ 552 (597)
|||||||||+|++|+||||||||||||+++++.|. +.+....+++|+|+||||++.+..||+|++|++|+|++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999885 56777778999999999999999999999999999998
Q ss_pred --ecCchhHhhHhh
Q psy1502 553 --SSFGFFFSKDLI 564 (597)
Q Consensus 553 --~~~g~y~~l~~~ 564 (597)
++++.|++++..
T Consensus 826 L~~~~~~~~~l~~~ 839 (1622)
T PLN03130 826 LSNNGPLFQKLMEN 839 (1622)
T ss_pred HHhcchhHHHHHHh
Confidence 345667777653
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-71 Score=570.35 Aligned_cols=522 Identities=19% Similarity=0.223 Sum_probs=393.8
Q ss_pred hhhHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 17 ATREEYRQ----FEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACM 92 (597)
Q Consensus 17 ~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (597)
...-.||. -.++..+..++.+.+|.++.++-|..+...+.. +.....+..++++++..++.++|..+..+++.
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~---TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~ 92 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVP---TLVMLTVLALGLYAFQGLLDAIRSRVLVRIGE 92 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445553 334444445677778888889998877654321 11222223334455666788899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 93 RCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKA-MLDAAQGVMQVSGALIVSLSVNPLFSIPVLI 171 (597)
Q Consensus 93 ~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~-~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~ 171 (597)
++...+...+|....+.|.. .+.+|+=.+-+ +|.+++++|+... ...++-...+ .+.++++|.++||+.+..+.
T Consensus 93 ~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v~fl~Hp~lG~~a~~ 167 (580)
T COG4618 93 RLDRQLNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAVIFLFHPWLGLIALA 167 (580)
T ss_pred HHHHHhccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877765 34455444444 6999999998763 3444444444 44566778899999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 172 LLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAY 251 (597)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (597)
...+++.+...-....++-.+.........+.....+..+.++|++.|......++|.+....+..........+..+..
T Consensus 168 ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~ 247 (580)
T COG4618 168 GAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGA 247 (580)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 65554444333333333333333344455567888899999999999999999999988876654432222111121111
Q ss_pred HHHHHHHHHH-HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q psy1502 252 LIDFLCLLYL-STILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPN 327 (597)
Q Consensus 252 ~~~~~~~~~~-~~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~ 327 (597)
..-.+=...- .++..+.+.. .+++|.+.+.-..+...+.|+-..+..|.++..+..|.+|+.+++...|.....
T Consensus 248 ~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-- 325 (580)
T COG4618 248 LSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-- 325 (580)
T ss_pred HHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC--
Confidence 1111111111 1111122211 345554444334445667889999999999999999999999998865542211
Q ss_pred CCCCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC
Q psy1502 328 YEDENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE 405 (597)
Q Consensus 328 ~~~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~ 405 (597)
-+.+...|.+.+|++++.-|+ ++++|+|+||++++|+-+|||||||||||||+++|.|.+ |.+|.|.+||-|++
T Consensus 326 ----m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 326 ----MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred ----CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 111123678999999997764 458999999999999999999999999999999999987 57899999999999
Q ss_pred CCChHHHhcCcEEEeCCCCCCCccHHhhcc-cCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHH
Q psy1502 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 406 ~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~-~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.+.+=++|||.|||..||+|||+|||+ |+++.++|.|.+|++.|+.||.|..+ +||||.|||+|..|||||||||
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 999999999999999999999999999996 56689999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++|||||.||.+++||||-|+||.+-|+.+.++|.+.. ++.|+|+||||++.+..+|+|+||++|++..
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh
Confidence 99999999999999999999999999999999998765 4899999999999999999999999999854
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=593.56 Aligned_cols=496 Identities=14% Similarity=0.115 Sum_probs=379.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 33 AFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSL----IVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 33 a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
+++.+..|.+...+++..+..... .....++.++++ .++..+..++..++......++..+++.++|++...
T Consensus 109 t~~~l~~~~l~~~iid~l~~~~~~----~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 184 (659)
T TIGR00954 109 TYLSVYVATLDGQIESSIVRRSPR----NFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTF 184 (659)
T ss_pred HHHHHHHHHHhhHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 345556666667777776643210 011112222222 223334445555556667777888888888888888
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLS-VNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
.+..+|++ ++|++.+|+++|++.+...+...+..++..++.++++++.++. .+|.+++++++..++..++.+++.+..
T Consensus 185 ~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 263 (659)
T TIGR00954 185 YKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPI 263 (659)
T ss_pred EEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccch
Confidence 88888886 7999999999999999999999999999999999988888886 999998888888888778888888777
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLL---YLSTI 264 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 264 (597)
.+..+......+++.+.+.|.++|+++||+|+.++.+.++|++..++..+..........++..+..++... .++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 777766777788899999999999999999999999999999988776655444433333333333333211 11111
Q ss_pred HHHH-HHH-------HhhhhHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-------
Q psy1502 265 LISF-FFF-------ADIGGKVGL-AVTQ---TMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLS------- 325 (597)
Q Consensus 265 ~~~~-~~~-------~~~~g~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~------- 325 (597)
+.+. +.. .++.|.+.. ++.+ +..+..++..+.....+++.+.++.+|++++++.+++....
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111 110 012233222 3333 44567888888889999999999999999998753321100
Q ss_pred CCCCCC-------------CCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 326 PNYEDE-------------NEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 326 ~~~~~~-------------~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
...... .......+.|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|++|
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~ 503 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP 503 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 000000 0001123569999999999766679999999999999999999999999999999999986
Q ss_pred -CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--------CCChHHHHHHHHHhcHHHHHHhcCC
Q psy1502 393 -VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--------KYPDYVLWTALQEVELKDMIMEGAG 463 (597)
Q Consensus 393 -~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--------~~~~e~i~~a~~~a~l~~fI~~l~G 463 (597)
++|+|.+|+ |++|+||||+|++|++|++|||.++. +.++++++++++.+++++++..+.|
T Consensus 504 ~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g 572 (659)
T TIGR00954 504 VYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGG 572 (659)
T ss_pred CCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCC
Confidence 679999874 67899999999999999999998742 3578899999999999999887799
Q ss_pred CchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEE
Q psy1502 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 464 ldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
|||..+ .+.+||||||||++||||++++|++||||||||+||++++..+.+.+++. ++|+|+||||+++++.||+|+
T Consensus 573 ~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il 649 (659)
T TIGR00954 573 WSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLL 649 (659)
T ss_pred cccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEE
Confidence 999987 46799999999999999999999999999999999999999999999874 899999999999999999999
Q ss_pred EEeC
Q psy1502 544 VMDS 547 (597)
Q Consensus 544 vl~~ 547 (597)
+|++
T Consensus 650 ~l~~ 653 (659)
T TIGR00954 650 YMDG 653 (659)
T ss_pred EEeC
Confidence 9974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-65 Score=619.36 Aligned_cols=513 Identities=16% Similarity=0.144 Sum_probs=364.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYI--GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVV 107 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 107 (597)
++..++....|.++..+++........ ....+. ..++++.++..++.....+.....+.++...++..+|+|++
T Consensus 327 l~~~~~~~~~P~ll~~li~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 327 AIHDLMMFIGPQILSLLIRFVNDPMAP----DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777654332211 011111 11112222222222222234556788899999999999999
Q ss_pred cCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 108 YSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187 (597)
Q Consensus 108 ~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 187 (597)
++|..++++.++|++++++++|++.+.... ..+..++..++.+++++++++..-.+.+++.++++++++.+...+.+..
T Consensus 403 ~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~ 481 (1522)
T TIGR00957 403 VITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKT 481 (1522)
T ss_pred hCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754 4555565666655555544333222222222222222333333333333
Q ss_pred HHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILIS 267 (597)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (597)
+...+.......+..+.+.|.++|+++||.|+.|+.+.+++++..+...+........... ..........++.++.++
T Consensus 482 ~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~ 560 (1522)
T TIGR00957 482 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV-GTFTWVCTPFLVALITFA 560 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444445566778999999999999999999999999988776544332222111111 111111111111111111
Q ss_pred HHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 268 FFFF-----ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 268 ~~~~-----~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
.+.. .+..+.+...+.++..+..|+..+...+..+..+.++++|+.++++.+++.+.... .........+.|+
T Consensus 561 ~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~ 638 (1522)
T TIGR00957 561 VYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIE--RRTIKPGEGNSIT 638 (1522)
T ss_pred HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc--ccccCCCCCCcEE
Confidence 1111 11223233333444456678888888899999999999999999976543211100 0000001123699
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++|++|+|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+|| +|+|||
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~ 705 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVP 705 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEc
Confidence 9999999964 3679999999999999999999999999999999999985 789999987 599999
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|+|++|++||+|||.++.+.++++..++++.|++.+++..+ +|++|.+||+|.+|||||||||+||||++++|+|+|||
T Consensus 706 Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 706 QQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred CCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999998777888899999999999999988 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHH---hcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 500 EATANVDPKTDLLIQRTIRK---KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~---~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
|||||||+++++.|.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+|++ ++++.|.+++.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 860 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence 99999999999999999853 457899999999999999999999999999998 34567777765
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=582.29 Aligned_cols=455 Identities=19% Similarity=0.226 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 88 YSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSI 167 (597)
Q Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l 167 (597)
...+.++...+-..+|+|.++++-..-...++|+++|-+++|++.+.++. ..+..+...++.+++++.+++..=.+-++
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~ 345 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSAL 345 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 44667777788888999999999998888999999999999999999875 44455556666655555544432222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 168 PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247 (597)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (597)
+.++++++++.+..+..+..++.+........+....++|.++||++||.|+.|+.|.++..+..++..+...+......
T Consensus 346 ~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 346 AGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333344444444444555555666778899999999999999999999999998887665444333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy1502 248 GFAYLIDFLCLLYLSTILISFFF-F---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGN 323 (597)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 323 (597)
. ..+.....-.+..++.++... . ...+...-..++++..+-.|+..+...+..+.++.+|++|+.+++..++..+
T Consensus 426 ~-~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~ 504 (1381)
T KOG0054|consen 426 L-NSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDP 504 (1381)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 1 111111111111111111111 1 1122222223344445556777777788888899999999999987654322
Q ss_pred CCCCCCCCCCCCCCcccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEc
Q psy1502 324 LSPNYEDENEIWPVLGKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKID 400 (597)
Q Consensus 324 ~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~id 400 (597)
.... .....+....|+++|.+|++++ .++.|+||||+|++|+.+||||+.|||||+|+..|+| +...+|++.++
T Consensus 505 ~~~~---~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 505 DSVE---RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred cccc---cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 1111 0111123446999999999953 4569999999999999999999999999999999999 55689999998
Q ss_pred ceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhH
Q psy1502 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 401 g~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQ 479 (597)
|. ++||||+||||||||||||.||.+++++...++++.|+|...++.+ .|-.|.|||+|.||||||
T Consensus 582 gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 582 GS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred Ce-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 73 9999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHH-HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEEecCchh
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFF 558 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I-~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive~~~g~y 558 (597)
||||++|||+|+|+||++||+|.||+|+.+.+.| .+.|..+.++||+|.|||.++.+++||+|++|++|+|++ .|.|
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~--~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVE--SGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEec--ccCH
Confidence 9999999999999999999999999999998887 566788889999999999999999999999999999998 5555
Q ss_pred HhhH
Q psy1502 559 FSKD 562 (597)
Q Consensus 559 ~~l~ 562 (597)
.++.
T Consensus 727 ~el~ 730 (1381)
T KOG0054|consen 727 EELL 730 (1381)
T ss_pred HHHH
Confidence 5555
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=594.43 Aligned_cols=498 Identities=16% Similarity=0.148 Sum_probs=359.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 29 KNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYI--GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 29 ~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
+++..++.+..|.++..+++........ .....+. ..++++.++..++.....+.....+.++...+...+|+|+
T Consensus 89 ~~~~~~~~~~~P~ll~~li~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~ 165 (1490)
T TIGR01271 89 LYFGEATKAVQPLLLGRIIASYDPFNAP---EREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKT 165 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777887777777654211110 0011111 1111222222233333444555677778888888889999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
++++...+++.++|++++++++|++.+...+... ..++..++.+++++++++...++.+++.++++++++.+..++.+.
T Consensus 166 L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 166 LKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred HhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876544 445566666666666666666655554444444444444455554
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI 266 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (597)
....++.......++.+.+.|.++||++||.|+.|+.+.+++.+..+...+..........+.. ...........++.+
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f 323 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYS-SAFFFSGFFVVFLSV 323 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444444445556778899999999999999999999999998877654443322221111111 111111111111111
Q ss_pred HHHHH--HhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEE
Q psy1502 267 SFFFF--ADIGGKVGLAVTQTMTLMGVV-QWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343 (597)
Q Consensus 267 ~~~~~--~~~~g~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f 343 (597)
+.+.. ....+.+...++++..+..++ ..+...+..+..+.++++||.+++..++...... . .....|++
T Consensus 324 ~~y~~~~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~----~~~~~i~~ 395 (1490)
T TIGR01271 324 VPYALIKGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----N----LTTTEVEM 395 (1490)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----c----CCCCceEE
Confidence 11111 112223233334444443443 4577778888899999999999997654321110 0 01235889
Q ss_pred EeeEEEeCC---------------------------------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 344 QNTNVRYLS---------------------------------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 344 ~nVsf~Y~~---------------------------------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++|+|+. .+++|+|+||+|++|+.++|+||+|||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999998842 13589999999999999999999999999999999998
Q ss_pred c-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhh
Q psy1502 391 A-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTV 468 (597)
Q Consensus 391 ~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~v 468 (597)
+ |.+|+|.+|| +|+||||+|++|++||+|||.++...++++..++++.|++.+++..+ +|++|.+
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~v 542 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVL 542 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccc
Confidence 8 4789999998 59999999999999999999988767777788899999999999998 9999999
Q ss_pred hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 469 YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 469 ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
||+|.+|||||||||+||||++++|+|+||||||||||+++++.|.+. +.++.+++|+|+|||+++.+..||+|++|++
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~ 622 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHE 622 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 6777789999999999999999999999999
Q ss_pred CeEEE
Q psy1502 548 GVAVV 552 (597)
Q Consensus 548 G~Ive 552 (597)
|+|++
T Consensus 623 g~i~~ 627 (1490)
T TIGR01271 623 GVCYF 627 (1490)
T ss_pred CEEEE
Confidence 99987
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-59 Score=565.29 Aligned_cols=509 Identities=13% Similarity=0.144 Sum_probs=368.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
+.+++..++.+..|.++..+++-...... .......++..+++..++..++.....+.....+.++...+...+|+|+
T Consensus 251 ~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~ 328 (1560)
T PTZ00243 251 PFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKC 328 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556778888777676654322111 0000001111111222222333333445556678888889999999999
Q ss_pred HcCCchhhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFS--TNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184 (597)
Q Consensus 107 l~~~~~~f~--~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~ 184 (597)
++++...+. +.++|++++.+++|++.+..++ ..+..++..++.+++++++++.+-.+.+++.++++++++.+..++.
T Consensus 329 l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~ 407 (1560)
T PTZ00243 329 FTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407 (1560)
T ss_pred HhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 5689999999999999999987 4456777888888888888777766666655555555555555555
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI 264 (597)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (597)
+.....++.......+..+.+.|.++||++||.++.|+.+.+++.+..+...+..........+...+.. ....++.++
T Consensus 408 k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~-~~p~l~~~~ 486 (1560)
T PTZ00243 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNN-ATPTLMIAV 486 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5544444444455666788999999999999999999999999998876554443332222221111111 111111111
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-----CCC---------C
Q psy1502 265 LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGN-----LSP---------N 327 (597)
Q Consensus 265 ~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~-----~~~---------~ 327 (597)
+++.+.. .++.+.+...+.++..+..|+..+...+..+..+.+|++||.++++.++... ... .
T Consensus 487 ~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 566 (1560)
T PTZ00243 487 VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHST 566 (1560)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccc
Confidence 1222111 2345555555666667777888888899999999999999999997643100 000 0
Q ss_pred C-C------C-------C---------------------------CCCCCCcccEEEEeeEEEeC---------------
Q psy1502 328 Y-E------D-------E---------------------------NEIWPVLGKIEFQNTNVRYL--------------- 351 (597)
Q Consensus 328 ~-~------~-------~---------------------------~~~~~~~~~I~f~nVsf~Y~--------------- 351 (597)
. . + + +......+.+.++|++|+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1560)
T PTZ00243 567 ACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGG 646 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 00000113477888877642
Q ss_pred ------------------------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC
Q psy1502 352 ------------------------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED 406 (597)
Q Consensus 352 ------------------------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~ 406 (597)
+++++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~------- 719 (1560)
T PTZ00243 647 HEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA------- 719 (1560)
T ss_pred ccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE-------
Confidence 1245899999999999999999999999999999999987 57899986
Q ss_pred CChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 407 VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 407 ~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++|+||||+|++|++||+|||.++...+++++.++++.++++++++.+ +|++|.+|++|.+|||||||||+|
T Consensus 720 ------~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaL 793 (1560)
T PTZ00243 720 ------ERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSL 793 (1560)
T ss_pred ------CCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHH
Confidence 3579999999999999999999987666677888999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||++.+|+|||||||||+||+.+++.+.+. +....+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 794 ARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~ 861 (1560)
T PTZ00243 794 ARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF 861 (1560)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998888654 444557899999999999999999999999999987
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=450.63 Aligned_cols=229 Identities=36% Similarity=0.692 Sum_probs=214.9
Q ss_pred ccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|.|+|+||+|+|+ +.+++|+|+||+|++||++||+|+||||||||+++|+|+++++|+|.+||.++..++...+|+.|+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 4689999999996 346799999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||||++.+|++|+++|+.+....++++++++++.+++.+++..+ +||+|.++|+|.+||||||||++||||++++|+||
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999865557789999999999999999998 99999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcc
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGT 567 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~ 567 (597)
||||||++||+++...+++.|.+...++|+|+||||++++..||||++|++|++++ +.++.|++++.+.+.
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 239 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcch
Confidence 99999999999999999999998888899999999999999999999999999999 445778888876654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=423.99 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=190.8
Q ss_pred CCCcccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC-
Q psy1502 335 WPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED- 406 (597)
Q Consensus 335 ~~~~~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~- 406 (597)
|+..+.|+|+|++|+|+ ..+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||+++.+
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 55667899999999996 34579999999999999999999999999999999999873 48999999999974
Q ss_pred -CChHHHhcCcEEEeCCCCCCCccHHhhcccCC---CCChHHH-----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh
Q psy1502 407 -VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDYVL-----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477 (597)
Q Consensus 407 -~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e~i-----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG 477 (597)
.+...+|+.++||||+|++|++|++|||.++. ..++++. .++++.++++ +++++.++++|.+|||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~------~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW------DEVKDDLDKAGNALSG 228 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc------chhhhhhhCCcccCCH
Confidence 45678899999999999999999999998642 2444443 3444444432 3567889999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCc
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFG 556 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g 556 (597)
|||||++||||++++|+|||||||||+||+++...+++.|+++.+++|+|+|||++.++.. ||+|+||++|+|+| .|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e--~g 306 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE--AG 306 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE--eC
Confidence 9999999999999999999999999999999999999999999889999999999999987 99999999999998 33
Q ss_pred hhHhhH
Q psy1502 557 FFFSKD 562 (597)
Q Consensus 557 ~y~~l~ 562 (597)
...++.
T Consensus 307 ~~~~l~ 312 (329)
T PRK14257 307 ETKTIF 312 (329)
T ss_pred CHHHHh
Confidence 344443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=383.56 Aligned_cols=206 Identities=25% Similarity=0.403 Sum_probs=188.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
.++++|+++.|. .+.+|+|||++|++++.+|++|||||||||+++.+.|+.+ .+|+|.+||+|+.+. +...
T Consensus 7 ~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 489999999996 4679999999999999999999999999999999999863 269999999999885 7889
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---C----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---K----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+|++||+|+|.|.-|..||+||+++|. . .-||-++++++.|.|||.+... +.+.+..|||||+||+|
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr------L~~sa~~LSGGQQQRLc 159 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR------LHKSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH------hhCCccCCChhHHHHHH
Confidence 999999999999999999999999863 1 1245689999999999988752 44668899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||.-+|+||+||||||||||.+..+|.+.|.++.++-|+|+|||.+....+ +|+...+-.|+++|
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999999999999999999999866 79999999999999
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=379.95 Aligned_cols=202 Identities=25% Similarity=0.380 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC-CChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED-VPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~-~~~~~lr~~I~ 417 (597)
-|+++||+.+|. +..||+||||+|++||.++|+||||||||||+++|.+|. +++|+|.+||.++.. .+...+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 389999999996 456999999999999999999999999999999999998 578999999987743 37888999999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC----CCChHHHH----HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE----KYPDYVLW----TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~----~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+|+..||. -|+.||+..+. ..+.+|.+ +.++++ |+......-..+|||||+||+|||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V----------GL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV----------GLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc----------CchhhhhhCccccCcHHHHHHHHHHH
Confidence 9999999996 79999997642 34444332 233333 33333444567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|.-+|+++++||||||||||.-.+|.+.+.++.+ +.|.|+|||.+...+. ||||+.||+|+|+|
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie 216 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE
Confidence 9999999999999999999999999999998875 6899999999999987 79999999999998
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=395.50 Aligned_cols=202 Identities=30% Similarity=0.395 Sum_probs=174.9
Q ss_pred EEEEeeEEEeCC----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHH
Q psy1502 341 IEFQNTNVRYLS----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~l 412 (597)
|+|+|||+.|+. ...+|+||||+|++|+..||||+||+|||||++++.+|. |++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 799999999965 246999999999999999999999999999999999997 789999999999988874 556
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccC---CCCChHHH----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPF---EKYPDYVL----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|++||+++|++-|++ .|+.+|+++- ...+.+++ .+.++.+ |+.-.-+.-..+||||||||++
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV----------gL~dk~~~yP~qLSGGQKQRVa 151 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV----------GLSDKADRYPAQLSGGQKQRVA 151 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc----------CChhhhccCchhcCcchhhHHH
Confidence 789999999999998 8999999863 23444443 3333333 4444455567899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||..+|+||+.|||||||||+|.+.|.+-|.+.-+ +-|+++|||-++.+++ |||+.||++|+|+|
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 99999999999999999999999999999998876533 7899999999999986 99999999999999
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=391.67 Aligned_cols=216 Identities=51% Similarity=0.797 Sum_probs=201.1
Q ss_pred CcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhc
Q psy1502 337 VLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~ 414 (597)
..+.|+++|++++|+.. +++|+|+||+|++|+.+||+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45789999999999653 579999999999999999999999999999999999985 7899999999999998888999
Q ss_pred CcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
.|+||+|++.+|++|++||+.+.....++++.++++.+++.+++..+ .|+++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875444566788888999999998887 79999999999999999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++|||||||++||++++..+.+.|.++.+++|+|++||+++.+..||+|++|++|++++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~ 234 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE 234 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998877899999999999999999999999999987
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=383.97 Aligned_cols=214 Identities=61% Similarity=0.972 Sum_probs=201.1
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|.|+++|++++|+. ++++|+|+||+|++|+.+||+||||||||||+++|+|++ |.+|+|.+||.++.+.+...+++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 35899999999964 357999999999999999999999999999999999987 5789999999999988888899999
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|+||++.+|++|++||+.+....+.+++.++++..++.+++..+ .|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999876556778899999999999999987 9999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+||||||++||+.+...+.+.|+++.+++|+|++||++..+..||++++|++|++++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence 999999999999999999999999877899999999999999999999999999976
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=386.51 Aligned_cols=212 Identities=35% Similarity=0.537 Sum_probs=196.3
Q ss_pred EEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++||+++|++ .+++|+|+||++++||.++|+|+||||||||+++|+|++ |.+|+|.+||.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 457999999999999999999999999999999999998 578999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+||++.+|+.|++||+.+.. ..+.+++.++++..++.+++..+ .|+++.....+.+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998753 34556777888888889999887 89999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999877899999999999998899999999999987
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=365.94 Aligned_cols=468 Identities=16% Similarity=0.190 Sum_probs=334.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 66 IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145 (597)
Q Consensus 66 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i 145 (597)
+..++++.++..+...+.......+++.+..++|.++.+++++.|+.-+++.+++.++.++++|+..|. +-...++.+.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHH
Confidence 344445555555666677778888999999999999999999999999999999999999999999998 5556777799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH-
Q psy1502 146 QGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL- 224 (597)
Q Consensus 146 ~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~- 224 (597)
++++..+++.+.++|.||.+.++.++.+.+.++...+...+..+..+..++...++.+..+..++|.++++......++
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 9999999999999999999887777666655554444433333333333445556778889999999999987544332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---Hh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 -VEEFDYHQDLHSSTWHLFVYTNMGFA-YLIDFLCLLYLSTILISFFFF---AD-IGGKVGLAVTQTMTLMGVVQWAMRQ 298 (597)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~-~~g~i~~~~~~~~~~~~~~~~~~~~ 298 (597)
.+.|....+...+ .......+. ....+....+.+++.+.++.. .. +......+......+-+|+.+....
T Consensus 210 h~~~~~~~a~~~r~----~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgi 285 (546)
T COG4615 210 HNNLYIPDAQEYRH----HIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGI 285 (546)
T ss_pred HhhhcCcchHHHHh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhh
Confidence 2222221111111 111111111 111111111111111111111 11 1111112222233345677778888
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCC
Q psy1502 299 AAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGA 378 (597)
Q Consensus 299 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGs 378 (597)
+..+.++.++.+++.++-..|+....+.. .+. |.-..||++||.|+|++...=+.-||++|++||.|-|+|.+||
T Consensus 286 lP~l~~AqvA~~kiakle~~~~~a~~~~~--q~~---p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGs 360 (546)
T COG4615 286 LPTLLTAQVAFNKIAKLELAPYKADFPRP--QAF---PDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGS 360 (546)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccCCCC--CcC---CcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCC
Confidence 88899999999999887543332222111 111 2234699999999997655568889999999999999999999
Q ss_pred CHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHH
Q psy1502 379 GKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457 (597)
Q Consensus 379 GKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~f 457 (597)
||||+++||.|+| |++|+|++||.+++.-+++++|+-++-|+-|-+||+.++ -+...++.+.+..-++...+..-
T Consensus 361 GKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~k 436 (546)
T COG4615 361 GKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAHK 436 (546)
T ss_pred cHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhhh
Confidence 9999999999999 688999999999999999999999999999999999876 22123666666655555544332
Q ss_pred HHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchh
Q psy1502 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHT 535 (597)
Q Consensus 458 I~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlst 535 (597)
..-.+|==+ -.+||-|||.|+|+-=|++-+-||++|||=-+-=||.=.+...+.+-.+++ |||++.|||+-..
T Consensus 437 tsl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 437 TSLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred hcccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 211132111 258999999999999999999999999999999999999988877755443 8999999999999
Q ss_pred HhhcCEEEEEeCCeEEE
Q psy1502 536 IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 536 i~~~D~Iivl~~G~Ive 552 (597)
...|||++.|++|+++|
T Consensus 512 F~~ADrll~~~~G~~~e 528 (546)
T COG4615 512 FIHADRLLEMRNGQLSE 528 (546)
T ss_pred hhhHHHHHHHhcCceee
Confidence 99999999999999999
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=370.37 Aligned_cols=205 Identities=28% Similarity=0.407 Sum_probs=177.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+|+|||+.|. ++.+++|+||+|++||.+.++|||||||||++++|.||. |++|+|+|||.|+++++...||++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999996 567999999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch--hhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM--TVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT--~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
-|..-||. .||.|||+.-. .++.+++.+-++ | ...+-|++- ....-...|||||+||+++||||..+|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~-----E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD-----E-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHH-----H-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999995 79999997532 456555433211 1 112235543 233446899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
+||+||||+|||||.|...+|+-+.++.+ ++|+|+|||++... +-+|||.+|++|+|+.
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 99999999999999999999999877654 79999999999887 4599999999999998
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=378.56 Aligned_cols=213 Identities=42% Similarity=0.630 Sum_probs=198.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
+|+++|++++|++.+++|+|+||++++|+.++|+||||||||||+++|+|+. |.+|+|.+||.++.+.+...+|+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 5899999999975457999999999999999999999999999999999987 478999999999998888889999999
Q ss_pred EeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+||++.+|++|++||+.+.. ....+++.++++..++.++.+.+ .|+++.++.....||||||||++|||||+.+|++|
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998753 34566788888889999998887 79999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+++|+|+|||+++.+..||++++|++|++++
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIE 217 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999877899999999999999999999999999986
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=379.45 Aligned_cols=212 Identities=38% Similarity=0.568 Sum_probs=197.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++..++|+|+||+|++|+.+||+||+|||||||+++|+|++ |++|+|.+||.++.+.+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 478999999975567999999999999999999999999999999999998 4789999999999988888899999999
Q ss_pred eCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
+|++.+|++|++||+.++. ..+++++.++++.+++.+++..+ .|+++.+......||||||||++|||||+++|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998753 45667788888888999988887 899999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~ 215 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998877889999999999999999999999999987
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=376.59 Aligned_cols=212 Identities=34% Similarity=0.546 Sum_probs=196.2
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++|+|+||++++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+...+++.|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999653 36999999999999999999999999999999999997 578999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
++|++.+|+.|++||+.++. ..+.+++.++++..++.++++.+ .|+++.++.....||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998753 34556777788888899999887 79999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~ 216 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence 99999999999999999999999888899999999999999999999999999987
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=371.93 Aligned_cols=213 Identities=34% Similarity=0.531 Sum_probs=195.5
Q ss_pred cEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+|+++|++++|++. .++|+|+||+|++|+.+||+||||||||||+++|+|+. |.+|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999643 56999999999999999999999999999999999997 57899999999998888777888999
Q ss_pred EEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|++|++.+|..|++||+.+.. ..+.+++.++++..++.+....+ .|++|.+......||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998753 33556788888999998888877 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999999999876789999999999988899999999999975
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=363.79 Aligned_cols=202 Identities=27% Similarity=0.372 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHH-
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKL- 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~l- 412 (597)
++++||+..|..+ .++|+++||+|++||.+||+||||||||||+++|.++- |++|.|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5799999999533 36999999999999999999999999999999999986 789999999999999984 334
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhccc---CCCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhh-CCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDP---FEKYP----DYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~---~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vg-e~G~~LSGGQrQRI 483 (597)
|++||||+|+..|++ -|++||+.+ ..... .+...+.++.. |+.-... .....||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l----------gl~~~~~~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL----------GLEDRLLKKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc----------CChhhhccCCchhcCHHHHHHH
Confidence 467999999999997 599999973 12222 22233333333 3332233 45679999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||+.+|+|++.||||++||++|.+.|++.+.++.+ ++|+|+|||+......|||++.|+||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998843 689999999999999999999999999643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=381.51 Aligned_cols=468 Identities=19% Similarity=0.216 Sum_probs=325.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChh------HHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSG------RILNRFSKDMGAVDEV 136 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG------~l~~rit~D~~~i~~~ 136 (597)
...+.+|.+++.+...+...+.++...+..+...-|...+.++.+... .||.-...| ..=+|+..|+......
T Consensus 86 ~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~ 164 (604)
T COG4178 86 WQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhh
Confidence 344556666666666666777777777777777778888888888777 444433333 3447999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy1502 137 LPKAMLDAAQGVMQVSGALIVSLSVNPLF---------------SIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPV 201 (597)
Q Consensus 137 ~~~~~~~~i~~~~~~i~~~i~l~~~~~~l---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
.......++.++++++...++++-.+-.+ ..++++..++..++..++.+...++.......++.+
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 77778888888888777777766333322 112222222222222233332222222222233444
Q ss_pred HHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHhhhhH
Q psy1502 202 FTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYL---IDFLCLLYLSTILISFFF-FADIGGK 277 (597)
Q Consensus 202 ~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~ 277 (597)
...+.-.-++...|-.|+.|+.+.++.++........+.........+..+ ...++.++..++..--++ ..+..|.
T Consensus 245 R~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~ 324 (604)
T COG4178 245 RYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGG 324 (604)
T ss_pred HHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHH
Confidence 455666667788899999999988888776665544444433222222221 111111110000000000 0234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeC
Q psy1502 278 VGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKL------EPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL 351 (597)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~------~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~ 351 (597)
+......+.++...+.++...+..+..-.+.+.|+.++.+. +++.+..... ...........|.|+|++..-|
T Consensus 325 lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~nl~l~~p 403 (604)
T COG4178 325 LMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGR-RIDFDDNADHGITLENLSLRTP 403 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccc-cccccccccceeEEeeeeEECC
Confidence 55555566667777788888888888888899999887532 1111110000 0000000135799999999998
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
++...|++.||++++|+.+-|.|+||||||||++.|+|++| -+|+|..-. -+.+-|+||.|++=.||+
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTL 472 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccH
Confidence 88889999999999999999999999999999999999999 579986631 246899999999999999
Q ss_pred HhhcccC--C-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 431 RKNLDPF--E-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 431 ~eNI~~~--~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
||=|+|- . +++|+++.+++.+++|.++++.+++.+.. ..-||||||||||.||.++++|++++|||||||||+
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W----~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW----DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcH----hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 9999873 2 48999999999999999999998665553 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 508 KTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 508 ~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
++|..+.+.+++.+++.|+|.|+||.......++.+.+++
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 9999999999999999999999999998888888777654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=365.21 Aligned_cols=200 Identities=59% Similarity=0.932 Sum_probs=179.3
Q ss_pred CCcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHh
Q psy1502 336 PVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 336 ~~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr 413 (597)
+..+.|+++|++++|+.. .++|+|+||+|++|+.+||+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 445679999999999643 479999999999999999999999999999999999984 789999999999988888889
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|+||||++.+|++|++||+.+....+++++.++++ ++.....|||||+||++||||++.+|
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh-----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999998654444444444332 34567899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 99999999999999999999999999877899999999999998899999999999976
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=364.83 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.+++++|+.+|+. ..||+|+||+|++||+|+||||||||||||+++|.||. |++|+|.++|.++..- ...++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEE
Confidence 3789999999975 67999999999999999999999999999999999997 6889999999998543 468999
Q ss_pred EeCCCCCCC-ccHHhhcccCCCC---C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEKY---P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~~---~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. -|++||+.++-+. + .+.+.++++.+|+.+|- ..-...||||||||+||||||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~----------~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE----------DKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh----------hcCccccChHHHHHHHHHHHHh
Confidence 999999999 5999999875321 2 23455556666555543 3446799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
.+|+||+||||+||||+.|...+|+-+.++.+ ++|+++|||+++..-. +|||+||.+ |+|.+
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~ 213 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE 213 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceee
Confidence 99999999999999999999999999988775 4899999999988764 999999999 56644
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=387.90 Aligned_cols=207 Identities=25% Similarity=0.328 Sum_probs=177.3
Q ss_pred cEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-------
Q psy1502 340 KIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV------- 407 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~------- 407 (597)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 48999999999642 36999999999999999999999999999999999998 4789999999998753
Q ss_pred ---------ChHHHhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCC
Q psy1502 408 ---------PLSKLRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGG 472 (597)
Q Consensus 408 ---------~~~~lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G 472 (597)
....+|++|+||+|+| .+|++|++|||.++. ..+.++..+ .+ .++++. -|++ ...+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~--~~~l~~-~gL~~~~~~~~~ 174 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---LA--KFYLNK-MGLDDSYLERSP 174 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---HH--HHHHHH-cCCChhHhcCCc
Confidence 3567899999999998 799999999998752 234433322 22 233333 3665 5678889
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH-hhcCEEEEEeCCeE
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI-MDSDKVLVMDSGVA 550 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti-~~~D~Iivl~~G~I 550 (597)
.+||||||||++|||||+++|+|||||||||+||+.++..+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|+|
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998764 478999999999987 56999999999999
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
++
T Consensus 255 ~~ 256 (320)
T PRK13631 255 LK 256 (320)
T ss_pred EE
Confidence 98
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=370.20 Aligned_cols=213 Identities=32% Similarity=0.484 Sum_probs=192.9
Q ss_pred cccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc
Q psy1502 338 LGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~ 414 (597)
.+.|+++|++++|++. .++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999642 46999999999999999999999999999999999997 57899999999998888788889
Q ss_pred CcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
.++|++|++.+|++|++||+.++. .....++.+.++...+.++++.+ .|+++.+.+...+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998743 33445556666667788888887 6999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998778899999999999999999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=371.30 Aligned_cols=212 Identities=37% Similarity=0.591 Sum_probs=194.3
Q ss_pred EEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|+++|++++|++ +.++|+|+||++++|+.+||+|+||||||||+++|+|++ |++|+|.+||.++.+.+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 346999999999999999999999999999999999997 57899999999998888878888999
Q ss_pred EEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|++|++.+|+.|++||+.++. ....+++.+.++..++.+++..+ .|+++.++....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998753 33456677778888888888887 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~ 217 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999998877899999999999999999999999999987
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=367.73 Aligned_cols=202 Identities=25% Similarity=0.383 Sum_probs=180.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+++|.|+. |.+|+|++||+|+.+++...+-+++||
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 378999999997 568999999999999999999999999999999999976 578999999999999999999999999
Q ss_pred EeCCC-CCCCccHHhhcccCC-----------CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDP-VLFSGTLRKNLDPFE-----------KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~-~LF~gTI~eNI~~~~-----------~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++ .-|.-|++|=+.+|+ +.+++.+.+|++..++.++.... -..||||||||+.||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~----------~~~LSGGerQrv~iA 150 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP----------VDELSGGERQRVLIA 150 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc----------ccccChhHHHHHHHH
Confidence 99995 566789999886542 11333588889999988875432 347999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
|||.++|+||+||||||+||..+..+|++.++++.+ ++|+|+|.|+++.. +.||++++|++|+|+.
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999998874 59999999999877 5699999999999998
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=390.19 Aligned_cols=202 Identities=28% Similarity=0.361 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|+. ..++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999953 246999999999999999999999999999999999998 57899999999999887654 58
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++|+||||++.+|. .|++||+.+.. ..+.+ ++.++++..++.+ ........||||||||++|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~----------~~~~~~~~LSgGqkQRV~I 151 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD----------KHDSYPSNLSGGQKQRVAI 151 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------hhhCChhhCCHHHHHHHHH
Confidence 89999999999995 79999997531 23332 3444454444433 3344567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+.+|++||||||||+||+++...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998764 6899999999999965 99999999999998
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=357.70 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCC---ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhc
Q psy1502 340 KIEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~---~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~ 414 (597)
.++++|+++.|+.++ ++|+||||+|.+||++||||+||||||||+++|+|+. |.+|+|.+||.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 388999999997654 6999999999999999999999999999999999997 67899999998776643 346788
Q ss_pred CcEEEeCCCC-CCC--ccHHhhcc----cC-CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPV-LFS--GTLRKNLD----PF-EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~-LF~--gTI~eNI~----~~-~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
.|.+|+|||+ =+| .||++=|. .+ -+-..++++++++.+++.+-. .-.....||||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~---------l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF---------LDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH---------HhcCchhcChhHHHHHHHH
Confidence 9999999998 223 46666663 21 123345578888888774322 2345678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCc--EEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC--TVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~--TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||.-+|++||||||||+||.-..+.|.+-+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence 99999999999999999999999999999998887765 99999999999986 99999999999999
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=368.30 Aligned_cols=200 Identities=28% Similarity=0.377 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcC
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~ 415 (597)
|+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999643 46999999999999999999999999999999999998 5789999999999876543 47889
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCC---CC----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFE---KY----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~---~~----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
++||||++.+|. .|++||+.++. .. .++++.++++..++.++ ......+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK----------AHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh----------hhCChhhCCHHHHHHHHHHH
Confidence 999999999987 59999997531 11 12345555555554433 33344689999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999988743 7899999999999875 899999999985
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=361.23 Aligned_cols=196 Identities=27% Similarity=0.410 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcC
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~ 415 (597)
|+++||+++|++. +++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 4799999999654 37999999999999999999999999999999999997 5789999998 6
Q ss_pred cEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+||||+|.+|++|++||+.+....++++..++++.+++.+++..+ .|++|.+++.+..||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999986555666788888888999999887 899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHH-HHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 495 ILVLDEATANVDPKTDLLIQRT-IRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~-l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
++||||||++||+++...+.+. +.+.. .++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998888774 55553 3689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=367.54 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=172.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----c-CCceEEEcceeCCCCC--hHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----E-VEGVIKIDDIDTEDVP--LSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----~-~~G~I~idg~di~~~~--~~~l 412 (597)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ + .+|+|.++|.++...+ ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999964 46999999999999999999999999999999999987 5 6899999999998776 5677
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCC--CCCCChhHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEG--GTNFSVGQRQL 482 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~--G~~LSGGQrQR 482 (597)
+++++||||++.+|+.|++||+.+.. .. . ++++.++++..++.+. .... +..||||||||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE----------VKDRLHALGLSGGQQQR 149 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH----------HhccCCcccCCHHHHHH
Confidence 88999999999999889999997631 11 1 2234444444444332 2223 57999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||+++|++|||||||++||+++...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999876689999999999886 599999999999986
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=369.01 Aligned_cols=201 Identities=26% Similarity=0.381 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr~~I 416 (597)
|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. ..+|+.|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 478999999964 56999999999999999999999999999999999987 578999999999987764 5678999
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||||++.+|.+ |++||+.++. ..+.++ +.++++.. |+..........||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~ia~ 149 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAV----------GLRGAEDLYPAELSGGMKKRVALAR 149 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHc----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 999999999986 9999997631 123322 23333333 3333344455689999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+++|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~ 217 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999998754 7899999999998875 99999999999987
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=378.64 Aligned_cols=200 Identities=29% Similarity=0.422 Sum_probs=176.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+.+|++.. +|+|+||+|++||.++|+||||||||||+++|+||. |++|+|.|||.|+++++++ .+.||+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEEE
Confidence 589999999996544 999999999999999999999999999999999998 5889999999999999987 589999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|+.-||. .|++|||+|+- ..+ ++++.++++..++.+. +......||||||||+||||||.
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l----------L~r~P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL----------LNRKPLQLSGGQRQRVALARALV 149 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH----------HhcCcccCChhhHHHHHHHHHHh
Confidence 999999996 69999999852 222 4456777776666554 44567899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++++||||.|+||++....+...|.++.+ +.|+|.|||+-..+. -+|||.||++|+|.+
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999888887654 579999999988776 599999999999998
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=370.92 Aligned_cols=205 Identities=21% Similarity=0.399 Sum_probs=178.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc----cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA----EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~----~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|+++||++.|++ +++|+|+||++++||.++|+||||||||||+++|+|++ |.+|+|.+||.++.+.+...+|+.|
T Consensus 3 ~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 3 AKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 789999999974 57999999999999999999999999999999999986 3689999999999988888889999
Q ss_pred EEEeCCCCCCCccHHhhcccCC---CC------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE---KY------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~---~~------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+|+||++.+|+.|++||+.++. .. .++++.++++..++.+++. +...+.+.+||||||||++|||
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK------DKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh------HHhcCCcccCCHHHHHHHHHHH
Confidence 9999999999999999997642 11 1223445555555544332 2345667899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++++|++|||||||++||+++...+.+.|.++..++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 99999999999999999999999999999999877899999999999886 599999999999997
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=362.23 Aligned_cols=203 Identities=28% Similarity=0.456 Sum_probs=181.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC-CCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE-DVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~-~~~~~~lr~~I~ 417 (597)
-|+++|++|+|+++.++|+|+||+|++|+.++|+|+||||||||+++|.|+. |++|.|.+||.++. +.+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 3789999999976678999999999999999999999999999999999987 57899999999998 488999999999
Q ss_pred EEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+|+| .+|..||.|.++|+. ..+.++ +.++++.+++.++ ....-.+||||||||+|||.+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~----------~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL----------LDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh----------ccCCccccCCcceeeHHhhHH
Confidence 999999 899999999999873 355554 4555555555544 344567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCC--cEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~--~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|..+|++||||||||+||+.....+.+.+.++.++ +|+|+|||++..+.. ||++++|++|+++.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 99999999999999999999999999999998764 799999999999987 99999999999976
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=364.71 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH----H
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK----L 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~----l 412 (597)
|+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+... +
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 57999999999999999999999999999999999998 57899999999998876432 4
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+++++||||++.+|.+ |++||+.++. ..+.++.. ..+.+.++. -|++........+||||||||++||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLER-VGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHH-cCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 5789999999999986 9999997632 12211111 112233333 255555666678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||++++|++|++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 155 LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999998865 7899999999999989999999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=358.96 Aligned_cols=197 Identities=25% Similarity=0.379 Sum_probs=168.2
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++||+++|++.+++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.+||.++.. ..++++|+|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 46899999964357999999999999999999999999999999999997 578999999998864 45678999999
Q ss_pred CCC--CCCCccHHhhcccCC-C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 421 QDP--VLFSGTLRKNLDPFE-K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 421 Q~~--~LF~gTI~eNI~~~~-~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|++ .+|+.|++||+.++. . ..++++.++++..++.++ .......||||||||++|||||+++|++
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL----------KERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh----------cCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 998 477899999998642 1 123456666666655443 2333458999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999998873 57899999999999975 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=373.64 Aligned_cols=203 Identities=24% Similarity=0.366 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|+..+++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.+.+...++++|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 3899999999975567999999999999999999999999999999999997 578999999999998888888899999
Q ss_pred EeCCC--CCCCccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDP--VLFSGTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~--~LF~gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|||+| .+|..|++||+.++. ..+. +++.++++..++.++ .......||||||||++|||||
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDF----------RDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH----------hcCChhhCCHHHHHHHHHHHHH
Confidence 99998 688999999998642 2222 234444555454433 2333458999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988753 789999999999985 599999999999988
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=359.07 Aligned_cols=199 Identities=28% Similarity=0.357 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++|+|.++ +||+||||+|++|+.+||+||+|||||||+|+|+|+. |.+|+|.++|.+.++... +.+|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 48999999999765 6999999999999999999999999999999999965 789999999998876543 578999
Q ss_pred EeCCC---CCCCccHHhhcccCC-----------CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 419 IPQDP---VLFSGTLRKNLDPFE-----------KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 419 V~Q~~---~LF~gTI~eNI~~~~-----------~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|||.. +=|.-|++|=+.++. ..+.+++.+|++.+++.++... .+| .|||||+||+.
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r------~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR------QIG----ELSGGQKQRVL 149 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC------ccc----ccCcHHHHHHH
Confidence 99954 567889999986542 1235889999999999988543 343 69999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|+|||||+++|+.++..+.+-|.++.. ++|+++|+|+|+.+.. ||+|+.|++..+..
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~ 219 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEec
Confidence 99999999999999999999999999999999998876 7999999999999975 99999999876654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=350.21 Aligned_cols=203 Identities=27% Similarity=0.420 Sum_probs=180.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC---hHHHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP---LSKLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~---~~~lr~~ 415 (597)
.|+++||+..||+++.+|+||||+|++||.|||+||||||||||++.|.|+.+ ++|+|.++|.++...+ +..||++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 48999999999988999999999999999999999999999999999999885 7899999999998887 6778999
Q ss_pred cEEEeCCCCCCC-ccHHhhcccC------------CCCChH---HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPF------------EKYPDY---VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~------------~~~~~e---~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
||+++|++-|-+ .|+.+|+..| .-++.+ +..+|+++.++.|.. ..+..+|||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A----------~qra~~LSGGQ 152 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA----------YQRASTLSGGQ 152 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH----------HHHhccCCcch
Confidence 999999999997 5999998422 123333 466777777776653 34567999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||+||||||.++|+|++=|||+|+|||++.+.|++.|++.. .+.|+|+.-|.+...++ ||||+-|++|+|+-
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 999999999999999999999999999999999999998765 47899999999999975 99999999999997
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=366.21 Aligned_cols=202 Identities=26% Similarity=0.441 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC---hHHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP---LSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~---~~~lr~~I 416 (597)
++++||+++|++++++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999964357999999999999999999999999999999999998 57899999999998876 45678899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCCC------------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFEK------------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~~------------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+||||++.+|. .|++||+.+... .+ ++++.++++. -|++.........||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALER----------VGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHH----------cCChhhhCCCcccCCHHHH
Confidence 99999999887 699999975311 01 1122222222 2455555667789999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+++|+|||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||++++|++|++++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999875 3789999999999998 599999999999987
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=358.76 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=184.5
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHHhcCc
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKLRSNI 416 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~lr~~I 416 (597)
.+.|++|+|+.+.++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. ...|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999976678999999999999999999999999999999999998 578999999999876542 3456789
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++|++.+|+.|++||+.+....++++..++++..++.+++..+ .|++|.++....+||||||||++||||++++|++
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999875445566778888888888888776 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 496 LVLDEATANVDPKTDLLIQR--TIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~--~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
|||||||++||+.+...+.+ .++.+. .+.|+|++||+++.+..||++++|++|.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999988877 344433 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=337.99 Aligned_cols=202 Identities=28% Similarity=0.369 Sum_probs=176.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~I 416 (597)
|+|+||+..|+.++++|+||||+|++||++-++||||||||||++||++.. |+.|+|.++|.|+..+... -+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 799999999988888999999999999999999999999999999999965 8899999999999988754 489999
Q ss_pred EEEeCCCCCCC-ccHHhhcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
|+|+||--|.. -|+.||+++- ...+ .+++.++++.+++.+-. -.-...|||||+||+|||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~----------~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA----------RALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhh----------hcCccccCchHHHHHHHHHH
Confidence 99999999885 5999999863 1223 34466677666665443 33457899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhc-CEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDS-DKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~-D~Iivl~~G~Ive 552 (597)
+..+|++||-||||-+|||++...|++.+.++- .|.||+|.||+.+.+..+ -|++.+++|+++.
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 999999999999999999999999999988764 388999999999999876 6789999999986
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=333.10 Aligned_cols=197 Identities=26% Similarity=0.384 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|.+++|.|+|...+ -..+++|++||++||+||||||||||+|||+||. |.+|+|.|+|+|.....+. ++-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhh
Confidence 56899999996543 3678999999999999999999999999999997 7899999999999887775 6789999
Q ss_pred eCCCCCCC-ccHHhhcccCC----C---CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE----K---YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~----~---~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||.-||. -||++|+.+|- . .+.+++..|+..+|+.+|.+.+ ...||||||||+|+||+|+|
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL----------P~~LSGGqRQRvALARclvR 146 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL----------PGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC----------ccccCchHHHHHHHHHHHhc
Confidence 99999996 69999998752 1 2355688999999998876654 34899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+-|||+||||+|||||.-.++...-+.+++. +.|++||||.++-++. +|+++++++|+|+.
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 9999999999999999999999888887764 5799999999999975 99999999999987
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=359.57 Aligned_cols=199 Identities=29% Similarity=0.414 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. ++++++||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEE
Confidence 478999999964 57999999999999999999999999999999999987 578999999999976543 57889999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|. .|++||+.+.. ..+.+ ++.++++.. |++........+||||||||++|||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrl~la~al~~ 147 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV----------GLEGLLNRYPHELSGGQQQRVALARALAR 147 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc----------CChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 99999886 69999997532 12222 233333333 44444555567899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 148 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999999999998753 7899999999998765 99999999999975
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=372.60 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.|+++||+++|+. .+++|+|+||+|++||++||+|+||||||||+++|+|++ |.+|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 3899999999964 246999999999999999999999999999999999997 5789999999999888888889999
Q ss_pred EEEeCCC--CCCCccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||+|+| .++..|++|||.++. ..+. +++.++++..++.+ .......+||||||||++|||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~LSgGq~qrv~lAr 153 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD----------FKEREPARLSGGQKQRVAIAG 153 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh----------HhhCCcccCCHHHHHHHHHHH
Confidence 9999998 366789999998642 2333 23445555555443 344455799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||++..+..||+|++|++|++++
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~ 220 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVES 220 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998764 789999999999998899999999999987
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=360.49 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
|+++||+++|++ .++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||.++...+...+ +++++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 578999999964 46999999999999999999999999999999999998 478999999999988876654 678999
Q ss_pred EeCCCCCCCc-cHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|||++.+|.+ |++||+.+... ....+..+ .+.+.++.+.+++.........||||||||++||||++++|++|
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 154 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999986 99999976422 11111111 11222222233455556677899999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||++||+++...+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 9999999999999999999998875 47899999999998765 99999999999987
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=363.08 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
++++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+... +|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 8999999999642 46999999999999999999999999999999999997 57899999999998887643 33
Q ss_pred -cCcEEEeCCCCCCCc-cHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 -SNISIIPQDPVLFSG-TLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 -~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+.|+||||++.+|++ |++||+.+. ...+.++..+. +.+.++. .|++........+||||||||++||||
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~-~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-----ALEMLAA-VGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 689999999999975 999999752 12222221111 1122222 355555666678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++.+|+||||||||++||+++...+.+.|.++. +++|+|+|||+++.+..+|++++|++|+|++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999874 4789999999999999999999999999987
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=359.83 Aligned_cols=199 Identities=26% Similarity=0.376 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~I 416 (597)
|+++|++++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 689999999964467999999999999999999999999999999999997 5789999999999887643 467899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+||++.+|. .|++||+.+.. ..+ ++++.++++..++.++ .......||||||||++||||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK----------ADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999996 69999997531 111 2344555555554433 223345899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
|+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999875 37899999999999986 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=364.99 Aligned_cols=202 Identities=29% Similarity=0.432 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr~~I 416 (597)
|+++||+++|+.++++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++..++. ..+|+++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 689999999963457999999999999999999999999999999999998 578999999999987654 3468899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCCC------------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFEK------------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~~------------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+||||++.+|. .|++||+.++.. .. ++++.++++.. |++.........||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV----------GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc----------CcHhhhcCCcccCCHHHH
Confidence 99999999886 699999975321 01 11222222222 455555667789999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+++|++||||||||+||+++...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999999999999999999999999999998753 689999999999985 599999999999987
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=358.93 Aligned_cols=200 Identities=30% Similarity=0.414 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr~~I 416 (597)
|+++|++++|++.+++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. ..+|+.|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999975467999999999999999999999999999999999998 578999999999987764 3478899
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+|. .|++||+.++. ..+.+ ++.++++..++ +.........||||||||++||||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL----------SHKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----------HHHhhCChhhcCHHHHHHHHHHHH
Confidence 99999999998 59999997531 12222 23344444333 333344456899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
++++|+++||||||++||+++...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999874 47899999999999985 899999999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=366.96 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=177.9
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CCh
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPL 409 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~ 409 (597)
.+.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.+||.++.. .+.
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 346999999999964 469999999999999999999999999999999999863 58999999999863 456
Q ss_pred HHHhcCcEEEeCCCCCCCccHHhhcccCC----CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 410 SKLRSNISIIPQDPVLFSGTLRKNLDPFE----KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 410 ~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~----~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
..+|++|+||||++.+|+.|++||+.++. ..+. +++.++++.+++.+. +.....+...+|||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE------VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh------hHHHHhcCCCCCCHHHHH
Confidence 67889999999999999999999997631 1222 234455555544322 234456778899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+++|+||||||||++||+.+...+.+.|.++.+++|+|+|||++..+. .||++++|++|++++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999877789999999999986 599999999999987
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=359.26 Aligned_cols=205 Identities=25% Similarity=0.352 Sum_probs=171.3
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|++. +++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 46999999999999999999999999999999999987 57899999999998877544 34
Q ss_pred -cCcEEEeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 -SNISIIPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 -~~I~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+.|+||+|++.+|+ .|++||+.+. ...+.++..+. +.++++. -|++.........||||||||++||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEK-VGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 68999999999996 6999999752 12222211111 1122222 355555666678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Iv 551 (597)
++++|+||||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|+++
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998753 68999999999999999999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=366.02 Aligned_cols=206 Identities=22% Similarity=0.354 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
-|+++|++++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 4899999999964 569999999999999999999999999999999999985 37999999999864 34556
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---C-CC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---K-YP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~-~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|+.|++|||.++. . .+ ++++.++++.+++.+.+. ........+||||||||+
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK------DKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH------HHHhCCcccCCHHHHHHH
Confidence 789999999999999999999997642 1 11 234555555555533322 123345789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998778899999999999855 99999999999987
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=366.68 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=176.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||+++.. .+...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 3899999999964 56999999999999999999999999999999999985 258999999999875 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|+.|++||+.++. .. . ++++.++++.+++.+++ .+.......+||||||||+
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV------KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh------hHHhhCCcccCCHHHHHHH
Confidence 789999999999999999999997531 11 1 23445555555554332 2345666789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|+|++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877889999999999985 599999999999987
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=359.24 Aligned_cols=201 Identities=24% Similarity=0.376 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|+++||+++|++. +++|+|+||+|++|+.+||+|+||||||||+++|+|++ |++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 6899999999643 16999999999999999999999999999999999997 578999999999975 456778999
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+||++.+|.+ |++||+.+.. ..+.+ ++.++++.. |++.........||||||||++||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL----------GMEELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCHHHHhhhhhhcCHHHHHHHHHHHH
Confidence 999999999985 9999997521 12222 233333333 45555566778999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999998875 37899999999998865 99999999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=358.60 Aligned_cols=201 Identities=21% Similarity=0.343 Sum_probs=171.0
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++||+++|++. +++|+|+||++++|+.+||+||||||||||+++|+|++ |++|+|.+||.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 5789999999643 57999999999999999999999999999999999997 5789999999998764 3567889999
Q ss_pred EeCCCCCC-CccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLF-SGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF-~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+| +.|++||+.+.. ..+.+ ++.++++.. |++.........||||||||++||||++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVL----------GLTDKANKRARTLSGGMKRKLSLAIALI 149 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 99999999 579999997531 22222 233333333 3333334445689999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+.. ||++++|++|++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 212 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC 212 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999999998778999999999999865 99999999999987
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=356.52 Aligned_cols=199 Identities=28% Similarity=0.445 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+|+|++ .++|+|+||++++| .+||+||||||||||+++|+|++ |++|+|.++|.++.+.+ ..++++++||
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 579999999964 46999999999999 99999999999999999999987 57899999999998776 6788999999
Q ss_pred eCCCCCCCc-cHHhhcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|.+ |++||+.+. ...+ ++++.++++..++.++ .......||||||||++||||+++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR----------AKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH----------HhCchhhCCHHHHHHHHHHHHHhc
Confidence 999999986 999999752 1222 2334555555555433 223446899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+. .||++++|++|++++
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999877899999999999996 499999999999975
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=362.24 Aligned_cols=210 Identities=24% Similarity=0.375 Sum_probs=174.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+ ++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 478999999964 56999999999999999999999999999999999987 478999999999988876554 578999
Q ss_pred EeCCCCCCCc-cHHhhcccCCC-CChHHH-------HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEK-YPDYVL-------WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i-------~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|||++.+|.+ |++||+.++.. .....+ ........+.++++. -|++.........||||||||++|||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLER-VGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHH-cCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999986 99999976321 100000 000011122344443 3666667777889999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999998875 57899999999999965 99999999999987
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=364.13 Aligned_cols=205 Identities=26% Similarity=0.395 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cC-----CceEEEcceeCCCC--ChHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EV-----EGVIKIDDIDTEDV--PLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~-----~G~I~idg~di~~~--~~~~l 412 (597)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ |+ +|+|.+||.++... +...+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999964 46999999999999999999999999999999999987 45 89999999999763 45667
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---C-CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---K-YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~-~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+++|+||||++.+|+.|++||+.+.. . .+. +++.++++..++.+++. .........||||||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK------DRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh------hHhhCCcccCCHHHHHHHH
Confidence 88999999999999999999997531 1 121 23344444444432221 3455667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999877789999999999886 499999999999987
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=354.72 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=172.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||++++|+.++|+||||||||||+++|+|+. |++|+|.+||.++... ..++++++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 478999999964 57999999999999999999999999999999999987 5789999999998764 5678899999
Q ss_pred eCCCCCC-CccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+| +.|++||+.+.. ..+++++.++++..++.+.. ......||||||||++||||++++|++
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA----------KKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH----------hhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999888 579999997531 23455666777766665443 334568999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++. .++|+|++||++..+.. ||++++|++|++++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999998875 47899999999999865 99999999999975
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=356.38 Aligned_cols=198 Identities=28% Similarity=0.436 Sum_probs=169.0
Q ss_pred EEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 342 ~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+++||+++|++. +++|+|+||++++|+.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+...++++|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642 56999999999999999999999999999999999987 5789999999999888888889999999
Q ss_pred eCCC--CCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 420 PQDP--VLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 420 ~Q~~--~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
||++ .+++.|++||+.+.. ..+.. ++.++++.. |++..+......||||||||++|||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV----------GLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 9998 467889999997631 12222 222333333 4444455666899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999988754 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=360.65 Aligned_cols=202 Identities=31% Similarity=0.455 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4899999999964 56999999999999999999999999999999999987 578999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCCCC---ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKY---PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~---~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||++.+|+.|++||+.+.... .++++.+.++.. |++ .........||||||||++||||++++|+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV----------GLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHc----------CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999864211 122333333333 333 23455677999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999998753 7899999999999875 99999999999987
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=379.49 Aligned_cols=201 Identities=27% Similarity=0.384 Sum_probs=173.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+++.++|+|+||+|++||.+||+||||||||||+++|+|+. |++|+|.+||.++.+.++. ++.|+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 3899999999954567999999999999999999999999999999999997 5789999999999887764 579999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++|||.++. ..+. +++.++++..++.++ .......||||||||+||||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL----------LDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH----------hhCChhhCCHHHHHHHHHHHHHh
Confidence 999999995 69999998742 2232 234455555555443 44455699999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999988765 689999999999775 599999999999987
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=376.93 Aligned_cols=206 Identities=28% Similarity=0.379 Sum_probs=173.8
Q ss_pred EEEEeeEEEeC--C-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYL--S-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~--~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|+ + .+++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996 2 357999999999999999999999999999999999997 57899999999998887654 47
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
++|+||||++.+|. .|++||+.++. ..+.++..+. +.+.++. -|++.........||||||||++|||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~-~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR-----VTELLEL-VGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999999996 69999997631 2333322211 1222222 2444445556679999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~ 221 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998754 6899999999999875 99999999999997
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=368.38 Aligned_cols=206 Identities=28% Similarity=0.455 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC--hHHHh
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP--LSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~--~~~lr 413 (597)
|+++||+|+|+.. +++|+||||+|++||++||+||||||||||+++|+|+. |.+|+|.+||.++.+.+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999642 46999999999999999999999999999999999987 57899999999998754 45778
Q ss_pred cCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc--hhhhCCCCCCChhHHHHHHHH
Q psy1502 414 SNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN--MTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 414 ~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld--T~vge~G~~LSGGQrQRIaIA 486 (597)
++|+||||+| .+|+.|++|||.++. ..+.++..+.++ +.++. -|++ +........||||||||++||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~-~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK-----RAMNI-VGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHH-----HHHHH-cCCCchhhccCCcccCCHHHHHHHHHH
Confidence 9999999998 688999999998642 234443322211 11111 2443 445666789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988754 789999999999985 599999999999997
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=344.82 Aligned_cols=174 Identities=35% Similarity=0.575 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++|+|+||+|++||.++|+||||||||||+++|+|+++ .+|+|.+||.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 5789999999654 479999999999999999999999999999999999974 689999999998766 6678899999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++.+|+.|++||+ ...||||||||++||||++++|++|||
T Consensus 80 ~~q~~~~~~~tv~~~i-------------------------------------~~~LS~G~~qrv~laral~~~p~~lll 122 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-------------------------------------GRRFSGGERQRLALARILLQDAPIVLL 122 (178)
T ss_pred EccCCeeecccHHHhh-------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998 568999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||++||+.+...+.+.|.++.+++|+|++||++..+..||++++|++|++++
T Consensus 123 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 123 DEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred ECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999998877899999999999999999999999999975
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=358.31 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---HHHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL---SKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~---~~lr 413 (597)
|+++||+++|++. .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999654 27999999999999999999999999999999999998 578999999999988774 5778
Q ss_pred cCcEEEeCCC--CCC-CccHHhhcccC----C-CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHH
Q psy1502 414 SNISIIPQDP--VLF-SGTLRKNLDPF----E-KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 414 ~~I~~V~Q~~--~LF-~gTI~eNI~~~----~-~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIa 484 (597)
++++|++|++ .++ +.|++||+.++ . ...+++..+++ .+.++. .|+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVG-VGLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHH-CCCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 57999999642 1 11111111111 122222 2453 4567777899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999998764 789999999999987 599999999999975
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=359.91 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. .+++++||
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEE
Confidence 789999999965 57999999999999999999999999999999999998 578999999999876553 36789999
Q ss_pred eCCCCCCC-ccHHhhcccCCC---C----ChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK---Y----PDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~---~----~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||++.+|. .|++||+.++.. . +.+ ++.++++.. |++.........||||||||++|||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV----------QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc----------CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999996 699999986421 1 111 122222222 4544455666799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+++|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999999999999999999998754 6899999999998764 99999999999987
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=365.04 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=177.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+++|++ +++|+|+||+|++|+.++|+|+||||||||+++|+|+++ ++|+|.+||.++.. .+..
T Consensus 18 ~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 18 IKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred ceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 46999999999964 569999999999999999999999999999999999874 58999999999875 3456
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
.+|+.|+||+|++.+|++|++||+.++. .. + ++++.++++..++.+++ ..........|||||||
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV------KDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh------hHHhhCCcccCCHHHHH
Confidence 7889999999999999999999997531 11 1 22344555555543322 22445667899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999877889999999999995 489999999999987
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=368.10 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=174.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
-|+++||+|+|+.++++|+|+||+|++||.+||+|+||||||||+++|+|++ |.+|+|.+||.++. ..+...+|+.|
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 3899999999964567999999999999999999999999999999999997 57899999999984 34456788999
Q ss_pred EEEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||||++ .+|+.|++||+.++. ..+.++ +.++++.. |++........+||||||||++|||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRT----------GIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC----------CChhhhhCCcccCCHHHHHHHHHHH
Confidence 9999998 678999999997631 233332 33333333 4444455667899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||+.+|+||||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988764 789999999999997 599999999999988
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=352.74 Aligned_cols=202 Identities=27% Similarity=0.328 Sum_probs=171.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHH---HhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSK---LRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~---lr~~I 416 (597)
|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++..++... +|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 7899999999545679999999999999999999999999999999999985 7899999999998776543 68899
Q ss_pred EEEeCCCCCC-CccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLF-SGTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF-~gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+| +.|++||+.+. ...+.++ +.++++..+ ++.........||||||||++||||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVG----------LLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcC----------ChhhhhCCchhCCHHHHHHHHHHHH
Confidence 9999999874 67999999763 1233333 233333333 3333444567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++++|++|||||||++||+++...+.+.|.++. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999874 36899999999999976 89999999999976
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=363.69 Aligned_cols=206 Identities=28% Similarity=0.349 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC------CceEEEcceeCC--CCChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDIDTE--DVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------~G~I~idg~di~--~~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++++ +|+|.+||.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 3899999999964 5699999999999999999999999999999999999743 899999999997 455667
Q ss_pred HhcCcEEEeCCCCCCCc-cHHhhcccCC---CC--Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 412 LRSNISIIPQDPVLFSG-TLRKNLDPFE---KY--PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~g-TI~eNI~~~~---~~--~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
+|++++||||++.+|.+ |++||+.++. .. +. +++.++++..++.+++ ..........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV------KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch------hhhhccChhhCCHHHHH
Confidence 88999999999999975 9999997531 11 22 2334444444433222 23345667899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998777999999999999865 99999999999987
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=341.23 Aligned_cols=170 Identities=35% Similarity=0.600 Sum_probs=160.3
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++++|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+++...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999643 46999999999999999999999999999999999998 478999999999999988889999999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++.+|++|++||+ ||||||||++||||++++|++|||
T Consensus 81 ~~q~~~~~~~tv~~~l----------------------------------------LS~G~~qrv~la~al~~~p~~lll 120 (173)
T cd03246 81 LPQDDELFSGSIAENI----------------------------------------LSGGQRQRLGLARALYGNPRILVL 120 (173)
T ss_pred ECCCCccccCcHHHHC----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 121 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 121 DEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999988754 7899999999999999999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=355.86 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=166.8
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
|+++|++++|++. +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 4789999999642 57999999999999999999999999999999999987 578999999998863 46789
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+|. .|++||+.+.. ..+ ++++.++++.. |++.........||||||||++||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrl~la~a 145 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV----------GLSGFENAYPHQLSGGMRQRVALARA 145 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 99999999997 69999997531 122 12233334433 34444445557899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEe--CCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMD--SGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~--~G~Ive 552 (597)
|+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|+ +|++++
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999999999999999999998874 3789999999999875 599999999 799987
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=372.68 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=177.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+.+|. +..+++|+||+|++||.+++.||||||||||+++|+||. |++|+|.+||.|+.+++++ ++.|++
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~ 81 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGM 81 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccce
Confidence 589999999997 567999999999999999999999999999999999998 6889999999999999887 789999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC----CChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK----YPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~----~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|+|+--||. .||+|||.|+-. ..++ ++.++++.+++.+|- ......|||||+||+||||||
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~----------~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA----------DRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh----------hhChhhhChHHHHHHHHHHHh
Confidence 999999995 899999998622 2323 567777777776653 345679999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
..+|++|+||||.||||.+-...++..++++.+ +.|.|+|||+-+.. .-+|||.||++|+|..
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 999999999999999999999999988877654 78999999997776 5689999999999988
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=354.05 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++...+.. +++++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 478999999965 57999999999999999999999999999999999997 5789999999999766543 5789999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|. .|++||+.++. ..+.++ +.++++.. |++.........||||||||++||||+++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL----------QIEHLLDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCHHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999995 69999997631 122222 23333333 44444555667999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 9999999999999999999999999998753 7899999999998875 99999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=361.00 Aligned_cols=207 Identities=25% Similarity=0.430 Sum_probs=175.7
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++.+ .+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 35899999999964 469999999999999999999999999999999999853 48999999999875 4556
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
.+|+.|+||+|++.+|+.|++||+.++. .. + ++++.++++.+++.+. +..........||||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE------VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh------hHHHHhcCCCCCCHHHHHH
Confidence 7889999999999999999999997632 11 1 2234444444444322 2234456678999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998778999999999998865 99999999999987
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=360.34 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=174.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++.+++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999964256999999999999999999999999999999999997 4789999999999988888888999999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch--hhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM--TVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT--~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||++.+|. .|++||+.++. ..+.++. ...+.+.++.+ |++. .......+||||||||++||||++++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l-~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV-GLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc-CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999996 69999997532 1221111 11122333332 4443 456677899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998753 789999999999875 599999999999987
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=365.53 Aligned_cols=206 Identities=27% Similarity=0.418 Sum_probs=175.2
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~ 411 (597)
|+++||+|+|+.. +++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999632 36999999999999999999999999999999999987 5789999999999764 3457
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaI 485 (597)
+|++||||||+| .+|+.|++|||.++. ..+.++..+.+ .+.++. -|+++ .......+||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~-~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMD-LGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHH-cCCChhhhhCCcccCCHHHHHHHHH
Confidence 889999999997 689899999998742 23433333221 223332 47764 4566788999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999875 3789999999999885 589999999999997
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=340.60 Aligned_cols=206 Identities=27% Similarity=0.425 Sum_probs=175.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~ 415 (597)
-|++++|+++|. ++.||+||||+|++||.++|+||||||||||+++|.|+. |++|+|.++|.|+.+++.+ .+|++
T Consensus 8 ~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 499999999995 457999999999999999999999999999999999987 6899999999999999864 46899
Q ss_pred cEEEeCCCCCCCc-cHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhC-CCCCCChhHHHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE-GGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge-~G~~LSGGQrQRIaIARAl 489 (597)
+|+++|+.-||+. ||+||+.+- .+.+++++++.+. .. + ++-|+...+.+ -...||||++.|.|||||+
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~-~K----L-~~VGL~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL-MK----L-ELVGLRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHH-HH----H-HhcCCChhhhhhCchhhcchHHHHHHHHHHH
Confidence 9999999999975 999999862 2455555544321 00 1 11455555333 2578999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.-||+|+++|||||+|||.+...+-+-|.++.. +.|+|+|||++.++.. |||++++.||+|+-
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 999999999999999999999988888877654 7899999999999976 79999999999987
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=357.49 Aligned_cols=204 Identities=24% Similarity=0.408 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+... +++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 689999999964 56999999999999999999999999999999999998 57899999999998776544 4589999
Q ss_pred eCCCCC-CCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVL-FSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+ +..|++||+.+.. ..+.++..+ .+.++++. .|++.........||||||||++||||++++|++
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLAR-LGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999988 4689999997532 222222111 12233333 3666667777889999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++. .++|+|++||+++.+..||+|++|++|++++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLA 212 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999875 3789999999999998899999999999987
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=357.72 Aligned_cols=202 Identities=31% Similarity=0.402 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH---HHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS---KLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~---~lr 413 (597)
|+++|++++|++. +++|+|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999653 279999999999999999999999999999999999985 789999999999877654 347
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+.|+|+||++.+|. .|++||+.+.. ..+. +++.++++.. |++.........||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV----------GLEDKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC----------CChhhhhcChhhCCHHHHHHHHH
Confidence 89999999999997 69999997531 1222 2233333333 44444555667999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred HHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998753 7899999999999865 99999999999987
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=365.61 Aligned_cols=202 Identities=25% Similarity=0.394 Sum_probs=175.7
Q ss_pred EEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++||+++|++ .+++|+|+||+|++||.+||+||||||||||+++|+|+. |++|+|.+||.++...+...+++.|+|
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 899999999964 457999999999999999999999999999999999987 578999999999998888788899999
Q ss_pred EeCCC--CCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDP--VLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~--~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|+|++ .+++.|++|||.++. ..+.+ ++.++++..++.+ .+......||||||||++|||||
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED----------FLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh----------hhhCCcccCCHHHHHHHHHHHHH
Confidence 99998 567889999998641 22332 2444444444443 34445569999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.+|+||||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~ 220 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILE 220 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999998864 689999999999999999999999999987
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=354.85 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---H
Q psy1502 340 KIEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---L 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---l 412 (597)
.|+++||+++|++. .++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 48999999999643 35999999999999999999999999999999999997 57899999999998877643 2
Q ss_pred -hcCcEEEeCCCCCCCc-cHHhhcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 -RSNISIIPQDPVLFSG-TLRKNLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 -r~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++.++|+||++.+|.+ |++||+.+. ...+ .+++.++++..++.+ .+......||||||||+
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK----------RLDHLPAQLSGGEQQRV 155 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------HhhCChhhCCHHHHHHH
Confidence 3689999999999985 999999752 1222 223444444444433 33344568999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+..||++++|++|++++
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999988743 689999999999998999999999999976
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=362.05 Aligned_cols=202 Identities=24% Similarity=0.414 Sum_probs=172.2
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 35999999999964 569999999999999999999999999999999999863 68999999999863 4567
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCCC---CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEK---YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
.+|+.|+||||++.+|..|++||+.++.. .. ++++.++++.+++.+ +++.........||||||||++
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD------ECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc------hhhhhhCCCcccCCHHHHHHHH
Confidence 78899999999999999999999986421 11 233444455444432 2334455667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeC
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDS 547 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~ 547 (597)
|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||++..+. .||++++|++
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999999999999999999999877889999999999885 5999999997
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=360.71 Aligned_cols=206 Identities=22% Similarity=0.336 Sum_probs=174.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---c---CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---E---VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~---~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ | .+|+|.+||.++... +...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 3899999999964 56999999999999999999999999999999999984 3 379999999998653 3456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.++||||++.+|+.|++||+.++. ... ++++.++++.+++.++ +.+........||||||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE------VKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh------HHHHHhcCcccCCHHHHHHH
Confidence 788999999999999999999997531 111 1233444444444322 22345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877799999999999876 599999999999987
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=365.05 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----CChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----VPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----~~~~~ 411 (597)
|+++||+|+|+.. +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999632 25999999999999999999999999999999999987 578999999999863 34567
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||+|+| .+|+.|+.||+.++. ..+.+++.+.+ .+.++. -|++ .........||||||||++|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~-~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-----AEKLEM-VGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHH-----HHHHHH-cCCChhhccCCcccCCHHHHHHHHH
Confidence 899999999998 799999999998752 23333322111 122221 2443 23456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998875 3789999999999885 599999999999998
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=360.36 Aligned_cols=206 Identities=26% Similarity=0.349 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChHHHh
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~~lr 413 (597)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++.+.+...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 3899999999964 569999999999999999999999999999999999874 489999999999888888899
Q ss_pred cCcEEEeCCCCCC-CccHHhhcccCC---CC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 414 SNISIIPQDPVLF-SGTLRKNLDPFE---KY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 414 ~~I~~V~Q~~~LF-~gTI~eNI~~~~---~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+.|+||||++.+| +.|++||+.++. .. . ++++.++++..++.+++ +.........||||||||+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV------KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch------hhhhcCCcccCCHHHHHHH
Confidence 9999999999755 679999997531 11 1 23345555555543322 1233455678999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+++|+||||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999999877899999999999985 599999999999987
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=350.22 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC--CChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED--VPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~--~~~~~lr~~I~ 417 (597)
|+++||+++|++ +++|+|+||++++|+++||+||||||||||+++|+|+++ ++|+|.+||.++.. .+...++++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999965 569999999999999999999999999999999999984 78999999999853 34566789999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
||||++.+|. .|++||+.++. ..+.++..+. +.+.++. .|++..+......||||||||++||||++++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEK-VGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHH-cCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 9999999996 69999997631 2232222111 1222322 2555556666789999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|+|
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999998754 6899999999999965 999999999985
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=361.37 Aligned_cols=206 Identities=22% Similarity=0.359 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.+||+++.. .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 3899999999964 579999999999999999999999999999999999873 58999999999864 34556
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCCh-----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYPD-----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~-----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.++||+|++.+|+.|++||+.++. ...+ +++.++++..++++. ..........+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE------TKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc------hHHHhccChhhCCHHHHHHH
Confidence 788999999999999999999997531 1111 223333333333211 11234566789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998778999999999999865 99999999999987
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=361.00 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=174.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc---cc---CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL---AE---VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l---~~---~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++|+++.|++ +++|+|+||+|++||.+||+||||||||||+++|+|+ ++ ++|+|.+||.++... +...
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 4899999999964 5699999999999999999999999999999999997 34 379999999998764 3457
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++++|+||||++.+|+.|++||+.++. ... . +++.++++..++.++ +++.....+..||||||||+
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE------VKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc------hhhhhhCCcccCCHHHHHHH
Confidence 788999999999999999999997531 111 1 223334443333222 23445677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999985 599999999999987
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=360.53 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=174.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
-|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 12 ~l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 4899999999964 469999999999999999999999999999999999863 38999999999864 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC----CChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK----YPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~----~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|++|++||+.++.. .++++ +.++++..++.+++ ..........||||||||+
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV------KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------hhhhhCCcccCCHHHHHHH
Confidence 7899999999999999999999976421 12222 33334444433222 2345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999986 599999999999987
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=361.52 Aligned_cols=206 Identities=23% Similarity=0.393 Sum_probs=176.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||++++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 20 ~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 20 ALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 5999999999964 679999999999999999999999999999999999873 58999999999864 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||||++.+|.+|++||+.++. .. + ++++.++++..++.+++ ++..+.....||||||||+
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i------~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV------KDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh------hhhhcCCcccCCHHHHHHH
Confidence 788999999999999999999997631 11 1 22344445555543332 3445677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+.+...+.+.|.++.++.|+|+|||+++.+. .||+|++|++|++++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999885 599999999999998
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=362.52 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=175.3
Q ss_pred cEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++|++++|+ +++++|+|+||+|++||.++|+||||||||||+++|+|+++ .+|+|.+||.++...+...+|++|+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 489999999996 35679999999999999999999999999999999999984 7899999999998887788899999
Q ss_pred EEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||||++ .+++.|++||+.++. ..+.++ +.++++.. |++..+.....+||||||||++||||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LS~G~~qrl~lara 156 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV----------GMEDYLDKEPQNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc----------CCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 999998 456789999998631 233333 23333333 44444556678999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|+++|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||++++|++|++++
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA 222 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 489999999999998999999999999987
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=352.44 Aligned_cols=193 Identities=32% Similarity=0.417 Sum_probs=162.6
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++. .+|++++|||
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 36899999964 56999999999999999999999999999999999987 57899999998874 4688999999
Q ss_pred CCCCC---CCccHHhhcccCCCC-----------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 421 QDPVL---FSGTLRKNLDPFEKY-----------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 421 Q~~~L---F~gTI~eNI~~~~~~-----------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|++.+ |+.|++||+.+.... .++++.++++..++.+ .......+||||||||++||
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE----------LADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH----------HHhCCcccCCHHHHHHHHHH
Confidence 99987 668999999753210 1223444444444433 33344568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
|||+.+|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|.+
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 99999999999999999999999999999998875 57899999999999865 899999998744
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=362.42 Aligned_cols=202 Identities=30% Similarity=0.475 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~~I~~ 418 (597)
|+++||+++|++++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.++|.++...+ ...+++.|+|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999965567999999999999999999999999999999999987 57899999999998765 3567889999
Q ss_pred EeCCCC--CCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 419 IPQDPV--LFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 419 V~Q~~~--LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
|||+|. +++.|++|||.++. ..+.++ +.++++.. |++.........||||||||++|||||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI----------GLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC----------CCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 999985 67789999998642 123222 23333332 454455566789999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.+|+||||||||++||+.+...+.+.|+++.. ++|+|++||+++.+..||+|++|++|++++
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~ 215 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL 215 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988753 789999999999998899999999999987
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=355.33 Aligned_cols=203 Identities=27% Similarity=0.401 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++...+... +++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 478999999974 46999999999999999999999999999999999998 57899999999998877654 4678999
Q ss_pred EeCCCCCCCc-cHHhhcccCC-C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE-K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~-~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||++.+|.+ |++||+.++. . ...++. ..+.+..+++++.........||||||||++||||++++|+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 9999997532 1 111111 11222222334445566677999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998764 6899999999999985 99999999999987
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=348.74 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=167.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++. . .|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++...+. .++.++|+
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 5789999999642 2 39999999999999999999999999999999984 78999999999987654 36789999
Q ss_pred eCCCCCCCc-cHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|.+ |++||+.+... .+++++.++++..++.++ .......||||||||++||||+++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL----------EKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH----------HhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999975 99999975321 123345555555555443 333446899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999999999999999999998753 7899999999999965 99999999999975
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=362.07 Aligned_cols=207 Identities=26% Similarity=0.379 Sum_probs=177.4
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+|+|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.+||.++.. .+..
T Consensus 24 ~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 45999999999964 569999999999999999999999999999999999974 48999999999875 3456
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
.+|+.++|+||++.+|++|++||+.++. .. . ++++.++++.+++.+++ .+..+..+..||||||||
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV------KDRLHENAFGLSGGQQQR 176 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH------HHHhhCCcccCCHHHHHH
Confidence 7889999999999999999999997531 11 1 12345555555543332 234567788999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|+|++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877899999999999986 599999999999987
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=371.63 Aligned_cols=200 Identities=28% Similarity=0.361 Sum_probs=172.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||.++.+.++ .+++|+|
T Consensus 6 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 5899999999964 569999999999999999999999999999999999984 78999999999987765 3689999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. .|++|||.++- ..+.+ ++.++++..++. .........||||||||+||||||+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~----------~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA----------GFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc----------hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999996 59999998742 23333 344444444443 3334456789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|+|++
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988765 689999999999985 599999999999998
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=357.46 Aligned_cols=206 Identities=24% Similarity=0.404 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC------CceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+|+|++ +++|+|+||+|++|+.+||+||||||||||+++|+|++++ +|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~~-~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECC-eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4899999999964 5699999999999999999999999999999999999853 59999999998653 4567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.++||||++.+|+.|++||+.+.. ... . +.+.++++..++.++ ++......+.+||||||||+
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE------VKDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh------hhhHhhCCcccCCHHHHHHH
Confidence 889999999999999999999997642 111 1 223333444444332 23445677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 9999999999999999999999999999999999988667999999999999876 79999999999987
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=354.86 Aligned_cols=205 Identities=25% Similarity=0.384 Sum_probs=173.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
|+++||+++|++ +++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+ ++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 478999999964 56999999999999999999999999999999999987 578999999999988776554 568999
Q ss_pred EeCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||++.+|.+ |++||+.++. ....++..+ .+.++++. -|++.........||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEE-FHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 9999997531 122222111 12233333 366666677788999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999988754 789999999998775 599999999999987
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=356.99 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=169.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++. .++++++|
T Consensus 12 ~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEE
Confidence 4999999999964 57999999999999999999999999999999999997 57899999998763 46789999
Q ss_pred EeCCCCCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|+|++.+|+ .|++||+.++. ...++++.++++..++ +.........||||||||++|||||+++|++|
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl----------~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGL----------ADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCC----------hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999997 69999998642 2123444555554444 33445566799999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998864 3689999999999885 599999999999987
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=360.59 Aligned_cols=204 Identities=26% Similarity=0.440 Sum_probs=172.3
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCC--hHHHh
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVP--LSKLR 413 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~--~~~lr 413 (597)
+++||+|+|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.++|.++.+.+ ...+|
T Consensus 7 ~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 6899999996 3579999999999999999999999999999999999863 4899999999987653 34578
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCC---CC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFE---KY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~---~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+.++||||++.+|++|++||+.++. +. . ++++.++++..++.++ +.+.++..+..||||||||++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~Gq~qrv~ 159 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE------LGDRLKDSAFELSGGQQQRLC 159 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch------hhhHhhcChhhCCHHHHHHHH
Confidence 8999999999999999999997531 11 1 1223344444443221 123456677899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988778999999999999865 99999999999987
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=360.31 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCC--hHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVP--LSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~--~~~ 411 (597)
.|+++|+++.|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++...+ ...
T Consensus 12 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 5999999999964 569999999999999999999999999999999999874 5899999999986532 446
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+|+.++||||++.+|+.|++||+.+.. ..+.+ ++.++++.+++.++ .+.........||||||||++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE------TSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc------hhhhhcCChhhCCHHHHHHHH
Confidence 788999999999999999999997531 22322 23344444433221 123345567799999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|+|||++..+.. ||+|++|++|++++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988778999999999999865 99999999999987
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=357.83 Aligned_cols=207 Identities=24% Similarity=0.378 Sum_probs=175.1
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~ 410 (597)
+.|+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++... +..
T Consensus 3 ~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 45899999999964 569999999999999999999999999999999999863 379999999998653 445
Q ss_pred HHhcCcEEEeCCCCCCC-ccHHhhcccCC---C-CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 411 KLRSNISIIPQDPVLFS-GTLRKNLDPFE---K-YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~-~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
.+|+.|+||||++.+|. .|++||+.++. . .+. +++.++++..++.+++. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK------DRLKSNAMELSGGQQQ 155 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh------HHhhCCcCcCCHHHHH
Confidence 67889999999999998 69999997531 1 121 23444444544433322 2344567899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|+|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887899999999999985 599999999999987
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=363.35 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----CChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----VPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----~~~~~ 411 (597)
|+++||+|+|+.. .++|+||||+|++||.+||+||||||||||+++|+|+. |++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 46999999999999999999999999999999999987 578999999999864 34567
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||||+| .+|+.|++|||.++. ..+.++..+.+ .+.++. -|++ .........||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~-~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKA-----REMIEL-VGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-CCCChhhhhCCcccCCHHHHHHHHH
Confidence 788999999998 688999999998642 23433332211 122222 2443 22355677999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988753 789999999999985 599999999999987
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=357.04 Aligned_cols=199 Identities=29% Similarity=0.403 Sum_probs=179.2
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.+.|+++|+++. .+++|+|+||+|++|+++||+|+||||||||+++|+|+++ .+|+|.+|| .|
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 456999999995 3569999999999999999999999999999999999985 689999988 39
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++|++.+|++|++||+.++....+.++.++++.+++.+++..+ .+++|.+++.+..||||||||++|||||+++|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875444445667777888888888887 8899999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHH-HHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.+ ..+..+.|+|+|||++..+..||++++|++|++++
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999888754 55656899999999999999999999999999987
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=361.21 Aligned_cols=206 Identities=22% Similarity=0.409 Sum_probs=173.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.++|.++.. .+...
T Consensus 21 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeCC-ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 4899999999964 56999999999999999999999999999999999974 368999999999865 34456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++++|+||+|++.+|++|++||+.++. .. . ++.+.++++..++.+ ++.........+||||||||+
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD------EVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc------chHHHHhcCcccCCHHHHHHH
Confidence 788999999999999999999997531 11 1 122333333333321 112345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877789999999999876 599999999999987
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=351.11 Aligned_cols=200 Identities=25% Similarity=0.317 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|++ |++|+|.++|.++... ...++++++||
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 578999999964 56999999999999999999999999999999999987 5789999999998753 35678899999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|.+ |++||+.+.. ..+ ++++.++++..++.++ .......||||||||++||||++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA----------ADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH----------hhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999874 9999997521 122 2234445555544433 233346899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999988754 6899999999999875 99999999999987
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=349.47 Aligned_cols=201 Identities=21% Similarity=0.362 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++++|+.+||+||||||||||+++|+|++ |++|+|.+||.++.. .++++++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 478999999964 56999999999999999999999999999999999997 578999999998753 567899999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+|.+ |++||+.+.. ..+..+.. ..+.++++. .|++........+||||||||++||||++.+|++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLER-LELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHH-cCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999975 9999997531 12211111 112233333 2555556667789999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|+++. +++|+|++||++..+.. ||++++|++|++++
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999999999998875 36899999999999865 99999999999975
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=356.00 Aligned_cols=206 Identities=22% Similarity=0.381 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCC-CCChHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTE-DVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~-~~~~~~l 412 (597)
.++++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4889999999964 579999999999999999999999999999999999875 3799999999986 4566778
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|+.++||||++.+|..|++||+.++. ... + +++.++++.+++.+. +.+........||||||||++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE------VKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh------hhHHhhcCcccCCHHHHHHHH
Confidence 89999999999999999999997631 111 1 223344444444332 224456667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+.. ||++++|++|+|++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998778999999999999876 99999999999987
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=361.09 Aligned_cols=202 Identities=23% Similarity=0.330 Sum_probs=174.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++..++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++...+...+++.++||
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 789999999965556999999999999999999999999999999999987 5789999999999887777889999999
Q ss_pred eCCC--CCCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 420 PQDP--VLFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 420 ~Q~~--~LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+|++ .+|+.|++||+.++. ..+.+ .+.++++..++.+ ........||||||||++|||||+
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE----------LRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh----------HhcCCcccCCHHHHHHHHHHHHHH
Confidence 9997 478899999997532 23333 2344444444433 334445799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999999999999999988764 689999999999985 699999999999987
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=357.44 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+++|+|+.+ ++|+|.+||.++... +...
T Consensus 6 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECC-eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 3899999999964 569999999999999999999999999999999999852 279999999999876 4566
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---C-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---Y-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
.++.|+|++|++.+|++|++||+.++.. . + ++++.++++.+++.+ ++.+..+..+..||||||||+
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD------EVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch------hhHHHhhcChhhCCHHHHHHH
Confidence 7889999999999999999999986421 1 1 112333444333322 334456777889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++.+|+++||||||++||+++...+.+.|.++.+++|+|++||++..+. .||++++|++|++++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877799999999999996 599999999999987
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=373.01 Aligned_cols=204 Identities=22% Similarity=0.325 Sum_probs=173.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. |++|+|.+||.++.+.++. ++.|+|
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 3899999999964 56999999999999999999999999999999999997 5789999999999877654 688999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+|++.+|. .|++||+.++. ..+..+..+ .+.+.++. -|++.........||||||||+||||||+++|+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~-l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDL-VGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999996 79999998742 223222211 11222222 245555566778999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|++++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~ 215 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ 215 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988755 689999999999875 599999999999997
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=374.36 Aligned_cols=190 Identities=28% Similarity=0.352 Sum_probs=165.6
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----hcCcEEEeCCCCCCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL----RSNISIIPQDPVLFS 427 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l----r~~I~~V~Q~~~LF~ 427 (597)
++.+|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.|+...+...+ |++|+||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 456999999999999999999999999999999999998 578999999999999998887 789999999999997
Q ss_pred -ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 428 -GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 428 -gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
.|++|||.++. ..+. +++.++++.+ |++........+||||||||++|||||+++|+|||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 59999998642 2232 2334444444 4444566677799999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
||||+||+.+...+++.+.++.+ ++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999988743 79999999999986 5599999999999997
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=357.34 Aligned_cols=201 Identities=23% Similarity=0.361 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++++|+.++|+|+||||||||+++|+|++ |++|+|.++|.++...+...+++.++||
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999964 57999999999999999999999999999999999997 5789999999999888888888899999
Q ss_pred eCCCCCCCc-cHHhhcccCC-C-------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE-K-------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~-~-------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||++.+|.+ |++||+.++. . .. ++++.++++..+ ++.........||||||||++|||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR----------INHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcC----------CHHHHcCCcccCCHHHHHHHHHHH
Confidence 999999876 9999997641 1 01 122334444333 433445567799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999988753 789999999999986 599999999999987
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=359.49 Aligned_cols=206 Identities=25% Similarity=0.375 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCC--------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLS--------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
|+++||+|+|+. ++++|+|+||+|++||.+||+||||||||||+++|+|++ |.+|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 789999999953 357999999999999999999999999999999999998 57899999999998876543
Q ss_pred ---HhcCcEEEeCCCC--CC-CccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHH
Q psy1502 412 ---LRSNISIIPQDPV--LF-SGTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 ---lr~~I~~V~Q~~~--LF-~gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQr 480 (597)
+|+.|+||||++. ++ ..|++||+.+. .....++. ...+.+.++. .|++ .........||||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~-~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDM-VGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHH-cCCChhhhhCChhhCCHHHH
Confidence 6788999999983 44 47999998532 11121111 1111223322 2454 345667789999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||++..+. .||++++|++|++++
T Consensus 157 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999998764 789999999999997 499999999999988
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=356.97 Aligned_cols=205 Identities=24% Similarity=0.373 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-----------
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----------- 408 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----------- 408 (597)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 579999999964 57999999999999999999999999999999999987 57899999999997653
Q ss_pred --hHHHhcCcEEEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 409 --LSKLRSNISIIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 409 --~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
...+|+.++||+|++.+|. .|++||+.++. ....++..+ .+.+.++. -|++.........|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDM-VGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCChhHhhcChhhcCHHHHH
Confidence 2467889999999999985 79999997631 122222111 12233333 25555566677899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||++++|++|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998754 789999999999985 599999999999987
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=350.81 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++..++...+++.++|
T Consensus 7 ~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 4899999999964 56999999999999999999999999999999999997 578999999999998888888999999
Q ss_pred EeCCCCCCCccHHhhcccCC---CC--ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFSGTLRKNLDPFE---KY--PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~---~~--~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+|++.+|+.|++||+.+.. .. .++++. +.++. -|+. +........||||||||++|||||+++
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLER-FALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHH-cCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999997531 11 111222 23322 2453 456677889999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEe--CCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMD--SGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~--~G~Ive 552 (597)
|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||++++|+ +|+|.|
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQE 219 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhh
Confidence 999999999999999999999999998753 789999999999999999999996 566543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=359.28 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++ ++|+|.+||.++.+.+...+++.++|
T Consensus 11 ~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 4899999999964 579999999999999999999999999999999999985 78999999999988888888999999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC-----------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK-----------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~-----------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++.+|. .|++||+.+... ..++++.++++.+++.++ .......||||||||++||
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL----------AHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH----------hcCCcccCCHHHHHHHHHH
Confidence 999987765 499999975310 112335555555555433 2333458999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999998753 789999999999986 599999999999987
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=362.39 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=171.1
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC---------
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED--------- 406 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~--------- 406 (597)
|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 8899999999643 25999999999999999999999999999999999987 578999999987632
Q ss_pred ---------------CChHHHhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-
Q psy1502 407 ---------------VPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN- 465 (597)
Q Consensus 407 ---------------~~~~~lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld- 465 (597)
.+...+|+.||||||+| .+|..|++|||.++. ..+.+++.+.+ .+.++. -|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~-~gL~~ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRA-----AKYIEL-VGLDE 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHH-cCCCh
Confidence 13456889999999986 688999999998752 23443332211 122221 2443
Q ss_pred hhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH-hhcCEEE
Q psy1502 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI-MDSDKVL 543 (597)
Q Consensus 466 T~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti-~~~D~Ii 543 (597)
.........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+ ..||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 345667789999999999999999999999999999999999999999999988753 78999999999987 4699999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+|++
T Consensus 237 vl~~G~i~~ 245 (305)
T PRK13651 237 FFKDGKIIK 245 (305)
T ss_pred EEECCEEEE
Confidence 999999987
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=359.78 Aligned_cols=203 Identities=26% Similarity=0.384 Sum_probs=173.7
Q ss_pred cEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++|++++|++. +++|+|+||+|++||.+||+||||||||||+++|+|++ |.+|+|.+||.++.+.+...++++|+
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999643 46999999999999999999999999999999999998 47899999999998888888999999
Q ss_pred EEeCCCC--CCCccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDPV--LFSGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~~--LF~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+|++. ++..|+++|+.++. ..+.+ ++.++++..+ +..........||||||||++||||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrl~lara 156 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD----------MLERADYEPNALSGGQKQRVAIAGV 156 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcC----------CchhhhCCcccCCHHHHHHHHHHHH
Confidence 9999984 45678999997642 12222 2333333333 3333445567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~ 222 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYK 222 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 689999999999998899999999999987
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=362.03 Aligned_cols=200 Identities=26% Similarity=0.299 Sum_probs=168.1
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----hcCc
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL----RSNI 416 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l----r~~I 416 (597)
.++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4678888885 356999999999999999999999999999999999998 478999999999988775543 4689
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+||||++.+|. .|++||+.+.. ..+ ++++.++++..++.+ .+......||||||||++||||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~Gq~qrv~lAra 174 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG----------WEHKYPDELSGGMQQRVGLARA 174 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------HhhCCcccCCHHHHHHHHHHHH
Confidence 99999999995 69999997531 122 223444444444433 3344456899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|+++|+||||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 175 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999988753 689999999999875 599999999999987
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=352.77 Aligned_cols=210 Identities=20% Similarity=0.319 Sum_probs=174.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++|++++|++ +++|+|+||+|++|+.++|+|+||||||||+++|+|++ |++|+|.+||.++...+... .++.++|
T Consensus 3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 789999999964 56999999999999999999999999999999999987 57899999999998877654 3567999
Q ss_pred EeCCCCCCCc-cHHhhcccCCCCChH---HH---HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEKYPDY---VL---WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~~~~e---~i---~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||++.+|.+ |++||+.++...... .+ ........+.++++. -|++.........||||||||++||||+++
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLET-IGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHH-cCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 999999763211000 00 000011112233333 356666677778999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+++...+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|++++
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 99999999999999999999999999998778999999999999975 99999999999987
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=356.20 Aligned_cols=206 Identities=25% Similarity=0.422 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
-|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.+||.++... +...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGE-KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCC-ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 3899999999964 579999999999999999999999999999999999874 589999999998753 3456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.++|+||++.+|+.|++||+.++. .. . ++++.++++..++++.+ +.........||||||||+
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV------KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh------HHHHhCChhhcCHHHHHHH
Confidence 788999999999999999999997531 11 1 12234444444443222 2345667789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|+||||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999877899999999999875 599999999999987
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=351.11 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=172.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC--ChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV--PLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~--~~~~lr~~I~ 417 (597)
|+++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|++ |++|+|.+||.++... +...++++++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 689999999964 56999999999999999999999999999999999998 4789999999999864 3456788999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+||++.+|. .|++||+.++. ..+..+..+ .+.+.++. .|++.........||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAK-VGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHH-cCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 69999997632 122222111 11233332 3566666667789999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999988753 7899999999999965 99999999999987
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=353.63 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC------CCChHHHh
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE------DVPLSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~------~~~~~~lr 413 (597)
|+++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|++ |++|+|.+||.++. ..+...+|
T Consensus 3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 789999999964 57999999999999999999999999999999999998 47899999999873 22345678
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
++|+|+||++.+|.+ |++||+... ...+.++..+ .+.++++. -|++..+......||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLER-LRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 899999999999974 999999642 1122222111 12233333 356666666778999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++++|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||++++|++|++++
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 7999999999999965 99999999999987
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=356.36 Aligned_cols=206 Identities=25% Similarity=0.394 Sum_probs=176.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 10 ~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 4899999999964 469999999999999999999999999999999999863 57999999999853 45567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---C---ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---Y---PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~---~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++++|+||+|++.+|+.|++||+.++.. . .++++.++++.+++.+++. ......+.+||||||||++|
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK------DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH------HHhcCCcccCCHHHHHHHHH
Confidence 7889999999999999999999976421 1 1234555566666654443 23456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe---------CCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD---------SGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~---------~G~Ive 552 (597)
||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999877889999999999886 589999999 799988
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=359.44 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=173.1
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~ 411 (597)
|+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999642 46999999999999999999999999999999999997 5789999999998764 3467
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||||++ .+|+.|++||+.+.. ..+.++..+.+ .++++. .|++ .........||||||||++|
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLAL-VGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCCChhhhhCCcccCCHHHHHHHHH
Confidence 888999999998 688999999997632 23333332211 122222 3554 24466678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988754 789999999999886 499999999999987
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=352.85 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC--------hHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP--------LSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~--------~~~ 411 (597)
++++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ ...
T Consensus 4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 899999999964 46999999999999999999999999999999999998 47899999999987542 346
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+|++++||||++.+|. .|++||+.++ .....++..+. +.+.++. .|++.........||||||||++||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAK-VGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-cCCcchhhCChhhCChHHHHHHHHH
Confidence 7889999999999986 6999999753 12222222111 1233333 2555555667889999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999988754 7899999999999965 99999999999987
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=352.32 Aligned_cols=205 Identities=25% Similarity=0.383 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+... +|+.++|
T Consensus 4 l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 789999999964 57999999999999999999999999999999999987 57899999999998877644 5788999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|||++.+|. .|++||+.+... .+.++. ...+.++++.+ |++.........||||||||++||||++++|
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF-HIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc-CCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998 599999976421 222211 11223444433 6666667778899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++.+ ++|+|++||++..+. .||++++|++|++++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 99999999999999999999999987653 789999999998775 599999999999987
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=369.77 Aligned_cols=199 Identities=24% Similarity=0.329 Sum_probs=170.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+. .++.|+||
T Consensus 3 L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEE
Confidence 789999999964 56999999999999999999999999999999999998 578999999999987654 46789999
Q ss_pred eCCCCCCC-ccHHhhcccCCC-------CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK-------YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~-------~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+|++.+|. .|++||+.++.. .+. +++.++++..++ +.........||||||||++|||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L----------~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL----------AHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCC----------chhhhCChhhCCHHHHHHHHHHH
Confidence 99999997 599999986421 222 233344444433 33344556799999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998765 6899999999998765 99999999999998
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=351.38 Aligned_cols=207 Identities=21% Similarity=0.324 Sum_probs=171.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~ 417 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++...+... +++.++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 3899999999964 57999999999999999999999999999999999998 47899999999998887654 678899
Q ss_pred EEeCCCCCCCc-cHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||+|++.+|.+ |++||+.+... .+.++..+.+ .+.+..+.+++.........||||||||++||||++++|+|
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i 158 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999985 99999976421 2222222211 12222222222223445678999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (237)
T PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL 217 (237)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe
Confidence 99999999999999999999998875 4799999999999764 599999999999987
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=373.98 Aligned_cols=202 Identities=22% Similarity=0.348 Sum_probs=177.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|++ |.+|+|.++|.++.+++...++++|+|
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3899999999964 67999999999999999999999999999999999987 578999999999999998899999999
Q ss_pred EeCCCCC-CCccHHhhcccCCC-----------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVL-FSGTLRKNLDPFEK-----------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~~~-----------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|+|++.+ |+.|++||+.++.. .+++.+.++++..++.++. ......||||||||++||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~----------~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA----------DRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh----------cCChhhCCHHHHHHHHHH
Confidence 9999987 67899999976421 1233466666666665443 234568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|+||||||||++||+.+...+++.|+++. .++|+|+++|+++.+. .|||+++|++|++++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999886 4789999999999995 599999999999987
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=357.64 Aligned_cols=203 Identities=29% Similarity=0.367 Sum_probs=175.4
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
-|+++||+++|++ .+++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++...+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 3899999999964 2469999999999999999999999999999999999984 789999999999887777889999
Q ss_pred EEEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||+|++ .+++.|+.|||.++. ..+.++ +.++++.+++.+ ........||||||||++|||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~qrv~lAr 153 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD----------FKTREPARLSGGQKQRVAVAG 153 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh----------HhhCCcccCCHHHHHHHHHHH
Confidence 9999998 477899999998631 233333 334444444433 334456789999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+++|+||||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++
T Consensus 154 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998864 789999999999998999999999999988
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=356.07 Aligned_cols=206 Identities=25% Similarity=0.407 Sum_probs=174.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.++++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 24 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 4999999999964 469999999999999999999999999999999999863 68999999999854 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCChHH-----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDYV-----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e~-----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
++++++|+||++.+|..|++||+.++. ..++++ +.++++..++. +++.......+..||||||||+
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW------DELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc------chHHHHHhcCcccCCHHHHHHH
Confidence 788999999999999999999997531 222221 22222222221 2344556677889999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998778999999999999865 99999999999987
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=359.77 Aligned_cols=203 Identities=24% Similarity=0.363 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCC---ceEEEcceeCCCCChHHHhc
Q psy1502 340 KIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVE---GVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~---G~I~idg~di~~~~~~~lr~ 414 (597)
.|+++|++|+|++ ..++|+|+||+|++||.+||+||||||||||+++|+|++ |++ |+|.+||.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4899999999964 346999999999999999999999999999999999998 455 99999999998877778889
Q ss_pred CcEEEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 415 NISIIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 415 ~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+|+||||++ .+++.|++|||.++. ..+.++ +.++++..++ +........+||||||||++|
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L----------~~~~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGM----------LDYIDSEPANLSGGQKQRVAI 154 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC----------hhHhcCCcccCCHHHHHHHHH
Confidence 999999998 467899999998641 233333 3444444444 334455567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988754 689999999999999999999999999998
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=356.02 Aligned_cols=206 Identities=21% Similarity=0.347 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 3899999999974 579999999999999999999999999999999999853 38999999999864 34456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccC---CCCC-----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPF---EKYP-----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~---~~~~-----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.++||||++.+|+.|+++|+.+. .... ++++.++++.+++.+ ++..........||||||||+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD------EVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc------chhhHHhcCcccCCHHHHHHH
Confidence 78899999999999999999999753 1111 122333344443322 223445666789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|++|||||||++||+.+...+.+.|.++.++.|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877789999999999986 499999999999987
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=354.25 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++|++++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 3899999999964 569999999999999999999999999999999999863 579999999999653 3456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CC-Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KY-PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.++||||++.+|+.|++||+.++. .. +. +++.++++.+++.+. +..........||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE------VKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh------hhhHhhCCcccCCHHHHHHH
Confidence 788999999999999999999998642 11 11 233445555444322 22335566789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||++++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999988778999999999999865 99999999999987
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=356.91 Aligned_cols=207 Identities=22% Similarity=0.335 Sum_probs=175.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCC-hHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVP-LSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~-~~~l 412 (597)
.++++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||.++.+.+ ...+
T Consensus 21 ~l~i~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 21 AMAAVNLTLGFAG-KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEEeeEEEEECC-EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 4899999999964 579999999999999999999999999999999999974 4899999999998763 4567
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhc---CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEG---AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++|+||||++.+|+.|++||+.++. ..++++..+.+ .+.++.+ ..+++.+......||||||||++|
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 89999999999999999999997631 13444433221 1122221 122345667788999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||++++|++|+|++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988777899999999999865 99999999999987
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=372.40 Aligned_cols=200 Identities=23% Similarity=0.325 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++|+|
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 3899999999964 56999999999999999999999999999999999997 578999999999987665 3578999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++||+.++. ..+.+ ++.++++.. |++.........||||||||++|||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~l----------gL~~~~~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL----------QLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc----------CChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998642 22322 233444433 3443444556789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 789999999999876 599999999999987
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=356.09 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=176.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||+++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 5899999999964 569999999999999999999999999999999999874 37999999999864 44567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC----CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE----KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~----~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+++.|+||||++.+|+.|++||+.++. ..+ ++.+.++++.+++.+++. ......+..||||||||+
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LS~G~~qrv 159 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK------DKLNKSALGLSGGQQQRL 159 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh------hHhcCCcccCCHHHHHHH
Confidence 888999999999999999999997531 112 223455566666544432 234456779999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe-----CCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD-----SGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~-----~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 9999999999999999999999999999999999998778999999999999865 89999998 599988
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=361.10 Aligned_cols=209 Identities=22% Similarity=0.332 Sum_probs=172.7
Q ss_pred cccEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----C-
Q psy1502 338 LGKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----V- 407 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----~- 407 (597)
.+.|+++|++++|++. .++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 3569999999999653 25999999999999999999999999999999999998 578999999999853 2
Q ss_pred ChHHHhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHH
Q psy1502 408 PLSKLRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQ 481 (597)
+...+|++|+||+|++ .+|+.|++||+.++. ..+.++..+.+ .+.++. .|+. .........|||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~-~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKL-VQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCCChhHhcCChhhCCHHHHH
Confidence 3567888999999998 578889999997632 22333322211 122222 2442 3455667899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988753 789999999999875 599999999999987
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=355.46 Aligned_cols=207 Identities=22% Similarity=0.318 Sum_probs=172.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCC----------
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV---------- 407 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~---------- 407 (597)
+.|+++||++.|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++ ++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 35999999999964 569999999999999999999999999999999999984 789999999998642
Q ss_pred ---ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCCCChh
Q psy1502 408 ---PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTNFSVG 478 (597)
Q Consensus 408 ---~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~LSGG 478 (597)
....+++.++||||++.+|. .|++||+.++. ....++..+ .+.++++. .|+.... ......||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAK-VGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHH-cCCChhhhhCCcccCCHH
Confidence 13467889999999999997 59999997521 122221111 11222222 2444433 5567899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988754 7999999999999986 99999999999997
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=359.46 Aligned_cols=206 Identities=26% Similarity=0.414 Sum_probs=174.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.+ .+...
T Consensus 39 ~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 39 VIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred eEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence 4899999999964 569999999999999999999999999999999999873 58999999999865 34567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+++.++||||++.+|..|++||+.+.. ... ++++.++++..++.+.+ ...+......||||||||++|
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i------~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV------KDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh------HHHHhCCcccCCHHHHHHHHH
Confidence 889999999999999999999997531 111 23445555555443222 123456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE-EEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL-VMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii-vl~~G~Ive 552 (597)
||||+++|+||||||||++||+++...+.+.|+++.+++|+|++||++..+.. ||+++ +|++|+|++
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999998777899999999999875 99975 579999987
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=352.78 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=176.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---c---CCceEEEcceeCCCC--ChHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---E---VEGVIKIDDIDTEDV--PLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~---~~G~I~idg~di~~~--~~~~l 412 (597)
++++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+. | ++|+|.+||.++... +...+
T Consensus 4 l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 4 IEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 789999999964 56999999999999999999999999999999999974 3 689999999998753 45678
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCC---CC-Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFE---KY-PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
++.++||||++.+|+.|++||+.++. .. +. +++.++++.+++.+++.. .+...+..||||||||++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~------~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD------KLDKSALGLSGGQQQRLC 156 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH------HHhCCcccCCHHHHHHHH
Confidence 89999999999999999999997531 11 22 235556666666555432 245567899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++++|++|||||||++||+.+...+.+.|.++.+++|+|++||++..+.. ||++++|++|++++
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999998778999999999998876 89999999999987
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=362.35 Aligned_cols=207 Identities=26% Similarity=0.352 Sum_probs=172.3
Q ss_pred cEEEEeeEEEeCC------------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC
Q psy1502 340 KIEFQNTNVRYLS------------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED 406 (597)
Q Consensus 340 ~I~f~nVsf~Y~~------------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~ 406 (597)
-|+++|++++|+. ..++++|+||+|++||++||||+||||||||+++|+|++ |++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 3899999999952 246999999999999999999999999999999999998 478999999999998
Q ss_pred CChHH---HhcCcEEEeCCC--CCC-CccHHhhcccC-----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCC
Q psy1502 407 VPLSK---LRSNISIIPQDP--VLF-SGTLRKNLDPF-----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTN 474 (597)
Q Consensus 407 ~~~~~---lr~~I~~V~Q~~--~LF-~gTI~eNI~~~-----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~ 474 (597)
.+... +|++|+||+|+| .|| ..||.|||.+. ...+.++..+.++ +.++. -|++ .........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~-----~~l~~-vgl~~~~~~~~p~~ 161 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK-----AMMLK-VGLLPNLINRYPHE 161 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHH-cCCChHHhcCCccc
Confidence 87544 678999999998 477 47999998631 1234444332221 22222 2332 234556779
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
||||||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 7899999999999975 9999999999999
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
|
T Consensus 242 e 242 (331)
T PRK15079 242 E 242 (331)
T ss_pred E
Confidence 8
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=354.61 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=178.1
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC----C
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED----V 407 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~----~ 407 (597)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ ++|+|.+||.++.. .
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 456999999999964 479999999999999999999999999999999999863 58999999988752 3
Q ss_pred ChHHHhcCcEEEeCCCCCCCccHHhhcccCC---CC-----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 408 PLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
+...+++.|+|+||++.+|.+|++||+.++. .. .++++.++++.+++.+ ++.+..+.....|||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD------EVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch------hhhHHHhCCcccCCHHH
Confidence 4457788999999999999999999997531 11 1244555555554432 33345667788999999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||++||||++++|++|||||||++||+++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999877889999999999996 599999999999987
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=351.54 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|++ |.+|+|.+||.++...+...++++++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 789999999964 56999999999999999999999999999999999987 5789999999999888888888899999
Q ss_pred eCCCCC-CCccHHhhcccCCC---CC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc-
Q psy1502 420 PQDPVL-FSGTLRKNLDPFEK---YP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~~---~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll- 490 (597)
||++.+ ++.|++||+.++.. .+ ++++.++++.. |++.........||||||||++|||||+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV----------DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc----------CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999987 67899999976421 11 12233334333 3443445566799999999999999999
Q ss_pred -----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 -----RNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 -----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 5999999999999999999999999999875 4789999999999986 599999999999987
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=352.47 Aligned_cols=209 Identities=23% Similarity=0.336 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~ 417 (597)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...+ +..++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 3899999999964 57999999999999999999999999999999999997 578999999999988876555 45699
Q ss_pred EEeCCCCCCCc-cHHhhcccCCC-CCh--------------HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEK-YPD--------------YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~-~~~--------------e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
||||++.+|.+ |++||+.++.. ..+ .+-.++ ...+.++++. -|++........+|||||||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLER-VGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHh-CChhhhhhCChhhCCHHHHH
Confidence 99999999985 99999986421 000 000011 1112233333 36666777888899999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 99999999999999999999999999999999999988754 6899999999999865 99999999999987
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=356.50 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I~ 417 (597)
|+++||+++|++ +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||.++. +.+...+|++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999964 56999999999999999999999999999999999987 57899999999985 334567788999
Q ss_pred EEeCCCC--CCCccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDPV--LFSGTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~~--LF~gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||||++. +|..|+.+|+.++ ...+.++ +.++++..++.+ ........||||||||++||||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH----------FRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh----------HhcCCchhCCHHHHHHHHHHHH
Confidence 9999985 6778999999753 1223322 233333333332 2334567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||++..+. .||++++|++|++++
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~ 216 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998875 4789999999999985 499999999999987
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=343.38 Aligned_cols=197 Identities=26% Similarity=0.378 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|+. +++|+||++++|+.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+ .+++.++||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 368999999962 578999999999999999999999999999999987 57899999999987644 467889999
Q ss_pred eCCCCCCC-ccHHhhcccC-C-C-----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPF-E-K-----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~-~-~-----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|. .|++||+.+. . . .+++++.++++..++.+. .......||||||||++||||+++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY----------LDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHH----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999997 4999999752 1 1 122345555665555443 333345899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++||||||++||+++...+.+.|.++.+ ++|+|+|||++..+.. ||++++|++|++++
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999998753 6899999999999865 99999999999987
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=358.33 Aligned_cols=203 Identities=25% Similarity=0.385 Sum_probs=173.6
Q ss_pred cEEEEeeEEEeCC-----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC-hHHH
Q psy1502 340 KIEFQNTNVRYLS-----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP-LSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~-~~~l 412 (597)
-|+++|++++|++ .+++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 3899999999963 2469999999999999999999999999999999999985 7899999999997654 3567
Q ss_pred hcCcEEEeCCC--CCCCccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDP--VLFSGTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|++++||||+| .+|..|+.+|+.++. ..+. +++.++++.+++.+ ........||||||||+
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~LS~G~~qrv 153 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE----------YRRHAPHLLSGGQKQRV 153 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh----------HhhCCcccCCHHHHHHH
Confidence 89999999998 477789999998642 1222 23444444444443 34445579999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+..||++++|++|+|++
T Consensus 154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~ 224 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVM 224 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998753 789999999999998899999999999987
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=366.57 Aligned_cols=202 Identities=26% Similarity=0.372 Sum_probs=173.2
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCC--ceEEEcceeCCCCChHHHhc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVE--GVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~--G~I~idg~di~~~~~~~lr~ 414 (597)
.++|+++||+++|++ .++|+|+||+|++|+.++|+||||||||||+++|+|++ |++ |+|.+||.++.+.+. .++
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred ceEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 357999999999964 56999999999999999999999999999999999997 578 999999999987665 367
Q ss_pred CcEEEeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
.|+||+|++.+|. .|++|||.++- ..+.++ +.++++.. |++.........||||||||+|||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~----------gL~~~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV----------GLGDAAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------CCCchhhCChhhCCHHHHHHHHHH
Confidence 8999999999996 49999998641 233333 33333333 444445566679999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~ 219 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988765 689999999999875 599999999999998
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=354.79 Aligned_cols=202 Identities=19% Similarity=0.273 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+...+++.|+|
T Consensus 7 ~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 7 RLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 5999999999974 56999999999999999999999999999999999987 478999999999998888888889999
Q ss_pred EeCCCCCCC-ccHHhhcccCC-C-------CC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE-K-------YP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~-~-------~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++.+|. .|++||+.++. . .. ++++.++++..++ +.........||||||||++||
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI----------THLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC----------HHHhcCCcccCChHHHHHHHHH
Confidence 999999885 69999997531 1 01 1234444444444 3334456789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++++|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998754 6899999999998755 99999999999987
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=369.38 Aligned_cols=200 Identities=26% Similarity=0.355 Sum_probs=172.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++|++++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++ ++|+|.+||.++.+.+++ ++.|+|
T Consensus 14 ~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred eEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 4899999999964 569999999999999999999999999999999999985 689999999999877654 578999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. .|++|||.++- ..+.. ++.++++..++. .........||||||||+||||||+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE----------EFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc----------hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998742 22322 334444444443 3344455799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998764 689999999999875 599999999999998
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=357.38 Aligned_cols=202 Identities=23% Similarity=0.336 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC--CChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED--VPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~--~~~~~lr~~I~ 417 (597)
|+++||+++|+..+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||.++.. .+...++++|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 6899999999754579999999999999999999999999999999999985 68999999999852 23456789999
Q ss_pred EEeCCC--CCCCccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 418 IIPQDP--VLFSGTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 418 ~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
|+||++ .+|+.|++||+.++. ..+.++ +.++++..++ +.........|||||+||++||||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L----------~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM----------EGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC----------chhhcCChhhCCHHHHHHHHHHHH
Confidence 999997 578899999997532 222222 3333333333 222334456899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||++..+. .||+|++|++|++++
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998754 789999999999987 599999999999998
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=353.47 Aligned_cols=206 Identities=26% Similarity=0.423 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.++++||+++|++ .++|+|+||+|++|+.+||+||||||||||+++|+|+++ ++|+|.+||.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4899999999964 469999999999999999999999999999999999873 48999999999853 44567
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccCC---C-CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPFE---K-YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~-~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
+|+.|+||+|++.+|. .|++||+.++. . .+. +.+.++++..++.+++ .........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------hhHhhCCcccCCHHHHHH
Confidence 8899999999999997 59999997521 1 111 2234444444443222 234556678999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe------CCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD------SGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~------~G~Ive 552 (597)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999998877799999999999986 599999997 799987
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=352.56 Aligned_cols=201 Identities=23% Similarity=0.316 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++...+...+++.++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 689999999964 579999999999999999999999999999999999984 789999999999998888888899999
Q ss_pred eCCCC-CCCccHHhhcccCCC-C----------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 420 PQDPV-LFSGTLRKNLDPFEK-Y----------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 420 ~Q~~~-LF~gTI~eNI~~~~~-~----------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||++. .+..|++||+.++.. . .++++.++++..++ ..........||||||||++|||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL----------SHLADRDMSTLSGGERQRVHVAR 150 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc----------HhhhcCCcccCCHHHHHHHHHHH
Confidence 99985 456899999976421 0 11233444444443 33344556789999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++.+|+++||||||++||+++...+.+.|.++.+ +.|+|++||+++.+. .||+|++|++|++++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 99999999999999999999999999999998754 689999999999995 599999999999987
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=346.09 Aligned_cols=204 Identities=27% Similarity=0.367 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH---HHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS---KLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~---~lr 413 (597)
++++||++.|++. +++|+|+||++++|+.+||+|+||||||||+++|+|+++ ++|+|.+||.++.+.+.. .++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 569999999999999999999999999999999999985 789999999999877643 467
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+.|+|+||++.+|. .|+.||+.+.. ..+.++..+. +.+.++. -|++.........||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER-----ARAMLEA-VGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHH-cCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 89999999999998 69999997532 2233322211 1222222 245555556667999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
++++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999988764 7999999999998888999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=332.96 Aligned_cols=171 Identities=33% Similarity=0.491 Sum_probs=158.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC--hHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP--LSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~--~~~lr~~I~ 417 (597)
|+++|++++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++ ++|+|.+||.++.+++ ...++++++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 478999999964 569999999999999999999999999999999999985 6899999999998876 567889999
Q ss_pred EEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|++|++.+|. .|++||+.+. ||||||||++||||++++|+++
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG-------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEecCCccCCCCCHHHheeec-------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 9999999986 5999999763 9999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCe
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGV 549 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~ 549 (597)
||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999998765 589999999999998 599999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=331.36 Aligned_cols=169 Identities=30% Similarity=0.515 Sum_probs=156.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++ .++|+|+||++++||.++|+||||||||||+++|+|++ |.+|+|.+||.++...+ ..+|+.++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 478999999964 46999999999999999999999999999999999998 47899999999998765 5678899999
Q ss_pred eCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 420 PQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
||++.+|.+ |++||+. ||||||||++|||||+++|++|||
T Consensus 79 ~q~~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 79 PEEPSLYENLTVRENLK---------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred ecCCccccCCcHHHHhh---------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999986 9999984 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~I 550 (597)
||||++||+.+...+.+.|+++.+ +.|+|++||+.+.+. .||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999998754 589999999999887 5899999999975
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=346.46 Aligned_cols=208 Identities=20% Similarity=0.321 Sum_probs=167.4
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHh
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr 413 (597)
++|+||+|.|++. +++|+|+||+|++||.+||+||||||||||+++|+|+++ ++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999754 689999999999999999999999999999999999864 6899999999875 34678
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccCCC-CChHHHHHHHHHhcHHH-HHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPFEK-YPDYVLWTALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~~~-~~~e~i~~a~~~a~l~~-fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+.|+|+||++.+|++ |++||+.+... .......++.......+ .++. -|++.........|||||+||++||||++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD-LALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh-hcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 899999999999987 99999975311 00000011111111112 1221 24444445566899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCc-hh-HhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRL-HT-IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl-st-i~~~D~Iivl~~G~Ive 552 (597)
++|++|||||||++||+.+...+.+.|.++. .++|+|++||++ .. ...||+|++|++|++++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999998875 368999999998 34 46799999999999975
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=353.47 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=176.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~--~~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++.. .+...
T Consensus 20 ~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 20 VFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred eEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 5999999999964 469999999999999999999999999999999999863 38999999999864 34456
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---C---ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---Y---PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~---~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+|+.|+||||++.+|+.|+.||+.++.. . .++++.++++.+++.+++. .........||||||||++|
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK------DKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH------HHhcCCcccCCHHHHHHHHH
Confidence 7899999999999999999999976421 1 1334555666666544432 23445677999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe---------CCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD---------SGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~---------~G~Ive 552 (597)
||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||++++|+ +|++++
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999877899999999999986 599999998 899988
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=352.88 Aligned_cols=202 Identities=20% Similarity=0.288 Sum_probs=170.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH---HHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS---KLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~---~lr~~ 415 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+.. .++++
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 4899999999964 56999999999999999999999999999999999998 5789999999999876643 35788
Q ss_pred cEEEeCCCCCCCc-cHHhhcccC-C---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPF-E---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~-~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|+||||++.+|.+ |++||+.+. . ..+.+ ++.++++.. |++.........||||||||++||
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV----------GLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc----------CChhhhhCChhhCCHHHHHHHHHH
Confidence 9999999999986 999999752 1 12222 122222222 444334445678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||++..+.. ||+|++|++|++++
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999998753 6899999999998865 99999999999987
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=357.93 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=173.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---c---CCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---E---VEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~---~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. | ++|+|.+||.++... +...
T Consensus 39 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 39 HVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred EEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 4899999999964 46999999999999999999999999999999999974 3 689999999998653 3345
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCC---CCC-h----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFE---KYP-D----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~-~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
+|+.|+||+|++.+|++|++||+.++. ... . +++.++++..++.+. +..........||||||||+
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE------VSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc------hhhHhhCChhhCCHHHHHHH
Confidence 788999999999999999999998632 121 1 223344444443221 12234556789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988777899999999999865 99999999999987
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=361.07 Aligned_cols=205 Identities=22% Similarity=0.291 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHH
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~l 412 (597)
|+++|++++|+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++ ++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7999999999643 369999999999999999999999999999999999874 57999999999999887665
Q ss_pred h----cCcEEEeCCCC--CCC-ccHHhhcc----cCCCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh
Q psy1502 413 R----SNISIIPQDPV--LFS-GTLRKNLD----PFEKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477 (597)
Q Consensus 413 r----~~I~~V~Q~~~--LF~-gTI~eNI~----~~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG 477 (597)
+ +.|+||||++. ++. -|+.+|+. .....+ .+++.++++..++.+. ...+......|||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~-------~~~l~~~p~~LSg 156 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP-------ASRLDVYPHQLSG 156 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------HHHHhCCchhCCH
Confidence 4 37999999995 443 46665553 221122 2334445554444321 2335567789999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||++|||||+.+|++||+|||||+||+.+...+.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998754 789999999999995 599999999999999
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=352.22 Aligned_cols=207 Identities=25% Similarity=0.445 Sum_probs=175.4
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC------CceEEEcceeCCC--CChH
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDIDTED--VPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~------~G~I~idg~di~~--~~~~ 410 (597)
+.|+++||+++|++ +++|+|+||++++|+.+||+|+||||||||+++|+|++++ +|+|.+||.++.. .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 35999999999964 4699999999999999999999999999999999999864 7999999999853 3456
Q ss_pred HHhcCcEEEeCCCCCCCccHHhhcccCC---CC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 411 KLRSNISIIPQDPVLFSGTLRKNLDPFE---KY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
.+|+.++|++|++.+|..|++||+.+.. .. + ++++.++++..++.+++. ...+.....||||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK------HKIHKSALDLSGGQQQR 158 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh------hHhcCCcccCCHHHHHH
Confidence 7789999999999999999999997531 11 2 223445555555544333 23456778999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeC-----CeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDS-----GVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~-----G~Ive 552 (597)
++||||++++|++|||||||++||+++...+.+.|.++. .++|+|+|||++..+. .||+|++|++ |++++
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999999998864 4799999999999986 4899999999 99987
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=358.62 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++... ...+|++|+|
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 3899999999964 56999999999999999999999999999999999987 5789999999998754 3567889999
Q ss_pred EeCCCCCCC-ccHHhhcccC-C--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF-E--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~-~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+|. .|++||+.+. . ..+..+..+.++ +.++. .|++.........||||||||++|||||+.+|+
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEF-ARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999985 6999999742 1 233333322211 12211 233333344456899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIA 215 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998874 47899999999999965 99999999999987
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=350.13 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-----CceEEEcceeCCC--CChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-----EGVIKIDDIDTED--VPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-----~G~I~idg~di~~--~~~~~ 411 (597)
-++++||+++|++ +++|+|+||+|++|+.+||+|+||||||||+++|+|+++ + +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGD-KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECC-EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 3789999999964 579999999999999999999999999999999999873 2 7999999999875 34557
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccCC---CC-ChHHHHHH----HHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPFE---KY-PDYVLWTA----LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~-~~e~i~~a----~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
+|+.|+|++|++.+|. .|++||+.++. .. .+++..+. ++..++.+. +.........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE------VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh------hhhhhcCCcccCCHHHHHH
Confidence 7889999999999998 59999997531 11 23333222 222222222 1122334467899999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998778999999999999985 89999999999987
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=359.44 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ ..+|+||||+|++||++||+||+|||||||+++|+|++ |++|+|.++|.|+...+ ...|++|||
T Consensus 7 ~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~ 84 (306)
T PRK13537 7 PIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGV 84 (306)
T ss_pred eEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEE
Confidence 5899999999964 56999999999999999999999999999999999987 57899999999997654 457899999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHH----HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLW----TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~----~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||++.+|. .|++||+.+.. ..+..+.. ++++..++. +..++.+ .+||||||||++|||||+
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE------NKADAKV----GELSGGMKRRLTLARALV 154 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc------hHhcCch----hhCCHHHHHHHHHHHHHh
Confidence 999999986 69999997521 23333222 222222221 2334444 589999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||.++.+.. ||+|++|++|++++
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998754 7899999999999965 99999999999998
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=358.42 Aligned_cols=206 Identities=23% Similarity=0.435 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEEcceeCCCC--ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKIDDIDTEDV--PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~idg~di~~~--~~~~ 411 (597)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|++ |.+|+|.+||.++... +...
T Consensus 45 ~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 45 KLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred eEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 5899999999964 56999999999999999999999999999999999986 3589999999998753 4567
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCC---------------C-----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCC
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEK---------------Y-----PDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---------------~-----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~ 471 (597)
+|+.|+||||++.+|++|++||+.++.. . .++++.++++.+++.+ ++++.+...
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~ 197 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD------EVNDRLDDN 197 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch------hhhHHhcCc
Confidence 7889999999999999999999975311 0 1122334444443322 344566777
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEE-EEEeCCe
Q psy1502 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKV-LVMDSGV 549 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~I-ivl~~G~ 549 (597)
..+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|++|+
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~ 277 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE 277 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence 8899999999999999999999999999999999999999999999998878999999999999865 9997 5689999
Q ss_pred EEE
Q psy1502 550 AVV 552 (597)
Q Consensus 550 Ive 552 (597)
+++
T Consensus 278 i~~ 280 (305)
T PRK14264 278 LVE 280 (305)
T ss_pred EEE
Confidence 987
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=353.59 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHH
Q psy1502 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~ 411 (597)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+. |++|+|.+||.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999632 46999999999999999999999999999999999987 5789999999998653 3456
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHH
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaI 485 (597)
.++.|+||||+| .+|+.|++|||.++. ..+.++..+. +.++++. -|+++ ........||||||||++|
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~-~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKK-VGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH-cCCChhHhhCCcccCCHHHHHHHHH
Confidence 778999999998 588899999997531 2333322211 1122222 35542 4456678999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||+.+|++|||||||++||+++...+.+.|+++. .+.|+|++||+++.+. .||++++|++|++++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999875 4789999999999985 599999999999987
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=329.09 Aligned_cols=169 Identities=48% Similarity=0.781 Sum_probs=159.8
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
|+++|++++|++. +++|+|+||+|++|+.++|+||+|||||||+++|+|++ |.+|+|.++|.++..++...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999653 36999999999999999999999999999999999997 478999999999988888888999999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
++|++.+|+.|+.||+ ||||||||++||||++.+|++|||
T Consensus 81 ~~~~~~~~~~t~~e~l----------------------------------------LS~G~~~rl~la~al~~~p~llll 120 (171)
T cd03228 81 VPQDPFLFSGTIRENI----------------------------------------LSGGQRQRIAIARALLRDPPILIL 120 (171)
T ss_pred EcCCchhccchHHHHh----------------------------------------hCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
||||++||+.+...+.+.|.++.+++|+|++||++..+..||++++|++|+
T Consensus 121 DEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred ECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=350.55 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=176.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCC--ChHHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDV--PLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~--~~~~l 412 (597)
+.++++++.|. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+||.++... ....+
T Consensus 9 ~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 9 MDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred EEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 78999999995 3579999999999999999999999999999999999984 489999999998653 44567
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
++.|+||||++.+|+.|++|||.++.. ...+++.++++.+++.+.+. ...++...+|||||+||++||
T Consensus 88 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~------~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK------DKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh------hhhhCCcccCCHHHHHHHHHH
Confidence 889999999999999999999986421 12245666777766644432 234567789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEe--------CCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMD--------SGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~--------~G~Ive 552 (597)
|||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|++++
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 999999999999999999999999999999999877889999999999886 599999996 899998
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=345.88 Aligned_cols=199 Identities=27% Similarity=0.363 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||++.+||.+||+||||||||||+++|+|+++ .+|+|.+||.++...+. .++.++||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 478999999974 569999999999999999999999999999999999975 68999999999986653 47889999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|++ |++||+.+.. ..+ ++++.++++..+ +.-.......+|||||+||++||||+++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~lS~G~~qrl~laral~~ 147 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQ----------LEGLGDRYPNQLSGGQRQRVALARALAV 147 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcC----------CHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999975 9999997632 122 122333333333 3333344557899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++||||||++||+++...+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 148 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 148 EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999998754 6899999999999765 99999999999988
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=348.27 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=166.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+ + |++|+|.+||.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 478999999964 5699999999999999999999999999999999998 3 578999999999988877665 4559
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----C------CChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCC-CCChhHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----K------YPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGT-NFSVGQRQLI 483 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~------~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~-~LSGGQrQRI 483 (597)
+||||++.+|.+ |++||+.+.. . .+.++..+ .+.+.++. -|++... ..... .||||||||+
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLAL-LGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHH-cCCchhhcccccccCcCHHHHHHH
Confidence 999999999975 8999986421 0 11111111 11222222 2443222 22223 5999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 999999999999999999999999999999999998753 6899999999999976 79999999999987
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=342.42 Aligned_cols=197 Identities=25% Similarity=0.379 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|+. . ..|+||+|++|+.+||+||||||||||+++|+|+++ .+|+|.+||.++...+.. ++.++||
T Consensus 2 l~~~~l~~~~~~-~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEEE
Confidence 689999999964 2 249999999999999999999999999999999985 789999999998876542 5789999
Q ss_pred eCCCCCCCc-cHHhhcccCC--C-----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE--K-----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~--~-----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.+|.+ |++||+.+.. . ..++++.++++..++.+++ ......||||||||++||||+++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL----------ARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHH----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 999999985 9999997531 1 1133456666666554443 33345899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+++...+.+.|.++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 210 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW 210 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 7899999999999865 89999999999987
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=346.97 Aligned_cols=199 Identities=25% Similarity=0.340 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.+||+++.+.+.. ++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceEEE
Confidence 478999999964 479999999999999999999999999999999999985 679999999999876543 6789999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|.+ |++||+.+.. ..+ ++++.++++.. |++..+......||||||||++||||+++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~lS~G~~qrl~laral~~ 147 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV----------QLEGYANRKPSQLSGGQQQRVAIARALVN 147 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999975 9999997531 112 22333334433 44444455567999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++
T Consensus 148 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999999999998764 7899999999999865 89999999999987
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=348.84 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++... +..++||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 789999999964 57999999999999999999999999999999999997 5789999999998643 3469999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++.+|. .|++||+.+.. ..+..+.. ..+.+.++. -|++........+||||||||++|||||+++|++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~-~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKK-VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHH-cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999987 69999997531 22222111 111222222 2444445556789999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEe--CCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMD--SGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~--~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999874 37999999999999865 99999998 599998
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=359.61 Aligned_cols=204 Identities=22% Similarity=0.277 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCC---------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh
Q psy1502 340 KIEFQNTNVRYLS---------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~ 409 (597)
-|+++|++++|+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ ++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 3899999999952 2469999999999999999999999999999999999974 78999999999998875
Q ss_pred H---HHhcCcEEEeCCCC--CCC-ccHHhhccc----CCCCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCC
Q psy1502 410 S---KLRSNISIIPQDPV--LFS-GTLRKNLDP----FEKYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475 (597)
Q Consensus 410 ~---~lr~~I~~V~Q~~~--LF~-gTI~eNI~~----~~~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~L 475 (597)
. .+|++|+||+|+|. |+. .|+.+|+.. ....+. +++.++++.+++.+ .........|
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~p~~L 155 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP---------EHYDRYPHMF 155 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh---------HHhcCCCccC
Confidence 3 56789999999984 555 599998852 112222 23444444444421 1223446789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||+||||++||..+...|.+.|.++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988754 7899999999999975 99999999999998
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=326.47 Aligned_cols=163 Identities=29% Similarity=0.410 Sum_probs=150.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++++++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.++|. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 478999999975567999999999999999999999999999999999997 47899999873 689999
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+|++.++++|++||+.++ ....||||||||++||||++++|++||||
T Consensus 70 ~q~~~~~~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred CCCCccccccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999763 34789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
|||++||+++...+.+.|.++ ++|+|++||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999987 589999999999888899999998864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=358.39 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=170.1
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC----CceEEEcceeCCCCChHHH
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~di~~~~~~~l 412 (597)
-++++|++++|+. ..++|+||||+|++||++||||+||||||||+++|+|++++ +|+|.+||.|+..++...+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 24699999999999999999999999999999999999853 8999999999999887765
Q ss_pred h----cCcEEEeCCC--CCCC-ccHHhhccc----CCCCChHHH----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh
Q psy1502 413 R----SNISIIPQDP--VLFS-GTLRKNLDP----FEKYPDYVL----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477 (597)
Q Consensus 413 r----~~I~~V~Q~~--~LF~-gTI~eNI~~----~~~~~~e~i----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG 477 (597)
+ ++|+||+|++ .++. .|+.+|+.. ....+.++. .++++.+++. ++ ...++.....|||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~------~~-~~~~~~~p~~LSg 164 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP------EA-RKRMKMYPHEFSG 164 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC------Ch-HHHhcCCcccCCH
Confidence 3 4899999998 4554 588887742 222333332 2222222211 11 2345677889999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||++|||||+.+|++||+|||||+||+.+...|.+.|.++.+ +.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999988765 789999999999997 599999999999999
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=351.23 Aligned_cols=203 Identities=24% Similarity=0.293 Sum_probs=168.6
Q ss_pred EEEEeeEEEeCC--------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLS--------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
|+++||+++|+. ..++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+...
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 84 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY 84 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhh
Confidence 899999999952 246999999999999999999999999999999999998 57899999999997656666
Q ss_pred HhcCcEEEeCCCC--CCC-ccHHhhcccC----CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 412 LRSNISIIPQDPV--LFS-GTLRKNLDPF----EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 lr~~I~~V~Q~~~--LF~-gTI~eNI~~~----~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+++.|+||||++. +++ -|+.+|+.+. .... ++++.++++..++.+ -........||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~~LS~G~~ 155 (267)
T PRK15112 85 RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP---------DHASYYPHMLAPGQK 155 (267)
T ss_pred HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh---------HHHhcCchhcCHHHH
Confidence 6778999999985 444 4889998531 1112 233445555554421 112234468999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++||||++++|+||||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||++++|++|++++
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999998753 7899999999999986 99999999999987
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=349.79 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=173.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C--------CceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V--------EGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~--------~G~I~idg~di~~~~~~~ 411 (597)
|+++|++++|++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++ + +|+|.+||.++...+...
T Consensus 2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 689999999964 579999999999999999999999999999999999875 5 899999999998888888
Q ss_pred HhcCcEEEeCCCC-CCCccHHhhcccCC-C-------CCh---HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 412 LRSNISIIPQDPV-LFSGTLRKNLDPFE-K-------YPD---YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 412 lr~~I~~V~Q~~~-LF~gTI~eNI~~~~-~-------~~~---e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
+++.++||||++. +|+.|++||+.++. . .+. +.+.++++. .|+++.++.....|||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL----------AGATALVGRDVTTLSGGE 150 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH----------cCcHhhhcCCcccCCHHH
Confidence 8889999999986 67899999997632 1 111 112222222 366666777788999999
Q ss_pred HHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeC
Q psy1502 480 RQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDS 547 (597)
Q Consensus 480 rQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~ 547 (597)
|||++|||||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||++++|++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999 59999999999999999999999999998754 689999999999996 5999999999
Q ss_pred CeEEE
Q psy1502 548 GVAVV 552 (597)
Q Consensus 548 G~Ive 552 (597)
|+|++
T Consensus 231 G~i~~ 235 (272)
T PRK13547 231 GAIVA 235 (272)
T ss_pred CeEEE
Confidence 99987
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=366.53 Aligned_cols=188 Identities=29% Similarity=0.350 Sum_probs=160.2
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----hcCcEEEeCCCCCCC-c
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL----RSNISIIPQDPVLFS-G 428 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l----r~~I~~V~Q~~~LF~-g 428 (597)
.+|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.|+.+.+...+ +++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3899999999999999999999999999999999998 578999999999998876553 468999999999996 5
Q ss_pred cHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 429 TLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 429 TI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
|++||+.++. ..+. +++.++++.. |++........+||||||||++|||||+.+|+|||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~----------gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQV----------GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999998642 2222 2233344444 344344455679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 502 TANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||+||+.+...+++.|.++. .++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999998874 3789999999999985 599999999999987
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=353.68 Aligned_cols=204 Identities=23% Similarity=0.353 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++|++++|++ +.+|+|+||+|++||.+||+||+|||||||+++|+|++ |++|+|.+||.++.. +...+|+++||+
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~ 80 (301)
T TIGR03522 3 IRVSSLTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEECC-EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEe
Confidence 789999999964 56999999999999999999999999999999999987 578999999999976 445678999999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+|.+ |++||+.+.. ..+.++..+.+ .+.++. -|++.........||||||||++|||||+++|++
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~-~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV-----EEMIEL-VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-CCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999975 9999997532 12222222211 122222 2566556667789999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~ 212 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA 212 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998778999999999998875 99999999999997
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=364.58 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+. |++|+|.+||.++.+.+. .++.|||
T Consensus 19 ~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 19 LLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 4999999999964 56999999999999999999999999999999999998 578999999999987664 5789999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.||. .|++|||.++. ..+..+ +.++++.. |++.........||||||||+||||||+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l----------~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLV----------HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998742 233332 23333333 3443444556789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|++|+||||||+||+.+...+.+.|.++.+ +.|+|+|||+++.+. -||+|++|++|+|++
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999988877643 689999999999875 599999999999998
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=334.27 Aligned_cols=177 Identities=22% Similarity=0.339 Sum_probs=157.7
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHh
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr 413 (597)
.|+++|++|+|++ ++++|+|+||++++|+.++|+||||||||||+++|+|++ |++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 3899999999964 257999999999999999999999999999999999975 46899999999885 5678
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++++|++|++.+|.+ |++||+.+.. .+ . .||||||||++||||++++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~------------~-----------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LL------------R-----------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HH------------h-----------cCCHHHhHHHHHHHHHhcC
Confidence 899999999988875 9999997421 00 0 8999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--HhhcCEEEEEeC-CeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--IMDSDKVLVMDS-GVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i~~~D~Iivl~~-G~Ive 552 (597)
|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++. ...||+|++|++ |++++
T Consensus 127 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 127 PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 999999999999999999999999988754 7899999999984 467999999999 99975
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=334.65 Aligned_cols=185 Identities=26% Similarity=0.343 Sum_probs=158.7
Q ss_pred EEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHh
Q psy1502 341 IEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr 413 (597)
+.++||+|.|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++...+ ..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 689999999963 4579999999999999999999999999999999999874 5899999999998765 4567
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++++|++|++.+|. .|++||+.+..... ..+....||||||||++||||++++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence 89999999998887 59999997632110 1234468999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccC-chhH-hhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHR-LHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHr-lsti-~~~D~Iivl~~G~Ive 552 (597)
|++|||||||++||+++.+.+.+.|.++.+ +.|+|+++|+ ++.+ +.||++++|++|++++
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999999999999999999999999998764 4676766554 5565 5699999999999975
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=344.85 Aligned_cols=206 Identities=20% Similarity=0.269 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEccee-----CCCCChHH--
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDID-----TEDVPLSK-- 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~d-----i~~~~~~~-- 411 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 3899999999964 56999999999999999999999999999999999998 578999999998 87776544
Q ss_pred --HhcCcEEEeCCCC--CCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHH
Q psy1502 412 --LRSNISIIPQDPV--LFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 412 --lr~~I~~V~Q~~~--LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQ 481 (597)
+++.++||||++. ++. .|+.+|+.+. ...+..++.+ .+.++++.+ |++ +.....+..|||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV-EIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc-CCChhHHhCCCccCCHHHHH
Confidence 3668999999984 443 5888888531 1111122211 224455443 454 4677888999999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+++...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988754 789999999999997 599999999999987
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=330.11 Aligned_cols=170 Identities=28% Similarity=0.459 Sum_probs=154.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCC-hHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP-LSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~-~~~lr~~I~~ 418 (597)
|+++|++++| +|+|+||++++|+.++|+||||||||||+++|+|+++ ++|+|.+||.++...+ .+.+|++++|
T Consensus 5 l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 5 LEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 8999999999 8999999999999999999999999999999999985 7899999999998887 3457889999
Q ss_pred EeCCC----CCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDP----VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~----~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
++|++ .+++.|++||+.+... ||||||||++||||++++|+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~~qrl~la~al~~~p~ 124 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGNQQKVVLARWLARDPR 124 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHHHHHHHHHHHHccCCC
Confidence 99995 3445799999976311 99999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
+|||||||++||+++...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 125 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999875 37899999999999876 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=347.61 Aligned_cols=202 Identities=20% Similarity=0.292 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C---CceEEEcceeCCCC-----ChH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V---EGVIKIDDIDTEDV-----PLS 410 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~---~G~I~idg~di~~~-----~~~ 410 (597)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ + +|+|.+||.++... +..
T Consensus 4 ~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCC-eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 3899999999964 579999999999999999999999999999999999984 3 49999999998654 245
Q ss_pred HHhcCcEEEeCCCCCCC-ccHHhhcccCCC-C-----------C---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCC
Q psy1502 411 KLRSNISIIPQDPVLFS-GTLRKNLDPFEK-Y-----------P---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTN 474 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~-~-----------~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~ 474 (597)
.+++.++|+||++.+|. .|++||+.++.. . . .+++.++++.. |++.........
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~ 152 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV----------GMVHFAHQRVST 152 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc----------CCHHHHhCCccc
Confidence 67889999999999887 599999975321 0 0 11233333333 343344556678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Iv 551 (597)
||||||||++||||++.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998863 689999999999864 59999999999998
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
+
T Consensus 233 ~ 233 (262)
T PRK09984 233 Y 233 (262)
T ss_pred E
Confidence 7
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.45 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=167.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c----CCceEEEcceeCCCCChHHHhc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E----VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~----~~G~I~idg~di~~~~~~~lr~ 414 (597)
.|+++||+++| ++++|+|+||+|++||.++|+|+||||||||+++|+|++ | ++|+|.+||.++... +..++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 48999999999 357999999999999999999999999999999999987 4 679999999998632 22346
Q ss_pred CcEEEeCCCC-CCC--ccHHhhccc-----CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPV-LFS--GTLRKNLDP-----FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~-LF~--gTI~eNI~~-----~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
.|+||||++. .|. .|+.+|+.. +....++++.++++..++.+ .++.++.....||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN-------AARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC-------hhhhhhcCCcccCHHHHHHHHHH
Confidence 8999999985 454 588888643 11223344555555444422 22356777889999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 689999999999986 599999999999987
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=355.30 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ ..+|+|+||+|++|+.+||+||+|||||||+++|+|++ |++|+|.++|.++...+ ..+++.|||
T Consensus 41 ~i~i~nl~k~y~~-~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~ 118 (340)
T PRK13536 41 AIDLAGVSKSYGD-KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGV 118 (340)
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEE
Confidence 4999999999964 46999999999999999999999999999999999987 57899999999997654 467899999
Q ss_pred EeCCCCCC-CccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLF-SGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF-~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+| +.|++||+.+.. ..+.++..+.+ .++++. .|++-.......+||||||||++|||||+.+|+
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~-~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEF-ARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999987 569999997521 22323222221 122221 233323333445899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|+|+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998754 7999999999999965 99999999999997
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=357.83 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHH
Q psy1502 341 IEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 341 I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~l 412 (597)
|+++|++++|+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ ++|+|.+||+++.+.+...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999952 3469999999999999999999999999999999999863 57999999999998887655
Q ss_pred h----cCcEEEeCCCCC--C-CccHHhhcccC---C---C--CC-----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCC
Q psy1502 413 R----SNISIIPQDPVL--F-SGTLRKNLDPF---E---K--YP-----DYVLWTALQEVELKDMIMEGAGLNMTVYEGG 472 (597)
Q Consensus 413 r----~~I~~V~Q~~~L--F-~gTI~eNI~~~---~---~--~~-----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G 472 (597)
+ +.|+||+|++.. + ..|+.+|+... . . .. ++++.++++..++.+. ........
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~-------~~~~~~~p 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH-------KDAMRSFP 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh-------HHHHhCCc
Confidence 3 479999999973 3 35899998521 0 0 01 1234444444444221 12234556
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
..||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 6899999999999965 99999999999
Q ss_pred EEE
Q psy1502 550 AVV 552 (597)
Q Consensus 550 Ive 552 (597)
|+|
T Consensus 237 ive 239 (330)
T PRK15093 237 TVE 239 (330)
T ss_pred EEE
Confidence 998
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=331.83 Aligned_cols=178 Identities=30% Similarity=0.435 Sum_probs=158.2
Q ss_pred cEEEEeeEEEeCC-----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--c-CCceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRYLS-----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--E-VEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~-~~G~I~idg~di~~~~~~~ 411 (597)
.|+++||+|+|++ .+++|+|+||++++|+.++|+||||||||||+++|+|++ + .+|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 3899999999975 367999999999999999999999999999999999987 5 68999999999875 36
Q ss_pred HhcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 412 LRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+++.++|++|++.+|. .|++||+.+... + . .||||||||++||||++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--------------~-------~-----------~LS~G~~qrv~laral~ 127 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--------------L-------R-----------GLSGGERKRVSIALELV 127 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--------------h-------c-----------cCCHHHHHHHHHHHHHH
Confidence 7889999999999987 599999854210 0 0 89999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCch-hH-hhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLH-TI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrls-ti-~~~D~Iivl~~G~Ive 552 (597)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++ .+ ..||++++|++|++++
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 99999999999999999999999999998753 789999999997 45 4599999999999975
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=347.30 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCC--------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh--
Q psy1502 341 IEFQNTNVRYLS--------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-- 409 (597)
Q Consensus 341 I~f~nVsf~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-- 409 (597)
|+++||+|+|+. ++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 889999999963 467999999999999999999999999999999999997 578999999999988765
Q ss_pred -HHHhcCcEEEeCCCC--CC-CccHHhhcccC-C---CCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHH
Q psy1502 410 -SKLRSNISIIPQDPV--LF-SGTLRKNLDPF-E---KYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQR 480 (597)
Q Consensus 410 -~~lr~~I~~V~Q~~~--LF-~gTI~eNI~~~-~---~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQr 480 (597)
..+++.++||+|++. ++ +.|+++|+.+. . ..+.+ .....+.+.+.. .|+++ ........||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRA-VDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHH-cCCChhHhhCCCccCChHHH
Confidence 346889999999983 44 47999998542 1 11111 112223344443 36764 56777889999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||++..+.. ||++++|++|++++
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999999999988754 7899999999999975 99999999999987
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=350.50 Aligned_cols=202 Identities=26% Similarity=0.434 Sum_probs=177.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+.+|+..+.+|+||||+|++|+.+|++||+|||||||+++|+|+. |++|+|.++|.|...- ...++++|||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 4789999999964567999999999999999999999999999999999987 6889999999998766 6788999999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---C----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---K----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||+|.++. -|++||+.+.. . ..++.+.++++..++.+. -...-..||+|||||++||+||+
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK----------ANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh----------hCcchhhcCHHHHHHHHHHHHHh
Confidence 999999886 59999997531 1 224556667666665431 13445789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCC--cEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~--~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.++ +|+++.||.++.+.. ||+|++|++|+++.
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999998763 699999999999987 99999999999998
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=344.19 Aligned_cols=206 Identities=22% Similarity=0.313 Sum_probs=171.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEE------cceeCCCCChHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI------DDIDTEDVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~i------dg~di~~~~~~~l 412 (597)
.|+++|++++|++ +++|+|+||++++||.+||+|++|||||||+++|+|+++ ++|+|.+ +|.++...+...+
T Consensus 10 ~i~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYIND-KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecCC-ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 4899999999964 569999999999999999999999999999999999984 6655554 4577777777788
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccCC---CC-ChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPFE---KY-PDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~~---~~-~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|+.++|+||++.+|.+ |++||+.++. .. ++++ +.++++..++.+++ +......+..||||||||+
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV------YDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc------hhhhcCCcccCCHHHHHHH
Confidence 9999999999999975 9999998531 12 2222 23333333332211 1234567789999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++.+|+++||||||++||+.++..+.+.|.++..++|+|++||+++.+. .||++++|++|++++
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998877899999999999994 699999999999987
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=335.44 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=160.8
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHHhcCcE
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKLRSNIS 417 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~lr~~I~ 417 (597)
++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|++ |++|+|.++|.++..++. +.+++.++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4799999964 56999999999999999999999999999999999987 578999999999765442 24678999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
||+|++.+|. .|++||+.+.. ..+ ++++.++++..++ +........+||||||||++|||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL----------NLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc----------hhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999997 69999997531 112 2233444444443 3334455678999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl 545 (597)
+++|++|||||||++||+++...+.+.|+++.+ ++|+|++||++..+..||+|++|
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999988754 78999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=353.19 Aligned_cols=192 Identities=24% Similarity=0.352 Sum_probs=162.0
Q ss_pred EeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 349 ~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++.. ....+|++|+||||++.+|.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 464 356999999999999999999999999999999999987 578999999999876 44567889999999999997
Q ss_pred c-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 428 G-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 428 g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
. |++||+.+.. ..+.. ++.++++.. |++.........||||||||++|||||+++|++||||
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELF----------ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5 9999997531 22222 233333333 3333344456789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999998875 36899999999999975 99999999999997
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=339.02 Aligned_cols=198 Identities=26% Similarity=0.368 Sum_probs=168.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.++|.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 478999999964 3899999999999999999999999999999999987 468999999999987654 36899999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|. .|++||+.+.. ..+ ++++.++++..++.+ .+......||||||||++||||+++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH----------LLNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh----------HHhcCcccCCHHHHHHHHHHHHHHc
Confidence 99999995 79999997531 122 223344444444433 3444557899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++++|||||++||+.+.+.+.+.|+++.. ++|+|++||++..+.. ||+|++|++|++++
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998754 7899999999999875 99999999999987
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=333.70 Aligned_cols=201 Identities=23% Similarity=0.328 Sum_probs=166.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHHhcC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~lr~~ 415 (597)
+++ ||+++|++. .+ |+||+|++ |.++|+||||||||||+++|+|++ |++|+|.++|.++.+.+ ...+++.
T Consensus 2 ~~~-~l~~~~~~~-~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPDF-TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCCe-ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 355 999999653 34 99999999 999999999999999999999997 57899999999986532 3456789
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++||||++.+|. .|++||+.+... .+.++ ....+.++++. -|++.........||||||||++||||++.+|
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDL-LGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHH-cCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 999999999996 599999976421 12111 11122333333 35666667778899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999988754 689999999999986 599999999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=356.69 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHHHhcC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~lr~~ 415 (597)
|++ ||+++|++ . .+ |+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+. +...++++
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 677 99999964 2 23 999999999999999999999999999999997 5789999999998753 24456889
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|+||+|++.+|. .|++||+.++. ...++++.++++..++ +.........||||||||++|||||+++|
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl----------~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGI----------EPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCC----------chhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999999999996 69999998752 2334445555555444 33445556799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999988764 6899999999998865 99999999999987
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=334.50 Aligned_cols=197 Identities=26% Similarity=0.355 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++ +++|+|+||++++||.+||+||||||||||+++|+|++ |++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 478999999964 57999999999999999999999999999999999987 57899999999876432 3589999
Q ss_pred eCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||++.+|. .|++||+.+. ...+++++.++++..++.++ .......||||||||++||||++++|++
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT----------GKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH----------HhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 6999999752 12344555555555554433 3334568999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|.++.+ ++|+|++||++..+. .||+|++|++|++++
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999999999999999999988753 689999999999985 599999999999987
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=324.19 Aligned_cols=174 Identities=30% Similarity=0.462 Sum_probs=156.5
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.+||.++...+...+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999965 56999999999999999999999999999999999998 57899999999999988888899999999
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
| +++..++.++ +......||||||||++||||++++|+++||||
T Consensus 80 q--------------------------~l~~~gl~~~----------~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 80 Q--------------------------ALELLGLAHL----------ADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred H--------------------------HHHHcCCHhH----------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9 5555555443 234567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
||++||+++...+.+.|.++.+ ++|+|++||+++.+ ..||++++|++|++++
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999998765 68999999999998 5599999999999875
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=335.25 Aligned_cols=200 Identities=26% Similarity=0.360 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce---eCCCCChHHHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI---DTEDVPLSKLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~---di~~~~~~~lr~~ 415 (597)
+|.++|++..|+. .++++||||+|+.||.+|+.||||||||||+++|+|+. |+.|.|.+||. |.+... .-.++
T Consensus 2 ~i~i~~~~~~~~~-~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhccc-ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 4788999999864 46899999999999999999999999999999999986 78999999999 655533 33578
Q ss_pred cEEEeCCCCCC-CccHHhhcccCCC-----CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 416 ISIIPQDPVLF-SGTLRKNLDPFEK-----YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 416 I~~V~Q~~~LF-~gTI~eNI~~~~~-----~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
||+|+|+.-|| +.||++||+||-. .++ .++.+.++.+++. |+. ..-..+||||||||+|+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-------~la---~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-------GLA---DRYPAQLSGGQRQRVAL 148 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-------chh---hcCchhcChHHHHHHHH
Confidence 99999999999 5899999998742 222 2233334444332 221 23367999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||...|++|+||||++|||+.-.+.+.+-|++... +.|+++|||+...+. .||||+||++|+|..
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 9999999999999999999999999999888877654 689999999998875 599999999999987
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=315.28 Aligned_cols=158 Identities=29% Similarity=0.484 Sum_probs=146.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh-HHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL-SKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~-~~lr~~I~~ 418 (597)
|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||.++...+. +..+++++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 478999999965 469999999999999999999999999999999999985 78999999999998875 456788999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
++| ||||||||++||||++++|++|||
T Consensus 80 ~~q-----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 80 VYQ-----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999 999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||++||+++...+.+.|+++. ++.|+|++||++..+.. ||++++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998874 37899999999998764 99999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=326.84 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=157.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
++++|++++|++ +++|+|+||++++||.+||+|+||||||||+++|+|+ + |++|+|.+||.++.+.+.... |.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCC-EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 478999999974 5799999999999999999999999999999999998 3 578999999999998876654 5569
Q ss_pred EEEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||||++.+|++ |+++|+ .. ....||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~~~~~~~~~~~l------------------------~~----------~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL------------------------RY----------VNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEeecChhhccCccHHHHH------------------------hh----------ccccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999875 555544 00 1247999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh--hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM--DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~--~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999998754 789999999999998 599999999999987
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=339.17 Aligned_cols=206 Identities=19% Similarity=0.276 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEccee-----CCCCChHH--
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDID-----TEDVPLSK-- 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~d-----i~~~~~~~-- 411 (597)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 3899999999964 46999999999999999999999999999999999998 478999999988 77666543
Q ss_pred --HhcCcEEEeCCCC--C-CCccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHH
Q psy1502 412 --LRSNISIIPQDPV--L-FSGTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 412 --lr~~I~~V~Q~~~--L-F~gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQ 481 (597)
+++.|+|++|++. + +..|+.+|+... ......+. ...+.++++.+ |++ +........|||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l-~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV-EIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc-CCChhhhhcCchhcCHHHHH
Confidence 3467999999985 2 345888888531 11111111 12334555554 454 5677888999999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||+++|++|||||||++||+.+...+.+.|.+..+ +.|+|+|||++..+.. ||++++|++|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988643 7899999999999985 99999999999987
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=341.41 Aligned_cols=198 Identities=23% Similarity=0.332 Sum_probs=163.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh-cCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR-SNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr-~~I~ 417 (597)
.|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.. ..+ +.++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEE
Confidence 4899999999975567999999999999999999999999999999999997 578999999998752 233 4699
Q ss_pred EEeCCCCC---CCccHHhhcccCC-------CC----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDPVL---FSGTLRKNLDPFE-------KY----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~~L---F~gTI~eNI~~~~-------~~----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|+||++.+ +..++++|+.++. .. .++++.++++..++.++ .......||||||||+
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF----------RHRQIGELSGGQKKRV 151 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH----------hcCCcccCCHHHHHHH
Confidence 99999865 4568999986421 00 12234444555544333 2334467999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|||||+++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||+++++ +|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 999999999999999999999999999999999988754 789999999999875 59999777 899987
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=354.28 Aligned_cols=189 Identities=24% Similarity=0.301 Sum_probs=159.9
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce----eCCCCChHHHh----cCcEEEeCCCC
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI----DTEDVPLSKLR----SNISIIPQDPV 424 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~----di~~~~~~~lr----~~I~~V~Q~~~ 424 (597)
..+|+|+||+|++||+++|+|+||||||||+++|+|++ |++|+|++||. ++...+...++ ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999998 57899999996 67777665543 58999999999
Q ss_pred CCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 425 LFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 425 LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+|+ .|++||+.++. ..+.+ ++.++++..++.+ ........||||||||++|||||+.+|+||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~----------~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ----------WADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 997 79999998642 22222 2344444444433 334445689999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
|||||||+||+.+...+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999988764 78999999999997 5599999999999998
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=335.38 Aligned_cols=211 Identities=18% Similarity=0.250 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHh-cCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLR-SNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr-~~I 416 (597)
|+++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+. |++|+|.+||.++..++....+ +.+
T Consensus 2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 789999999974 56999999999999999999999999999999999983 5789999999999888776655 579
Q ss_pred EEEeCCCCCCCc-cHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc---CCCch-hhhCCC-CCCChhHHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG---AGLNM-TVYEGG-TNFSVGQRQLICLARAI 489 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l---~GldT-~vge~G-~~LSGGQrQRIaIARAl 489 (597)
+||+|++.++.. |..+++... +........+.+...++.+++... .|+.. ...... ..||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999987764 444443211 000000000011111122222221 12211 111122 37999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
+++|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence 999999999999999999999999999988754 6899999999999987 89999999999987
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=351.28 Aligned_cols=199 Identities=23% Similarity=0.315 Sum_probs=165.2
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHHhcCcEEE
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKLRSNISII 419 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~lr~~I~~V 419 (597)
|++++|++ .. + |+||+|++|+.++|+||||||||||+++|+|++ |++|+|.+||.++...+ ...+++.|+||
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 89999964 33 4 999999999999999999999999999999997 57899999999987543 34568899999
Q ss_pred eCCCCCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
+|++.+|. .|++||+.++. .....+.. ..+.+.++. -|++.........||||||||++|||||+.+|++||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~-~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIEL-LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999997 49999998742 21211110 111222222 355555666778999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999998764 6899999999999865 99999999999987
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=324.01 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=164.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|++ |.+|+|.++|.++...+ ..++++++|+
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 478999999964 56999999999999999999999999999999999998 47899999999987543 4678899999
Q ss_pred eCCCCCC-CccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||++.++ +.|++||+.+.. ..+++++.++++..++.++. ......||||||||++||||++++|++||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE----------DRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh----------cCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999887 589999997643 33556677777777765432 22346899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH-hhcCEEEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI-MDSDKVLVM 545 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti-~~~D~Iivl 545 (597)
|||||++||+.+...+.+.|.++.+ ++|+|++||+...+ ..||+.+++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999987653 78999999986665 568999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.67 Aligned_cols=200 Identities=20% Similarity=0.302 Sum_probs=166.7
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+++||++. .+|+|+||+|++|+++||+|+||||||||+++|+|+++++|+|.+||.++...+...+++.++||||
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 46777774 2899999999999999999999999999999999998889999999999998888888889999999
Q ss_pred CCC-CCCccHHhhcccCCC--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-------
Q psy1502 422 DPV-LFSGTLRKNLDPFEK--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR------- 491 (597)
Q Consensus 422 ~~~-LF~gTI~eNI~~~~~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~------- 491 (597)
++. ++..|+++|+.++.. .+.++. ...+++.++. -|++.........||||||||++|||||+.
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p 150 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEA-LGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150 (248)
T ss_pred cCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHH-cCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCC
Confidence 985 456899999986421 111111 1112233333 245545566678999999999999999997
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 679999999999999999999999998875 4789999999999775 599999999999987
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=325.33 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=160.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.. ....++++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 689999999964 56999999999999999999999999999999999998 578999999999875 345678999999
Q ss_pred eCCCCCC-CccHHhhcccCCC--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFEK--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||++.++ ..|++||+.++.. ..+.++.++++..++. .........||||||||++||||++++|++|
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE----------HLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc----------hhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999987 5799999986421 1222333333333332 2223333579999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
||||||++||+.+...+.+.|+++. .++|+|++||+...+.+||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999863 47899999999999999997654
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=325.56 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=164.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.... ..++++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 689999999964 56999999999999999999999999999999999987 57899999999987654 4567899999
Q ss_pred eCCCCCCC-ccHHhhcccCC---C-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---K-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+|++.++. .|++||+.+.. . .+++++.++++..++.++. ......||||||||++||||++++|+
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE----------DVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh----------hCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998886 69999997532 1 2344566666666654432 33456899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhc-CEEEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDS-DKVLVM 545 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~-D~Iivl 545 (597)
+|||||||++||+++...+.+.|.++. .++|+|++||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998864 368999999999999665 777776
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=305.23 Aligned_cols=192 Identities=26% Similarity=0.379 Sum_probs=167.9
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
++.++|+|+||++.+||.+||.||||||||||++.++-|. |++|++++.|.|++.++++.+|++|+|+-|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 4567999999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred Hhhccc-C----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCC
Q psy1502 431 RKNLDP-F----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505 (597)
Q Consensus 431 ~eNI~~-~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 505 (597)
.||+.| + +..+.......++++++ -++.+..+-.+||||+||||||+|-|---|+||+|||+||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l---------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL---------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC---------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999975 2 12333333333333333 345566778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccCchh-HhhcCEEEEEeCCeEEE
Q psy1502 506 DPKTDLLIQRTIRKKF--ADCTVLTIAHRLHT-IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 506 D~~te~~I~~~l~~~~--~~~TvI~IaHrlst-i~~~D~Iivl~~G~Ive 552 (597)
|+.+.+.|.+.|.++. ++..++-|||.... ++++|+.+.+-.|++-+
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999998887 46799999999988 88999999999998755
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=332.94 Aligned_cols=190 Identities=29% Similarity=0.443 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 3899999999964 56999999999999999999999999999999999987 5789999987 357999
Q ss_pred EeCCCCCCC---ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPVLFS---GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~LF~---gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||++.++. .|+++|+......+++++.++++..++.++.. .....||||||||++||||++++|++
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID----------APMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred eccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998875 48999986544455677778887777765532 23568999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++ +|++
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 999999999999999999999988754 789999999999985 5999999975 6776
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=332.85 Aligned_cols=209 Identities=21% Similarity=0.261 Sum_probs=168.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHHhc-C
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKLRS-N 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~lr~-~ 415 (597)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ + |++|+|.+||.++..++...+++ .
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 3899999999964 4699999999999999999999999999999999997 4 57899999999999888766655 4
Q ss_pred cEEEeCCCCCCCc-cHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCC-CCChhHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGT-NFSVGQRQLICL 485 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~-~LSGGQrQRIaI 485 (597)
++|++|++.+|.+ |+.+|+.+... ..+.+..+.. ..+.+.++. -|+. +.+..... .||||||||++|
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKL-VGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHH-cCCchhhhccccccCCCHHHHHHHHH
Confidence 8999999999985 88999864211 0100000000 011122222 2343 33444444 599999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
|||++++|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999988754 7899999999999875 89999999999987
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=362.87 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeCCCCChHH-HhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDTEDVPLSK-LRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di~~~~~~~-lr~~ 415 (597)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++...+... +|+.
T Consensus 5 ~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFGG-VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeCC-eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 3899999999964 579999999999999999999999999999999999875 4899999999998777554 4678
Q ss_pred cEEEeCCCCCCC-ccHHhhcccCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
++||||++.+|. .|++||+.++.. .+.++..+ .+.++++.+ |++.........||||||||++||||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL-KLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc-CCCCCcccchhhCCHHHHHHHHHHHH
Confidence 999999999887 599999976421 12222211 122333332 44434455567899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999998874 46899999999999875 99999999999987
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=321.01 Aligned_cols=192 Identities=23% Similarity=0.290 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.. .. ++++++|+
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYL 78 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEe
Confidence 789999999964 46999999999999999999999999999999999997 578999999998753 22 78899999
Q ss_pred eCCCCCC-CccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLF-SGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF-~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++.++ +.|++||+.+.. ...++++.++++..++.++. ......||||||||++||||++++|++
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA----------HLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH----------cCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9988776 579999997532 23345566777766665432 222347999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|||||||++||+.+...+.+.|.++. +++|+|++||++..+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999998763 47899999999999988 99988854
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=327.84 Aligned_cols=185 Identities=25% Similarity=0.347 Sum_probs=152.8
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNL 434 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI 434 (597)
|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999997 578999999999876543 2489999999997 6999999
Q ss_pred ccC-----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 435 DPF-----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 435 ~~~-----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
.+. ...++++..+. +.++++. -|++.........||||||||++|||||+.+|++|||||||++||+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI-----VEEHIAL-VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred HHHHHhcccCCCHHHHHHH-----HHHHHHH-cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 753 12232222111 1122222 244444555667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 510 DLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 510 e~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 9999999988753 6899999999998865 99999999999987
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=321.98 Aligned_cols=194 Identities=21% Similarity=0.214 Sum_probs=161.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++|++++|++ +++++|+||+|++||.++|+|+||||||||+++|+|+++ ++|+|.++|+++... ..++.++|
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 4899999999964 469999999999999999999999999999999999985 789999999998753 34568999
Q ss_pred EeCCCCCCCc-cHHhhcccCC---CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE---KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~---~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|++.+|.+ |++||+.+.. ... ++.+.++++..+ +..........||||||||++||||++++|
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVG----------LAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcC----------ChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 9999996531 111 222333333333 322234445689999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeC
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDS 547 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~ 547 (597)
++|||||||++||+++.+.+.+.|.++. +++|+|++||+++.+. -||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999998754 3689999999999996 5899999874
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=326.83 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=155.3
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe-CCCCCC-CccH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP-QDPVLF-SGTL 430 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~-Q~~~LF-~gTI 430 (597)
+++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 46999999999999999999999999999999999987 5789999999987653 346788999997 666776 5799
Q ss_pred HhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 431 RKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 431 ~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
+||+.+.. ..+.++..+.++ +.++. .|++.........||||||||++||||++.+|++|||||||++||+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~-~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD-----ELSEL-LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99996531 233333322211 11221 1333333334567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 508 KTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 508 ~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 999999999998753 6899999999998865 89999999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=360.81 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+++||+++|++ +++|+|+||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++...+. +.+|++|+
T Consensus 4 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPG-VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECC-EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 3899999999964 56999999999999999999999999999999999998 578999999999876543 45688999
Q ss_pred EEeCCCCCCCc-cHHhhcccCC-----C-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE-----K-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~-----~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
||||++.+|.+ |++||+.++. . .+..+..+ .+.++++.+ |++.........||||||||++|||||+
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL-GVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc-CCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 99999999875 9999998642 1 12222111 122333332 4433334456789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998874 36899999999999865 99999999999986
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=357.82 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh-cCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR-SNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr-~~I~ 417 (597)
.|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++...+...++ ..++
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999964 56999999999999999999999999999999999987 5789999999999887766654 5799
Q ss_pred EEeCCCCCCCc-cHHhhcccCCCCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEKYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||||++.+|.. |++||+.++.... ++++.++++.. |++.........||||||||++|||||+.+|
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL----------GCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc----------CCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998874 9999998742211 12233333322 3433344556789999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999988743 6899999999999865 99999999999987
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=321.88 Aligned_cols=470 Identities=15% Similarity=0.154 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHH----HHHHHHHHHHHHHHHHHHHH
Q psy1502 67 GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRI----LNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l----~~rit~D~~~i~~~~~~~~~ 142 (597)
..++.++++...+..+..+.......+...++.+.+++++++- ..||.=.+.++. =.|+++|++.....+.....
T Consensus 126 ~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~-~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s 204 (659)
T KOG0060|consen 126 FKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKG-FTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYS 204 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhcc-ceEEEecccccccCChHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444555555556666666667777777777776654 334432222222 36899999987776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLY-LFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAA 221 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e 221 (597)
+++.+++.++....-++...+|...+.+..-+ +...+.+.+.+..-+....+++...+..-.-.+...+.+.|--|+.+
T Consensus 205 ~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~ 284 (659)
T KOG0060|consen 205 NLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGG 284 (659)
T ss_pred hhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccC
Confidence 66666555554444444444444433332222 22233333333222222222222333333334455677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----H-HhhhhHHHH----HHHHHHHH
Q psy1502 222 KILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFF----F----F-ADIGGKVGL----AVTQTMTL 288 (597)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~-~~~~g~i~~----~~~~~~~~ 288 (597)
+.+....++..+..............|+.++.+++..+ ..++.++.. + . ..+...+.. -..++..+
T Consensus 285 ~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Yl-g~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~L 363 (659)
T KOG0060|consen 285 QVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYL-GGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYL 363 (659)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHH
Confidence 77766666555544443333333444444444433311 111100000 0 0 111111111 11222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C--C-C------CCCCCCC-----CCCCCCCCCcccEEEEeeEEEe
Q psy1502 289 MGVVQWAMRQAAEVENHMISVKRLVEYTKL----E--P-E------GNLSPNY-----EDENEIWPVLGKIEFQNTNVRY 350 (597)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~----~--~-~------~~~~~~~-----~~~~~~~~~~~~I~f~nVsf~Y 350 (597)
+..+..+......+.+-.+-..||-|+.+. . . + ...+... ......++....|+|++|+++=
T Consensus 364 i~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~t 443 (659)
T KOG0060|consen 364 ISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLST 443 (659)
T ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecC
Confidence 444444444444444444555666665431 1 0 0 0000000 0112234445679999999999
Q ss_pred CC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc
Q psy1502 351 LS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428 (597)
Q Consensus 351 ~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g 428 (597)
|+ ++.+.+|+||+|+.|+.+.|.||||||||+|++.|.||+| .+|.+.--...- -+.+-||||.|+.=.|
T Consensus 444 Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~G 515 (659)
T KOG0060|consen 444 PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLG 515 (659)
T ss_pred CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCCCCcccc
Confidence 87 5557778999999999999999999999999999999998 789997522111 0458899999999999
Q ss_pred cHHhhcccC--------CCCChHHHHHHHHHhcHHHHHHhcCCCchhhh-CCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 429 TLRKNLDPF--------EKYPDYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 429 TI~eNI~~~--------~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vg-e~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|+||-+.+- +.++|+++.+-++.+++.+.++..+|+|+++- +=..-||+||+||+|.||-+|.+|++-|||
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 999999642 24789999999999999988777799998776 447899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
|+|||+|.+.|..+.+-+++. +.|.|.|.||-|.-+.-|.++-|+.+
T Consensus 596 E~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred chhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 999999999999999999886 89999999999999999999999874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=357.87 Aligned_cols=205 Identities=19% Similarity=0.294 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.++...+... .+++|+|
T Consensus 5 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 5 LQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EEEeeeEEEeCC-eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 899999999964 57999999999999999999999999999999999987 57899999999997665444 4678999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. -|++||+.++.. .+..+..+ .+.+.++. -|+.........+||||||||++|||||+
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLAR-LNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHH-cCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 999998886 599999986421 11222111 11233333 24433334445689999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999998864 36899999999999864 99999999999987
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=318.00 Aligned_cols=191 Identities=20% Similarity=0.238 Sum_probs=159.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRGE-RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 478999999964 56999999999999999999999999999999999998 57899999999988765 4567899999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+|++.+|. .|++||+.+.. ...++++.++++..++.++. ......||||||||++||||++++|++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE----------DLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh----------cCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 69999997532 11133466666666665443 233468999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
+||||||++||+.+...+.+.|.++. .+.|+|++||+...+ .||+.+.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 99999999999999999999998863 478999999998543 3466554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=358.54 Aligned_cols=206 Identities=22% Similarity=0.340 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~ 417 (597)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++...+... .+++|+
T Consensus 5 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 3899999999964 56999999999999999999999999999999999987 57899999999998877654 456899
Q ss_pred EEeCCCCCCCc-cHHhhcccCCC-------C---ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEK-------Y---PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~-------~---~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
||||++.+|.. |++||+.++.. . +.++..+ .+.+.++. -|++........+||||||||++||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLR-VGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHH-cCCCCCcccchhhCCHHHHHHHHHH
Confidence 99999998874 99999976321 0 1111111 11222222 2443334445568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999988753 6899999999999975 99999999999986
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=327.22 Aligned_cols=188 Identities=27% Similarity=0.331 Sum_probs=153.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHHhcCcEEEeCCCC-CCC--
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV-LFS-- 427 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~-LF~-- 427 (597)
+|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.+||.++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 5889999999999999999999999999999999874 589999999998754 223468999999995 444
Q ss_pred ccHHhhcccC----CCCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 428 GTLRKNLDPF----EKYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 428 gTI~eNI~~~----~~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
.|+.+|+.+. .... ++++.++++..++.+ .++........||||||||++||||++++|+||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------hHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899997532 1111 122333333333221 1245667778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999998764 689999999999996 599999999999987
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=356.77 Aligned_cols=203 Identities=22% Similarity=0.356 Sum_probs=169.1
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcEEEe
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~~V~ 420 (597)
++|++++|++ +++|+|+||++++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+. +.+++.++|||
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 4789999964 56999999999999999999999999999999999997 578999999999976654 44678899999
Q ss_pred CCCCCCC-ccHHhhcccCC----C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 421 QDPVLFS-GTLRKNLDPFE----K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 421 Q~~~LF~-gTI~eNI~~~~----~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|++.+|. .|++||+.++. . .+.++..+ .+.+.++. .|++.........||||||||++|||||+++|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDE-LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHH-cCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 9998775 59999997642 1 12222221 12233333 25555555667899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 36899999999999864 99999999999987
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=347.64 Aligned_cols=203 Identities=27% Similarity=0.340 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCC------C----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEccee--CCC
Q psy1502 340 KIEFQNTNVRYLS------G----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDID--TED 406 (597)
Q Consensus 340 ~I~f~nVsf~Y~~------~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~d--i~~ 406 (597)
-++++|++..|.. . ..+++||||++++||++||||+||||||||+++|+|+. |++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 3789999999952 1 25899999999999999999999999999999999998 468999999987 333
Q ss_pred CChHHHhcCcEEEeCCCCCC---CccHHhhccc----CCCCC----hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCC
Q psy1502 407 VPLSKLRSNISIIPQDPVLF---SGTLRKNLDP----FEKYP----DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTN 474 (597)
Q Consensus 407 ~~~~~lr~~I~~V~Q~~~LF---~gTI~eNI~~----~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~ 474 (597)
-....+|+++-+|+|||+-. ..||+++|.- ..... .+.+.+.++.+ |+.. ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V----------gL~~~~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV----------GLPPEFLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc----------CCCHHHHhcCchh
Confidence 33556788999999999843 3799999852 11111 11233333333 3333 35566789
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
||||||||+||||||..+|++||+||||||||+-+.+.|.+.|.++.+ +.|.|+|||+++.++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988765 5899999999999986 9999999999999
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
|
T Consensus 510 E 510 (539)
T COG1123 510 E 510 (539)
T ss_pred E
Confidence 9
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=321.95 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCC------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEc--ce--eCCCCCh
Q psy1502 341 IEFQNTNVRYLS------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKID--DI--DTEDVPL 409 (597)
Q Consensus 341 I~f~nVsf~Y~~------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~id--g~--di~~~~~ 409 (597)
|+++||+++|+. .+++|+|+||+|++||.++|+|+||||||||+++|+|++ |++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 146999999999999999999999999999999999998 478999998 42 6666665
Q ss_pred HH---H-hcCcEEEeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHH
Q psy1502 410 SK---L-RSNISIIPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQR 480 (597)
Q Consensus 410 ~~---l-r~~I~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQr 480 (597)
.. + ++.++||||++.+|. .|++||+.+. ...+.++..+ .+.++++.+ |++. .....+..||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL-NIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-CCchhhhhCCcccCCHHHH
Confidence 43 2 467999999999886 5999999642 1222222111 112222222 3322 12345779999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVM 545 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl 545 (597)
||++|||||+++|++|||||||++||+++...+.+.|+++.. ++|+|+|||++..+. .||+++.+
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999988753 789999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.89 Aligned_cols=207 Identities=27% Similarity=0.385 Sum_probs=170.5
Q ss_pred cEEEEeeEEEeCC----------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCCh
Q psy1502 340 KIEFQNTNVRYLS----------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~ 409 (597)
-|+++||+++|+. ++++|+|+||+|++|+++||+||||||||||+++|+|+++++|+|.+||.++...+.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 4899999999952 356999999999999999999999999999999999998889999999999987664
Q ss_pred H---HHhcCcEEEeCCC--CCCC-ccHHhhcccCC-----CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCCh
Q psy1502 410 S---KLRSNISIIPQDP--VLFS-GTLRKNLDPFE-----KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSV 477 (597)
Q Consensus 410 ~---~lr~~I~~V~Q~~--~LF~-gTI~eNI~~~~-----~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSG 477 (597)
. .+|++|+||||++ .+|. .|++||+.++. ..+..+..+ .+.++++. -|+. .........|||
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ-----QVIAVMEE-VGLDPETRHRYPAEFSG 428 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH-----HHHHHHHH-cCCCHHHHhcCCccCCH
Confidence 3 3577899999998 3665 59999997531 122111111 11233332 2443 234556679999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998753 6899999999999875 99999999999987
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=301.90 Aligned_cols=201 Identities=26% Similarity=0.382 Sum_probs=172.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+++.+++.+|++...+++||||+++.||.+||.|++||||||+++.|..|. |++|.|+|||.|.... +...|++||++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhccee
Confidence 678999999977555899999999999999999999999999999999976 8899999999999865 56689999999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+-+.-|+. .|.+|||.|+. +.++.+ +.+.-+..++.+ .+..+-.+||-|+|||++|||||.+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~----------~~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE----------YLDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH----------HHHHHHhhhchhhHHHHHHHHHHhc
Confidence 98888886 59999998742 344443 333333333333 3333444799999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||+|+|||||||+||.-+-..+++-+.++.. ++++|+-||-++.++ -||+++++.+|++|.
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~ 213 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL 213 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE
Confidence 9999999999999999999999999998876 899999999999998 699999999999998
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=356.04 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+...+++.++||
T Consensus 4 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 4 LQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 899999999964 45999999999999999999999999999999999987 5789999999988777777778889999
Q ss_pred eCCCCC---------CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 420 PQDPVL---------FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 420 ~Q~~~L---------F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+|++.+ +..|+++|+.++. ..++++.++++..++ +.........||||||||++|||||+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l----------~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGI----------TALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCC----------HhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 998753 2458899886531 122344444444443 33344556799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||++..+.+ ||+|++|++|+++.
T Consensus 152 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 152 SEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 6899999999999865 99999999999987
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=355.50 Aligned_cols=205 Identities=21% Similarity=0.347 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeCCCCChHH-HhcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDTEDVPLSK-LRSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di~~~~~~~-lr~~I 416 (597)
|+++|++++|++ +++|+|+||++++|+++||+||||||||||+++|+|+++ ++|+|.++|.++...+... +++.|
T Consensus 2 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGG-VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCC-eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 689999999964 569999999999999999999999999999999999975 4899999999998877544 46789
Q ss_pred EEEeCCCCCCC-ccHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~LSGGQrQRIaIAR 487 (597)
+||||++.+|. .|++||+.++.. .+.++..+ .+.+.++.+ |++... ......||||||||++|||
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL-QLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc-CCCCCcccCchhhCCHHHHHHHHHHH
Confidence 99999998887 499999976421 11122111 122333332 332221 1234589999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999988643 6899999999999875 99999999999987
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=314.08 Aligned_cols=187 Identities=22% Similarity=0.301 Sum_probs=156.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +.++ ++||+|++|+.+||+|++|||||||+++|+|++ |++|+|.+||.++.+.+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 789999999964 4455 599999999999999999999999999999987 57899999999987543 4569999
Q ss_pred eCCCCC-CCccHHhhcccCCC--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVL-FSGTLRKNLDPFEK--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+|++.+ |+.|++||+.+... ..++++.++++..++.+ .....+.+||||||||++||||++++|++|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD----------LLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh----------hhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998754 67899999976321 13344555555555443 344557799999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhhcCEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKK-FADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~-~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
||||||++||+++...+.+.|++. .+++|+|++||+++.++.||-+.
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999753 35799999999999999999763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=363.93 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=169.0
Q ss_pred cEEEEeeEEEeCC----------CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC
Q psy1502 340 KIEFQNTNVRYLS----------GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP 408 (597)
Q Consensus 340 ~I~f~nVsf~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~ 408 (597)
-|+++||+++|+. ..++|+||||+|++||++||||+||||||||+++|+|+. |++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 4899999999962 136999999999999999999999999999999999987 57899999999998775
Q ss_pred hH---HHhcCcEEEeCCCC--CCC-ccHHhhcccC---CCC-ChH----HHHHHHHHhcHHHHHHhcCCCc-hhhhCCCC
Q psy1502 409 LS---KLRSNISIIPQDPV--LFS-GTLRKNLDPF---EKY-PDY----VLWTALQEVELKDMIMEGAGLN-MTVYEGGT 473 (597)
Q Consensus 409 ~~---~lr~~I~~V~Q~~~--LF~-gTI~eNI~~~---~~~-~~e----~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~ 473 (597)
.. .+|++|+||+|+++ ++. .|+.+|+.+. ... +.+ ++.++++.. |++ ........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----------gL~~~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV----------GLLPEHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc----------CCCHHHhhCCcc
Confidence 43 46789999999984 665 6999998642 111 221 222233322 443 23445567
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
.||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988754 6899999999999975 999999999999
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
++
T Consensus 543 v~ 544 (623)
T PRK10261 543 VE 544 (623)
T ss_pred EE
Confidence 98
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=311.79 Aligned_cols=174 Identities=26% Similarity=0.354 Sum_probs=143.9
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC--CChHHHhcCcEEEeCCC--CCC
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED--VPLSKLRSNISIIPQDP--VLF 426 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~--~~~~~lr~~I~~V~Q~~--~LF 426 (597)
+++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.. .....+++.++||+|++ .+|
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4467999999999999999999999999999999999998 478999999999852 23456788999999998 588
Q ss_pred CccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 427 SGTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 427 ~gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+.|++||+.+.. ..+++ ++.++++..++ +.........||||||||++|||||+++|++||||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA----------SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc----------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 899999997631 23332 23344444443 33344455789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT 535 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst 535 (597)
|||++||+.+...+.+.|.++.+ ++|+|+|||++..
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999988754 6899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=358.43 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=167.6
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChH
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLS 410 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~ 410 (597)
-|+++||+++|++ .+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 3899999999963 2479999999999999999999999999999999999975 489999999999887654
Q ss_pred H---Hh-cCcEEEeCCCC--CCC-ccHHhhcccC----CCCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCC
Q psy1502 411 K---LR-SNISIIPQDPV--LFS-GTLRKNLDPF----EKYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475 (597)
Q Consensus 411 ~---lr-~~I~~V~Q~~~--LF~-gTI~eNI~~~----~~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~L 475 (597)
. +| ++|+||||++. ++. .|+++|+.+. ...+. +++.++++..++.++ ..........|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA-------AKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------HHHHhhCCccc
Confidence 3 34 58999999985 444 5899998531 12222 223334433333211 11234556799
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998875 36899999999999875 99999999999987
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=320.55 Aligned_cols=205 Identities=27% Similarity=0.364 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~~ 411 (597)
++++|++.+|... ..+++||||++++||++||||.|||||||+.+.|+|+.| .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999532 369999999999999999999999999999999999875 2599999999999999875
Q ss_pred H---h-cCcEEEeCCCC-CCC--ccHHhhcc----cCCCC-Ch----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCC
Q psy1502 412 L---R-SNISIIPQDPV-LFS--GTLRKNLD----PFEKY-PD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475 (597)
Q Consensus 412 l---r-~~I~~V~Q~~~-LF~--gTI~eNI~----~~~~~-~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~L 475 (597)
+ | +.||+|+|||. =|| -||.+-+. ..... +. ++..++++.+++.+- +..+..-...|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~-------~~~~~~YPhel 154 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP-------ERRLKSYPHEL 154 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH-------HHHHhhCCccc
Confidence 4 3 48999999986 233 35555542 21122 12 234445555554322 22344556899
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||+.||-||+.+|++||-||||+|||..+.+.|.+-|+++.+ +.|+|+|||++..+.. ||||+||..|+|||
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 99999999999999999999999999999999999999999988875 7899999999999865 99999999999999
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=303.69 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=176.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
++++|++-.|.. -++|++|||++++||.++++||+|+|||||++.|+|+.+ .+|+|.++|.|+...+++.. |.-|+|
T Consensus 4 L~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 4 LEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred eeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 789999999964 579999999999999999999999999999999999986 58999999999999987764 667999
Q ss_pred EeCCCCCCC-ccHHhhcccCCCC-ChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEKY-PDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~~-~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
|||.-.+|. -|++|||..+... .+++-.+ .. -|.+-++ .-+......+|.+|||||+|-+||||||..+|++
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~-~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RD-LEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhccccccccc----cc-HHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 999999997 6999999875321 1111111 01 1233333 5566677888999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|+|||||.+|-|.--+.|.+.|+++.+ +.|++.|-++..... -+||-|||++|+|+.
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~ 217 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL 217 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE
Confidence 999999999999999999999999875 569999999999876 599999999999997
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=361.00 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=166.1
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCC----------
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTE---------- 405 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~---------- 405 (597)
-|+++|++++|+. ..++|+||||++++||++||||+||||||||+++|+|+++ .+|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 4899999999953 2469999999999999999999999999999999999984 6899999998552
Q ss_pred CCCh---HHHh-cCcEEEeCCC--CCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCC---chhhhCC
Q psy1502 406 DVPL---SKLR-SNISIIPQDP--VLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGL---NMTVYEG 471 (597)
Q Consensus 406 ~~~~---~~lr-~~I~~V~Q~~--~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~Gl---dT~vge~ 471 (597)
+.+. ..+| +.||||+|+| .++. .|++||+.++. ..+..+..+. +.+.++. -|+ +......
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~gL~~~~~~~~~~ 165 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE-----AKRMLDQ-VRIPEAQTILSRY 165 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH-CCCCChhhHHhCC
Confidence 1222 2334 5799999998 5776 59999997531 2222221111 1122222 234 2345566
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCC
Q psy1502 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSG 548 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G 548 (597)
...||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G 245 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCC
Confidence 789999999999999999999999999999999999999999999998753 7899999999999865 9999999999
Q ss_pred eEEE
Q psy1502 549 VAVV 552 (597)
Q Consensus 549 ~Ive 552 (597)
+|++
T Consensus 246 ~i~~ 249 (623)
T PRK10261 246 EAVE 249 (623)
T ss_pred eecc
Confidence 9997
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=358.86 Aligned_cols=190 Identities=21% Similarity=0.299 Sum_probs=159.9
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C--CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-cc
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V--EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GT 429 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~--~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gT 429 (597)
+++|+|+|+++++||++||+||||||||||+++|+|+.+ . +|+|.+||.++.. .++++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 469999999999999999999999999999999999864 3 7999999998742 45678999999999996 59
Q ss_pred HHhhcccCC------CCChHHHHHHHHHhcHHHHHHhc---CCCchhhhCC-CCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 430 LRKNLDPFE------KYPDYVLWTALQEVELKDMIMEG---AGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 430 I~eNI~~~~------~~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~-G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
++||+.+.. ..++++..+. +++.++.+ +..||.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999997531 2333332221 23444442 3458889864 6789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchh-H-hhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHT-I-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlst-i-~~~D~Iivl~~G~Ive 552 (597)
||||+||+.++..+.+.|+++. +++|+|+++|+++. + +.||+|++|++|+++.
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~ 287 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence 9999999999999999999876 48999999999984 4 5699999999999987
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=359.79 Aligned_cols=207 Identities=22% Similarity=0.327 Sum_probs=177.5
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHH---
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL--- 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~l--- 412 (597)
.|+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++...+...+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 3899999999963 2469999999999999999999999999999999999984 78999999999999887654
Q ss_pred -hcCcEEEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 413 -RSNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 413 -r~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|+.++|++|++.+|+ .|+.||+.+.. ..+.++ ....+.++++.+ |++..+......|||||+||++|||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l-gl~~~~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL-GLEDRVEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC-CChhhhcCCcccCCHHHHHHHHHHH
Confidence 578999999999997 59999997521 112111 112233444443 6666677778899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||++..+..||++++|++|++++
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR 223 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998875 4799999999999999999999999999998
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=319.79 Aligned_cols=204 Identities=29% Similarity=0.431 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCC----------CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCCh
Q psy1502 340 KIEFQNTNVRYLSG----------PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~----------~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~ 409 (597)
-++.+||...||-. -.+.++|||+.++||++||||.||||||||-..|+||.+++|+|.++|.|+..++.
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~ 355 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSR 355 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccCh
Confidence 47899999999521 23799999999999999999999999999999999999988999999999999986
Q ss_pred HH---HhcCcEEEeCCCC-CCC--ccHHhhcccC----C-CCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCC
Q psy1502 410 SK---LRSNISIIPQDPV-LFS--GTLRKNLDPF----E-KYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTN 474 (597)
Q Consensus 410 ~~---lr~~I~~V~Q~~~-LF~--gTI~eNI~~~----~-~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~ 474 (597)
.. +|+++-+|+|||| -++ .||.+=|.-| + ..+ ++.+.+|++.+|++.-.. ..-...
T Consensus 356 ~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r---------~RYPhE 426 (534)
T COG4172 356 KEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR---------NRYPHE 426 (534)
T ss_pred hhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh---------hcCCcc
Confidence 65 6899999999998 222 5776666421 1 222 455777887777754332 233578
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
+|||||||||||||++-+|++++|||||||||-.-...|.+-|+++-+ +-+-++|+|+|..++. ||+++||.+|+||
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV 506 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV 506 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe
Confidence 999999999999999999999999999999999999999999887643 6799999999999986 9999999999999
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
|
T Consensus 507 E 507 (534)
T COG4172 507 E 507 (534)
T ss_pred e
Confidence 9
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=351.31 Aligned_cols=207 Identities=23% Similarity=0.313 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCCh-HHHhc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPL-SKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~-~~lr~ 414 (597)
-|+++||+++|+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999952 3569999999999999999999999999999999999974 68999999999875543 34677
Q ss_pred CcEEEeCCC---CCCC-ccHHhhcccCC--CC------ChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHH
Q psy1502 415 NISIIPQDP---VLFS-GTLRKNLDPFE--KY------PDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQ 481 (597)
Q Consensus 415 ~I~~V~Q~~---~LF~-gTI~eNI~~~~--~~------~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQ 481 (597)
.|+||||++ .+|. .|+.||+.++. .. +.++. ...+.++++.+ |++. ........|||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL-KVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc-CccCCCcccccccCCHHHHH
Confidence 899999996 3664 69999997531 11 11111 11223444432 4432 345556799999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||++++|++|+|+.
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998764 47899999999999865 99999999999986
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=286.87 Aligned_cols=206 Identities=23% Similarity=0.256 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCC---CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---H
Q psy1502 340 KIEFQNTNVRYLS---GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---L 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---l 412 (597)
-|++++++..-++ .-.||++|+|.|++||.+|||||||||||||+-++.|+- |++|+|.+.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 3788888887743 236999999999999999999999999999999999997 68899999999999998554 4
Q ss_pred h-cCcEEEeCCCCCCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 413 R-SNISIIPQDPVLFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 413 r-~~I~~V~Q~~~LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
| +++|+|+|...|.. .|-.||...- .+...+....| .++.+. -|+.-.+..-..+||||+.||+|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A------~~lL~~-vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA------KALLEA-VGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHH------HHHHHH-hCcccccccCccccCchHHHHHHHH
Confidence 5 68999999999884 7999998631 12122211111 122222 3666667777889999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||+.-.|+||+-||||-+||.+|...|-+-+..+-. +.|.++|||+.+...+|||++-|.+|+|++
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999998876543 679999999999999999999999999985
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=312.35 Aligned_cols=194 Identities=20% Similarity=0.209 Sum_probs=151.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+.++|++..|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~-- 94 (224)
T cd03220 23 LGILGRKGEVGE-FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG-- 94 (224)
T ss_pred hhhhhhhhhcCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc--
Confidence 667888888854 57999999999999999999999999999999999997 5789999999986421 11111
Q ss_pred eCCCCCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+..+.|++||+.+.. ..+.++..+.+ .+..+. .|++.........||||||||++||||++++|++|
T Consensus 95 ----~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 95 ----FNPELTGRENIYLNGRLLGLSRKEIDEKI-----DEIIEF-SELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred ----CCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH-cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 223579999997531 22222222211 111111 23433344445689999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999988754 589999999999986 599999999999975
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=339.64 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C----CceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V----EGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~----~G~I~idg~di~~~~~~~ 411 (597)
-++++|++..|... .++++||||+|.+||.+||||.|||||||++..|+|+.| . +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 38999999999422 259999999999999999999999999999999999864 2 799999999999998766
Q ss_pred Hh----cCcEEEeCCCC-CCC--ccHHhhcc----cCCCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCC
Q psy1502 412 LR----SNISIIPQDPV-LFS--GTLRKNLD----PFEKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476 (597)
Q Consensus 412 lr----~~I~~V~Q~~~-LF~--gTI~eNI~----~~~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LS 476 (597)
+| +.|+||||+|+ .+| .||.+-|. .....+ .++..+.++.+++.+-.. . ..-...||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~-~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R-DRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h-ccCCcccC
Confidence 53 58999999987 666 47776663 122222 223444444444422111 1 33578999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||+.||+||..||++||+||||.|||+.+.+.|.+.|+++. .+.++|+|||.+..+.. ||||+||++|++||
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999887 47899999999999976 99999999999999
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=350.57 Aligned_cols=205 Identities=26% Similarity=0.390 Sum_probs=163.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEc-----------------
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKID----------------- 400 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~id----------------- 400 (597)
|+++|++++|++ +++|+|+||++++|+++||+||||||||||+++|+|+. |++|+|.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECC-eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 478999999964 57999999999999999999999999999999999984 678999997
Q ss_pred ------ceeCC-------CCC---hHHHhcCcEEEeCC-CCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHH
Q psy1502 401 ------DIDTE-------DVP---LSKLRSNISIIPQD-PVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIM 459 (597)
Q Consensus 401 ------g~di~-------~~~---~~~lr~~I~~V~Q~-~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~ 459 (597)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.+. ...+.++..+ .+.+.++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~ 154 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDLIE 154 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHH
Confidence 33331 111 13467889999998 56776 5999999752 1222222111 1112222
Q ss_pred hcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh
Q psy1502 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM 537 (597)
Q Consensus 460 ~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~ 537 (597)
. -|++.........||||||||++|||||+.+|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.
T Consensus 155 ~-~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 155 M-VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred H-cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 2 2444444556679999999999999999999999999999999999999999999988743 689999999999986
Q ss_pred h-cCEEEEEeCCeEEE
Q psy1502 538 D-SDKVLVMDSGVAVV 552 (597)
Q Consensus 538 ~-~D~Iivl~~G~Ive 552 (597)
. ||+|++|++|+++.
T Consensus 234 ~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 234 DLSDKAIWLENGEIKE 249 (520)
T ss_pred HhcCEEEEEeCCEEee
Confidence 5 99999999999986
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=347.47 Aligned_cols=204 Identities=17% Similarity=0.292 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+++|+++.|. .+|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+. ..+++.|+
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 499999999873 3899999999999999999999999999999999987 578999999999876543 45678899
Q ss_pred EEeCCC---CCCC-ccHHhhcccCCCC------------ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHH
Q psy1502 418 IIPQDP---VLFS-GTLRKNLDPFEKY------------PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQR 480 (597)
Q Consensus 418 ~V~Q~~---~LF~-gTI~eNI~~~~~~------------~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQr 480 (597)
||||++ .+|. -|++||+.++... +..+ ....+.+.++.+ |+. -........||||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL-ALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc-CCCCCCccCccccCChHHH
Confidence 999984 5775 5999999764211 1111 111223333332 443 234455568999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. .++|+|+|||++..+. .||+|++|++|++++
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998864 4789999999999886 599999999999987
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.14 Aligned_cols=204 Identities=17% Similarity=0.265 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeC--------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC----CceEEEcceeCCCC
Q psy1502 340 KIEFQNTNVRYL--------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDIDTEDV 407 (597)
Q Consensus 340 ~I~f~nVsf~Y~--------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~di~~~ 407 (597)
+++|.++. +++ +++++|+|+|+++++||.+||+||||||||||+++|+|..++ +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46677776 552 246799999999999999999999999999999999997642 699999999875
Q ss_pred ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC------CCChHHHHHHHHHhcHHHHHHh--c-CCCchhhhCC--CCCC
Q psy1502 408 PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE------KYPDYVLWTALQEVELKDMIME--G-AGLNMTVYEG--GTNF 475 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~------~~~~e~i~~a~~~a~l~~fI~~--l-~GldT~vge~--G~~L 475 (597)
...+|+.++||+|++.+|+ .|++|||.++. +.+.++ +...+++.++. + +..||.+|+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 3568899999999999996 59999997532 122232 22233455554 3 5689999985 4789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--HhhcCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--IMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i~~~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.. ++|+|+++|+++. ...||++++|++|+++.
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999999999999999999999999999998764 7999999999963 56799999999999998
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=351.79 Aligned_cols=207 Identities=24% Similarity=0.393 Sum_probs=165.7
Q ss_pred cEEEEeeEEEeCC----CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEc-cee---CCCCC--
Q psy1502 340 KIEFQNTNVRYLS----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKID-DID---TEDVP-- 408 (597)
Q Consensus 340 ~I~f~nVsf~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~id-g~d---i~~~~-- 408 (597)
-|+++||+++|++ .+++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999952 246999999999999999999999999999999999987 578999996 643 33332
Q ss_pred -hHHHhcCcEEEeCCCCCCC-ccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCch-----hhhCCCCCCChhH
Q psy1502 409 -LSKLRSNISIIPQDPVLFS-GTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNM-----TVYEGGTNFSVGQ 479 (597)
Q Consensus 409 -~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT-----~vge~G~~LSGGQ 479 (597)
...+|++|+||||++.+|. .|++||+.+.. ....++.. ..+.++++.+ |++. ........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~-~l~~~~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV-GFDEEKAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC-CCCCccchhhhhCChhhCCHHH
Confidence 2345778999999998887 59999997421 11111111 1112333332 3321 3455567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||++..+.. ||+|++|++|++++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988753 6899999999999875 99999999999987
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=309.86 Aligned_cols=174 Identities=28% Similarity=0.388 Sum_probs=150.8
Q ss_pred EEEEeeEEEeCCC--------CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYLSG--------PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~--------~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
++.+|++..|+.. ..+++||||+|++||++||||.||||||||.++|+||+ |++|+|.++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 7899999999532 25899999999999999999999999999999999998 58999999999988766
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
.....+++.+.++.+++.+.. .......|||||||||+|||||.-
T Consensus 82 --------------------------~~~~~~~v~elL~~Vgl~~~~---------~~ryPhelSGGQrQRi~IARALal 126 (268)
T COG4608 82 --------------------------KEERRERVLELLEKVGLPEEF---------LYRYPHELSGGQRQRIGIARALAL 126 (268)
T ss_pred --------------------------hhHHHHHHHHHHHHhCCCHHH---------hhcCCcccCchhhhhHHHHHHHhh
Confidence 222345677777777764322 233457899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|+++++||||||||.-.++.|.+-|.++.+ +-|.++|||+++.+++ ||||.||..|+|||
T Consensus 127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 9999999999999999999999988877643 6899999999999997 99999999999999
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=378.28 Aligned_cols=203 Identities=20% Similarity=0.307 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeC---CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHH
Q psy1502 340 KIEFQNTNVRYL---SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~l 412 (597)
.++++||+++|+ +++++|+|||+++++|+.+||+||||||||||+++|+|+.+ ++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999995 34579999999999999999999999999999999999864 5699999999985 257
Q ss_pred hcCcEEEeCCCC-CCCccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 413 RSNISIIPQDPV-LFSGTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 413 r~~I~~V~Q~~~-LF~gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
|+.+|||+|++. ++..|++||+.+. .+.++++ +.++++..++. +-.|+.+|+.|.+|||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~------~~~d~~v~~~~~~LSgGqrq 908 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME------SYADAVVGVPGEGLNVEQRK 908 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh------hhCCCeeCCCCCCCCHHHhh
Confidence 899999999876 4567999999752 1233333 33444444332 34799999999999999999
Q ss_pred HHHHHHHHccCCC-EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH--hhcCEEEEEeCC-eEEE
Q psy1502 482 LICLARAIVRNNV-ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI--MDSDKVLVMDSG-VAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~-ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti--~~~D~Iivl~~G-~Ive 552 (597)
|++|||||+.+|+ ||+||||||+||+.+...|++.|+++. +++|+|+++|+++.. ..||++++|++| ++++
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 9999999999997 999999999999999999999999874 579999999999974 579999999997 9988
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=311.30 Aligned_cols=175 Identities=26% Similarity=0.373 Sum_probs=145.7
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCC---CCccHHhhcccC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL---FSGTLRKNLDPF 437 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~L---F~gTI~eNI~~~ 437 (597)
|+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++. ..+++++||||++.+ |+.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999987 57899999999864 357789999999976 457999998653
Q ss_pred C---------C--CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC
Q psy1502 438 E---------K--YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506 (597)
Q Consensus 438 ~---------~--~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 506 (597)
. . ..++++.++++..++.+ ........||||||||++||||++++|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTE----------LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCch----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 1 0 11223455555554433 2333455799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 507 PKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 507 ~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+.+...+.+.|.++. +++|+|++||+++.+. .||+|+++ +|++++
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~ 192 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA 192 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 999999999999875 4789999999999886 59999999 799987
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=286.16 Aligned_cols=142 Identities=29% Similarity=0.499 Sum_probs=132.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++++|++++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++ .+|+|.+||. ..++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 478999999965 469999999999999999999999999999999999984 7899999994 579999
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|| |||||+||++||||++++|+++|||
T Consensus 69 ~~-----------------------------------------------------lS~G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 69 EQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred cc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99 9999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
|||++||+.+...+.+.|+++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999987 5799999999999965 89999999996
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=330.23 Aligned_cols=190 Identities=20% Similarity=0.228 Sum_probs=155.9
Q ss_pred cEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.++++|++|+|+++ +++|+|+||+|++|+++||+||+|||||||+++|+|++ |++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 48999999999654 46999999999999999999999999999999999997 5789999999752
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCChHHHH----HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLW----TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~----~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
++++.+.+++ .|++||+.+.. ..+.++.. ++++.+ |++.........||||||||++||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~l----------gL~~~ld~~~~~LSGGQrQRVaLArA 157 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFA----------DIGKFIYQPVKTYSSGMKSRLGFAIS 157 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHc----------CChhHhhCCcccCCHHHHHHHHHHHH
Confidence 2233344443 59999997531 23333332 233333 34334455567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 L~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~ 223 (549)
T PRK13545 158 VHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223 (549)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998864 37899999999999865 99999999999987
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=342.79 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCCh-HHHhc
Q psy1502 340 KIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPL-SKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~-~~lr~ 414 (597)
-|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+.+ .+|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4899999999942 3569999999999999999999999999999999999874 58999999999875443 45688
Q ss_pred CcEEEeCCC---CCCC-ccHHhhcccCC--CCCh-HHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDP---VLFS-GTLRKNLDPFE--KYPD-YVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~---~LF~-gTI~eNI~~~~--~~~~-e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIA 486 (597)
+|+||||++ .+|. .|+++|+.++. .... ..+........+.++++.+ |+.. ........||||||||++||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL-KVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc-CccCCCccCccccCCHHHHHHHHHH
Confidence 999999996 4665 69999997631 1100 0000000111222333332 3321 23344568999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|++|||||||++||+.+...+++.|.++. .+.|+|+|||+++.+.. ||++++|++|+|+.
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988764 37899999999999865 99999999999986
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=344.88 Aligned_cols=199 Identities=21% Similarity=0.316 Sum_probs=163.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++ +..|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 3899999999963467999999999999999999999999999999999987 5789999975 257999
Q ss_pred EeCCCCCCC-ccHHhhcccCC-C-----------------CCh---------HHHHHHHHHhcHHHH---HHh-c--CCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE-K-----------------YPD---------YVLWTALQEVELKDM---IME-G--AGL 464 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~-~-----------------~~~---------e~i~~a~~~a~l~~f---I~~-l--~Gl 464 (597)
|||+|.+|+ .|++||+.++. . ..+ +++.++++.+++++. +.. + .|+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 999999986 59999997531 0 011 235555555554322 111 1 344
Q ss_pred chhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE
Q psy1502 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL 543 (597)
Q Consensus 465 dT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii 543 (597)
+. ......+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||+++.+.. ||+|+
T Consensus 153 ~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 153 PP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 32 34556799999999999999999999999999999999999999999999886 3699999999999976 89999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+++.
T Consensus 230 ~l~~g~i~~ 238 (552)
T TIGR03719 230 ELDRGRGIP 238 (552)
T ss_pred EEECCEEEE
Confidence 999999874
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=326.81 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~~ 418 (597)
++++|++.+|++ .++|+||||++.+||..|++|.+|||||||+|+|.|.| |++|+|.+||.+..-.++.+ ...-|+.
T Consensus 9 l~~~~i~K~Fgg-V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 9 LELRGISKSFGG-VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eeeecceEEcCC-ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 789999999974 56999999999999999999999999999999999998 57899999999999777555 5567999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC-------CChHHHHHHHHHhcHHHHHHhc---CCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK-------YPDYVLWTALQEVELKDMIMEG---AGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~-------~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|.||..|++ -||.|||-+++. .+..++.+.++ +.+..+ ...++.| .+||+||||-++|||
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~~~~~v----~~LsiaqrQ~VeIAr 158 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDIDPDTLV----GDLSIAQRQMVEIAR 158 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCChhhhh----hhCCHHHHHHHHHHH
Confidence 999999996 599999976543 23344444433 223332 1245555 479999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+..+++|||||||||+|+....+.+.+.++++. ++.++|+|||||..+.. ||||.||.||+.+.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999998888999998886 58999999999999965 99999999999988
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=306.81 Aligned_cols=187 Identities=27% Similarity=0.349 Sum_probs=163.1
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh----cCcEEEeCCCCCCC-cc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR----SNISIIPQDPVLFS-GT 429 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr----~~I~~V~Q~~~LF~-gT 429 (597)
-++|+||+|+.||+..|.|-||||||||+.++.||+ |+.|+|++||.|+..++...|| +++++|+|+.-||+ .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 378999999999999999999999999999999998 5789999999999999977764 58999999999996 79
Q ss_pred HHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 430 LRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 430 I~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
|.||..||- ..+.+ ...++++.+++++|-.. ....||||++||+.|||||..||+||++|||+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~----------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK----------YPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc----------CcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 999999873 33433 35666666666665432 34689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||--....|+.|.++-+ .||+++|||+|.... -.|||..|+||+|+.
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 99999999999999876643 689999999999874 589999999999998
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=309.91 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=149.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~ 431 (597)
+++|+|+||+|++|+.+||+||+|||||||+++|+|+++ .+|+|.+||. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 468999999999999999999999999999999999974 7899999984 467888887764 6999
Q ss_pred hhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 432 KNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
+|+.+. ...+.++..+.+. +.+ ...|++..+......||||||||++||||++++|+||||||||++||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~-----~~l-~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTP-----KII-EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH-----HHH-HHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 999752 1334444433221 111 1134555566677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 509 TDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 509 te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+...+.+.|.++. .++|+|++||++..+.. ||+|++|++|+|++
T Consensus 178 ~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 178 FAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 9999999998764 47899999999999865 99999999999987
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=314.29 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=157.0
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEE-----------EcceeCCCCChHH
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIK-----------IDDIDTEDVPLSK 411 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~-----------idg~di~~~~~~~ 411 (597)
.||+++|+...++|+|+|+ +++|+++||+||||||||||+++|+|++ |++|+|. +||+++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 5789999755579999995 9999999999999999999999999998 5789996 8899987764443
Q ss_pred Hhc--CcEEEeCCCCCCCccHHhhcccC-CCCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 412 LRS--NISIIPQDPVLFSGTLRKNLDPF-EKYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 412 lr~--~I~~V~Q~~~LF~gTI~eNI~~~-~~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
.+. .+++++|++.+++.++.+|+... .... ++++.++++. .|++..+......||||||||++|||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~----------~gl~~~~~~~~~~LS~G~~qrv~lar 152 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQ----------LELRHVLDRNIDQLSGGELQRVAIAA 152 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHH----------cCCchhhcCChhhCCHHHHHHHHHHH
Confidence 433 47888888777765555554321 1111 2223333333 25555566777899999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++++|+++|||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+ |++++
T Consensus 153 al~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 153 ALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 99999999999999999999999999999988754 6899999999999985 99999995 55654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=298.92 Aligned_cols=208 Identities=24% Similarity=0.381 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~~ 418 (597)
++.+|++.+|. +-.+++||||++++||.+||+||+||||||++|+|.|+| |++|+|.++|.||...+++.. |.-|+-
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 57899999995 456999999999999999999999999999999999999 578999999999999997775 456999
Q ss_pred EeCCCCCCC-ccHHhhcccCCC------------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFEK------------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~~------------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
-+|.+-+|. .|+.||+..+.. ....+-.++.++|. +.++. -|++-.-.+...+||+||+.|+-|
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~--~~Le~-vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--ELLEF-VGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHH--HHHHH-cCCchhhcchhhcCChhHhHHHHH
Confidence 999999997 599999864311 11011122222221 22221 467777778888999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||..+|++|+||||.++|.++....+.+.|+++.+ +.|+++|-|+++.+.+ ||||+||+.|+++.
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 9999999999999999999999999999999999875 4899999999999986 99999999999876
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=341.15 Aligned_cols=201 Identities=19% Similarity=0.307 Sum_probs=165.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+++|+++ ++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+. +.+|++|+
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 489999984 3799999999999999999999999999999999987 578999999999987664 34678899
Q ss_pred EEeCCC---CCC-CccHHhhcccCCC---------CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDP---VLF-SGTLRKNLDPFEK---------YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~---~LF-~gTI~eNI~~~~~---------~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRI 483 (597)
||||++ .+| +.|++||+.++.. .+.++. ...+.++++.+ |+. .........||||||||+
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF-NIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc-CCCCCCccCchhhCCHHHHHHH
Confidence 999997 355 4799999975310 111111 11223444332 442 235566778999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+.
T Consensus 405 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred HHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999875 37899999999999865 99999999999986
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=310.31 Aligned_cols=182 Identities=23% Similarity=0.360 Sum_probs=150.4
Q ss_pred EEeCCCCccceeeeEEEc-----CCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 348 VRYLSGPRVIKNLNITIH-----PKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 348 f~Y~~~~~vL~~isl~I~-----~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+|++....|+|++|+++ +|++++|+||||||||||+++|+|++ |++|+|.++|. .|+|+||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 678766668899999997 68999999999999999999999987 57899999984 6999999
Q ss_pred CCC-CCCccHHhhcccCC-CC-C-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 422 DPV-LFSGTLRKNLDPFE-KY-P-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 422 ~~~-LF~gTI~eNI~~~~-~~-~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
++. .++.|++||+.... .. . .+...++++. .|++.........||||||||++|||||+++|+++|
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~----------l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~lll 138 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP----------LQIEQILDREVPELSGGELQRVAIAACLSKDADIYL 138 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH----------cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 987 46899999996431 11 1 1122233333 344444556667899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
|||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|+++..+
T Consensus 139 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 139 LDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCee
Confidence 9999999999999999999998753 7899999999999985 9999999876544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=341.57 Aligned_cols=196 Identities=19% Similarity=0.279 Sum_probs=156.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|. ..|+||
T Consensus 2 l~i~~ls~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFGA-KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeCC-cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 789999999964 57999999999999999999999999999999999987 57899999872 469999
Q ss_pred eCCCCCCC-ccHHhhcccCCC-----------------CChHH---HHHHH----------HHhcHHHHHHhcCCCchhh
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK-----------------YPDYV---LWTAL----------QEVELKDMIMEGAGLNMTV 468 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~-----------------~~~e~---i~~a~----------~~a~l~~fI~~l~GldT~v 468 (597)
+|++.+|. .|++||+.++.. ...+. +.+.. ....+.+.++. -|++...
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~ 148 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLG-VGIPEEQ 148 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHh-CCCChhH
Confidence 99998886 499999875310 00000 00000 01112222222 3554333
Q ss_pred -hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe
Q psy1502 469 -YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD 546 (597)
Q Consensus 469 -ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~ 546 (597)
.....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||+++.+.. ||+|++|+
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 234679999999999999999999999999999999999999999999975 37899999999999865 99999999
Q ss_pred CCeEE
Q psy1502 547 SGVAV 551 (597)
Q Consensus 547 ~G~Iv 551 (597)
+|+++
T Consensus 227 ~g~i~ 231 (530)
T PRK15064 227 YGELR 231 (530)
T ss_pred CCEEE
Confidence 99995
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.80 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=159.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++ +.+|||
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 4899999999963467999999999999999999999999999999999987 5789999975 247999
Q ss_pred EeCCCCCCCc-cHHhhcccCC-C----------------CCh----------HHHHHHHHHhcH---HHHHHh-c--CCC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE-K----------------YPD----------YVLWTALQEVEL---KDMIME-G--AGL 464 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~-~----------------~~~----------e~i~~a~~~a~l---~~fI~~-l--~Gl 464 (597)
|||+|.+|+. |++||+.++. . ..+ .++.++++.++. .+-+.. + .|+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 9999999975 9999997531 0 000 112222222211 111111 1 344
Q ss_pred chhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE
Q psy1502 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL 543 (597)
Q Consensus 465 dT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii 543 (597)
+ ........||||||||++|||||+.+|++||||||||+||+++...+.+.|+++ +.|+|+|||+++.+.. ||+|+
T Consensus 155 ~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 155 P-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred C-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 3 234556789999999999999999999999999999999999999999999887 3599999999999976 89999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+++.
T Consensus 232 ~l~~g~i~~ 240 (556)
T PRK11819 232 ELDRGRGIP 240 (556)
T ss_pred EEeCCEEEE
Confidence 999999874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=341.74 Aligned_cols=202 Identities=21% Similarity=0.297 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCC-CChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTED-VPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~-~~~~~lr~~I 416 (597)
-|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+.+ ++|+|.++|.++.. .+...+|++|
T Consensus 260 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 260 RIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred eEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 4999999999964 469999999999999999999999999999999999876 38999999987643 2334567899
Q ss_pred EEEeCCCCCCC---ccHHhhcccC--C------CCCh---HHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHH
Q psy1502 417 SIIPQDPVLFS---GTLRKNLDPF--E------KYPD---YVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQ 481 (597)
Q Consensus 417 ~~V~Q~~~LF~---gTI~eNI~~~--~------~~~~---e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQ 481 (597)
+||+|++.++. .|+++++.++ . .... +++.++++.. |++. ........|||||||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL----------GIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc----------CCchhhccCchhhCCHHHHH
Confidence 99999987642 4677776421 1 0111 1222222222 4443 344556789999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-D-CTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
|++|||||+.+|++|||||||++||+++...+.+.|.++.+ + .|+|+|||+++.+.. ||++++|++|+|++
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 99999999999999999999999999999999999998754 3 469999999999974 79999999999987
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=369.19 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++||++.|+ +++++|+|+||++++||.+||+||||||||||+++|+|+. |++|+|.++|.|+.. +...+|+++|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999995 3567999999999999999999999999999999999987 678999999999975 5667889999
Q ss_pred EEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|+||++.+|+ .|++|||.+.. ..+.++..+ .+.+.++. -|++........+||||||||++|||||+.+|
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~-vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLED-TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH-cCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999997 59999997631 223222211 11222222 24555556677899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|+++.
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998788999999999999975 99999999999987
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=289.48 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~ 417 (597)
.+..+|+..+|. .++|.+|+||++++||.||+.||+|+||||.+..+.||. |++|.|.+||.|++.++.... |--||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 478899999995 457999999999999999999999999999999999997 689999999999999997664 45699
Q ss_pred EEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
|+||+|.+|.+ |++|||...-+..+.....+-++..+++.+++ .++...-...|..||||||.|+-|||||..||+.+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~e-f~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEE-FHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH-hchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 99999999975 99999964222222112222233233333332 14455556778999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCc-hhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRL-HTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl-sti~~~D~Iivl~~G~Ive 552 (597)
+||||++++||.+-..|++-+..+.. +--+++.-|.. +|+.-|||.|++.+|+|..
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla 219 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA 219 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe
Confidence 99999999999999999999988764 55677777885 5677899999999999987
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=337.58 Aligned_cols=200 Identities=18% Similarity=0.271 Sum_probs=164.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++| ++.++|
T Consensus 319 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGY 386 (530)
T ss_pred eEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEE
Confidence 5999999999964 56999999999999999999999999999999999987 5789999987 357999
Q ss_pred EeCCCC--CCC-ccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPV--LFS-GTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~--LF~-gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
|||++. +++ .|+++|+.... ...++++.++++..++. ..........||||||||++||||++.+|
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~~LSgGq~qrv~la~al~~~p 457 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS---------QDDIKKSVKVLSGGEKGRMLFGKLMMQKP 457 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC---------hhHhcCcccccCHHHHHHHHHHHHHhcCC
Confidence 999974 443 69999986421 22234455555444431 12344556799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCchhHhhHh
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g~y~~l~~ 563 (597)
+||||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|++++. .|.+.+..+
T Consensus 458 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~-~g~~~~~~~ 525 (530)
T PRK15064 458 NVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDF-SGTYEEYLR 525 (530)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEc-CCCHHHHHH
Confidence 999999999999999999999999987 4599999999999875 999999999999841 344544443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=338.00 Aligned_cols=202 Identities=18% Similarity=0.288 Sum_probs=163.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~~I~ 417 (597)
.++++|+++. .+++|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++...+ .+.+++.|+
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 4899999852 4899999999999999999999999999999999987 47899999999987543 345678999
Q ss_pred EEeCCCC---CC-CccHHhhcccCCC-C--------ChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDPV---LF-SGTLRKNLDPFEK-Y--------PDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~~---LF-~gTI~eNI~~~~~-~--------~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRI 483 (597)
|+||++. +| +.|+.||+.++.. . ...+- ...+.+++.. -|++ .........||||||||+
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~-~~l~~~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRS-LNIKTPSREQLIMNLSGGNQQKA 405 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHh-cCcccCCccCccccCCHHHHHHH
Confidence 9999973 55 4799999976321 0 11111 1112233333 2442 234455679999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||++.+|++|||||||++||+.+...+.+.|.++.+ +.|+|+|||+++.+.. ||++++|++|+++.
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988754 7899999999999964 99999999999987
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=284.12 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+.+|+|++-. ++.+|+++||+++|||.+||+||+|+|||||++.|+|- -|.+|++.++|+++.+.+.+.+-++-++.
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 78899999884 46699999999999999999999999999999999994 57899999999999999999999999999
Q ss_pred eCCCCC-CCccHHhhcccCC-------CCChHH--HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 420 PQDPVL-FSGTLRKNLDPFE-------KYPDYV--LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~-------~~~~e~--i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
||+..| |.-|++|=+.+|. +..+++ ..+|+..+++..|- +..-..|||||+||+.+||.|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la----------~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA----------GRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh----------ccchhhcCchHHHHHHHHHHH
Confidence 999885 8999999997652 222333 56677777765553 223358999999999999999
Q ss_pred cc------CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 490 VR------NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~------~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.. ++++|+|||||||||......+++..+++.. +..|++|=|+|+... .||||++|.+||++.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee
Confidence 65 3459999999999999999999999988764 689999999999885 699999999999998
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=278.94 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=170.0
Q ss_pred EEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
+..++++.+|++. ..+|+|+|++|.+||.+.++||||||||||+|+++||. |..|+|.+||.+|..-. ..=|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----cccee
Confidence 5678999999643 34999999999999999999999999999999999997 56799999999987654 34689
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHh--cCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIME--GAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~--l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+|++-|+. -|+.||+.|+- .++..+ +..-.+++... +++++ -..-..||||||||+.|||||.-+
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~-----R~~~a~q~l~~VgL~~~~---~~~i~qLSGGmrQRvGiARALa~e 150 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQ-----RREIAHQMLALVGLEGAE---HKYIWQLSGGMRQRVGIARALAVE 150 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHhCccccc---ccceEeecchHHHHHHHHHHhhcC
Confidence 999999999 59999999862 344332 12222233322 23333 233468999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeC--CeEEEecCchhHhhHhhhcc
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDS--GVAVVSSFGFFFSKDLIEGT 567 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~--G~Ive~~~g~y~~l~~~~~~ 567 (597)
|+.|+||||++|||+-|...+|+.|-++.+ ++-+++|||.++..- -+++++||+- |+|++.-.--|.+-|....+
T Consensus 151 P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~aage~ 230 (259)
T COG4525 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEP 230 (259)
T ss_pred cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHhhcCCC
Confidence 999999999999999999999999987664 789999999998876 5999999976 79999332225555543333
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=331.34 Aligned_cols=204 Identities=17% Similarity=0.293 Sum_probs=164.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH-HHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS-KLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~-~lr~~I~ 417 (597)
.|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+. |++|+|.+||.++...+.. .+++.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 48999999985 35999999999999999999999999999999999987 5789999999999876654 3577899
Q ss_pred EEeCCCC---CCC-ccHHhhccc-----C-C--C-CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHH
Q psy1502 418 IIPQDPV---LFS-GTLRKNLDP-----F-E--K-YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 418 ~V~Q~~~---LF~-gTI~eNI~~-----~-~--~-~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRI 483 (597)
|+||++. +|. .|+.+|+.. . . . .+..+..+ ...++++.+ |+. -........||||||||+
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM-RVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc-CccCCCcccccccCCcHHHHHH
Confidence 9999963 565 577777422 1 1 1 11111111 122344443 332 124556679999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||++++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||++++|++|+++.
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998764 4789999999999986 499999999999986
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=280.72 Aligned_cols=154 Identities=35% Similarity=0.547 Sum_probs=143.7
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+++|++|+|++ +++|+++||+|++|+.++|+|++|||||||+++|.|+++ .+|+|.+||.++.+.....++++++|++
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 37899999965 469999999999999999999999999999999999885 6899999999998887788889999999
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
| |||||+||++||||++.+|+++||||
T Consensus 80 q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 80 Q-----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred e-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
||++||.++...+.+.|.+..+ ++|++++||+++.+.+ ||++++|++|+
T Consensus 107 p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999988755 4899999999999998 59999999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=271.44 Aligned_cols=202 Identities=25% Similarity=0.363 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce--eCCCCC----hHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI--DTEDVP----LSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~--di~~~~----~~~l 412 (597)
+|+++|++|.|+. ..+|.||+|+-+.|+++.+.||||+|||||++.|.=+. |.+|+..|-|. |.+... ...+
T Consensus 2 sirv~~in~~yg~-~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccccc-chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 4899999999964 45999999999999999999999999999999998775 78999999765 555443 3468
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcc--cC--CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLD--PF--EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~--~~--~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
|+.+|+|+|+-.|.. -|+-||+. +- ...++++ -.+.+++..+.+|.. .-...|||||.||+
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~ad----------r~plhlsggqqqrv 150 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYAD----------RYPLHLSGGQQQRV 150 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccc----------cCceecccchhhhH
Confidence 999999999999996 69999984 21 1334443 233344444444422 23468999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||.-+|++|++||||+||||+-.+.|.+-|+++.. |.|-++|||.....+. |.+++.||+|+|||
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive 221 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe
Confidence 999999999999999999999999999999999988865 7899999999999976 89999999999999
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=311.60 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH-HHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS-KLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~-~lr~~I~ 417 (597)
-++++|++..|| +-.+++||||+|++||.-||.|.+|+|||||++.|.|+| |++|+|.+||+.++--++. ..|.-||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 389999999998 566899999999999999999999999999999999999 6899999999999877654 5778899
Q ss_pred EEeCCCCCCCc-cHHhhcccCCCCCh---HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFEKYPD---YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~~~~~---e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
+|.|++.|++. |+.|||.++.+.+. -...++.++ +.+..+. -|++-...+.-..||-||+||+-|-+|||++|
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~--i~~l~~~-yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR--IKELSER-YGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHH--HHHHHHH-hCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 99999999975 99999988643210 011122111 1222222 35555556666789999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||||-|-|..-..+.+.++++.+ |+|+|+|||+|..++. |||+-||.+|+++.
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999999999988764 8999999999999986 99999999999988
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=331.61 Aligned_cols=201 Identities=21% Similarity=0.321 Sum_probs=164.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH-HhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK-LRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~-lr~~I~ 417 (597)
-|+++|++. .+|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.++|.++...+... +++.|+
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 489999984 2699999999999999999999999999999999987 57899999999998776554 467899
Q ss_pred EEeCCC---CCCC-ccHHhhcccC--C--C--CChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHH
Q psy1502 418 IIPQDP---VLFS-GTLRKNLDPF--E--K--YPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 418 ~V~Q~~---~LF~-gTI~eNI~~~--~--~--~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIA 486 (597)
||||++ .+|. .|+.+|+... . . ....+. ...+.++++.+ |++ .........||||||||++||
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL-NIKFNHAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc-CCCCCCccCccccCCcHHHHHHHHH
Confidence 999986 3665 5999998531 0 1 011111 11223444432 454 345566678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||++++|++|+|+.
T Consensus 416 ~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 416 KCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 7899999999999975 99999999999986
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=360.76 Aligned_cols=203 Identities=19% Similarity=0.281 Sum_probs=172.9
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
..|+++|++++|++ .+++|+|+||+|++||++||+||+|||||||+++|+|+. |++|+|.++|.++.. +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 35999999999965 357999999999999999999999999999999999987 688999999999965 455678899
Q ss_pred EEEeCCCCCCC-ccHHhhcccC---CCCChHHH----HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPF---EKYPDYVL----WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i----~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+||++.+++ -|++||+.+. ...+.+++ .++++.. |++.........||||||||++||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~l----------gL~~~~dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL----------GLSLYADRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999986 5999999752 12333332 2233333 34444455567899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|+||+|||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||||++|++|+++.
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998864 47999999999999975 99999999999987
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=315.04 Aligned_cols=169 Identities=28% Similarity=0.350 Sum_probs=142.3
Q ss_pred EEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC---CCChHH--
Q psy1502 372 IVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYV-- 444 (597)
Q Consensus 372 IVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~-- 444 (597)
|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++|+||+|++.+|. .|++||+.++. ..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999998 478999999999987664 4688999999999997 49999998642 223222
Q ss_pred --HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC
Q psy1502 445 --LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522 (597)
Q Consensus 445 --i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~ 522 (597)
+.++++.. |++.........||||||||++|||||+++|++||||||||+||+.+...+.+.|.++.+
T Consensus 79 ~~~~~~l~~~----------~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 79 PRVLEALRLV----------QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHc----------CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 23333333 444445556678999999999999999999999999999999999999999999988754
Q ss_pred --CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 523 --DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 523 --~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 6899999999998765 99999999999987
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=275.16 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-----------
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----------- 407 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----------- 407 (597)
.++.+|+..+|.. ..||++|||+.++|+.|.|+|.|||||||++++|.=|. |..|.|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~-~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhccc-chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 4889999999954 46999999999999999999999999999999998775 7789999999987533
Q ss_pred --ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCC----CCChH-HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH
Q psy1502 408 --PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFE----KYPDY-VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ 479 (597)
Q Consensus 408 --~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~----~~~~e-~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ 479 (597)
..+.+|.+.++|+|+.-|.+ .|+.||..-.+ ..+.. .+.+|- .+... -|++..-..-...|||||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae------~~L~k-VGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE------KYLAK-VGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHH------HHHHH-hCchhhhhcCccccCchH
Confidence 24568899999999999996 79999984211 22322 222221 12221 233333334467899999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.||.||||||.-+|+++++|||||||||+---+|.+.++++.. ++|.++|||-+...++ +.+++.|.+|.|.|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 9999999999999999999999999999999999999988764 8999999999999998 69999999999977
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=296.74 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=141.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEE-EcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHh
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIK-IDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRK 432 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~-idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~e 432 (597)
+|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|. ++|.++ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 799999999999999999999999999999999987 5789997 777543 13467788875 9999
Q ss_pred hcccC---CCCChHHHHHHH-HHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 433 NLDPF---EKYPDYVLWTAL-QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 433 NI~~~---~~~~~e~i~~a~-~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
|+.+. ...+.++..+.+ +..++. +.+++.+ ..||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLE------QCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChh------HHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99753 133444433222 111111 2334444 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 509 te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+...+.+.|.+..+++|+|++||+++.+. .||++++|++|++++
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~ 183 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM 183 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE
Confidence 99999998876667789999999999996 599999999999987
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=329.99 Aligned_cols=216 Identities=20% Similarity=0.226 Sum_probs=166.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++ + ..|||
T Consensus 324 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAY 391 (556)
T ss_pred EEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEE
Confidence 5999999999964 46999999999999999999999999999999999987 5789999954 2 16999
Q ss_pred EeCCC-CCCC-ccHHhhcccCCC---CC--hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDP-VLFS-GTLRKNLDPFEK---YP--DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~-~LF~-gTI~eNI~~~~~---~~--~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||++ .++. .|++||+.++.. .. +.+..++++ . -|+.. ........||||||||++||||++
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~---------~-~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVG---------R-FNFKGGDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHH---------h-CCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 99997 5664 599999976321 11 122222222 2 23422 234456789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-CeEEEecCchhHhhHhhhccc
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDS-GVAVVSSFGFFFSKDLIEGTV 568 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~-G~Ive~~~g~y~~l~~~~~~~ 568 (597)
.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++ |++.+- .|.|.+..++ .++
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~-~g~~~~~~~~-~~~ 537 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWF-EGNFQEYEED-KKR 537 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEe-cCCHHHHHHH-HHH
Confidence 999999999999999999999999999987 3 499999999998875 999999996 787752 4556554333 333
Q ss_pred chHHHHHHHhHhH
Q psy1502 569 SAKVLSSRKRREK 581 (597)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (597)
......+++++++
T Consensus 538 ~~~~~~~~~~~~~ 550 (556)
T PRK11819 538 RLGADAARPHRIK 550 (556)
T ss_pred HHHHHHhhHHHHh
Confidence 3333444444443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=281.37 Aligned_cols=144 Identities=27% Similarity=0.321 Sum_probs=130.3
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
.||+++|++ .++++++ |++++|++++|+||||||||||+++|+|++ |++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~~-~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYGV-FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEECC-EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 688999964 5689884 999999999999999999999999999987 578999999963 7899987
Q ss_pred CCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 423 PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
+. ||||||||++||||++.+|+++||||||
T Consensus 70 ~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 70 ID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 53 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
++||+++...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|+++-.+
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999988753 3899999999999984 9999999988655
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=355.45 Aligned_cols=204 Identities=22% Similarity=0.305 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeC------------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeC
Q psy1502 340 KIEFQNTNVRYL------------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDT 404 (597)
Q Consensus 340 ~I~f~nVsf~Y~------------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di 404 (597)
.+.|+||+|..+ ++..+|+|||++++||+.+||+||||||||||+++|+|..+ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 689999999983 12369999999999999999999999999999999999864 479999999886
Q ss_pred CCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCC-
Q psy1502 405 EDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGG- 472 (597)
Q Consensus 405 ~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G- 472 (597)
. ...+++.+|||+|++.++. .|++|||.+. .+.++++ +.++++..++.+ -.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~------~~~~~vg~~~~ 1017 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN------LKDAIVGLPGV 1017 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh------HhCCccCCCCC
Confidence 4 3456788999999988876 5999999752 1233332 344454444433 2477888655
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--HhhcCEEEEEeC-C
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--IMDSDKVLVMDS-G 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i~~~D~Iivl~~-G 548 (597)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++. ...||++++|++ |
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999998754 7899999999984 467999999996 8
Q ss_pred eEEE
Q psy1502 549 VAVV 552 (597)
Q Consensus 549 ~Ive 552 (597)
+++.
T Consensus 1098 ~~v~ 1101 (1470)
T PLN03140 1098 QVIY 1101 (1470)
T ss_pred EEEE
Confidence 9886
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=288.57 Aligned_cols=184 Identities=24% Similarity=0.313 Sum_probs=159.1
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC----ChHHHhcCcEEEeCCCCCCC-ccHHh
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV----PLSKLRSNISIIPQDPVLFS-GTLRK 432 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~----~~~~lr~~I~~V~Q~~~LF~-gTI~e 432 (597)
++||+.+....+||-|+||||||||+|+|.|+. |++|.|.+||.-+.+- ...--+++||||+||.-||. -|++.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 689999988999999999999999999999987 7899999999977554 34456889999999999996 79999
Q ss_pred hcccCCCCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 433 NLDPFEKYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 433 NI~~~~~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
|++|+...+ .++..+++ .+-|+...+.....+||||+|||+||+|||+.+|++|+||||.|+||-...+
T Consensus 96 NL~YG~~~~~~~~fd~iv----------~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLV----------ALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred chhhhhcccchHhHHHHH----------HHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 999986544 33333332 3346666777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--cEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 512 LIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 512 ~I~~~l~~~~~~--~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+++--|+++.++ --++.|||.+..+.+ ||++++|++|++..
T Consensus 166 EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 166 EILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 999999888763 579999999999865 99999999999987
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=278.08 Aligned_cols=200 Identities=27% Similarity=0.364 Sum_probs=168.0
Q ss_pred CCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCC--CC-
Q psy1502 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LF- 426 (597)
Q Consensus 351 ~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~--LF- 426 (597)
+..+++|+++||+|++|++|-|+|.+|||||||++.|.|- .|++|+|.|||+|+...+.+.--..++-|+|||. .|
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 3456899999999999999999999999999999999995 5789999999999999999988889999999997 44
Q ss_pred CccHHhhcccCC------CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 427 SGTLRKNLDPFE------KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 427 ~gTI~eNI~~~~------~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
+-||.||+.... ..+.. ...-++....+-+..+ .|++-.++.+-.-|||||||-++++-|.++.|+||+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 369999996421 11211 1111223333445666 89999999998899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhc-CEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDS-DKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~-D~Iivl~~G~Ive 552 (597)
|-|+||||.+...|++.=.+..+ +-|++||||.+.-.-++ +|.++|++|+||-
T Consensus 174 EHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred chhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 99999999999999877555432 56999999999988764 9999999999987
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.80 Aligned_cols=196 Identities=19% Similarity=0.239 Sum_probs=158.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++ + ..|+|
T Consensus 322 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAY 389 (552)
T ss_pred EEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEE
Confidence 4999999999964 56999999999999999999999999999999999986 5789999954 2 16999
Q ss_pred EeCCCC-CCC-ccHHhhcccCCC---CC--hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPV-LFS-GTLRKNLDPFEK---YP--DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~-LF~-gTI~eNI~~~~~---~~--~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll 490 (597)
|||++. ++. .|++||+.++.. .. +.+.. +.+.. -|++. ........||||||||++|||||+
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGR-FNFKGSDQQKKVGQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHh-CCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999973 564 599999976421 11 11122 22222 24432 234556789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-CeEEEecCchhHh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDS-GVAVVSSFGFFFS 560 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~-G~Ive~~~g~y~~ 560 (597)
.+|++|||||||++||+.+...+.+.|.++. .|+|+|||++..+.. ||+|++|++ |+++.- .|.|.+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~-~g~~~~ 528 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWF-EGNYSE 528 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEe-CCCHHH
Confidence 9999999999999999999999999999873 499999999999875 999999997 587652 344543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=331.60 Aligned_cols=190 Identities=24% Similarity=0.320 Sum_probs=156.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++ +.+|+|
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAV 576 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEE
Confidence 5999999999965567999999999999999999999999999999999987 5789999875 347999
Q ss_pred EeCCCCCCCccHHhhccc-----CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVLFSGTLRKNLDP-----FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~-----~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|++. ...++.+|... ....+++++.++++..++.+ .........||||||||++||||++.+|
T Consensus 577 v~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~---------~~~~~~~~~LSgGqkqRvaLAraL~~~p 646 (718)
T PLN03073 577 FSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG---------NLALQPMYTLSGGQKSRVAFAKITFKKP 646 (718)
T ss_pred Eecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh---------HHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 999863 23355555321 12334555665555555421 1233456799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+.. ||++++|++|++++
T Consensus 647 ~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~ 704 (718)
T PLN03073 647 HILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTP 704 (718)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999875 3 499999999999975 99999999999984
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=275.43 Aligned_cols=156 Identities=21% Similarity=0.320 Sum_probs=130.5
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
..++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ..+ .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 356899999999999999999999999999999985 368999998763 222 2456888887
Q ss_pred hcccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHccC--CCEEEeecCCCCCCHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRN--NVILVLDEATANVDPKT 509 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~~--p~ILILDEaTSaLD~~t 509 (597)
.++ ++.+ |+.. ........||||||||++||||++++ |+++||||||++||+++
T Consensus 68 -------------~~~---------l~~~-~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQF---------LIDV-GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHH---------HHHc-CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 122 2222 3332 25667889999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 510 DLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 510 e~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+.
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 999999998875 47999999999999999999999977643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=327.36 Aligned_cols=189 Identities=20% Similarity=0.289 Sum_probs=154.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+ |.++ .|||
T Consensus 319 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 4899999999964 56999999999999999999999999999999999987 57899998 4332 5999
Q ss_pred EeCCC-CCCC-ccHHhhcccCC-CC--C--hHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDP-VLFS-GTLRKNLDPFE-KY--P--DYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~-~LF~-gTI~eNI~~~~-~~--~--~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll 490 (597)
++|++ .++. .|+.||+.++. .. + ..++. +.+.. .|+.. ........||||||||++||||++
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVL---------GYLQD-FLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHH---------HHHHh-cCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 99986 4665 59999997532 11 1 11222 22222 13321 233445689999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe-CCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD-SGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~-~G~Ive 552 (597)
.+|++|||||||++||+.+...+.+.|++. +.|+|+|||++..+.. ||+|++|+ +|+|.+
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 999999999999999999999999999886 4699999999999865 99999998 899987
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.52 Aligned_cols=189 Identities=21% Similarity=0.324 Sum_probs=154.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+. |++|+|.+++. .+|||
T Consensus 312 ~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 4899999999964 56999999999999999999999999999999999987 57899999741 26999
Q ss_pred EeCCC--CCCC-ccHHhhccc-CCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDP--VLFS-GTLRKNLDP-FEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~--~LF~-gTI~eNI~~-~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
++|++ .++. .|+.+++.. .....++++.++++.. |+.. .+......||||||||++||||++++|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF----------GFQGDKVTEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc----------CCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99985 3443 478888642 1122233333333333 3321 234455689999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++|||||||++||+.+...+.+.|.++ + .|+|+|||++..+.. ||+|++|++|+|+.
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~ 507 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEP 507 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999987 3 599999999999975 99999999999985
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=320.98 Aligned_cols=198 Identities=20% Similarity=0.270 Sum_probs=153.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 789999999964 56999999999999999999999999999999999987 578999998842 48999
Q ss_pred eCCCCCCCccHHhhcccCC----CCCh-----------HHHHHHHHH------hcHHHHHHh-c--CCCc-hhhhCCCCC
Q psy1502 420 PQDPVLFSGTLRKNLDPFE----KYPD-----------YVLWTALQE------VELKDMIME-G--AGLN-MTVYEGGTN 474 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~----~~~~-----------e~i~~a~~~------a~l~~fI~~-l--~Gld-T~vge~G~~ 474 (597)
+|++..+..|..+++.-.. ..+. ..+...... ....+-+.. + -|+. ......-..
T Consensus 70 ~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred ecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 9977666667666553110 0000 000000000 001111222 1 3443 234445678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 475 FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 475 LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++.
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999886 5799999999999975 99999999999976
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=319.17 Aligned_cols=187 Identities=22% Similarity=0.319 Sum_probs=155.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-++++|++++|++ ..|+++||+|++||.+||+||||||||||+++|+|+. |++|+|.++ ..|+|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEE
Confidence 4899999999964 3599999999999999999999999999999999987 578999986 15999
Q ss_pred EeCCCCC-CCccHHhhcccCC-CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPVL-FSGTLRKNLDPFE-KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~~-~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||++.+ ++.|++||+.++. ... ...+.++++.. |++......-..||||||||++|||||+++|++
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l----------~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL----------QLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC----------CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 4679999997642 222 22233333333 344344555678999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||++++|++ ++..
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 999999999999999999999998754 6899999999999865 999999976 6554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=288.84 Aligned_cols=205 Identities=25% Similarity=0.330 Sum_probs=170.1
Q ss_pred EEEEeeEEEeC---CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc------CCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTNVRYL---SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVsf~Y~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~------~~G~I~idg~di~~~~~~~ 411 (597)
++++|++..|. +...+++||||+|.+||++|+||.||||||--+..++|+.| ++|+|.++|.|+-..+...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 78999988883 23569999999999999999999999999999999999853 3799999999999999888
Q ss_pred Hhc----CcEEEeCCCCCC-C--ccHHhhc----ccCCC----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCC
Q psy1502 412 LRS----NISIIPQDPVLF-S--GTLRKNL----DPFEK----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476 (597)
Q Consensus 412 lr~----~I~~V~Q~~~LF-~--gTI~eNI----~~~~~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LS 476 (597)
+|. +|++|+|||.-- | -||..-| .+... +-.+++.+.++.+++.+--. .+..-...||
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~-------rl~~yPHeLS 159 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK-------RLDAYPHELS 159 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh-------hhhhCCcccC
Confidence 775 899999999722 2 2554444 33322 33455666666666644322 2334468999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||+.||-||..+|++||-||||.|||....+.|.+-|+++.+ +..+++|||+|+.++. ||||+||.+|+|+|
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999999999999999999999999999999987754 6799999999999986 89999999999999
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=271.30 Aligned_cols=205 Identities=22% Similarity=0.300 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
-|+|+||+++|. ++++|+|||++|++||.-+|+||+|||||||++++++.++ .+|.+.+.|+..-..+. .++|++||
T Consensus 31 li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 31 LIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred eEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 499999999995 5679999999999999999999999999999999999775 68999999999998887 99999999
Q ss_pred EEeCC---CCCCCccHHhhccc--------CC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 418 IIPQD---PVLFSGTLRKNLDP--------FE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 418 ~V~Q~---~~LF~gTI~eNI~~--------~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+|+-+ -+.=+.+++|=+.. .. +.++++..+|-.. -...|.....+..=..||-|||||+-|
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l-------le~~g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL-------LELLGAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH-------HHHcchhhhccCchhhcCHhHHHHHHH
Confidence 99853 22334566666531 12 4555554433221 111344444555567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhHhhc-CEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTIMDS-DKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrlsti~~~-D~Iivl~~G~Ive 552 (597)
||||+++|++|||||||++||........+.|.++.. ..|+|+|||+.+.+..| ++++.+++|+++.
T Consensus 183 aRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999888888888754 46899999999999765 9999999999975
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=313.95 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=149.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+|.++|.. .++++
T Consensus 4 l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~l 71 (635)
T PRK11147 4 ISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVARL 71 (635)
T ss_pred EEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEEe
Confidence 889999999964 56999999999999999999999999999999999987 578999998721 36788
Q ss_pred eCCCCC-CCccHHhhcccCC-------------------CCChHHHHHHHHH------h---cHHHHHHhc---CCCchh
Q psy1502 420 PQDPVL-FSGTLRKNLDPFE-------------------KYPDYVLWTALQE------V---ELKDMIMEG---AGLNMT 467 (597)
Q Consensus 420 ~Q~~~L-F~gTI~eNI~~~~-------------------~~~~e~i~~a~~~------a---~l~~fI~~l---~GldT~ 467 (597)
+|++.. ..+++.+++..+. +..++.+...... . ...+.+... -|++
T Consensus 72 ~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-- 149 (635)
T PRK11147 72 QQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-- 149 (635)
T ss_pred ccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--
Confidence 887643 2357776642110 0001111110000 0 011122221 2442
Q ss_pred hhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe
Q psy1502 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD 546 (597)
Q Consensus 468 vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~ 546 (597)
....-..||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ +.|+|+|||+...+.. ||+|++|+
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 23445689999999999999999999999999999999999999999999887 3699999999999975 99999999
Q ss_pred CCeEEE
Q psy1502 547 SGVAVV 552 (597)
Q Consensus 547 ~G~Ive 552 (597)
+|+++.
T Consensus 228 ~G~i~~ 233 (635)
T PRK11147 228 RGKLVS 233 (635)
T ss_pred CCEEEE
Confidence 999986
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=264.23 Aligned_cols=201 Identities=25% Similarity=0.364 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+.+|. .+.||+++|++||+|+.++|+||+|+|||||+..+.||.+ ++|+|.|||.++.+++.+.|-+.+++.
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 78999999995 4679999999999999999999999999999999999985 899999999999999999999999999
Q ss_pred eCCCCCCC-ccHHhhcccCC-CC-----ChH---HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE-KY-----PDY---VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~-~~-----~~e---~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
-|+..+-. -|+||=..||+ ++ +.| -+.+|++-.++.+.- ..-=..||||||||--||-.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~----------dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS----------DRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH----------HHhHHhcccchhhhhhhheee
Confidence 99998775 59999998764 22 222 255666555443321 111247999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.++.+-++||||-.+||-+....+++.|+++.. +||+++|-|+.+.... +|+|+-|++|+++.
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~ 216 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence 999999999999999999999999999988765 7999999999999974 89999999999987
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=318.41 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=154.7
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEE-----------EcceeCCCCChHH
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIK-----------IDDIDTEDVPLSK 411 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~-----------idg~di~~~~~~~ 411 (597)
++++++|+....+|++++ .+++|+++||+||||||||||+++|+|++ |++|+|. ++|.++.++...-
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348999965456999999 89999999999999999999999999987 5789998 9999987553211
Q ss_pred --HhcC----cEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 412 --LRSN----ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 412 --lr~~----I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
.+.+ +.|++|.|.+|.+|++||+.... ..+++.++++..+ ++......-.+||||||||++|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~----------l~~~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLG----------LENILDRDISELSGGELQRVAI 223 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcC----------CchhhcCChhhCCHHHHHHHHH
Confidence 1123 44556677788899999997421 1233444444333 3333444556899999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCC
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G 548 (597)
||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 224 a~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999998668999999999999975 8999999874
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=339.99 Aligned_cols=193 Identities=25% Similarity=0.272 Sum_probs=157.7
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-c
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-G 428 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-g 428 (597)
++|+|+|+++++||.+||+||||||||||+++|+|+. +.+|+|.+||.++.+.. ..+|+.++||+|++.+|. .
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCC
Confidence 5899999999999999999999999999999999974 46899999999986554 346778999999998886 5
Q ss_pred cHHhhcccCC----------CCChHHHHHHHHHhcHHHHHHh--c-CCCchhhhC-CCCCCChhHHHHHHHHHHHccCCC
Q psy1502 429 TLRKNLDPFE----------KYPDYVLWTALQEVELKDMIME--G-AGLNMTVYE-GGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 429 TI~eNI~~~~----------~~~~e~i~~a~~~a~l~~fI~~--l-~GldT~vge-~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|++||+.+.. +.+.++..+.. .++.++. + +-.||.||+ ....||||||||++|||||+.+|+
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHI----ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH----HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 9999997531 12333221110 0112222 3 346888885 456899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCch-hH-hhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH-TI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrls-ti-~~~D~Iivl~~G~Ive 552 (597)
||+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ .+ ..||++++|++|+++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~ 291 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY 291 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEE
Confidence 9999999999999999999999999864 789999999974 45 4599999999999987
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=312.66 Aligned_cols=211 Identities=19% Similarity=0.183 Sum_probs=159.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc----ccCCceEEEcceeCCCCC--h---
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----AEVEGVIKIDDIDTEDVP--L--- 409 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l----~~~~G~I~idg~di~~~~--~--- 409 (597)
..|+++|++|+|++ +++|+|+||+|++|+++|||||||||||||+++|+|. .|++|+|.+.++++..-+ .
T Consensus 176 ~~I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 35999999999964 4699999999999999999999999999999999985 357899986555432111 1
Q ss_pred ---------HHHhcCcEEEeCCCCCCCccHHhhcccC--CCCCh----HHHHHHHHHhcHH------HHHHh-c--CCCc
Q psy1502 410 ---------SKLRSNISIIPQDPVLFSGTLRKNLDPF--EKYPD----YVLWTALQEVELK------DMIME-G--AGLN 465 (597)
Q Consensus 410 ---------~~lr~~I~~V~Q~~~LF~gTI~eNI~~~--~~~~~----e~i~~a~~~a~l~------~fI~~-l--~Gld 465 (597)
..+++.+++++|++.+...+..+|.... ...+. +++.++++..++. +-+.. + -|++
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 1135568999998876555555554321 11122 2333443333321 11111 1 3443
Q ss_pred h-hhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE
Q psy1502 466 M-TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVL 543 (597)
Q Consensus 466 T-~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Ii 543 (597)
. .....-..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||+|+
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 2 223344689999999999999999999999999999999999999999999887 6899999999999976 99999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+++.
T Consensus 413 ~l~~g~i~~ 421 (718)
T PLN03073 413 HLHGQKLVT 421 (718)
T ss_pred EEECCEEEE
Confidence 999999975
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=255.98 Aligned_cols=135 Identities=38% Similarity=0.613 Sum_probs=122.2
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHhhc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNL 434 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~eNI 434 (597)
|+|+||+|++|++++|+|++|||||||+++|+|++ +.+|+|.+||.++...+...+++.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999988 5789999999999999999999999999999999986 59999
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS 503 (597)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34556777777666544 36778888899999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-33 Score=334.03 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=157.2
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cC---CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-c
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EV---EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-G 428 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~---~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-g 428 (597)
+++|+|+|+.|+||+.++|+||||||||||+++|+|+. +. +|+|.+||.++.+... |+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999986 44 8999999999876543 788999999988886 6
Q ss_pred cHHhhcccCCC-------------CChH----------HH---HHHHHHhc------HHHHHHh--c-CCCchhhhCCC-
Q psy1502 429 TLRKNLDPFEK-------------YPDY----------VL---WTALQEVE------LKDMIME--G-AGLNMTVYEGG- 472 (597)
Q Consensus 429 TI~eNI~~~~~-------------~~~e----------~i---~~a~~~a~------l~~fI~~--l-~GldT~vge~G- 472 (597)
|++||+.+... .+.+ ++ .+++...+ .++.++. + +-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999975210 0111 11 11111111 1223333 2 33578888653
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCch--hHhhcCEEEEEeCC
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH--TIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrls--ti~~~D~Iivl~~G 548 (597)
..||||||||++|||+++.+|++|+|||||++||+.+...+.+.|+++.+ ++|+|+++|+++ ....||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 58999999999999999999999999999999999999999999999853 789999999974 44679999999999
Q ss_pred eEEE
Q psy1502 549 VAVV 552 (597)
Q Consensus 549 ~Ive 552 (597)
+++.
T Consensus 415 ~ivy 418 (1470)
T PLN03140 415 QIVY 418 (1470)
T ss_pred eEEE
Confidence 9987
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-29 Score=258.38 Aligned_cols=447 Identities=17% Similarity=0.180 Sum_probs=279.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCh-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 84 STAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPS-GR---ILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSL 159 (597)
Q Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~s-G~---l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~ 159 (597)
.++..+.+..+..++....++.+++.. .||.-.+. |. .=+++|+|+....+...+...++.-.++.++++...+.
T Consensus 178 ryle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~ 256 (728)
T KOG0064|consen 178 RYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLL 256 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555666777777777777777766 66653222 21 22458889887777777777666666655555444443
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHH
Q psy1502 160 SVNPLFSI----PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLH 235 (597)
Q Consensus 160 ~~~~~l~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~ 235 (597)
--+-.... .+.+...+...+.+.+.+..-++...+....+.+...=...+.+-.+|-.|+..+.+.+..++..+..
T Consensus 257 ~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L 336 (728)
T KOG0064|consen 257 DSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRL 336 (728)
T ss_pred hhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHH
Confidence 33332211 11111122223334444444444444444455555555677889999999999999888887776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHH--HH--HhhhhH----------HHHHHH---HHHHHHHHHHHHH
Q psy1502 236 SSTWHLFVYTNMGFAYLIDFLC-LLYLS-TILISFF--FF--ADIGGK----------VGLAVT---QTMTLMGVVQWAM 296 (597)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~--~~~~g~----------i~~~~~---~~~~~~~~~~~~~ 296 (597)
............|+...-.++. ....+ .+++..+ +. ..+.+. .-.+++ ........+..++
T Consensus 337 ~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 337 VEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222222221111110 00000 0000000 00 000010 001111 1112223333444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----C---------CCCC-CCCC----CCCCCC---CCCCcccEEEEeeEEEeCCCCc
Q psy1502 297 RQAAEVENHMISVKRLVEYTKL----E---------PEGN-LSPN----YEDENE---IWPVLGKIEFQNTNVRYLSGPR 355 (597)
Q Consensus 297 ~~~~~~~~~~~s~~ri~~~~~~----~---------~~~~-~~~~----~~~~~~---~~~~~~~I~f~nVsf~Y~~~~~ 355 (597)
...-++.+-.+--.|+++.++. . ++.. .... +..+.+ .......|.++||-.--|+...
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~v 496 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDV 496 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcce
Confidence 4444444444444555543221 0 0000 0000 000000 0011234899999887788777
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
+..+++|+|++|..+.|.||+|||||+|.++|.|++| ..|...+-- +.+|-|+||.|+.=-||+||-|
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQI 565 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQI 565 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCccccee
Confidence 8999999999999999999999999999999999998 567665421 4569999999999999999999
Q ss_pred ccC--------CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC
Q psy1502 435 DPF--------EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506 (597)
Q Consensus 435 ~~~--------~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 506 (597)
.|- +.++|.++...+..++++...+.-.|+|.+-.-. .-||||+|||+++||-++++|+--+|||+|||+-
T Consensus 566 IYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvs 644 (728)
T KOG0064|consen 566 IYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVS 644 (728)
T ss_pred ecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhcccc
Confidence 642 2578999999999999976555447788765543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 507 PKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 507 ~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
.+.|..+.++.++. +-+.|.|+||++..+.-...+-.
T Consensus 645 idvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 645 IDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999886 88999999999999877777666
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=291.53 Aligned_cols=198 Identities=24% Similarity=0.307 Sum_probs=156.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|.++|++++|+ .+++|+|+||++.+|+++||||++|||||||+++|.|.. |++|+|..++- -+|+|
T Consensus 3 ~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70 (530)
T ss_pred eEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEE
Confidence 489999999994 567999999999999999999999999999999999965 78999998641 37999
Q ss_pred EeCCCCCCCc-cHHhhcccCCC-C--ChHHHHHH------------------HHHhcHH---HHHHh-cCC--CchhhhC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEK-Y--PDYVLWTA------------------LQEVELK---DMIME-GAG--LNMTVYE 470 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~-~--~~e~i~~a------------------~~~a~l~---~fI~~-l~G--ldT~vge 470 (597)
++|++.+.++ |+++.+..+.. . -..+..++ ....+.+ .-+.. +.| +... ..
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~ 149 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR 149 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC
Confidence 9999999965 99998864321 0 00111111 1111100 11112 122 2222 23
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
.-..||||||-|++|||||+.+|+||+|||||.+||.++-..+.+-|.+. ++ |+|+|||+-..+.+ |++|+.+|.|+
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 34689999999999999999999999999999999999999999999876 55 99999999999987 89999999999
Q ss_pred EEE
Q psy1502 550 AVV 552 (597)
Q Consensus 550 Ive 552 (597)
+..
T Consensus 228 l~~ 230 (530)
T COG0488 228 LTP 230 (530)
T ss_pred eeE
Confidence 876
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-32 Score=247.20 Aligned_cols=203 Identities=26% Similarity=0.318 Sum_probs=161.5
Q ss_pred EEEEeeE--EEeC------CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH
Q psy1502 341 IEFQNTN--VRYL------SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 341 I~f~nVs--f~Y~------~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~ 411 (597)
++++|++ |.|. ....+.+.|||+.++|+++||+|.+|||||||++.|.|+. |++|+|++||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4667775 4442 1235899999999999999999999999999999999987 57999999999998777777
Q ss_pred HhcCcEEEeCCCC-CCC-----ccH-----HhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 412 LRSNISIIPQDPV-LFS-----GTL-----RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 lr~~I~~V~Q~~~-LF~-----gTI-----~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
..++|-+++|||. -|| |+| +-|-.+.+....+++.+-++.+|+...-. .-....||-|||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdha---------n~~~~~la~~QK 155 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA---------NYYPHMLAPGQK 155 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccc---------ccchhhcCchhH
Confidence 7789999999985 233 222 22222323344566888888888743211 112468999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+|+||||+-+|+|+|-|||-.+||......+..-..++- -|-.-|.|++++-.+++ +|+|+||++|+++|
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE 230 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee
Confidence 99999999999999999999999999998888776654432 37789999999999997 89999999999999
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=259.92 Aligned_cols=200 Identities=22% Similarity=0.393 Sum_probs=173.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.+++++|+.+|. ++.+++||||++++|+..|++|++|+||||.+++|+||. |++|+|.++|.+++.. .+++|||
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIGY 76 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhccc
Confidence 378999999995 467999999999999999999999999999999999987 5799999999998754 4789999
Q ss_pred EeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhc--CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEG--AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l--~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
.|-+--|+. .|+.|-|.|. ..++..|+.+- +..|.+.+ .|+.| .+-..||-|..|+|.+--|++++
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~~~---~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGKKT---KKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccccc---chHHHhhhhhhHHHHHHHHHhcC
Confidence 999999996 6999999874 35666665543 34667665 34433 44568999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+++|||||+|+|||.+.+.+.+++.++. .|.|+|+-+||++-++. ||+++.|++|+-|-
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~ 210 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL 210 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEE
Confidence 99999999999999999999999998876 48999999999999975 99999999998775
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=249.54 Aligned_cols=205 Identities=24% Similarity=0.256 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
++++|++.+-.+.+++|+++||+|++||+.||.||+|||||||.+.|+|. | .++|+|++||.||.+++++.. |.-|
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 78999999885445899999999999999999999999999999999997 5 479999999999999998764 5679
Q ss_pred EEEeCCCCCCCc-cHHhhcccC--C--C------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPF--E--K------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~--~--~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
.+-+|.|.=+.| |+.+=|+.. . . ...+++.++++..++++.. ++-.|+ ..||||+|.|.-|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-----l~R~vN---~GFSGGEkKR~Ei 155 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF-----LERYVN---EGFSGGEKKRNEI 155 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH-----hhcccC---CCcCcchHHHHHH
Confidence 999999999998 888777531 1 1 1244566777777665511 122233 4799999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhc--CEEEEEeCCeEEEe
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDS--DKVLVMDSGVAVVS 553 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~--D~Iivl~~G~Ive~ 553 (597)
+..++-+|++.|||||-|+||..+-+.|-+.++++.. ++++++|||+-..+... |++.||-+|+|+..
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999988764 78999999999988875 99999999999983
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=236.07 Aligned_cols=193 Identities=23% Similarity=0.326 Sum_probs=154.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHhcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr~~ 415 (597)
.+.++||+..-+ +...|.|+||+|.+||.+-|.||||||||||+.-+.|..+ -+|++.+|++++..++.. ++|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhh
Confidence 367899998775 3568999999999999999999999999999999999763 379999999999988865 789
Q ss_pred cEEEeCCCCCCC-ccHHhhcccC--CC----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 416 ISIIPQDPVLFS-GTLRKNLDPF--EK----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 416 I~~V~Q~~~LF~-gTI~eNI~~~--~~----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
+|+.+||++||+ -++-+||.+. .+ +.......|+++.+++++ -......||||||-|+|+-|+
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~----------f~~dP~tlSGGQrARvaL~R~ 148 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA----------FHQDPATLSGGQRARVALLRA 148 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchh----------hhcChhhcCcchHHHHHHHHH
Confidence 999999999997 5999999763 22 223334445555554443 345567999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEeccCchhHhhcCEEEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRK-KF-ADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
|+..|+.|+||||+|.||..-.....+-..+ .. .+.-+|+|||++.-+..-.|++.|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999766665544322 21 377899999999987755555544
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=296.30 Aligned_cols=205 Identities=23% Similarity=0.317 Sum_probs=170.9
Q ss_pred ccEEEEeeEEEeCCC----CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChH
Q psy1502 339 GKIEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLS 410 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~ 410 (597)
-.++|+|+++.-+.. +.+|+|||.+++|||..||.||||||||||++.|+|..+ .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 358999999988543 679999999999999999999999999999999998653 5799999994 35677
Q ss_pred HHhcCcEEEeCCCCCCC-ccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhC-CCCCCChh
Q psy1502 411 KLRSNISIIPQDPVLFS-GTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYE-GGTNFSVG 478 (597)
Q Consensus 411 ~lr~~I~~V~Q~~~LF~-gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge-~G~~LSGG 478 (597)
.+++..|||+||..++. -||+|++.+. +..+.++ +.+..+.-++. +==||.+|. ++..+|||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~------~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE------KCADTLIGNPGIRGLSGG 174 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh------hhccceecCCCCCccccc
Confidence 88999999999999996 5999999642 2234333 33333333332 124778873 44689999
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH--hhcCEEEEEeCCeEEE
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI--MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti--~~~D~Iivl~~G~Ive 552 (597)
||+|++||--++.||+||+||||||+||+.+...+.+.|+++.+ |||||+.=|.++.- ...|++++|.+|+++-
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 99999999999999999999999999999999999999998764 89999999999875 4689999999999986
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=258.56 Aligned_cols=190 Identities=23% Similarity=0.315 Sum_probs=126.5
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHH-HHHhccccCCceEEEc-c------eeCCCC---ChHHHh-cCcEEE
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI-AAIFRLAEVEGVIKID-D------IDTEDV---PLSKLR-SNISII 419 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~-~LL~~l~~~~G~I~id-g------~di~~~---~~~~lr-~~I~~V 419 (597)
.+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+ ....++ ...++.
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 345699999999999999999999999999996 4432 12333211 0 011000 111112 133444
Q ss_pred eCCCCC-CC--ccHH---hhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVL-FS--GTLR---KNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~L-F~--gTI~---eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
.|++.. ++ .++. +...+... ...++..+ ..+.++. -|+.. ........||||||||++||||+++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~l~~-~~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE------RLGFLVD-VGLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH------HHHHHHH-CCCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 454432 11 1211 11111000 00011110 0122222 34544 3667788999999999999999999
Q ss_pred CC--CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 492 NN--VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 492 ~p--~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
+| ++|||||||++||+.+...+.+.|.++. .+.|+|+|||+++.+..||+|++| ++|+|++
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 98 5999999999999999999999998864 478999999999999999999999 9999987
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=245.59 Aligned_cols=178 Identities=24% Similarity=0.284 Sum_probs=146.3
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
.++|+||||++.+||++||||++|||||||+++|.|.| |++|+|.++|.--.-+.. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 36899999999999999999999999999999999988 578999999853322221 233322 247899
Q ss_pred hcccC---CCCC----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCC
Q psy1502 433 NLDPF---EKYP----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505 (597)
Q Consensus 433 NI~~~---~~~~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaL 505 (597)
||.+. ...+ ++.+.+..+-|++.||+..| | .+.|-|++-|||.|=|.--+|+|||+||+.|..
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~P------v----ktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQP------V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCc------h----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99642 1233 44566667777788887665 2 478999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 506 DPKTDLLIQRTIRKK-FADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 506 D~~te~~I~~~l~~~-~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.=.++=.+.++++ .+++|+|+|+|.++.+++ ||++++|++|+|..
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 999777777778777 678999999999999986 99999999999987
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=249.83 Aligned_cols=163 Identities=20% Similarity=0.194 Sum_probs=131.8
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccC----------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~----------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
++++|++++| .++|+||||||||||+++|.++.++ .|++.++|.++.... .+.+|++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPA---NFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCC---ceEEEEEEEEcCCCc-
Confidence 5789999999 9999999999999999999987532 257888888775422 367899999999887
Q ss_pred ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecCCC
Q psy1502 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV----RNNVILVLDEATA 503 (597)
Q Consensus 428 gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll----~~p~ILILDEaTS 503 (597)
+.. ...+++.++++. .++ .......||||||||++||||+. ++|+++||||||+
T Consensus 89 --------~~~-~~~~~~~~~l~~----------~~~---~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~ 146 (197)
T cd03278 89 --------YSI-ISQGDVSEIIEA----------PGK---KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA 146 (197)
T ss_pred --------eeE-EehhhHHHHHhC----------CCc---cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 111 123445555444 111 22345689999999999999986 5779999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 504 aLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
+||+++...+.+.|+++.++.|+|+|||++..+..||+++.+..
T Consensus 147 ~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 147 ALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999998778999999999999999999998854
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=226.07 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=160.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcc-----eeCCCCChHH---
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDD-----IDTEDVPLSK--- 411 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg-----~di~~~~~~~--- 411 (597)
++++++|..|... .--+||||++-|||..||||.||||||||+++|.+ +.|+.|+|.++. .|+..++...
T Consensus 7 L~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 7 LSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred eeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 7889999999543 36889999999999999999999999999999996 678899999865 3444444333
Q ss_pred -HhcCcEEEeCCCCCCCccHHhhccc----CCCCChHHHHHH-H-----HHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 412 -LRSNISIIPQDPVLFSGTLRKNLDP----FEKYPDYVLWTA-L-----QEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 412 -lr~~I~~V~Q~~~LF~gTI~eNI~~----~~~~~~e~i~~a-~-----~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
+|..-|+|.|+| +|-+++ |.++-+ ..+.. . -++.+.+|.++.+=-.+.+.+....+|||.+
T Consensus 86 L~RTeWG~VhQnP-------~DGLRm~VSAG~NiGE-Rlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 86 LLRTEWGFVHQNP-------RDGLRMQVSAGGNIGE-RLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HhhhccceeecCc-------cccceeeeccCCccch-hHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 345679999999 333332 222221 11110 0 0122347777653334567888999999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||+.|||-|...|++.++||||-+||....+++.+.++.+.. +-.+++|||++..++- +||..||++|+++|
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999999999999999999988765 5689999999999985 99999999999999
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=232.88 Aligned_cols=202 Identities=21% Similarity=0.343 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcc-eeCCCCChHHH-hcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDD-IDTEDVPLSKL-RSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg-~di~~~~~~~l-r~~I 416 (597)
.++++||+.++++ -.+|+|+||++.+||.-+|+||+|+||||+++.|.|-. |++|+++++| .|++.++.... |.-|
T Consensus 5 iL~~~~vsVsF~G-F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFGG-FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEcc-eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 3789999999954 45999999999999999999999999999999999987 5679999999 99999986665 5569
Q ss_pred EEEeCCCCCCCc-cHHhhcccC--C----------CCC---hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPF--E----------KYP---DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~--~----------~~~---~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
|-=+|.|..|.. |++||+... . ..+ ..++.+.+...++ .-....-...||-|||
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL----------~~~~~~~A~~LSHGqK 153 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL----------GDERDRLAALLSHGQK 153 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHccc----------chhhhhhhhhhccchh
Confidence 999999999975 999998531 1 111 1234444444443 3334445579999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|++-|+--+..+|++|+||||++++-.+.....-+-|+++.+.+++++|-|++..++. ||++-||..|.+..
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee
Confidence 9999999999999999999999999665555667788888889999999999999985 99999999999986
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=243.89 Aligned_cols=191 Identities=25% Similarity=0.338 Sum_probs=147.1
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEe-CCCCCC-CccHH
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIP-QDPVLF-SGTLR 431 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~-Q~~~LF-~gTI~ 431 (597)
++.+||||+||+|+.++++|++|+||||++|+|.|+. |++|.|.++|.+-..- .+++-+++++|. |...|. +--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechhh
Confidence 4899999999999999999999999999999999975 8899999999987653 344445555553 322211 11122
Q ss_pred hhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 432 KNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
|-+... .+++|.+..+-. +|..+.-+++..+-..-..||=|||-|.-||-||+++|+||+|||||=+||..
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~------~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~ 190 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL------DFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH------HHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence 222110 133444332211 22222346777777778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 509 TDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 509 te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+...|.+.+++.. .++||+..||.++-+.. ||||+.++.|+++-
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 9999999997754 47899999999999965 99999999999997
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=251.82 Aligned_cols=189 Identities=25% Similarity=0.350 Sum_probs=131.6
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-----c-cc-----cCCc-----------eEEEcceeCCCCChHH-
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-----R-LA-----EVEG-----------VIKIDDIDTEDVPLSK- 411 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-----~-l~-----~~~G-----------~I~idg~di~~~~~~~- 411 (597)
..|+|+|++||.|..++|+|+||||||||++-++ + +. |..+ -|.||..+|..-....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998552 2 21 1112 2445554443221100
Q ss_pred ---------Hhc----------------CcEEEeCCCCC-CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCc
Q psy1502 412 ---------LRS----------------NISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465 (597)
Q Consensus 412 ---------lr~----------------~I~~V~Q~~~L-F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~Gld 465 (597)
+|+ .+.|..++... .+.|+.||+.+..... ++ ....+.++. -|++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~------~~~~~~L~~-vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KI------ARKLQTLCD-VGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hH------HHHHHHHHH-cCCc
Confidence 000 12222222221 1234444443321110 01 111122222 3666
Q ss_pred h-hhhCCCCCCChhHHHHHHHHHHHccC---CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcC
Q psy1502 466 M-TVYEGGTNFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 466 T-~vge~G~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D 540 (597)
. ..++....||||||||++|||||.++ |+++||||||++||+.+...+.+.|.++.+ +.|+|+|+|++..++.||
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 5 47888999999999999999999996 799999999999999999999999988764 789999999999999999
Q ss_pred EEEEE------eCCeEEE
Q psy1502 541 KVLVM------DSGVAVV 552 (597)
Q Consensus 541 ~Iivl------~~G~Ive 552 (597)
+|++| ++|+|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~ 257 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVA 257 (261)
T ss_pred EEEEecCCcCCCCCEEEE
Confidence 99999 8999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=270.24 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-++++|++++|++++++++++||.|.+|++||||||+|+|||||+++|+|- -|.+|+|.++- .-+|||
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~igy 389 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVKIGY 389 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceEEEE
Confidence 489999999997667899999999999999999999999999999999995 46799998753 136999
Q ss_pred EeCCC-CCCC-ccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDP-VLFS-GTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~-~LF~-gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
.+|+. .++. .|+.|++.-.. +..+.+++..+...++..- - +...-..||||||-|+.+|+.++.+|.+
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~-----~----~~~~v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE-----D----QEKPVGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH-----H----HhCchhhcCHhHHHHHHHHHHhccCCCE
Confidence 99988 3443 48999987533 3346667777666554221 1 2333458999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCchhHhhH
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKD 562 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g~y~~l~ 562 (597)
|||||||..||.+|-..+.++|.+. +-|+|+|||+...+.+ |++|+++++ ++.+ -.|-|.+..
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~-~~g~y~~y~ 524 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEE-FEGGYEDYL 524 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeE-cCCCHHHHH
Confidence 9999999999999999999999987 4599999999999987 899999998 5554 334454443
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=246.81 Aligned_cols=192 Identities=17% Similarity=0.112 Sum_probs=144.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEc-CCcEEEEEcCCCCCHHHHHHHHhc-cc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIH-PKEKIGIVGRTGAGKSSLIAAIFR-LA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~-~G~~vaIVG~SGsGKSTL~~LL~~-l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.|+++|+. +|.+. ++|+|+.. +|+.++|+||||||||||+++|.+ +| +..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 58999998 77433 56777654 589999999999999999999995 66 344555443 222233344456789
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-----
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR----- 491 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~----- 491 (597)
++++|++ +....+.++. ..+.++..+... ....++++.+...+.+||||||||++||||++.
T Consensus 79 ~~~f~~~----~~~~~~~r~~-gl~~~~~~~~~~--------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 79 SFTFQLG----GKKYRVERSR-GLDYDQFTRIVL--------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EEEEEEC----CeEEEEEEec-CCCHHHHHHhhh--------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 9999997 3344444442 444444433221 011346667778888999999999999999974
Q ss_pred -----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 492 -----NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 492 -----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|+++++|-+
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988865 7899999999998865 799999999854
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=251.26 Aligned_cols=189 Identities=21% Similarity=0.249 Sum_probs=136.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----------------cCCc--------
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----------------EVEG-------- 395 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----------------~~~G-------- 395 (597)
|+++|.- +|. +..++.+++ |++++|+||||||||||+++|.++. +.+|
T Consensus 4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 5666541 243 345777776 8999999999999999999998432 2234
Q ss_pred eEEEcceeCCCC---ChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHH----------HHHhcC
Q psy1502 396 VIKIDDIDTEDV---PLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD----------MIMEGA 462 (597)
Q Consensus 396 ~I~idg~di~~~---~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~----------fI~~l~ 462 (597)
+|.+++.+-... .....+++++++||++.+++ ..++.++++.+++..++.. .+..+.
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~ 146 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLT 146 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhh
Confidence 455554322110 12234566777776665533 2346677777777766532 111121
Q ss_pred CCchhhhCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh
Q psy1502 463 GLNMTVYEGGTNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538 (597)
Q Consensus 463 GldT~vge~G~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~ 538 (597)
+++....+.+..||||||||++||||++ ++|+++||||||++||+.+...+.+.|.++.++.|+|+++|+.+..+.
T Consensus 147 ~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~ 226 (243)
T cd03272 147 NMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEV 226 (243)
T ss_pred hccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh
Confidence 2233356788899999999999999996 468999999999999999999999999998778899999999988888
Q ss_pred cCEEEEEe
Q psy1502 539 SDKVLVMD 546 (597)
Q Consensus 539 ~D~Iivl~ 546 (597)
||+|++|+
T Consensus 227 ~d~i~~l~ 234 (243)
T cd03272 227 ADKFYGVK 234 (243)
T ss_pred CCEEEEEE
Confidence 99999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=223.84 Aligned_cols=186 Identities=22% Similarity=0.318 Sum_probs=155.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
++.+|++..- ++..++.++||++.+||.+-|+||+|||||||+++|+|+. |.+|+|.++|.+++... +++++..-|+
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yL 80 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYL 80 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHh
Confidence 3455665544 3456899999999999999999999999999999999986 67899999999998764 3457788888
Q ss_pred eCCCCCCC-ccHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
.-.+-+-. -|++||+.|.. ..+++.+++|+..+++.++. |..+ .+||-||+.|+||||-++..+|
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~------dlp~----~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE------DLPV----GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc------ccch----hhcchhHHHHHHHHHHHcCCCC
Confidence 88888775 59999998753 35678899999999987763 4444 3899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD 538 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~ 538 (597)
+.||||||+|||.+.+..+-.-+.... ++-.||..||....+..
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999888776543 57789999999776643
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=212.61 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=142.3
Q ss_pred EEEEeeEEEe----CCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcc----eeCCCCCh
Q psy1502 341 IEFQNTNVRY----LSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDD----IDTEDVPL 409 (597)
Q Consensus 341 I~f~nVsf~Y----~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg----~di~~~~~ 409 (597)
+..+||+.++ .++ -|||+|+||+++.||++.+=||||||||||++.|-+-| |++|+|.+-. +|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 6788887766 122 37999999999999999999999999999999999988 7899999832 24444443
Q ss_pred HH----HhcCcEEEeCCCCCCCc-----cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc---CCCchhhhCCCCCCCh
Q psy1502 410 SK----LRSNISIIPQDPVLFSG-----TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG---AGLNMTVYEGGTNFSV 477 (597)
Q Consensus 410 ~~----lr~~I~~V~Q~~~LF~g-----TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l---~GldT~vge~G~~LSG 477 (597)
.. .|+.||||+|---.... -+.|-+. ....+.+.....+ .+....+ +.+- .=-...+||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll-~~gv~~~~a~~~a-----~~Ll~rLnlperLW---~LaPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKA-----ADLLTRLNLPERLW---SLAPATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH-HcCCCHHHHHHHH-----HHHHHHcCCCHHHh---cCCCcccCC
Confidence 32 46789999995332221 1122221 1122222221111 1222221 1111 112468999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
|++||+-|||+++-|-|||+|||||++||..+.+.|.+.|++.. +|..+|=|=|+-+.-.. |||++-|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999997654 58899999999876554 899998754
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-27 Score=234.75 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=136.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc-cC-CceEEEcce-eCCCCC--hHHHhcCcEEEeCCCC---------CC-CccHH
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA-EV-EGVIKIDDI-DTEDVP--LSKLRSNISIIPQDPV---------LF-SGTLR 431 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~-~~-~G~I~idg~-di~~~~--~~~lr~~I~~V~Q~~~---------LF-~gTI~ 431 (597)
...++||||||||||||++.|+++. +. .|++...|. |+-... ....+.+|++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999975 43 478888777 432211 1123458999999962 22 35888
Q ss_pred hhcccCC---------CCChHHHHHHHHHhcHH----H------HHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHc-
Q psy1502 432 KNLDPFE---------KYPDYVLWTALQEVELK----D------MIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 432 eNI~~~~---------~~~~e~i~~a~~~a~l~----~------fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll- 490 (597)
+|+..+. ....+++.++++.+++. . -|.++ +. ..........||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 8885421 12346677777777653 0 12222 11 13345667899999999999999997
Q ss_pred ---cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 491 ---RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 491 ---~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
++|+++||||||++||+++...+.+.|+++.++.|+|+|||+.+.+..||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888899999999999999999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-27 Score=231.18 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=134.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHh-cCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR-SNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr-~~I~~ 418 (597)
.|+++|.- +|. +..+++++++ +.+||+||+||||||++++|.. ++|.+.. ..| +++++
T Consensus 5 ~l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~---------~~G~~~~-----~~~~~~i~~ 63 (212)
T cd03274 5 KLVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF---------VFGFRAS-----KMRQKKLSD 63 (212)
T ss_pred EEEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH---------HhccCHH-----HhhhhhHHH
Confidence 47788876 674 4568999987 8999999999999999999972 3444332 223 67999
Q ss_pred EeCCCCCCCc-cHHhhcccCCCCChHHHH------HHHHH-----hcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFEKYPDYVLW------TALQE-----VELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~------~a~~~-----a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++|+..+++. |.++++.+......-+.. ..... ..+ ..+..+ ++.++. ...||||||||++|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~----~~~lS~G~~~r~~l 138 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKN----ISNLSGGEKTLSSL 138 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccc----hhhcCHHHHHHHHH
Confidence 9999887764 788887654321110000 00000 000 011122 444544 35899999999999
Q ss_pred HHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 486 ARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 486 ARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|||++ ++|++++|||||++||+++...+.+.|+++.++.|+|+|||+....+.||++++|..
T Consensus 139 a~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 139 ALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99996 358999999999999999999999999999888899999999988889999999854
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=223.89 Aligned_cols=163 Identities=19% Similarity=0.201 Sum_probs=126.4
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHh----ccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCC-----CCCC-c
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIF----RLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP-----VLFS-G 428 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~----~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~-----~LF~-g 428 (597)
.++++.+| +++|+||||||||||++.|. |.. +..|.+.-+...+.. ..-+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34667777 99999999999999999995 543 445666522222222 23467899999998 4443 3
Q ss_pred cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH------HHHHHHHccCCCEEEeecCC
Q psy1502 429 TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL------ICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 429 TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR------IaIARAll~~p~ILILDEaT 502 (597)
|+.+|+.+. ..+++.+. +.+....|||||+|| ++||||+..+|++++|||||
T Consensus 92 ~~~~~~~~~---~~~~~~~~-------------------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 92 AILENVIFC---HQGESNWP-------------------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred hHhhceeee---chHHHHHH-------------------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 889998763 22332221 145567999999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 503 ANVDPKTDL-LIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 503 SaLD~~te~-~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
++||+++.. .+.+.|.++.+ ++|+|+|||++..+..||+|++|++.
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999998 99999988765 68999999999999999999999653
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-26 Score=239.29 Aligned_cols=191 Identities=23% Similarity=0.329 Sum_probs=157.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|-|.||+|.|++++.+++++||-|..+++||+|||+|+|||||+|+++|.. |..|.|.-.- +.++++
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~~ 457 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLPR 457 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccchh
Confidence 4889999999987778999999999999999999999999999999999964 7889886533 233444
Q ss_pred EeC---CCCCCCccHHhhccc-CC-CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQ---DPVLFSGTLRKNLDP-FE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q---~~~LF~gTI~eNI~~-~~-~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
-.| +....+-|.-|++.. +. .-+.+++...+...|+... ..+..+ .+||+|||-|++.||..++.|
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd-----~q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGD-----AQVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcc-----ccccch----hhcccccchhHHHHHHHhcCC
Confidence 444 334567778888764 23 3456677777777776421 122222 489999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.||+|||||++||.++-....++|++. .-++|.|+|..-.|.+ +++|.+.+||.+..
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 999999999999999999999999987 4589999999999987 89999999999876
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-26 Score=260.61 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=162.5
Q ss_pred CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHhcCcEEEeCCCC-CCC
Q psy1502 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV-LFS 427 (597)
Q Consensus 352 ~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~-LF~ 427 (597)
+.+.+|+||+=-++||..+|++|+||||||||+++|+|-. ..+|+|+|||.+..+ +..++.+|||.|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 3457999999999999999999999999999999999753 358999999999765 778999999999665 555
Q ss_pred ccHHhhcccC------CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC-CEE
Q psy1502 428 GTLRKNLDPF------EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN-VIL 496 (597)
Q Consensus 428 gTI~eNI~~~------~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p-~IL 496 (597)
-||||-|.+. .+.+++| ++++.+..++.++- |..||.-|..||.+||.|+.||=-|+.|| .||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 7999999642 2455554 45555555555442 55799999999999999999999999999 899
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH--hhcCEEEEEeC-CeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI--MDSDKVLVMDS-GVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti--~~~D~Iivl~~-G~Ive 552 (597)
.||||||+||+++...|++.++++. .|+|+++.=|.+|.. +..|+++.|+. |+.|-
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 9999999999999999999999986 489999999999875 67999999976 57664
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=261.33 Aligned_cols=204 Identities=20% Similarity=0.301 Sum_probs=174.6
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-ChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV-PLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~-~~~~lr~~I 416 (597)
..+..+|++..|+....+.+++||.|++||+.|+-|++||||||++++|.|.. |++|++.++|.|+..- +.+..++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 35789999999965444999999999999999999999999999999999987 5789999999999864 445689999
Q ss_pred EEEeCCCCCCC-ccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
||+||+..|++ -|.||.+.+. +.....+ +.+.++..++.++ .++. -.++|||+|.|++.|-|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~------~~~~----~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY------ANKQ----VRTYSGGNKRRLSFAIA 712 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh------hccc----hhhCCCcchhhHHHHHH
Confidence 99999999997 5999999653 2333323 5555555555544 3333 35899999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCc-EEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
++-+|++++|||||+++||.+.+.+.+.|.+..++. .+|..||.++..+. |||+..|.+|++..
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence 999999999999999999999999999999988754 99999999999986 99999999999987
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-26 Score=207.49 Aligned_cols=199 Identities=19% Similarity=0.274 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
+.++||+.+- -|-.+|.++..||.+=+|||+|||||||+.-+.|+.|.+|+|.++|.|+..++...+-++=+|..
T Consensus 4 ~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLs 78 (248)
T COG4138 4 MQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLS 78 (248)
T ss_pred eeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHh
Confidence 5667776532 35668999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-----CC-
Q psy1502 421 QD-PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR-----NN- 493 (597)
Q Consensus 421 Q~-~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~-----~p- 493 (597)
|+ ...|...+..-+++..+. .+ .+..-+.|..+-+++-.+|..-..||||+.||+-+|-..+. ||
T Consensus 79 Qqq~p~f~mpV~~YL~L~qP~--~~------~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 79 QQQTPPFAMPVWHYLTLHQPD--KT------RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred hccCCcchhhhhhhhhhcCch--HH------HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 75 458999999999875433 21 12222444444566777888888999999999999999887 33
Q ss_pred -CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCch-hHhhcCEEEEEeCCeEEE
Q psy1502 494 -VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLH-TIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 -~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrls-ti~~~D~Iivl~~G~Ive 552 (597)
++||||||.++||...+..+-..|.+++. +.|+||-.|+|+ |+++||++..+..|++..
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 69999999999999999988888888764 899999999986 789999999999999876
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=229.66 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH-HHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS-KLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~-~lr~~I~~ 418 (597)
++++|++.. ..++|+||++.+||.+||.|--|||+|=|+..|.|..+ .+|+|.+||+++.--++. ..+.-|+|
T Consensus 264 l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~ 338 (500)
T COG1129 264 LEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338 (500)
T ss_pred EEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEe
Confidence 667877652 25889999999999999999999999999999999775 689999999998887754 67888999
Q ss_pred EeCCCC---CC-CccHHhhcccC--CCCChH-HHHHHHHHhcHHHHHHhc----CCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 419 IPQDPV---LF-SGTLRKNLDPF--EKYPDY-VLWTALQEVELKDMIMEG----AGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 419 V~Q~~~---LF-~gTI~eNI~~~--~~~~~e-~i~~a~~~a~l~~fI~~l----~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
||-|-- || ..||++||.+. ...... -+....+.+...+++..+ .+.+.. -.+||||-.|++.|||
T Consensus 339 v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~----v~~LSGGNQQKVvlar 414 (500)
T COG1129 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP----IGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch----hhcCCchhhhhHHHHH
Confidence 998543 44 67999999763 111111 244555556667777775 233333 4589999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.|..+|+||||||||-++|.-+.+.|.+.|+++.+ |+++|+||-.+..+. .||||+||.+|+|+.
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998875 799999999999887 699999999999987
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=222.30 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=137.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEccee-C-C-----CCChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID-T-E-----DVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~d-i-~-----~~~~~~ 411 (597)
.|+++|. -+|.+. .+|...+ ..++|+||+|||||||+..|.++ ++..|++..++.+ + . ..+...
T Consensus 3 ~i~l~nf-~~~~~~------~~~~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 3 RLELENF-KSYKGR------HVIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEEECc-cccCCC------eeecCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 4677775 335321 1223233 39999999999999999999985 4556777654321 1 1 111112
Q ss_pred HhcCcEEEeCCC--CCCCccHHhhcc---c-CCCCChHHHHHHHHHhcHHHHHHh--c-CCCchhhhCC---------CC
Q psy1502 412 LRSNISIIPQDP--VLFSGTLRKNLD---P-FEKYPDYVLWTALQEVELKDMIME--G-AGLNMTVYEG---------GT 473 (597)
Q Consensus 412 lr~~I~~V~Q~~--~LF~gTI~eNI~---~-~~~~~~e~i~~a~~~a~l~~fI~~--l-~GldT~vge~---------G~ 473 (597)
..-.+.+..|++ .++..+++++-. . +...+.+++.+.++.++++.+... . +|--+.+.+. ..
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 333455555543 244555555432 1 234677778888888887533211 1 3332333222 26
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 474 NFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
.||||||||++||||++. +|+++||||||++||+.+...+.+.|.++.+ +.|+|+|||+.+.+..||++++|..
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 899999999999999976 4899999999999999999999999998865 7899999999999999999999854
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=244.46 Aligned_cols=91 Identities=23% Similarity=0.348 Sum_probs=83.7
Q ss_pred CCCch-hhhCCCCCCChhHHHHHHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 462 AGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT-~vge~G~~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
-|++. .++.....||||||||++|||||+++| +++||||||++||+++...+.+.|+++. .+.|+|+|+|++..+
T Consensus 817 vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i 896 (943)
T PRK00349 817 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVI 896 (943)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 36654 468888999999999999999999999 9999999999999999999999999875 478999999999999
Q ss_pred hhcCEEEEE------eCCeEEE
Q psy1502 537 MDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 537 ~~~D~Iivl------~~G~Ive 552 (597)
..||+|++| ++|+|+.
T Consensus 897 ~~aD~ii~Lgp~~G~~~G~Iv~ 918 (943)
T PRK00349 897 KTADWIIDLGPEGGDGGGEIVA 918 (943)
T ss_pred HhCCEEEEecCCcCCCCCEEEE
Confidence 999999999 7999987
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-24 Score=253.35 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=141.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHH---------HHhccccC----C-c----eEEEcc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA---------AIFRLAEV----E-G----VIKIDD 401 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~---------LL~~l~~~----~-G----~I~idg 401 (597)
.++++|++. ..|+|+||+|++|+.++|+|+||||||||++ +|.|..++ + + -|.||-
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 478888762 3799999999999999999999999999999 44443211 1 1 134444
Q ss_pred eeCCCCC----h------HHHh---------cCc-----EEEeCC------------------C----------------
Q psy1502 402 IDTEDVP----L------SKLR---------SNI-----SIIPQD------------------P---------------- 423 (597)
Q Consensus 402 ~di~~~~----~------~~lr---------~~I-----~~V~Q~------------------~---------------- 423 (597)
.++..-. . +.+| ++. .+.+|. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 3333211 1 1333 111 122221 0
Q ss_pred ----CCCC-ccHHhhcccCCC-C-----ChHHHHHHHHHhcHHHHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHc-
Q psy1502 424 ----VLFS-GTLRKNLDPFEK-Y-----PDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 424 ----~LF~-gTI~eNI~~~~~-~-----~~e~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll- 490 (597)
..+. -||.||+.++-. + +.+++.+.++ .++. -|++.. .++....||||||||++|||||+
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~-vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS-LGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH-cCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 1233 377888766311 1 1222332221 1111 477765 78888999999999999999998
Q ss_pred --cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEe------CCeEEE
Q psy1502 491 --RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMD------SGVAVV 552 (597)
Q Consensus 491 --~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~------~G~Ive 552 (597)
++|++|||||||++||+.+...+.+.|.++. .+.|+|+|+|++..++.||+|++|+ +|+++.
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~ 897 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLA 897 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEE
Confidence 6999999999999999999999999998875 4789999999999998899999996 788887
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=236.83 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=83.3
Q ss_pred CCCch-hhhCCCCCCChhHHHHHHHHHHHcc---CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 462 AGLNM-TVYEGGTNFSVGQRQLICLARAIVR---NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT-~vge~G~~LSGGQrQRIaIARAll~---~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
-|++. .+++....|||||+||++|||||.+ +|+++||||||++||+.+...+.+.|.++. ++.|+|+|+|++..+
T Consensus 815 ~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i 894 (924)
T TIGR00630 815 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVI 894 (924)
T ss_pred cCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 36654 4788899999999999999999997 599999999999999999999999999875 478999999999999
Q ss_pred hhcCEEEEE------eCCeEEE
Q psy1502 537 MDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 537 ~~~D~Iivl------~~G~Ive 552 (597)
+.||+|++| ++|+|+.
T Consensus 895 ~~aD~ii~Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 895 KTADYIIDLGPEGGDGGGTIVA 916 (924)
T ss_pred HhCCEEEEecCCccCCCCEEEE
Confidence 999999999 7999987
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=198.89 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=117.6
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEE--cceeCCCC-ChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI--DDIDTEDV-PLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~i--dg~di~~~-~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
+++++++.+| ..+|+||+|||||||+..|.-.. .|+... -|..+.++ ....-...|.+++|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l--~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL--GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh--cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 5677777776 77999999999999999986321 111111 12111110 00111456888888876655 2
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH----ccCCCEEEeecCCCCCCHHHH
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI----VRNNVILVLDEATANVDPKTD 510 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~~te 510 (597)
..++.+ .+.+.++++. .....+...+||||||||++||||+ +.+|+++||||||++||+.+.
T Consensus 84 ----~~~~~~------~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 84 ----PLCVLS------QDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred ----cCCHHH------HHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 111111 1122233332 2223445679999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHhcC----CcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 511 LLIQRTIRKKFA----DCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 511 ~~I~~~l~~~~~----~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
..+.+.|.+... ++|+|+++|++..+..+|+|-+|..|+
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999988643 358999999999999999999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=210.16 Aligned_cols=205 Identities=23% Similarity=0.345 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeC-CCCChHHHhc-Cc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDT-EDVPLSKLRS-NI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di-~~~~~~~lr~-~I 416 (597)
-++++|++..-+.+.+.+++|||++.+||.+||.|-+|-|-+-|+.+|+|+. +.+|+|.++|+|+ ..++...+|+ -+
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 4789999987644456899999999999999999999999999999999997 5679999999997 6667777665 69
Q ss_pred EEEeCCCC----CCCccHHhhcccCCC----------CChHHHHHHHHHhcHHHHHHhcCCCchh---hhCCCCCCChhH
Q psy1502 417 SIIPQDPV----LFSGTLRKNLDPFEK----------YPDYVLWTALQEVELKDMIMEGAGLNMT---VYEGGTNFSVGQ 479 (597)
Q Consensus 417 ~~V~Q~~~----LF~gTI~eNI~~~~~----------~~~e~i~~a~~~a~l~~fI~~l~GldT~---vge~G~~LSGGQ 479 (597)
+|||.|-. .-+.|+.||+.+... .+..++.+.++ +.+++ ||-. ....-.+||||+
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~---fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEE---FDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHH---cCccCCCCCcchhhcCCcc
Confidence 99999873 567899999965321 12233332222 33333 3322 123346899999
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +++.+++|+-.|..+.. ||||.||.+|+|+.
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999999999987765 58899999999999965 99999999999987
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-20 Score=183.90 Aligned_cols=228 Identities=16% Similarity=0.281 Sum_probs=172.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 27 ILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYF--SLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFE 104 (597)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 104 (597)
+...+.++.++..|.++..+++........ .....+...++ ++.++.........+...+.+.++..++|.++++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (275)
T PF00664_consen 6 LLSILSGLLSLLFPLLLGQIIDSLSSGNSD---NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFE 82 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888874433211 00111111111 1222223333344445667889999999999999
Q ss_pred HHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 105 AVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYL 184 (597)
Q Consensus 105 ~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~ 184 (597)
+++++|+++|+++++|++++|+++|++.+++.+...+..++..++.++++++++++++|.++++++++.++.+++...+.
T Consensus 83 ~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 162 (275)
T PF00664_consen 83 KLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFS 162 (275)
T ss_dssp HHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887777777787
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 185 RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLC 257 (597)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (597)
+..++..+......++..+.+.|.++|+++||+||.|+++.++|++..++..+...+......+.......+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 163 KKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666777788999999999999999999999999999999888766555444444444444444433
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=211.69 Aligned_cols=201 Identities=21% Similarity=0.283 Sum_probs=163.2
Q ss_pred ccEEEEeeEEEeCCCC-ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
..+++.+|+|.|+.++ +.+.++++.+..-+++++||++|+||||+++++.+ +.|+.|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 4699999999995444 79999999999999999999999999999999998 678899988765 7889
Q ss_pred EEEeCCCCCCCccHHhhcc-------cCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCC-CCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSGTLRKNLD-------PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-TNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~-------~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G-~~LSGGQrQRIaIARA 488 (597)
+|-.|.-.=| ..-|.. ..+.-++||+++.|...|+ +-.+.-.+ ..||||||-|+++|-.
T Consensus 430 ~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl----------~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 430 KYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL----------SGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred cchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC----------CchhhhccccccCCcchhHHHHHHH
Confidence 9999865433 222221 1223378888887766655 43344333 5799999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCc--hhHhhHhhh
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFG--FFFSKDLIE 565 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g--~y~~l~~~~ 565 (597)
...+|.+|+|||||..||-++-..+-++|++. +--||+|||..+.+.. |+.+.+.+||++..-..+ .|+++...+
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e 574 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAE 574 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHHHH
Confidence 99999999999999999999999999999987 3479999999999986 999999999999872233 466666543
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-22 Score=207.12 Aligned_cols=204 Identities=19% Similarity=0.305 Sum_probs=139.0
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceE--EEcceeCCCCChHHHhc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVI--KIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I--~idg~di~~~~~~~lr~ 414 (597)
...|.++|++++|+ +.++++|..|++.+|+++||+|++||||||+++.|.+ .+|..-++ +.-. +++.+..+..
T Consensus 73 s~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls---~e~~ps~~~a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS---REIEPSEKQA 148 (614)
T ss_pred cccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc---ccCCCchHHH
Confidence 34699999999996 4679999999999999999999999999999999997 55522222 1111 1122211111
Q ss_pred CcEEEeCCCCCCCccHHhhc-------ccC-CCCChH---HHHHHHHHhcHHHHHHh----c--CCCc-hhhhCCCCCCC
Q psy1502 415 NISIIPQDPVLFSGTLRKNL-------DPF-EKYPDY---VLWTALQEVELKDMIME----G--AGLN-MTVYEGGTNFS 476 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI-------~~~-~~~~~e---~i~~a~~~a~l~~fI~~----l--~Gld-T~vge~G~~LS 476 (597)
+ |....+..+-+--+ .-. ++.+.+ ++++-+...+.+.|-.. + .|+. ......-.+||
T Consensus 149 -v----~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 149 -V----QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred -H----HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 0 11111222222222 111 111111 22332322332222111 2 2333 33445568999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCc-EEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||-|+++||||+.+|++|+|||||.+||.++-..+.+-|.+. ++ |+++++|.-.++-. |-.|+.|++++.+-
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~ 299 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIY 299 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceee
Confidence 99999999999999999999999999999999999999999887 45 89999999999976 99999999999654
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-22 Score=201.51 Aligned_cols=191 Identities=22% Similarity=0.290 Sum_probs=143.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-+-+.||+|.||+.+|.+++++|-|.--+.||||||+|.|||||++||.| +-|..|+..=+. |=+||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence 36789999999999999999999999999999999999999999999999 557889876432 457888
Q ss_pred EeCCCC--CC-CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPV--LF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~--LF-~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
..|..- |- ..|-.|-+.-.-+.+.++.+.++-.-++..- -+|. .-..||||||-|+++|---++.|+|
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sH------AHTi---kikdLSGGQKaRValaeLal~~PDv 725 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASH------AHTI---KIKDLSGGQKARVALAELALGGPDV 725 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhc------cceE---eeeecCCcchHHHHHHHHhcCCCCE
Confidence 888642 11 1233333321113444544444444333211 1221 2368999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcC-EEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSD-KVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D-~Iivl~~G~Ive 552 (597)
|||||||.+||.++-..+-++|++. +-.||||+|.-..|...| ..+|+++-.|-|
T Consensus 726 lILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 726 LILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred EEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 9999999999999999999999987 457999999988886533 456677655554
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=183.82 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=72.4
Q ss_pred CCCchhhhCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH
Q psy1502 462 AGLNMTVYEGGTNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT~vge~G~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti 536 (597)
+|-.|++ ||||||||++||||+. .+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+
T Consensus 88 ~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~ 161 (178)
T cd03239 88 QGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF 161 (178)
T ss_pred CCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 5555555 9999999999999984 79999999999999999999999999988755 48999999999999
Q ss_pred hhcCEEEEEeC
Q psy1502 537 MDSDKVLVMDS 547 (597)
Q Consensus 537 ~~~D~Iivl~~ 547 (597)
..||+++++++
T Consensus 162 ~~adrvi~i~~ 172 (178)
T cd03239 162 ENADKLIGVLF 172 (178)
T ss_pred hhCCeEEEEEE
Confidence 99999999976
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-22 Score=207.39 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=130.4
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
..+|..+|.+.+|. ++..|++-++++..|.+.|+|||+|+|||||++.|.. |.|.+-.+. +..|.--.
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~ve------qE~~g~~t 145 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVE------QEVRGDDT 145 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCch------hheeccch
Confidence 35799999999996 5679999999999999999999999999999999987 333221110 00011000
Q ss_pred EEeCCCCCCCccHHhhcccCC-----CCChHHHHH-HHHHhcHHHHHHhcCCCchhhhCC-CCCCChhHHHHHHHHHHHc
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-----KYPDYVLWT-ALQEVELKDMIMEGAGLNMTVYEG-GTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-----~~~~e~i~~-a~~~a~l~~fI~~l~GldT~vge~-G~~LSGGQrQRIaIARAll 490 (597)
...|+ .+-.+|-+.-+..-+ ..+.+|+.. +++- .|+....-++ -..||||-|=|+|+|||++
T Consensus 146 ~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g----------lGFt~emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 146 EALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAG----------LGFTPEMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred HHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh----------CCCCHHHHhccccccCcchhhHHHHHHHHh
Confidence 11111 112222222221100 002222222 2222 3555444333 3589999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
.+||||+|||||..||..+-..+.+-|..+ ..|+|+|+|+-+.+.. |--|+.+++-++
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999887 3899999999999976 888888887554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-21 Score=196.29 Aligned_cols=180 Identities=23% Similarity=0.350 Sum_probs=135.0
Q ss_pred eeEEEeCCCCccceeeeEEE-----cCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 345 NTNVRYLSGPRVIKNLNITI-----HPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I-----~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
+.-++|++-...+.+..|++ ..||.++++||+|-||||++++|+|. .|++|. ..+ -.|+|
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 44455554444455666665 45688999999999999999999995 578887 222 36889
Q ss_pred EeCCCC-CCCccHHhhcccCC-C-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 419 IPQDPV-LFSGTLRKNLDPFE-K-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 419 V~Q~~~-LF~gTI~eNI~~~~-~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
=||-.. -|+||+++=+.-.. . +.+.-.+ ..|..+..++-.+...-.+||||+.||+|||-||.|++++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~---------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFK---------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhH---------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE
Confidence 999533 48899988774311 1 2221111 1122233445555556678999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
++||||++.||.+..-.+-++|++... ++|.++|-|++-.+.. +||++|.+.
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999998888999988764 6899999999999975 899999975
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=173.21 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=152.0
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC-CCh------
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED-VPL------ 409 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~-~~~------ 409 (597)
...|++.++.|+|+...|++-|+|+++|+|....+||.+|||||||+|+|.|=. .-.|.|.+.|.+--. -++
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 456999999999987779999999999999999999999999999999999954 344999999986432 111
Q ss_pred ----HHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHH--hc-CCCchhhhCCCCCCChhHHHH
Q psy1502 410 ----SKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM--EG-AGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 410 ----~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~--~l-~GldT~vge~G~~LSGGQrQR 482 (597)
.+|++..+.-- +..|- .+++-+++ +.-++-.+|.. .+ +=+|--+--+-..+|-|||.|
T Consensus 91 ~YLGgeW~~~~~~ag-evplq-----------~D~sae~m---ifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAG-EVPLQ-----------GDISAEHM---IFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRR 155 (291)
T ss_pred eEecccccccccccc-ccccc-----------ccccHHHH---HhhccCCChhHhhhhhhheeccceEEEeeccccchhh
Confidence 12222222221 11111 12332222 22222223321 13 445655667778999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+.|+-.||+.=++|+|||.|--||.-....+.+-+++.+ +++|++..||-..-+.. ..+++.+.+|+++.
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999998765 47899999999998875 89999999999998
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-21 Score=193.74 Aligned_cols=186 Identities=19% Similarity=0.152 Sum_probs=131.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccccC---CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV---EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~---~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
+.+.+||+++|+||+|+|||||++.+.+..+. +..+.+-...-+..+..++.+.+. ..++-.+ ++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~-----~~~v~~~------~~- 78 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK-----GEVIAST------FD- 78 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc-----cEEEEec------CC-
Confidence 57889999999999999999999999986643 223333333333355555555540 0001000 11
Q ss_pred CCChHHH---HHHHHHhc-----------HHHHHHhc-CCCchhhhCCCCCCChhH--------HHHHHHHHHHccCCCE
Q psy1502 439 KYPDYVL---WTALQEVE-----------LKDMIMEG-AGLNMTVYEGGTNFSVGQ--------RQLICLARAIVRNNVI 495 (597)
Q Consensus 439 ~~~~e~i---~~a~~~a~-----------l~~fI~~l-~GldT~vge~G~~LSGGQ--------rQRIaIARAll~~p~I 495 (597)
.....++ ..+...|. +-|.+..+ +++++.+|+.|.++|||| +||+++||+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 1111111 11111111 11234455 799999999999999999 9999999999999999
Q ss_pred EEeecCCCCCCHHHHHH-HHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE---ecCchhHhhHh
Q psy1502 496 LVLDEATANVDPKTDLL-IQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---SSFGFFFSKDL 563 (597)
Q Consensus 496 LILDEaTSaLD~~te~~-I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---~~~g~y~~l~~ 563 (597)
.+| ||+++|+.+|.. ++ ++++. .++|.|+++||+++..++|.|.||+.|.+.+ ..++.|+.++.
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWL 227 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCHHHHHHHHH
Confidence 999 999999877764 44 44444 5789999999999999999999999999987 45667777754
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=173.34 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=159.1
Q ss_pred EEEeeEEEe--CC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCceEEEcceeCCCCChHHHh
Q psy1502 342 EFQNTNVRY--LS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-----VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 342 ~f~nVsf~Y--~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-----~~G~I~idg~di~~~~~~~lr 413 (597)
.++|++..+ +. .-.+.+++|++.+.||.-|+||.||||||-++|.|+|... +.-+..+|++|+-.+++...|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 345555544 22 2358999999999999999999999999999999999642 457788999999999998877
Q ss_pred c----CcEEEeCCCCCCCc---c----HHhhcc---cC-C-----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCC
Q psy1502 414 S----NISIIPQDPVLFSG---T----LRKNLD---PF-E-----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473 (597)
Q Consensus 414 ~----~I~~V~Q~~~LF~g---T----I~eNI~---~~-~-----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~ 473 (597)
+ .|++++|+|.-.-+ + +-+||- |. + .....+..+.+.++|+.|--.-+..|- .
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-------~ 157 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-------Y 157 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-------c
Confidence 6 57899999975533 2 346663 21 1 123455667788888854322222232 3
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeE
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~I 550 (597)
.|-.|+-|++.||-|+..+|++||-||||.++|+.|...|...|.++-+ +.|++.|+|++.++. .||+|-||-=|+-
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 4556777999999999999999999999999999999999998877643 679999999999996 5999999999998
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
+|
T Consensus 238 ~E 239 (330)
T COG4170 238 VE 239 (330)
T ss_pred cc
Confidence 88
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-20 Score=187.51 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCe
Q psy1502 474 NFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~ 549 (597)
.|||||+||+++||+++. +|+++||||||++||+.+...+.+.|.+..+++|+|+|||++.....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997654 9999999999999999999999999999888899999999999888999999999875
Q ss_pred E
Q psy1502 550 A 550 (597)
Q Consensus 550 I 550 (597)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-20 Score=182.24 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHh------cCcEEEeCCCCCCCcc-
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLR------SNISIIPQDPVLFSGT- 429 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr------~~I~~V~Q~~~LF~gT- 429 (597)
+++.+++.+| ..+|+|++|||||||+..|.- ++...... . +.-...++. ..|-...+.. +..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~-----r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-G-----RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-c-----cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 3455555444 568999999999999999864 43211100 0 000111110 1111111110 000
Q ss_pred HHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHH----HccCCCEEEeecCCCC
Q psy1502 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARA----IVRNNVILVLDEATAN 504 (597)
Q Consensus 430 I~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARA----ll~~p~ILILDEaTSa 504 (597)
-.+|+.. -.+.+.+.+++..... |.+..+ .+.+.. ..+...||||||||+++|++ ++.+|+++|+||||++
T Consensus 85 ~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 1333331 1234455555555444 444444 444322 45678999999999887755 4689999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCC---cEEEEeccCchhHh-hcC--EEEEEeCCe
Q psy1502 505 VDPKTDLLIQRTIRKKFAD---CTVLTIAHRLHTIM-DSD--KVLVMDSGV 549 (597)
Q Consensus 505 LD~~te~~I~~~l~~~~~~---~TvI~IaHrlsti~-~~D--~Iivl~~G~ 549 (597)
||+.+...+.+.|.+..+. .|+|+|||++..+. .|| +|++|++|+
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999887543 47999999985554 455 889999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=177.24 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=106.4
Q ss_pred ceeeeEEEcCCc-EEEEEcCCCCCHHHHHHHHh-cc-ccCCc-eEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 357 IKNLNITIHPKE-KIGIVGRTGAGKSSLIAAIF-RL-AEVEG-VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 357 L~~isl~I~~G~-~vaIVG~SGsGKSTL~~LL~-~l-~~~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
.-++||++++|+ .++|+||+|||||||++.|. .. .+..| .+-... ...++|++|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------~~~~~~~~~~~~~l------ 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------GSSLPVFENIFADI------ 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------cccCcCccEEEEec------
Confidence 457899999996 69999999999999999987 21 12222 110000 01233433331100
Q ss_pred hcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~ 512 (597)
|.+..+.++-..+|+|+||+..|++++ .+|+++++||||+++|+++...
T Consensus 80 ------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~ 128 (200)
T cd03280 80 ------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAA 128 (200)
T ss_pred ------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHH
Confidence 111112233358999999999999985 8999999999999999999888
Q ss_pred HHH-HHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 513 IQR-TIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 513 I~~-~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.. .++.+. .+.|+|++||.....+.||++++|++|+++.
T Consensus 129 i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 129 LAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEF 170 (200)
T ss_pred HHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEE
Confidence 754 455544 3789999999977778899999999999976
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-19 Score=205.88 Aligned_cols=193 Identities=21% Similarity=0.294 Sum_probs=159.0
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc----CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-cc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GT 429 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~----~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gT 429 (597)
++|+|+|.-++||+.+-+.||.|||||||++.|.|-.+ ..|+|..||.+.++... ++.++|.+|+..-|. .|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 69999999999999999999999999999999998542 46899999999999887 889999999998886 69
Q ss_pred HHhhcccC-------CCCChHHHHHHHHHhcHHHHHHh---c-CCCchhhhCCC-CCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 430 LRKNLDPF-------EKYPDYVLWTALQEVELKDMIME---G-AGLNMTVYEGG-TNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 430 I~eNI~~~-------~~~~~e~i~~a~~~a~l~~fI~~---l-~GldT~vge~G-~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
+||-|.+. ..++ ++.+--+.+...|.+.+ + ...||.||.+. ...|||||.|+++|-++..+|+++.
T Consensus 206 VreTldFa~rck~~~~r~~--~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYD--EVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred EeehhhHHHhccCCccccc--cccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 99999742 1122 11111122224454443 4 67899999774 5799999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCch--hHhhcCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH--TIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrls--ti~~~D~Iivl~~G~Ive 552 (597)
+||+|-+||+.|.-.+.++|+++.. +.|.++.=|..+ +..-.|.|++|.+|+++-
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy 342 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY 342 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE
Confidence 9999999999999999999988754 677777777654 456689999999999986
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=162.60 Aligned_cols=134 Identities=20% Similarity=0.300 Sum_probs=99.1
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHHhhcccCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
++.+.++..+.|+||+||||||+++.+.-. ...+|.+.- +.+. +.+ .+|+...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc----------cCCCcceeeEEEE------------
Confidence 445556679999999999999999997643 344444432 0000 111 122222111
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHH
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~ 514 (597)
+... ..||+||+||+++||+|.. +|+++|||||++++|++....+.
T Consensus 72 -------------------i~~~-----------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~ 121 (162)
T cd03227 72 -------------------IFTR-----------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA 121 (162)
T ss_pred -------------------ehhe-----------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0000 1199999999999999987 78999999999999999999999
Q ss_pred HHHHHhcC-CcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 515 RTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 515 ~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
+.+.+... ++|+|++||++.....+|+++.|+.
T Consensus 122 ~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 122 EAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99987654 5899999999999999999999975
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=176.10 Aligned_cols=177 Identities=25% Similarity=0.400 Sum_probs=136.1
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--------c-cCCceEEEcceeCCCCChHHHhcCcEEEeC--CC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--------A-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ--DP 423 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--------~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q--~~ 423 (597)
.+|+|+||+|+||+.++|||+|||||||++.+|+|. | |++|.|.+--..+ -+.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 589999999999999999999999999999999995 3 5689887632222 123443 33
Q ss_pred CCCCccHHhhcccCCCCCh-HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 424 VLFSGTLRKNLDPFEKYPD-YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 424 ~LF~gTI~eNI~~~~~~~~-e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
.+=.-||.|.+.- ...| ..-.+.+..+++.|-+-- - ..-..||-|||-|..||+++...|.+++.||.-
T Consensus 466 ~f~~~tilehl~s--~tGD~~~AveILnraGlsDAvly----R----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 466 EFGEVTILEHLRS--KTGDLNAAVEILNRAGLSDAVLY----R----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred ccCchhHHHHHhh--ccCchhHHHHHHHhhccchhhhh----h----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 3333477777642 2222 223466777777553321 1 123479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
|.||+.|..+|...|.++. .+.|+++||||.+.+.. -|.++.+-=|+...
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 9999999999999999887 68899999999998875 49999887776543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-18 Score=173.16 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=126.5
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEE-----------EcceeCCCCChHHH
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIK-----------IDDIDTEDVPLSKL 412 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~-----------idg~di~~~~~~~l 412 (597)
++.-+|..+-..|-++- ..++|+.+||+|++|-||||-+++|.| +.|.=|+-- +-|..+.+|=..-+
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 46778843322343332 256999999999999999999999999 445434320 11111111100000
Q ss_pred ----h--cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 413 ----R--SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 413 ----r--~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
| .++-||.-=|-.+.|++.|=+.- +-+.-..++.++. -+++..+..+-..||||+-||+|||
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-----------~de~g~~devve~-l~L~nvl~r~v~~LSGGELQr~aIa 225 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKK-----------VDERGKFDEVVER-LGLENVLDRDVSELSGGELQRVAIA 225 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHh-----------hhhcCcHHHHHHH-hcchhhhhhhhhhcCchHHHHHHHH
Confidence 0 11222222333444444443321 1111123344444 3566677777789999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
-|++|+++++++|||||-||....-.+-+.|+++.+ +++||+|-|+|..+.. +|-|-++-.
T Consensus 226 a~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 226 AALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999999999998888889999887 6999999999999975 798887754
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-18 Score=165.64 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=111.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHH
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~ 431 (597)
.+.+.+|+++++++|+.++|.||+||||||+++.+.-. .+..++| +||.+...+. +.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe--cc
Confidence 34689999999999999999999999999999999721 2344555 7777642221 11
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecC---CCCCC
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRNNVILVLDEA---TANVD 506 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~p~ILILDEa---TSaLD 506 (597)
+.|. ... |++-.. ..++|.|++|+..+|+++ +.+|+++||||| |+++|
T Consensus 74 ~~il--------------~~~----------~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 74 DCIL--------------ARV----------GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ceeE--------------eee----------ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 1110 011 111111 357999999999999999 999999999999 99999
Q ss_pred HHHHHHH-HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 507 PKTDLLI-QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 507 ~~te~~I-~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+...... .+.+.+ ..++|+|++||..+....||++..+++|++..
T Consensus 127 ~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 127 GFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTA 172 (222)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEE
Confidence 9876543 355544 24789999999755556699999999999976
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=165.28 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=113.9
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-----------c------C-----------------------Cc--
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----------E------V-----------------------EG-- 395 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-----------~------~-----------------------~G-- 395 (597)
++.++++++| ..+|+|||||||||++..|.-+. + + +|
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4566777775 68899999999999998764210 0 0 01
Q ss_pred eEEEcceeCCC-CChHHHhcCcEEEeCCCCCCCccHHhhcccCCC---CChHHHHH---HHHHh--cHHHHHHhc--CCC
Q psy1502 396 VIKIDDIDTED-VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK---YPDYVLWT---ALQEV--ELKDMIMEG--AGL 464 (597)
Q Consensus 396 ~I~idg~di~~-~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~---~~~e~i~~---a~~~a--~l~~fI~~l--~Gl 464 (597)
.+.+||..++. -+...+...|.+.|++..|+.++-.+-..+.+. -.+.+..+ ..+++ +..+....+ +-+
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~l 171 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDDL 171 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhhe
Confidence 33455655543 112223345666777777875443333222110 01122111 11111 011111122 222
Q ss_pred chhhh--CCCCCCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q psy1502 465 NMTVY--EGGTNFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533 (597)
Q Consensus 465 dT~vg--e~G~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 533 (597)
.-.+. +.-.-+|+||+|+++|||+|. .+|+++||||||++||+.....+.+.+.+.. .+++++|..
T Consensus 172 ~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~ 248 (270)
T cd03242 172 LFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDL 248 (270)
T ss_pred EEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCc
Confidence 22222 222347999999999999974 8999999999999999999999999998752 455566655
Q ss_pred hhHhh-c---CEEEEEeCCeE
Q psy1502 534 HTIMD-S---DKVLVMDSGVA 550 (597)
Q Consensus 534 sti~~-~---D~Iivl~~G~I 550 (597)
..+.+ | ++|+.+++|+|
T Consensus 249 ~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 249 ADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccchhccCccEEEEeCcEE
Confidence 55544 5 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=174.57 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=82.7
Q ss_pred CCCch-hhhCCCCCCChhHHHHHHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 462 AGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 462 ~GldT-~vge~G~~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
-|+.. .+|.....||||+.|||-+|.-|.|.+ -++||||||-+|-.+--+.+++.|.++. +|.|||+|-|.|..|
T Consensus 809 VGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI 888 (935)
T COG0178 809 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI 888 (935)
T ss_pred cCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE
Confidence 36655 479999999999999999999999988 8999999999999999999999998876 488999999999999
Q ss_pred hhcCEEEEE------eCCeEEE
Q psy1502 537 MDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 537 ~~~D~Iivl------~~G~Ive 552 (597)
+.||+|+-| +.|+|+.
T Consensus 889 k~AD~IIDLGPeGG~~GG~iva 910 (935)
T COG0178 889 KTADWIIDLGPEGGDGGGEIVA 910 (935)
T ss_pred eecCEEEEcCCCCCCCCceEEE
Confidence 999999999 5678887
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-18 Score=144.62 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=71.8
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
.++|++++|++++|+.++|+||||||||||+++++ +|.+.++|.|+..++.+..++.++++||+ +|.+|||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 46899999999999999999999999999999987 89999999999999999999999999999 999999999
Q ss_pred ccc
Q psy1502 434 LDP 436 (597)
Q Consensus 434 I~~ 436 (597)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 975
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=192.06 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCch-hhhCCCCCCChhHHHHHHHHHHHccC---CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh
Q psy1502 463 GLNM-TVYEGGTNFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM 537 (597)
Q Consensus 463 GldT-~vge~G~~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~ 537 (597)
|+.. .+|+.-..|||||.|||-||.-|.++ +.++||||||.+|++..-+.+.+.|+++. .+.|+|+|.|++..++
T Consensus 1687 GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~ 1766 (1809)
T PRK00635 1687 GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLK 1766 (1809)
T ss_pred CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 5544 47999999999999999999999986 78999999999999999999999998875 4799999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|+-| +.|+|+.
T Consensus 1767 ~aD~iidlgp~gG~~GG~iva 1787 (1809)
T PRK00635 1767 QADYLIEMGPGSGKTGGKILF 1787 (1809)
T ss_pred hCCEEEEcCCCcccCCCEEEE
Confidence 99999999 5578887
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-17 Score=165.52 Aligned_cols=220 Identities=21% Similarity=0.256 Sum_probs=151.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-c-cc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-R-LA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~-l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+|.++|.+.+- .++..+-|-||.|-.|...|+|||+|-|||||++-|. | |- |+.=.+++
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLl----------------- 325 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLL----------------- 325 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEe-----------------
Confidence 47888877765 3566889999999999999999999999999999997 4 32 54433333
Q ss_pred EEEeCCCCCCCccHHhhc---------------------ccCCCCChHHHHHH---HHHhcHHH---HHHh-c--CCCch
Q psy1502 417 SIIPQDPVLFSGTLRKNL---------------------DPFEKYPDYVLWTA---LQEVELKD---MIME-G--AGLNM 466 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI---------------------~~~~~~~~e~i~~a---~~~a~l~~---fI~~-l--~GldT 466 (597)
+.|+..-=+.|--+-+ .-|..--.|++.++ ++..+++. -... + -|++-
T Consensus 326 --CEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk 403 (807)
T KOG0066|consen 326 --CEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK 403 (807)
T ss_pred --eeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh
Confidence 3333322222111111 01111111222222 22222211 0111 2 47777
Q ss_pred hhhCCC-CCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEE
Q psy1502 467 TVYEGG-TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLV 544 (597)
Q Consensus 467 ~vge~G-~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iiv 544 (597)
.+-++. ..+|||-|-|+++||||+-.|-+|.|||||..||-..--.+-.-|+.+ .+|.++|+|.-..+.+ |..|+.
T Consensus 404 EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 404 EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhh
Confidence 777775 589999999999999999999999999999999998877776677766 5899999999999986 999999
Q ss_pred EeCCeEEE--ecCchhHhhHhhhcccchHHHHHHHhHhH
Q psy1502 545 MDSGVAVV--SSFGFFFSKDLIEGTVSAKVLSSRKRREK 581 (597)
Q Consensus 545 l~~G~Ive--~~~g~y~~l~~~~~~~~~~~~~~~~~~~~ 581 (597)
||+-++-- .....|++||.+...+..+.+.++.++-+
T Consensus 482 LD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~Lk 520 (807)
T KOG0066|consen 482 LDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLK 520 (807)
T ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99977654 33456888888776666666555544433
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=155.78 Aligned_cols=139 Identities=18% Similarity=0.141 Sum_probs=94.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC-CccHH
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF-~gTI~ 431 (597)
+++|++|++|+. |+.++|+||||||||||++.|.+... +..+|.++.. + ++++|...+| ..|++
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a-------~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCA-------S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEec-------C--ccCcccceEEEeccch
Confidence 345888887665 79999999999999999999987431 1124444321 1 2566655566 46999
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
||+..+.....++..+ +.+.++.. + +++|+++||||||+++|+.+..
T Consensus 78 d~l~~~~s~~~~e~~~------~~~iL~~~-~--------------------------~~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 78 DDLRDGISYFYAELRR------LKEIVEKA-K--------------------------KGEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred hccccccChHHHHHHH------HHHHHHhc-c--------------------------CCCCeEEEEecccCCCCHHHHH
Confidence 9998754332333222 22222221 1 0799999999999999999877
Q ss_pred HHHH-HHHHhc-CCcEEEEeccCchhHhhc
Q psy1502 512 LIQR-TIRKKF-ADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 512 ~I~~-~l~~~~-~~~TvI~IaHrlsti~~~ 539 (597)
.+.. .++.+. ++.|+|++||++..+...
T Consensus 125 ~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 125 AASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 6644 344443 368999999999888654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-16 Score=153.89 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=98.6
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-c-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRL-A-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
|+++.+|++++|+||+|||||||++.|.+. + ...|...- ..+..+++..|....|+ ..++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~----- 84 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDS----- 84 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccc-----
Confidence 455668999999999999999999999853 3 23343211 01233444333222111 0011
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHH-H
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT-I 517 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~-l 517 (597)
+.++-..++++++| +..+-+.+.+|+++||||||+++|+.....+... +
T Consensus 85 -----------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll 134 (202)
T cd03243 85 -----------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVL 134 (202)
T ss_pred -----------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11111345666665 6666788899999999999999999877766544 3
Q ss_pred HHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 518 RKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 518 ~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+.+. .+.|+|++||+...+..||++..++.|++.+
T Consensus 135 ~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~ 170 (202)
T cd03243 135 EHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEE 170 (202)
T ss_pred HHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEE
Confidence 4332 3789999999999999999999999999887
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-16 Score=189.59 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=103.2
Q ss_pred CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHH------HHHHHHHHccCCCEEE
Q psy1502 425 LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQ------LICLARAIVRNNVILV 497 (597)
Q Consensus 425 LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQ------RIaIARAll~~p~ILI 497 (597)
.|+||+++||.+..+++++ +.|++.+++++|+..+ .| ||.++.+| +||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999995566666 7999999999999998 89 99999887 99999999 9999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhc------CCcEEEEeccCchhHhh------cCEEEEE
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKF------ADCTVLTIAHRLHTIMD------SDKVLVM 545 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~------~~~TvI~IaHrlsti~~------~D~Iivl 545 (597)
|||||++||+.+...+.+.|.++. .+.|+|+|||++..+.. ||+.|-+
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999999887763 36799999999999874 4555544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-16 Score=178.78 Aligned_cols=91 Identities=24% Similarity=0.326 Sum_probs=82.8
Q ss_pred CCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh
Q psy1502 462 AGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM 537 (597)
Q Consensus 462 ~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~ 537 (597)
-|++.. .+..-..|||||+|||+|||||..+| ++|||||||++||+.....+.+.|+++.. +.|+|+|+|++..+.
T Consensus 476 vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~ 555 (943)
T PRK00349 476 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR 555 (943)
T ss_pred cccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 466543 56777899999999999999999997 99999999999999999999999998754 789999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|++| ++|+|+.
T Consensus 556 ~aD~vi~LgpgaG~~~G~iv~ 576 (943)
T PRK00349 556 AADYIVDIGPGAGVHGGEVVA 576 (943)
T ss_pred hCCEEEEeccccCCCCCEEee
Confidence 99999999 9999987
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=177.07 Aligned_cols=90 Identities=27% Similarity=0.352 Sum_probs=82.2
Q ss_pred CCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh
Q psy1502 463 GLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD 538 (597)
Q Consensus 463 GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~ 538 (597)
|++.. ++.....|||||+||++|||||..+| ++|||||||++||+.+...+.+.|+++.. +.|+|+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 55543 57778899999999999999999986 89999999999999999999999988754 7899999999999999
Q ss_pred cCEEEEE------eCCeEEE
Q psy1502 539 SDKVLVM------DSGVAVV 552 (597)
Q Consensus 539 ~D~Iivl------~~G~Ive 552 (597)
||+|++| ++|+|+.
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~ 574 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVA 574 (924)
T ss_pred CCEEEEecccccCCCCEEee
Confidence 9999999 9999987
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-15 Score=147.79 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-hHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHH
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i 445 (597)
+.++|+||+|||||||++.|+|+. +.+|+|.++|.++..++ ...+...++++||+..--..++.+|-. ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence 689999999999999999999987 57899999999998775 567778889999975322234444411 000
Q ss_pred HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy1502 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525 (597)
Q Consensus 446 ~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~T 525 (597)
| -..++|+ .+|+++|+|||++ ...+...++.+..+.|
T Consensus 185 -----------------~------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~ 221 (270)
T TIGR02858 185 -----------------G------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVS 221 (270)
T ss_pred -----------------H------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCE
Confidence 0 1455666 4999999999974 2234444444446899
Q ss_pred EEEeccCchh--H------------hhcCEEEEEeCCe
Q psy1502 526 VLTIAHRLHT--I------------MDSDKVLVMDSGV 549 (597)
Q Consensus 526 vI~IaHrlst--i------------~~~D~Iivl~~G~ 549 (597)
+|+++|..+. + .-+||+++|++|+
T Consensus 222 vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 222 IIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred EEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 9999997655 3 3379999999764
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-14 Score=147.67 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh---cC
Q psy1502 473 TNFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD---SD 540 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~---~D 540 (597)
..+|+||+|+++||+++. ++||||+||||+|.||+.....+.+.+.+. ++++++.+|.+..+.. ++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 899999999999999999999999888754 4688999998876644 46
Q ss_pred EEEEEeCCeE
Q psy1502 541 KVLVMDSGVA 550 (597)
Q Consensus 541 ~Iivl~~G~I 550 (597)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-14 Score=139.21 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=97.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHH
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~ 431 (597)
++++.+|++|++++|+.++|.||||+||||+++.+.++. +..++| +||-.. ..-++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCCCcchhh--cCccCh
Confidence 456899999999999999999999999999999998763 122222 232221 122455
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
|||... -+.+..+.++...+|+|++|+. .+-++..+|+++|||||++++|+....
T Consensus 73 d~I~~~------------------------~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred hheeEe------------------------cCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 565321 0111123344568999999764 445578899999999999999997644
Q ss_pred HHHHH-HHHhc-CCcEEEEeccCchhHhhcC
Q psy1502 512 LIQRT-IRKKF-ADCTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 512 ~I~~~-l~~~~-~~~TvI~IaHrlsti~~~D 540 (597)
.+..+ ++.+. .++|+|++||..+.+..++
T Consensus 128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 128 AISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 44332 33332 3789999999999887543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-14 Score=139.02 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=60.0
Q ss_pred CCChhHHHHHHHH----HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 474 NFSVGQRQLICLA----RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 474 ~LSGGQrQRIaIA----RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
.||||||-+++|| ..-+.++|++||||+.++||......+.+.|.+..+++-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999997 33467899999999999999999999999999998889999999999999999999876
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-14 Score=162.90 Aligned_cols=88 Identities=26% Similarity=0.361 Sum_probs=80.5
Q ss_pred CCCchhhhCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEeecCC-CCCCHHHHHHHHHHHHHhcCCc
Q psy1502 462 AGLNMTVYEGG------TNFSVGQRQLICLARAIV----------RNNVILVLDEAT-ANVDPKTDLLIQRTIRKKFADC 524 (597)
Q Consensus 462 ~GldT~vge~G------~~LSGGQrQRIaIARAll----------~~p~ILILDEaT-SaLD~~te~~I~~~l~~~~~~~ 524 (597)
+++++.+++.| ..||||||||++|||||+ .+|++||||||| ++||+.+...+.+.|.++ ++.
T Consensus 450 ~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~ 528 (562)
T PHA02562 450 EEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDT 528 (562)
T ss_pred hhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCC
Confidence 67888898888 789999999999999887 599999999998 789999999999999998 789
Q ss_pred EEEEeccCchhHhhcCEEEEEeC-CeE
Q psy1502 525 TVLTIAHRLHTIMDSDKVLVMDS-GVA 550 (597)
Q Consensus 525 TvI~IaHrlsti~~~D~Iivl~~-G~I 550 (597)
|+|+|||+......||++++|++ |+.
T Consensus 529 ~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 529 NVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred eEEEEECchhchhhhhcEEEEEEECCe
Confidence 99999999998899999999987 554
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=137.25 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=98.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTL 430 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI 430 (597)
+.+.+|++|++++ +.++|+||+||||||+++.+.+.. . ..|.. ++ ..+..+++++| +|. -+.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~---------vp--~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF---------VP--ASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe---------ec--cccceecceee---EeccCCc
Confidence 4588999999887 999999999999999999998743 2 22321 11 11346677754 232 244
Q ss_pred HhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecC---CCCC
Q psy1502 431 RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRNNVILVLDEA---TANV 505 (597)
Q Consensus 431 ~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~p~ILILDEa---TSaL 505 (597)
.||+..+. |-=...+..+++++ ..+|+++||||| |+++
T Consensus 83 ~~~ls~g~-------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 83 SDDLAGGR-------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hhhhccCc-------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 44443321 11111223345544 469999999999 9999
Q ss_pred CHHH-HHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 506 DPKT-DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 506 D~~t-e~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|... ...+.+.+.+. .++|+|++||.......+|++-.+++|++..
T Consensus 126 D~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~ 172 (216)
T cd03284 126 DGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAV 172 (216)
T ss_pred HHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEE
Confidence 9865 34555666543 3789999999987777788887778888765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=139.49 Aligned_cols=180 Identities=21% Similarity=0.305 Sum_probs=136.2
Q ss_pred EEeCCCCccceeeeEEEcCCc-----EEEEEcCCCCCHHHHHHHHhccc-cC-CceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 348 VRYLSGPRVIKNLNITIHPKE-----KIGIVGRTGAGKSSLIAAIFRLA-EV-EGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 348 f~Y~~~~~vL~~isl~I~~G~-----~vaIVG~SGsGKSTL~~LL~~l~-~~-~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
|+||+.+.-+-+..|.|+.|+ .+-..|.+|-||||++++++|.. |+ .|+|-. =.|+|=|
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~--------------lnVSykp 408 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV--------------LNVSYKP 408 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------------cceeccc
Confidence 678877778889999999985 57888999999999999999954 54 466543 2577888
Q ss_pred CCCC-CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 421 QDPV-LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 421 Q~~~-LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|... =|.+|+|+=+. +.++.+-..-++...+.++-..+..++..-.+||||+.||+|||=+|=+.+++++.|
T Consensus 409 qkispK~~~tvR~ll~-------~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliD 481 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH-------TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLID 481 (592)
T ss_pred cccCccccchHHHHHH-------HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec
Confidence 8644 56788887652 334444333333333344433455567777899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHh--cCCcEEEEeccCchhHh-hcCEEEEEeCC
Q psy1502 500 EATANVDPKTDLLIQRTIRKK--FADCTVLTIAHRLHTIM-DSDKVLVMDSG 548 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~--~~~~TvI~IaHrlsti~-~~D~Iivl~~G 548 (597)
||.+-||++.....-+.+++. ..++|-.+|-|.+-... -|||++|.+.-
T Consensus 482 EpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 482 EPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred CchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 999999998766555555553 35789999999987775 49999999863
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-13 Score=148.64 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 473 TNFSVGQRQLICLARAIVRN----NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~----p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999885 69999999999999999999999999988899999999999999999999999886
Q ss_pred e
Q psy1502 549 V 549 (597)
Q Consensus 549 ~ 549 (597)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=124.70 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=92.6
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC--ccH
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS--GTL 430 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~--gTI 430 (597)
.|-+|+++.=..+.+++|+||+|+|||||++.+... ....|...... .-.++|..|...-++ +|+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 455666664222389999999999999999999842 34566655421 235777777643222 223
Q ss_pred HhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHH
Q psy1502 431 RKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510 (597)
Q Consensus 431 ~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te 510 (597)
.+++. .| --+-||+++|+++..+|+++|||||++++|+...
T Consensus 86 ~~~~S--------------------~f-------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 86 SSGQS--------------------AF-------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred hhccc--------------------hH-------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 22221 11 1234999999999999999999999999999754
Q ss_pred HHH-HHHHHHhcC----CcEEEEeccCchhHhhcC
Q psy1502 511 LLI-QRTIRKKFA----DCTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 511 ~~I-~~~l~~~~~----~~TvI~IaHrlsti~~~D 540 (597)
..+ ...++.+.+ ..++|++||.++.+....
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 434 445555542 248999999999987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=144.35 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=72.0
Q ss_pred CCCChhHHHHHHHHHHHcc----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 473 TNFSVGQRQLICLARAIVR----NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
..+||||+||++|||+++. +|+++||||||++||..+...+.+.|.++.+++|+|+|||.+..+..||++++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3689999999999999996 689999999999999999999999999998889999999999999999999999875
Q ss_pred e
Q psy1502 549 V 549 (597)
Q Consensus 549 ~ 549 (597)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=132.05 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=119.5
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeC---CC-----CChHHHhcCcEEEeCCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDT---ED-----VPLSKLRSNISIIPQDP 423 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di---~~-----~~~~~lr~~I~~V~Q~~ 423 (597)
+..+++++ |++++|++++|+|+||+|||||+++|+++++ +.|.|.+.|.+- .+ ++...+++.|.+|++..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 9999999999999999999999999999884 679999955544 43 34455778888887431
Q ss_pred CCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH----HccCCCEEEee
Q psy1502 424 VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA----IVRNNVILVLD 499 (597)
Q Consensus 424 ~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA----ll~~p~ILILD 499 (597)
+..-+++..+.-..-+.|+... .|.|-.+--+ +++ |.|-|-- .+..||
T Consensus 224 ---------------~~~~~r~~~~~~a~~iAEyfr~-~g~~Vll~~D--slt-----r~A~A~rEisl~~ge~P----- 275 (438)
T PRK07721 224 ---------------QPALMRIKGAYTATAIAEYFRD-QGLNVMLMMD--SVT-----RVAMAQREIGLAVGEPP----- 275 (438)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEe--ChH-----HHHHHHHHHHHhcCCCC-----
Confidence 1122333333333334455554 4666544321 111 2222211 134555
Q ss_pred cCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 500 EATANVDPKTDLLIQRTIRKKF---ADC-----TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~---~~~-----TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+|+++|+..-..+.+.+++.. ++. |+++.+|+++. .-||++.++.||+|+.
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVL 334 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEE
Confidence 789999999999998888875 364 99999999995 7799999999999997
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-13 Score=130.11 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCC-----CCCCHHHHHHHHHHHHHhc
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEAT-----ANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaT-----SaLD~~te~~I~~~l~~~~ 521 (597)
-|+|++.|||+++.+|++++||||| ++||+.+...+.+.+.++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998863
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-12 Score=123.16 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=69.5
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeec--CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDE--ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDE--aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
....+||+++-++.+++..+++|+++++|| |+..+|....+.+.+.++ .++++|+++|.-..-..+|+|..+.+|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCc
Confidence 345699999999999999999999999999 555666555555555552 378999999996666779999999999
Q ss_pred eEEE----ecCchhHhhH
Q psy1502 549 VAVV----SSFGFFFSKD 562 (597)
Q Consensus 549 ~Ive----~~~g~y~~l~ 562 (597)
+|.+ +++..|....
T Consensus 152 ~i~~~~~~~r~~~~~~~~ 169 (174)
T PRK13695 152 RVYELTPENRDSLPFEIL 169 (174)
T ss_pred EEEEEcchhhhhHHHHHH
Confidence 9998 4555555443
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=139.23 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=97.1
Q ss_pred cEEEEeeEEEeCCCCcccee-----eeEEEcCC-cEEEEEcCCCCCHHHHHHHHhcc-c-cCCceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKN-----LNITIHPK-EKIGIVGRTGAGKSSLIAAIFRL-A-EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~-----isl~I~~G-~~vaIVG~SGsGKSTL~~LL~~l-~-~~~G~I~idg~di~~~~~~~ 411 (597)
.+.++++.. |++++ +|+++.++ +.++|+||+|+|||||++.+.+. + +..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 477777654 33433 68888877 99999999999999999999986 2 33331
Q ss_pred HhcCcEEEeCCCC-CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 412 LRSNISIIPQDPV-LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 412 lr~~I~~V~Q~~~-LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+||.... .+ .+.+++- ....+++ .+.++-..||+|++|+..|++++
T Consensus 354 ------~Vpa~~~~~~--~~~d~i~--~~i~~~~----------------------si~~~LStfS~~m~~~~~il~~~- 400 (771)
T TIGR01069 354 ------PIPANEHSEI--PYFEEIF--ADIGDEQ----------------------SIEQNLSTFSGHMKNISAILSKT- 400 (771)
T ss_pred ------CccCCccccc--cchhhee--eecChHh----------------------HHhhhhhHHHHHHHHHHHHHHhc-
Confidence 4444321 11 1122221 1111111 01223356999999999999987
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEeccCchhH
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQR-TIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~-~l~~~~-~~~TvI~IaHrlsti 536 (597)
.+|+++|||||++++|+..-..+.. .+..+. .++++|++||....-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 7899999999999999998887744 344432 478999999997653
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-12 Score=121.07 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred hCCCCCCChhHHHHHHHHHHHcc--CCCEEEeecCCCCCCHHHHHHHHHH-HHHhc--CCcEEEEeccCchhHhhcCEEE
Q psy1502 469 YEGGTNFSVGQRQLICLARAIVR--NNVILVLDEATANVDPKTDLLIQRT-IRKKF--ADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 469 ge~G~~LSGGQrQRIaIARAll~--~p~ILILDEaTSaLD~~te~~I~~~-l~~~~--~~~TvI~IaHrlsti~~~D~Ii 543 (597)
.++-..||+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .++++|++||..+..+.||+--
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~ 132 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHP 132 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCc
Confidence 3444678888887 4555555 9999999999999999977666444 45443 2689999999998777787533
Q ss_pred EEeCCe
Q psy1502 544 VMDSGV 549 (597)
Q Consensus 544 vl~~G~ 549 (597)
-+++++
T Consensus 133 ~v~~~~ 138 (185)
T smart00534 133 GVRNLH 138 (185)
T ss_pred cceEEE
Confidence 344443
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=121.41 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEE
Q psy1502 473 TNFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
.-+|+||++++++|+.|. .+|||++||||||.||......+.+.|.... .++|.-+ +.-..||+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcC---CCCCCCceEE
Confidence 467999999999999998 8999999999999999999999988886542 3444433 3345699999
Q ss_pred EEeCCeEE
Q psy1502 544 VMDSGVAV 551 (597)
Q Consensus 544 vl~~G~Iv 551 (597)
.+++|++.
T Consensus 337 ~~~~~~~~ 344 (349)
T PRK14079 337 RIEAGVFT 344 (349)
T ss_pred EEeccEec
Confidence 99999874
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=115.09 Aligned_cols=137 Identities=14% Similarity=0.040 Sum_probs=81.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+.+.+|++|.+++|++++|.||+|+||||+++.+.+.. +..|...... .-.++|.+|=- ..-.-.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-----------~~~~~~~~~i~--~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-----------SATLSIFDSVL--TRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-----------ceEEeccceEE--EEecCc
Confidence 56899999999999999999999999999999999853 5677754321 11233322211 011112
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC---HH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD---PK 508 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD---~~ 508 (597)
|++.-+...=..|+.+ ++-.=.-..+|+++|||||.++.| ..
T Consensus 85 d~~~~~~StF~~e~~~-----------------------------------~~~il~~~~~~sLvllDE~~~gT~~~d~~ 129 (222)
T cd03287 85 DSIQHGMSTFMVELSE-----------------------------------TSHILSNCTSRSLVILDELGRGTSTHDGI 129 (222)
T ss_pred cccccccchHHHHHHH-----------------------------------HHHHHHhCCCCeEEEEccCCCCCChhhHH
Confidence 2221111000112221 111111234799999999855555 44
Q ss_pred H-HHHHHHHHHHhcCCcEEEEeccCchhHhhc
Q psy1502 509 T-DLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 509 t-e~~I~~~l~~~~~~~TvI~IaHrlsti~~~ 539 (597)
+ ...+.+.+.+. +++|+|++||.++.....
T Consensus 130 ~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 130 AIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4 23455555443 478999999998876543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-11 Score=139.66 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=67.1
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC---C-cEEEEeccCchhHhhcC
Q psy1502 471 GGTNFSVGQRQLICL------ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---D-CTVLTIAHRLHTIMDSD 540 (597)
Q Consensus 471 ~G~~LSGGQrQRIaI------ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~---~-~TvI~IaHrlsti~~~D 540 (597)
....|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.|..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999999998888864322 2 48999999999999999
Q ss_pred EEEEEe
Q psy1502 541 KVLVMD 546 (597)
Q Consensus 541 ~Iivl~ 546 (597)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=107.06 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=63.0
Q ss_pred CCCchhhhCCCCCCChhHHH------HHHHHHHHccCCCEEEeecCCCCCC---HHHHHHHHHHHHHhc-CCcEEEEecc
Q psy1502 462 AGLNMTVYEGGTNFSVGQRQ------LICLARAIVRNNVILVLDEATANVD---PKTDLLIQRTIRKKF-ADCTVLTIAH 531 (597)
Q Consensus 462 ~GldT~vge~G~~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD---~~te~~I~~~l~~~~-~~~TvI~IaH 531 (597)
.|....+......+|+||+| ....+.+.-.+|+++++||+|+.+| ......+.+.+..+. .+.|+|+++|
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~ 138 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSE 138 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 34444555666788999999 4444444556999999999999999 666666766665543 3789999999
Q ss_pred Cchh---------Hh-hcCEEEEEe
Q psy1502 532 RLHT---------IM-DSDKVLVMD 546 (597)
Q Consensus 532 rlst---------i~-~~D~Iivl~ 546 (597)
.... +. -||.|+.|+
T Consensus 139 ~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 139 QSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCCCcccCcCceeEeeeEEEEEE
Confidence 8764 43 489999987
|
A related protein is found in archaea. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-10 Score=137.35 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEE
Q psy1502 473 TNFSVGQRQ------LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 473 ~~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl 545 (597)
..|||||+| |+||||++..+|+++||||||++||+.....+.+.|..+.. +.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 56677789999999999999999999999999999987654 57999999999988889999999
Q ss_pred eC
Q psy1502 546 DS 547 (597)
Q Consensus 546 ~~ 547 (597)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-10 Score=119.82 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccce-----------eeeEEEcCCcEEEEE
Q psy1502 305 HMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIK-----------NLNITIHPKEKIGIV 373 (597)
Q Consensus 305 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~-----------~isl~I~~G~~vaIV 373 (597)
...+.+|++++++.++.... +++ ...+.|+|+||+|.||+++.+|+ |+++.|.+||+++||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~------~~e--~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD------DPE--KAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred ccccHhHHHHHhCCCccCCC------Ccc--ccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 34578999999987654211 111 23567999999999998778997 999999999999999
Q ss_pred cCCCCCHHHHHHHHhccccC---CceEEEcceeCCCCChHHHhcCc
Q psy1502 374 GRTGAGKSSLIAAIFRLAEV---EGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 374 G~SGsGKSTL~~LL~~l~~~---~G~I~idg~di~~~~~~~lr~~I 416 (597)
||+|||||||+++|.+.+.. +..+.+--.+-+..+..++.+.+
T Consensus 175 G~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred CCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 99999999999999997642 23343333333334444444443
|
Members of this family differ in the specificity of RNA binding. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=107.25 Aligned_cols=156 Identities=10% Similarity=0.119 Sum_probs=88.5
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHH-HHHHhccccCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL-IAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL-~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+..++++..++. .+++|+.+.|+|++||||||| .+++.++... | ..+.|+
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g------------------~~~~yi 58 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-G------------------YSVSYV 58 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-C------------------CcEEEE
Confidence 556666655543 289999999999999999999 5888886532 2 122333
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcH--HHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc----cCC
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVEL--KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV----RNN 493 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l--~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll----~~p 493 (597)
+.+- | .+++.+.++..+. .+++.. ..+. .+. -...+|+++.++-.+++.+- .+|
T Consensus 59 ~~e~-----~------------~~~~~~~~~~~g~~~~~~~~~-~~l~-~~~-~~~~~~~~~~~~~~l~~il~~~~~~~~ 118 (230)
T PRK08533 59 STQL-----T------------TTEFIKQMMSLGYDINKKLIS-GKLL-YIP-VYPLLSGNSEKRKFLKKLMNTRRFYEK 118 (230)
T ss_pred eCCC-----C------------HHHHHHHHHHhCCchHHHhhc-CcEE-EEE-ecccccChHHHHHHHHHHHHHHHhcCC
Confidence 3211 1 1111111111111 111111 0110 000 01246677666555555443 369
Q ss_pred CEEEeecCCCCC----CHHHHHHHHHHHHHhcC-CcEEEEeccCchhH--------h-hcCEEEEEe
Q psy1502 494 VILVLDEATANV----DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI--------M-DSDKVLVMD 546 (597)
Q Consensus 494 ~ILILDEaTSaL----D~~te~~I~~~l~~~~~-~~TvI~IaHrlsti--------~-~~D~Iivl~ 546 (597)
+++++||||+.+ |+...+.+.+.++.+.+ ++|++ ++|..... . -||-|+.|+
T Consensus 119 ~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi-~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 119 DVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVII-LTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEE-EEecccccccccceeEEEeeeEEEEEE
Confidence 999999999999 77766778888876644 56555 45654432 2 157777776
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=130.85 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=93.0
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE-EEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS-IIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~-~V~Q~~~LF~gTI~eNI 434 (597)
|=+|+++. +.+..+.|.||+++||||+++.+.-.. +-.++| +||-+.. ..-++.++|
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~-~~i~~~~~i 374 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP-SEIPVFKEI 374 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC-ccccccceE
Confidence 44455543 345679999999999999999985421 122333 4554420 011233333
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHH
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~ 514 (597)
-. ++.++ -.+..+-..||+|++|+..|+|++ .+|+++|||||++++|+.....+.
T Consensus 375 ~~--~ig~~----------------------~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 375 FA--DIGDE----------------------QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred EE--ecCCc----------------------cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence 21 11111 112234468999999999999999 899999999999999999887775
Q ss_pred HH-HHHhc-CCcEEEEeccCchhHhhc-CEEEE
Q psy1502 515 RT-IRKKF-ADCTVLTIAHRLHTIMDS-DKVLV 544 (597)
Q Consensus 515 ~~-l~~~~-~~~TvI~IaHrlsti~~~-D~Iiv 544 (597)
.+ +..+. .++++|++||.......+ |+..+
T Consensus 430 ~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 430 ISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred HHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 54 43332 478999999998877653 44433
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-10 Score=117.37 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=107.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCcE--------------------------
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNIS-------------------------- 417 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I~-------------------------- 417 (597)
.||+..++||.+|-||||-++.++| +.|+-|.-- + +-.|..-++
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~--------pp~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-N--------PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-C--------CcchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 5899999999999999999999998 444444321 1 111222222
Q ss_pred EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||.|=|-.-.+++.+++.--. +.+...+++... .++......-..||||+-||.|||-+...++++.+
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~--~r~~~~~~~~~~----------~L~~~~~re~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKD--ERDNKEEVCDQL----------DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hcccHHHHHHHH----------HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeE
Confidence 222222222233333332100 000111122211 12333334456899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
+|||.|-||.+....--.+|+.+. .++-+|+|-|+|+.+.. .|-|.++-.
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999999999998887777888765 47899999999999874 788887754
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=141.10 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=68.9
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 471 GGTNFSVGQRQLICLARAI----VRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4458999999999999998 57889999999999999999999999999887788999999999999999999754
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=135.80 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCCCChhHHHHHHHHHHHcc----------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-c
Q psy1502 472 GTNFSVGQRQLICLARAIVR----------NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-S 539 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~----------~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~ 539 (597)
-..||||+++|++||+||.. +|++|+|||||++||+++-..+.+.|.++. .++||++|||....... |
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 46899999999999999985 799999999999999999999999998874 47899999999998864 8
Q ss_pred CEEEEEeCC
Q psy1502 540 DKVLVMDSG 548 (597)
Q Consensus 540 D~Iivl~~G 548 (597)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=127.29 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=56.3
Q ss_pred HccCCCEEEeecCCCCC-CHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh----------hcCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANV-DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM----------DSDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaL-D~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~----------~~D~Iivl~~G~Ive 552 (597)
+..+|+++++|||+++| |+.....+.+.++...+ +.++|++||.++.+. +||..++|.+|++.+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 35799999999999999 68999999999987654 789999999998874 799999999999865
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-10 Score=124.21 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=53.1
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCc-eEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEG-VIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
++|++|||++++||.++|+||||||||||++ .++ .|++| +|.+||.++...+.+.+..-- +|.|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~ 86 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDG 86 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHh
Confidence 5899999999999999999999999999999 444 46666 899999999887654433211 78776
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.5e-10 Score=107.28 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~ 446 (597)
.+.|+|||||||||+++.|++..+ ..|.|..-..++ ++... ...+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E~~~~---~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-EFVHE---SKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-ccccc---Cccceeeecc-----------------------
Confidence 589999999999999999998764 357766544443 11110 1112222210
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEE
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTV 526 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~Tv 526 (597)
+|.+...++. ++++|+..+|+++++||+. |.++-..+.++ ...+.++
T Consensus 56 ---------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~---a~~G~~v 102 (198)
T cd01131 56 ---------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTA---AETGHLV 102 (198)
T ss_pred ---------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH---HHcCCEE
Confidence 1111111211 4889999999999999996 77665444443 3358899
Q ss_pred EEeccCchhHhhcCEEEEEe
Q psy1502 527 LTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 527 I~IaHrlsti~~~D~Iivl~ 546 (597)
+.++|..+....+||++.|-
T Consensus 103 ~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 103 MSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEecCCcHHHHHhHHHhhc
Confidence 99999999988889987764
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-10 Score=136.12 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCchhhhCCC------CCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q psy1502 463 GLNMTVYEGG------TNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532 (597)
Q Consensus 463 GldT~vge~G------~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 532 (597)
|++..|...| ..||||||++++||+++. ++||++|||||+++||+.+...+.+.|.++.++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 4454554333 479999999999999997 588999999999999999999999999998888899999999
Q ss_pred chhHhhcCEEEEEeC
Q psy1502 533 LHTIMDSDKVLVMDS 547 (597)
Q Consensus 533 lsti~~~D~Iivl~~ 547 (597)
..++..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999999999987643
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=113.90 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=90.5
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
+++.+++|+.++|+|++|||||||++.|++++| ..|.+.|+ |..++.... ++.+.++.+.. -....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----------~~~~~ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----------GQGLA 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----------CCCcC
Confidence 557788999999999999999999999999986 46777775 444443322 22233222210 00000
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHH
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~ 518 (597)
.++ ..=+++++|-.+|+++++||+.+ .+ +.+.++
T Consensus 204 ~~~---------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~l~ 237 (308)
T TIGR02788 204 KVT---------------------------------------PKDLLQSCLRMRPDRIILGELRG---DE----AFDFIR 237 (308)
T ss_pred ccC---------------------------------------HHHHHHHHhcCCCCeEEEeccCC---HH----HHHHHH
Confidence 111 11246667888999999999996 33 233444
Q ss_pred HhcCC-cEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 519 KKFAD-CTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 519 ~~~~~-~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
....+ .+++...|-.+.....||+..|-.|++..
T Consensus 238 a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~ 272 (308)
T TIGR02788 238 AVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAG 272 (308)
T ss_pred HHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccc
Confidence 44334 46799999999888899999998888765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-09 Score=117.46 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=88.1
Q ss_pred HHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEecc
Q psy1502 456 DMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAH 531 (597)
Q Consensus 456 ~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaH 531 (597)
+|.... |++.. +......||||+.|||-||+.+-.+= =++|||||+.+|-+.--.++.++|+++.. |.|+|+|-|
T Consensus 463 ~fL~~V-GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDV-GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHc-CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 344443 44443 35556799999999999999996653 47899999999999877777778877653 889999999
Q ss_pred CchhHhhcCEEEEE------eCCeEEEecCchhHhhHhhhcccchHHHH
Q psy1502 532 RLHTIMDSDKVLVM------DSGVAVVSSFGFFFSKDLIEGTVSAKVLS 574 (597)
Q Consensus 532 rlsti~~~D~Iivl------~~G~Ive~~~g~y~~l~~~~~~~~~~~~~ 574 (597)
+..+++.||+|+-| ..|+|+. +|-+.++.+...+-..+-++
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~--~Gtp~~i~~~~~SlTG~YLs 588 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVA--EGTPEELLANPESLTGQYLS 588 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEE--ccCHHHHHhCCcchhhHhhc
Confidence 99999999999998 5678987 56666666544444444333
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=112.40 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=113.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++-++++-.|..+-.+++++ |.+.+|++++|+|++|+|||||++.|+|... +.|.|.+.|..-+
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------- 195 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------- 195 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-------------
Confidence 456677777776555688885 9999999999999999999999999999874 5666655443321
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCC-chhhhCCCCCCChhHHHHHHHHHHHc-------
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYEGGTNFSVGQRQLICLARAIV------- 490 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~Gl-dT~vge~G~~LSGGQrQRIaIARAll------- 490 (597)
+++|.+. ..++. .|+ .|.+=-.-.+-|.|+|+|.+.+.+.+
T Consensus 196 ----------ev~e~~~-----------~~l~~----------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~ 244 (432)
T PRK06793 196 ----------EVKDFIR-----------KELGE----------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQ 244 (432)
T ss_pred ----------cHHHHHH-----------HHhhh----------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 1222211 00000 111 12222445688999999999999988
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.++-++++||+|...|+. ++|-.++.+.. .+.|..+-+|-.+..++|.+ .++|.|..
T Consensus 245 G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~ 302 (432)
T PRK06793 245 GNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITG 302 (432)
T ss_pred CCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEE
Confidence 788999999999999997 44555565544 46788888885444455554 46888765
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-08 Score=88.11 Aligned_cols=116 Identities=31% Similarity=0.296 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCC--ceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChH
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE--GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~--G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e 443 (597)
++..+.|+||+|+||||++..|++..... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 47889999999999999999999876543 4566655444333322211
Q ss_pred HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHH-------H
Q psy1502 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR-------T 516 (597)
Q Consensus 444 ~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~-------~ 516 (597)
............+++.++..+++|-..+|+++++||+....+......... .
T Consensus 51 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~ 109 (148)
T smart00382 51 ---------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLL 109 (148)
T ss_pred ---------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHH
Confidence 112344456778889999999999998999999999999999998876653 2
Q ss_pred HHHhcCCcEEEEeccC
Q psy1502 517 IRKKFADCTVLTIAHR 532 (597)
Q Consensus 517 l~~~~~~~TvI~IaHr 532 (597)
......+..+|..+|.
T Consensus 110 ~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 110 LLKSEKNLTVILTTND 125 (148)
T ss_pred HHHhcCCCEEEEEeCC
Confidence 3334456788888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=94.13 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH----------HHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK----------TDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~----------te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
..+.++.++++.+++...+|+++|+||+++-+|.. ....+.+.+.... .+.|+|+++|..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 34455666889999999999999999999655544 3344444443433 378999999987655
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-09 Score=124.96 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=66.9
Q ss_pred CCCChhHHH------HHHHHHHHccC------CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCchhHhh
Q psy1502 473 TNFSVGQRQ------LICLARAIVRN------NVILVLDEATANVDPKTDLLIQRTIRKKFA-D-CTVLTIAHRLHTIMD 538 (597)
Q Consensus 473 ~~LSGGQrQ------RIaIARAll~~------p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrlsti~~ 538 (597)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 267999999999999999999988887753 3 489999999999999
Q ss_pred cCEEEEEeCC
Q psy1502 539 SDKVLVMDSG 548 (597)
Q Consensus 539 ~D~Iivl~~G 548 (597)
||++++|...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999753
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=100.29 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=84.2
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-cc
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GT 429 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gT 429 (597)
.+.|-+|++|++++|++++|.||+|+||||+++.+.... ..-|.-- +-. ...++++. .+|. -.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~v----pa~-------~~~i~~~~---~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDV----PAK-------SMRLSLVD---RIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCcc----Ccc-------ccEecccc---EEEEecC
Confidence 346889999999999999999999999999999988642 1223210 000 01111111 1111 12
Q ss_pred HHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 430 I~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
-.||+..+...=..|+.+ ++-.=....+|++++|||+++++|+..
T Consensus 82 ~~d~~~~~~StF~~e~~~-----------------------------------~~~il~~~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 82 ARDDIMKGESTFMVELSE-----------------------------------TANILRHATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred cccccccCcchHHHHHHH-----------------------------------HHHHHHhCCCCeEEEEecccCCCCchH
Confidence 233333221110112222 111111124789999999999999998
Q ss_pred HHHHHHH-HHHhcC--CcEEEEeccCchhHhhc
Q psy1502 510 DLLIQRT-IRKKFA--DCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 510 e~~I~~~-l~~~~~--~~TvI~IaHrlsti~~~ 539 (597)
...+..+ ++.+.+ ++++|++||........
T Consensus 127 g~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 127 GYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 7777766 555544 78999999998887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.6e-09 Score=102.18 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=53.4
Q ss_pred CCChhHHHHHHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhH
Q psy1502 474 NFSVGQRQLICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI 536 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti 536 (597)
.+|.|++|.++|+-+++..+ .++++|||-++|+|.....+.+.|.+..+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45999999999999998877 89999999999999999999999988776 78999999998754
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-09 Score=100.68 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=56.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc-------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE-------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~-------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
++|+.++|+||||||||||+++|++.++ ..|+ ++|.|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999998753 3577 699999989988888754 588889999999
Q ss_pred hhc
Q psy1502 432 KNL 434 (597)
Q Consensus 432 eNI 434 (597)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 884
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-08 Score=96.73 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=86.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc-cccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP 441 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~ 441 (597)
-+|+|+.+.|.|++|||||||+..++- .....+. +.|+..+- +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~-------------------~~y~~~e~-----------------~ 64 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKK-------------------VYVITTEN-----------------T 64 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCE-------------------EEEEEcCC-----------------C
Confidence 589999999999999999999988752 2222222 33443321 1
Q ss_pred hHHHHHHHHHhcH--HHHHHhcCCCchhhh---CCCCCCChhHHHHHHHHHHHcc--CCCEEEeecCCCCCC---HHHHH
Q psy1502 442 DYVLWTALQEVEL--KDMIMEGAGLNMTVY---EGGTNFSVGQRQLICLARAIVR--NNVILVLDEATANVD---PKTDL 511 (597)
Q Consensus 442 ~e~i~~a~~~a~l--~~fI~~l~GldT~vg---e~G~~LSGGQrQRIaIARAll~--~p~ILILDEaTSaLD---~~te~ 511 (597)
.+++.+-++..+. .+++. .|+-..+. +.....|.++++.+...+..+. +|+++++||+|+.+| .+.-.
T Consensus 65 ~~~~~~~~~~~g~~~~~~~~--~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~ 142 (234)
T PRK06067 65 SKSYLKQMESVKIDISDFFL--WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDIL 142 (234)
T ss_pred HHHHHHHHHHCCCChhHHHh--CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHH
Confidence 1122222222221 11111 12111110 1223457789999999999998 999999999996544 43333
Q ss_pred HHHHHHHHh-cCCcEEEEeccCchh-------Hh-hcCEEEEEeC
Q psy1502 512 LIQRTIRKK-FADCTVLTIAHRLHT-------IM-DSDKVLVMDS 547 (597)
Q Consensus 512 ~I~~~l~~~-~~~~TvI~IaHrlst-------i~-~~D~Iivl~~ 547 (597)
.+.+.+..+ ..++|+++++|.... +. -+|-++.|+.
T Consensus 143 ~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 143 NFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 443445432 247899999997653 22 2566666653
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-09 Score=123.11 Aligned_cols=76 Identities=21% Similarity=0.114 Sum_probs=63.9
Q ss_pred CCCCChhHHHHHHHHHHHcc--------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCE
Q psy1502 472 GTNFSVGQRQLICLARAIVR--------NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDK 541 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~--------~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~ 541 (597)
-..|||||+|+++|||||.. +|++|+|||||++||+.+-..+++.|.++. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999995 899999999999999999999999998875 57899999995555444 345
Q ss_pred EEEEeC
Q psy1502 542 VLVMDS 547 (597)
Q Consensus 542 Iivl~~ 547 (597)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555443
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=106.16 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=69.8
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEc---ceeCCCCChHHH-
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKID---DIDTEDVPLSKL- 412 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~id---g~di~~~~~~~l- 412 (597)
.+.++.++++..|..+..+++.++ +|.+||+++|+|+||||||||++.|.++. ++.|.|.+. |.++.++..+.+
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 346899999999977777999996 99999999999999999999999999987 467988874 566665544332
Q ss_pred ---hcCcEEEeCCC
Q psy1502 413 ---RSNISIIPQDP 423 (597)
Q Consensus 413 ---r~~I~~V~Q~~ 423 (597)
++.|++|+|..
T Consensus 216 ~~r~rtI~vV~qsd 229 (450)
T PRK06002 216 DNLKKAVAVVATSD 229 (450)
T ss_pred HhhCCeEEEEEcCC
Confidence 35799999964
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-07 Score=106.34 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=53.3
Q ss_pred HHHHHccCCCEEEeecCCCCC-CHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh---cCEEEEEeCCeEE
Q psy1502 485 LARAIVRNNVILVLDEATANV-DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD---SDKVLVMDSGVAV 551 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaL-D~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~---~D~Iivl~~G~Iv 551 (597)
|+|++..+|.++++|||++.| |+.....+.+.++...+ +.+++++||+++.+.. ++.|+..-+.+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 789999999999999999999 78899999888877653 7899999999998864 3334333444444
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-07 Score=96.41 Aligned_cols=122 Identities=21% Similarity=0.214 Sum_probs=79.6
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP 441 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~ 441 (597)
..++..+.|+|||||||||+++.+.+..+ .+|.|..-..++.-. .....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 35789999999999999999999998654 357765533322100 00001111110
Q ss_pred hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc
Q psy1502 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~ 521 (597)
.+|..+.. --=++++||-.+|+++++||+. |+++.....++ ..
T Consensus 176 -------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a~ 218 (343)
T TIGR01420 176 -------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA---AE 218 (343)
T ss_pred -------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---HH
Confidence 11211111 1235788999999999999997 99887765544 33
Q ss_pred CCcEEEEeccCchhHhhcCEEEEE
Q psy1502 522 ADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 522 ~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
.|.+++...|..+.....||++-|
T Consensus 219 tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 219 TGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred cCCcEEEEEcCCCHHHHHHHHHHh
Confidence 588999999998888777777543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=99.43 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 473 TNFSVGQRQLICLARAIVR---------NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~---------~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
..+|.||+++++||.+|.. +||||+||||+|.||+.....+.+.|.+. +.++++++|.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999764 579999999987654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.7e-07 Score=82.89 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
.-|-|+-=-=-+.|.+ ++.-|+|||||-|+|-+.-.-.+...|.++.+ |.-+|+.||.+=.+.. --.|+.++.|-+.
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 4488876655556654 56789999999999999999999999988764 6789999998765543 3788889888765
Q ss_pred E
Q psy1502 552 V 552 (597)
Q Consensus 552 e 552 (597)
+
T Consensus 208 ~ 208 (233)
T COG3910 208 E 208 (233)
T ss_pred c
Confidence 4
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-07 Score=101.96 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=48.0
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~ 435 (597)
+++.++.+++|+.+++|||+|+||||++..|++.+ ...|. .+|++|++|+ |.-+..||+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHH
Confidence 33455556789999999999999999999999876 34553 2678999998 6667788886
Q ss_pred c
Q psy1502 436 P 436 (597)
Q Consensus 436 ~ 436 (597)
.
T Consensus 307 ~ 307 (484)
T PRK06995 307 I 307 (484)
T ss_pred H
Confidence 4
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-07 Score=99.54 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=64.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
-++.+.-.+++|++++|+|+||+|||||++.|+|.. +..|+|.+++..... ...++++.+++|+.++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 355566668899999999999999999999999976 578999998754332 2346789999999999998888888
Q ss_pred ccC
Q psy1502 435 DPF 437 (597)
Q Consensus 435 ~~~ 437 (597)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 764
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-07 Score=101.56 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=63.0
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC---ceEEEcceeCCCCChHHH------hcCcEEEeCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE---GVIKIDDIDTEDVPLSKL------RSNISIIPQD 422 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~---G~I~idg~di~~~~~~~l------r~~I~~V~Q~ 422 (597)
+..+++++ |++.+||+++|+|+||+|||||+++|+|+++ +. |.|-.+|.+++++..+.| |..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 34589999 9999999999999999999999999999874 32 555556666666554444 4578999999
Q ss_pred CCCCC-ccHHhhc
Q psy1502 423 PVLFS-GTLRKNL 434 (597)
Q Consensus 423 ~~LF~-gTI~eNI 434 (597)
...+. -+..+|.
T Consensus 221 ~s~~~rl~a~e~a 233 (434)
T PRK07196 221 ESPLMRIKATELC 233 (434)
T ss_pred CChhhhHHHHHHH
Confidence 87774 4666665
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-08 Score=108.48 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh--cccc-CCceEEEcceeCCCCChHHHhc---CcEEEeCCCCCCCccHHhhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF--RLAE-VEGVIKIDDIDTEDVPLSKLRS---NISIIPQDPVLFSGTLRKNLDP 436 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~--~l~~-~~G~I~idg~di~~~~~~~lr~---~I~~V~Q~~~LF~gTI~eNI~~ 436 (597)
-+++|..+.|.|++|||||||..-++ |.-. -+..++|... -+++++++ .+|+-.|+..- .+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 48999999999999999999998764 4443 4566666542 34444443 44544443210 011211
Q ss_pred CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH--HHHccCCCEEEeecCCCCCCHHHHHHHH
Q psy1502 437 FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA--RAIVRNNVILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 437 ~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA--RAll~~p~ILILDEaTSaLD~~te~~I~ 514 (597)
-...+.......++..++.++ +..-...+|+|++||+.|+ .++..+|+.. ....+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~----------l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~ 147 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSAL----------IERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIF 147 (484)
T ss_pred EecCchhccccccccCCHHHH----------HHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHH
Confidence 000011111112222233333 2333357899999999999 6776665533 34555566
Q ss_pred HHHHHhc-CCcEEEEeccCchh--------H-h-hcCEEEEEe
Q psy1502 515 RTIRKKF-ADCTVLTIAHRLHT--------I-M-DSDKVLVMD 546 (597)
Q Consensus 515 ~~l~~~~-~~~TvI~IaHrlst--------i-~-~~D~Iivl~ 546 (597)
+.++.+. .++|+|+++|..+. + . -||.|+.|+
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6665543 37999999998753 2 3 379999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=89.43 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=55.3
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC--CC-CccHH
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LF-SGTLR 431 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~--LF-~gTI~ 431 (597)
..+=+.+.+++|+.++|+||+|||||||++.|+++.+ ..|.|.+.+.+-...+ .+..++++.|... .+ ..|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 4445667799999999999999999999999999875 5799999775433332 2455677766553 22 24677
Q ss_pred hhc
Q psy1502 432 KNL 434 (597)
Q Consensus 432 eNI 434 (597)
+++
T Consensus 91 ~~l 93 (186)
T cd01130 91 DLL 93 (186)
T ss_pred HHH
Confidence 766
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK11098 microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0021 Score=68.78 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 66 IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAA 145 (597)
Q Consensus 66 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i 145 (597)
+..+++++++...+..+..++......+-..-|.+.+.++.++.. ..+ .-=+||+.|+.............++
T Consensus 141 l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li 213 (409)
T PRK11098 141 VGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFI 213 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHH
Confidence 444555544444444444444444444444444444455444332 111 2467999999988887778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q psy1502 146 QGVMQVSGALIVSLSVNPLF-------------SIPVLILLYLF----WRLSKAYLRTSKSLKYLEGVTRSPVFTHLNAC 208 (597)
Q Consensus 146 ~~~~~~i~~~i~l~~~~~~l-------------~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 208 (597)
.++++++..+.+++.+|..+ ..++++..++. .++.+...+...+.++.|..-+..+ -...|.
T Consensus 214 ~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~L-Vrvren 292 (409)
T PRK11098 214 NAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKEL-VYGEDD 292 (409)
T ss_pred HHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHH-hHhhhh
Confidence 99999888888888887653 11222212222 2222222222222222222221111 111222
Q ss_pred HccHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHH
Q psy1502 209 LHGLPTIRAHGAA-KILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-SFFFFADIGGKVGLAVTQTM 286 (597)
Q Consensus 209 l~gi~~Ika~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~ 286 (597)
-+ +.| ....++|++..++..+........ ..+......+..++..+++. .+....+..|.+......+.
T Consensus 293 aE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~l-~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~ 363 (409)
T PRK11098 293 AD--------RATPPTVRELFSNVRKNYFRLYFHYMYF-NIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFG 363 (409)
T ss_pred hh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 11 112 234444444433332222111111 11111111111111111110 00001234455555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1502 287 TLMGVVQWAMRQAAEVENHMISVKRLVEYTKL 318 (597)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 318 (597)
++.+.++.++..+.++..-.+..+|+.++.+.
T Consensus 364 ~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 364 QVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999988653
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-07 Score=96.62 Aligned_cols=87 Identities=23% Similarity=0.227 Sum_probs=63.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc---cCCc-eEEEcceeCCCCChHHHhcCcEEEeCCC-----CCCCccHHhhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEG-VIKIDDIDTEDVPLSKLRSNISIIPQDP-----VLFSGTLRKNLD 435 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~~-----~LF~gTI~eNI~ 435 (597)
++|..++|+|||||||||+++.|++++ ++.| .|.....++ ++..+.+++..++|+|.. .-|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 589999999999999999999999976 2344 565544444 587777777778888864 357889999987
Q ss_pred cCC------CCChHH-HHHHHHHh
Q psy1502 436 PFE------KYPDYV-LWTALQEV 452 (597)
Q Consensus 436 ~~~------~~~~e~-i~~a~~~a 452 (597)
..+ ++.|.+ +..|++.+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHH
Confidence 433 344555 44566664
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0011 Score=68.08 Aligned_cols=178 Identities=10% Similarity=0.058 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-ccC---hhHHHHHHHHHHHHHHHHHHH
Q psy1502 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFS-TNP---SGRILNRFSKDMGAVDEVLPK 139 (597)
Q Consensus 64 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~-~~~---sG~l~~rit~D~~~i~~~~~~ 139 (597)
..+..++++++...+++....++....+.+....|...+.++.++-. .||. +.. ....=+||+.|++...+....
T Consensus 67 ~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~ 145 (281)
T PF06472_consen 67 RLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLS 145 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHH
Confidence 34555666666666666666677777777777777778888877766 5665 222 335667999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHh
Q psy1502 140 AMLDAAQGVMQVSGALIVSLSVNPLFSI-PVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAH 218 (597)
Q Consensus 140 ~~~~~i~~~~~~i~~~i~l~~~~~~l~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~ 218 (597)
....++..++.++.....++..+..+.+ ++++..++..++.+...+...++...++..+++.........++-+.|-.+
T Consensus 146 l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~ 225 (281)
T PF06472_consen 146 LFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFY 225 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhc
Confidence 8888888888888888888777777766 333333444455555555555554444455566666777778888999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 219 GAAKILVEEFDYHQDLHSSTWHLF 242 (597)
Q Consensus 219 ~~e~~~~~~~~~~~~~~~~~~~~~ 242 (597)
+.|+.+.++.++..+.....+...
T Consensus 226 ~Ge~~E~~~l~~~f~~l~~~~~~~ 249 (281)
T PF06472_consen 226 RGESRERRRLDRRFDALIDNWRRL 249 (281)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888776655544433
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-07 Score=89.22 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh-----cccC--CCCC
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN-----LDPF--EKYP 441 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN-----I~~~--~~~~ 441 (597)
.+||+|+||||||||++.|.++. ..|.+.+ +++|.+...-+.+++ ..+. ...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v-------------------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVI-------------------ISQDSYYKDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCCeEE-------------------EEecccccccccccHHHhccCCCCCCCccc
Confidence 48999999999999999999976 3344433 333332221111111 1111 1122
Q ss_pred hHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 442 DYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
.+.+.+ .+..+ .|- .+.-...+.|.|++++-.+ .+.+|+++|+|.+.+..++
T Consensus 61 ~~~~~~---------~l~~l~~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 FDLLIS---------HLQDLKNGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHH---------HHHHHHCCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 222222 22222 221 1222344777787776554 5788999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.8e-06 Score=88.80 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=115.4
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-cccc---CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAE---VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~~---~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+|.-|++. .+.+ +-||+| .+.|||..=-|||||++.|. |.|+ -.|+=++ --.+.
T Consensus 227 ve~~LP~~g-~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~V-----------------VT~~~ 285 (448)
T PF09818_consen 227 VEIELPNGG-TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFV-----------------VTDPD 285 (448)
T ss_pred EEEECCCCC-EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEE-----------------EECCC
Confidence 777776532 4555 478999 99999999999999999998 6884 2343222 11110
Q ss_pred CCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
-.. | .+.|- +....+++..||.+| .|.||. .=--.+=||---|=-.|..||=..+++|++||
T Consensus 286 avk-----i--------rAEDG---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE 348 (448)
T PF09818_consen 286 AVK-----I--------RAEDG---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDE 348 (448)
T ss_pred ceE-----E--------EecCC---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcC
Confidence 000 0 11111 122345667999998 999987 22235779999999999999999999999999
Q ss_pred CCCCC-----CHHHHHHH-------------HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 501 ATANV-----DPKTDLLI-------------QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaL-----D~~te~~I-------------~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
=|||- |...+..| ...|.+...-.|++++.--=..+.-||+|++||+=+..+
T Consensus 349 DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 349 DTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred cccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 99997 66667666 233333333345555555555567799999999966543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0058 Score=63.92 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLD 143 (597)
Q Consensus 64 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~ 143 (597)
..+..+++++++..++..+..++......+-..-+.+.+.++.+..+- .. +++ =.||+.|+.............
T Consensus 64 ~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~i-DNP----DQRI~EDi~~f~~~tl~l~~~ 137 (326)
T PRK12369 64 ASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NI-EGS----SQRIQEDTYRFAKIMESLGLS 137 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC-CCc----cHhHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555566666555321 11 222 279999999888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccchHHHHHH
Q psy1502 144 AAQGVMQVSGALIVSLSVNPLFSIP------------VLILLYLFWRLSKAYLRTSKSL----KYLEGVTRSPVFTHLNA 207 (597)
Q Consensus 144 ~i~~~~~~i~~~i~l~~~~~~l~l~------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e 207 (597)
++.++++++..+.+++.++..+.++ +++..++...+..+..+...++ ++.|..-+..+ -...|
T Consensus 138 ~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~L-vrvre 216 (326)
T PRK12369 138 FLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKEL-VYAED 216 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHH-Hhhcc
Confidence 9999999888888888877544221 1111112222222222221111 22222111100 00111
Q ss_pred HHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhhhhHHHHHHH
Q psy1502 208 CLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFF---FF-ADIGGKVGLAVT 283 (597)
Q Consensus 208 ~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~g~i~~~~~ 283 (597)
.-+. +.-.+...++|.+..+...+.... ..++..+......+...+..+... +. .+..|.+.....
T Consensus 217 ~ae~------~~E~~~l~~~f~~v~~n~~~~~~~----~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~ 286 (326)
T PRK12369 217 DKKN------YAKPETLIELFTGLRFNYFRLFLH----YGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISN 286 (326)
T ss_pred chhh------hhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 1111 111133444454443332222111 111222211111111111111111 11 234455555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1502 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTK 317 (597)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 317 (597)
.+..+.+.+..+...+.++..-.+..+|+.++.+
T Consensus 287 AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 287 AFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888899999999999999999988754
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-07 Score=96.23 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=50.3
Q ss_pred CcccEEEEeeEEEeCCCCccceeeeEEEcCCc-------EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKE-------KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~-------~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..|++++++++|+||..++++++++|++++|+ +++|||++|+|||||++.|.+-
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 46789999999999977889999999999999 9999999999999999999873
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8e-07 Score=85.49 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
|+.++|+||||||||||+++|.+..++ .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999987643 5788888877666666677888888883
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=107.74 Aligned_cols=61 Identities=26% Similarity=0.234 Sum_probs=54.9
Q ss_pred CCCCChhHHHHHH----HHHH--------HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 472 GTNFSVGQRQLIC----LARA--------IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 472 G~~LSGGQrQRIa----IARA--------ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
...||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++||++|++-
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 4689999999996 6766 55799999999999999999999999999988 789999999974
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=83.12 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEE-----------cceeCCCCChHHHh-----cCcEEEeCCCCCCCc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI-----------DDIDTEDVPLSKLR-----SNISIIPQDPVLFSG 428 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~i-----------dg~di~~~~~~~lr-----~~I~~V~Q~~~LF~g 428 (597)
|+.++|+||||||||||++.|++.++..|.+.+ +|.+....+.+.+. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 678999999999999999999987654465544 67777767666653 358888887655443
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-06 Score=85.43 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=36.5
Q ss_pred HHccCCCEEEeecCCCC------CCHHHHHHHHHHHHHhcC--CcEEEEeccCch
Q psy1502 488 AIVRNNVILVLDEATAN------VDPKTDLLIQRTIRKKFA--DCTVLTIAHRLH 534 (597)
Q Consensus 488 All~~p~ILILDEaTSa------LD~~te~~I~~~l~~~~~--~~TvI~IaHrls 534 (597)
+..++|+++|+| |+++ +|+..-..+.+.|.++.+ ++|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 445799999999 6654 688888888888877653 789999999764
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.2e-07 Score=94.76 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC---ceEEEcceeCCCCChHHHh----cCcEEEeCC
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE---GVIKIDDIDTEDVPLSKLR----SNISIIPQD 422 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~---G~I~idg~di~~~~~~~lr----~~I~~V~Q~ 422 (597)
+..+++++ +++.+||+++|+|+||+|||||++.|+++.. +. |.|-.+|.+++++..+.++ +++++|...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 34689999 9999999999999999999999999999874 33 8899999999887766554 566777654
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-06 Score=74.12 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=41.5
Q ss_pred HHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc------CCcEEEEeccCch
Q psy1502 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF------ADCTVLTIAHRLH 534 (597)
Q Consensus 480 rQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~------~~~TvI~IaHrls 534 (597)
++.....++...++.++++||+-.. +++....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998775 5566667777777763 5678889988654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=87.38 Aligned_cols=178 Identities=24% Similarity=0.237 Sum_probs=106.2
Q ss_pred eCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc
Q psy1502 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428 (597)
Q Consensus 350 Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g 428 (597)
|..+..+++++ |++.+|++++|+|+||+|||||++.|+++.+ +.|.+...|..-+++. .+... +..+
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~ 214 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGE 214 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcc
Confidence 34455689999 9999999999999999999999999999874 5576666555544432 11110 1111
Q ss_pred cHHhhcc-c---CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhh-CCCCCCChhHHHH-HHHHHHHccCCCEEEeecCC
Q psy1502 429 TLRKNLD-P---FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQL-ICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 429 TI~eNI~-~---~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vg-e~G~~LSGGQrQR-IaIARAll~~p~ILILDEaT 502 (597)
.-.++-. . .++..-++...+.-..-..|+... +|.|-.+= +.=.++- |-|| |++| +..|| .+
T Consensus 215 ~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd-~G~~Vll~~DslTr~A--~A~REisl~---~ge~P------~~ 282 (440)
T TIGR01026 215 EGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD-QGKDVLLLMDSVTRFA--MAQREIGLA---AGEPP------AT 282 (440)
T ss_pred cccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEeChHHHH--HHHHHHHHh---cCCCC------cc
Confidence 1112211 1 112223333332222233455544 47665432 2211211 1111 1111 22333 46
Q ss_pred CCCCHHHHHHHHHHHHHhcC-Cc-------EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 503 ANVDPKTDLLIQRTIRKKFA-DC-------TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~-~~-------TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+.|+..-..+-+-+++... ++ |+++-+|++ +-.-||.+.-+.||+|+-
T Consensus 283 ~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivL 339 (440)
T TIGR01026 283 KGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVL 339 (440)
T ss_pred cccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEE
Confidence 78999998888888877543 46 888899998 344689999999999986
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=103.31 Aligned_cols=43 Identities=28% Similarity=0.531 Sum_probs=36.1
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhc-ccc-CCceEEEcce
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAE-VEGVIKIDDI 402 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~-l~~-~~G~I~idg~ 402 (597)
+++..++++++||+|++|+|||||++.+.+ +.+ .+|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 467778899999999999999999999965 433 5899999763
|
syringae 6; Provisional |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-07 Score=94.39 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCCCccceeeeEEE---cCCcE-----EEEEcCCCCCHHHHHHHHhccccC----CceEEEcceeCCCCChHHHhc
Q psy1502 351 LSGPRVIKNLNITI---HPKEK-----IGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 351 ~~~~~vL~~isl~I---~~G~~-----vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~di~~~~~~~lr~ 414 (597)
|....+++++++.+ ++|+. +||+|+||||||||++.|.++... .|.|.+||..+.......+++
T Consensus 76 P~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 76 PVYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred CcHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 44456899999988 67887 999999999999999999997642 488999999987777666665
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-07 Score=103.94 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.9
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+++| +.|+||+|+||||+++.+++-
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHH
Confidence 56666 999999999999999999874
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=99.97 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=66.0
Q ss_pred CCCCChhHHHHH------HHHHHHccC--CCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEE
Q psy1502 472 GTNFSVGQRQLI------CLARAIVRN--NVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKV 542 (597)
Q Consensus 472 G~~LSGGQrQRI------aIARAll~~--p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~I 542 (597)
-..|||||+=.+ |||..+-.+ -+.|+|||||..||+++-..+.++|.++.. +++||||||.-.....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 358999998754 555566667 699999999999999999999999988766 59999999999999999999
Q ss_pred EEEeCC
Q psy1502 543 LVMDSG 548 (597)
Q Consensus 543 ivl~~G 548 (597)
+.++..
T Consensus 893 i~V~k~ 898 (908)
T COG0419 893 IRVKKD 898 (908)
T ss_pred EEEEec
Confidence 988653
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-05 Score=89.93 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHccCCCEEEeecCCCCCC-HHHHHHHHHHHHHhcC-CcEEEEeccCchhH----------hhcCEEEEEeC
Q psy1502 488 AIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI----------MDSDKVLVMDS 547 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD-~~te~~I~~~l~~~~~-~~TvI~IaHrlsti----------~~~D~Iivl~~ 547 (597)
.+-.+|.++++|||...|| +...+.+.+.++...+ +..++++||.++.+ .+|+--+.|-+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4567899999999999999 7888888888877654 67899999998764 45665455544
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.9e-06 Score=89.67 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=54.8
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED 406 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~ 406 (597)
++|++..|+ +..+++++++.+..|+.++++|++|||||||++.|.|+.| .+|++.+++..|.+
T Consensus 187 ~~d~~~v~G-q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIG-QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEEC-cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 457877774 4569999999999999999999999999999999999875 78999998877643
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=76.38 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=30.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh--ccccCCceEEEcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF--RLAEVEGVIKIDD 401 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~--~l~~~~G~I~idg 401 (597)
-+++|+.+.|.|++|||||||+..++ ++.+.++.+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999998665 3333445666654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.6e-06 Score=78.83 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchh--H-hhcCEEEEEeCCe
Q psy1502 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHT--I-MDSDKVLVMDSGV 549 (597)
Q Consensus 478 GQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlst--i-~~~D~Iivl~~G~ 549 (597)
|+-+|-+||.++..||+.+..+| +-+||...+.+.+.+.+... +.++++-+|.+.. + ..||.+++++.+.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 77899999999999999988887 67999999999988887653 3699999999843 3 5699999998874
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-06 Score=82.43 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhc-CcEEEeCCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRS-NISIIPQDP 423 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~-~I~~V~Q~~ 423 (597)
+|+.++|+|+||||||||++.|.++... +.+||.++... ..+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999997643 68899887432 23333 345555553
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-06 Score=85.61 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=35.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
|+|+.+||+|+||||||||++.|.++.+. ..+++++||.++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------------------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------------------LEIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------------------cCCeEecccccccC
Confidence 68999999999999999999999997641 25677777777664
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.10 E-value=7e-06 Score=79.86 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+++|+|++|||||||++.+.+..++.+.+.+-+.|........|....++++|+..+. +..|-.......++...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~-- 77 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILG---VETGGCPHTAIREDASM-- 77 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcCCCccceeccCHHH--
Confidence 6899999999999999999987654444656566776666666777789999987642 11121211111112111
Q ss_pred HHHhcHHHHHHhcCCCc-hhhhCCCCCCChhH
Q psy1502 449 LQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQ 479 (597)
Q Consensus 449 ~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQ 479 (597)
....+.+.+..++++| +.|+..|..+|.--
T Consensus 78 -~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 78 -NLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred -HHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 1223345555554455 45666676666554
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-06 Score=83.21 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=42.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
++|+.++|+|+||||||||+++|.+.. + ..|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 678999999999999999999999854 4 34789999988762 2233466666663
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.9e-05 Score=88.69 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHccCCCEEEeecCCCCCC-HHHHHHHHHHHHHhc-CCcEEEEeccCchhH----------hhcCEEEEEeCCe
Q psy1502 487 RAIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI----------MDSDKVLVMDSGV 549 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD-~~te~~I~~~l~~~~-~~~TvI~IaHrlsti----------~~~D~Iivl~~G~ 549 (597)
+.+-.+|.++++|||++.|| +.....+.+.++... .+.+++++||.++.+ .+|+--+.|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 44456899999999999999 677888888887764 478999999998744 3566666665543
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.9e-06 Score=81.04 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=49.8
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc------CCceEEEcceeCCCCChHHHhc---CcEEEeCCCCCCCccHH
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE------VEGVIKIDDIDTEDVPLSKLRS---NISIIPQDPVLFSGTLR 431 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~------~~G~I~idg~di~~~~~~~lr~---~I~~V~Q~~~LF~gTI~ 431 (597)
=+++|+.+.|+|++|||||||+.-++. ..+ .++.++||+.+ ..+.+.+.+ +.+. ...++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~~~~~~-------~~~~~~ 85 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIAERFGL-------DPEEVL 85 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHHHHhcc-------ChHhHh
Confidence 389999999999999999999998863 223 26888998865 234444433 2333 224577
Q ss_pred hhcccCCCCChHHHH
Q psy1502 432 KNLDPFEKYPDYVLW 446 (597)
Q Consensus 432 eNI~~~~~~~~e~i~ 446 (597)
+|+.+....+.+++.
T Consensus 86 ~~i~~~~~~~~~~l~ 100 (235)
T cd01123 86 DNIYVARAYNSDHQL 100 (235)
T ss_pred cCEEEEecCCHHHHH
Confidence 787665444444443
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=78.61 Aligned_cols=44 Identities=30% Similarity=0.514 Sum_probs=36.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g 428 (597)
+++..|||+|+||||||||++.|.+.++ ...+++++||.+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--------------------CCceEEEeCCccccCc
Confidence 4688999999999999999999998651 2468888998887754
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-06 Score=80.01 Aligned_cols=75 Identities=25% Similarity=0.228 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccC-------------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEV-------------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~-------------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
|+.++|+||||||||||++.|++.++. .|+ ++|.+..-++.+.+.+.+ +++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 789999999999999999999996531 222 355555545555555543 46666666666666
Q ss_pred cccCCCCChHHHHHHH
Q psy1502 434 LDPFEKYPDYVLWTAL 449 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~ 449 (597)
. ++ .+.+.+.+++
T Consensus 76 ~-y~--~~~~~i~~~~ 88 (180)
T TIGR03263 76 Y-YG--TPKSPVEEAL 88 (180)
T ss_pred e-eC--CcHHHHHHHH
Confidence 3 32 3344444443
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=79.01 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=38.2
Q ss_pred EEEeeEEEeCCCC-----ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 342 EFQNTNVRYLSGP-----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 342 ~f~nVsf~Y~~~~-----~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++..|++.... ..|.+++| +++|+.+.|+||+|+|||+|+..|....
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3566666663221 24788899 9999999999999999999999996543
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-06 Score=81.15 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.4
Q ss_pred hhhCCCCCCChhHHHHHH--HHHHHcc-CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCC
Q psy1502 467 TVYEGGTNFSVGQRQLIC--LARAIVR-NNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523 (597)
Q Consensus 467 ~vge~G~~LSGGQrQRIa--IARAll~-~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~ 523 (597)
.++.+.-.+|+||+|++. +++.+-. +++++ ||||+|.+.-..+.+.|.++.++
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566678999999987 6677644 34443 99999999999999999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 597 | ||||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-43 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-41 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-32 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-29 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-29 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-29 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-20 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-20 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-28 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-27 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-27 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-26 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 6e-25 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-24 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-24 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-24 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-24 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-24 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-24 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-23 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-23 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-23 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-17 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-16 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-16 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-15 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 6e-14 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 9e-14 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-13 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-13 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-12 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-11 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-11 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-11 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-11 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-11 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-11 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-09 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-06 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-04 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-04 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-04 |
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-135
Identities = 81/242 (33%), Positives = 143/242 (59%), Gaps = 13/242 (5%)
Query: 312 LVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKI 370
L+E + ++ + WP G++ ++ +Y G +++N++ +I P +++
Sbjct: 2 LIENSHVKKDDI-----------WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRV 50
Query: 371 GIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430
G++GRTG+GKS+L++A RL EG I+ID + + + L + R +IPQ +FSGT
Sbjct: 51 GLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110
Query: 431 RKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAI 489
RKNLDP + D +W EV L+ +I + L+ + +GG S G +QL+CLAR++
Sbjct: 111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170
Query: 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
+ IL+LDE +A++DP T +I+RT+++ FADCTV+ R+ +++ D+ LV++
Sbjct: 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENK 230
Query: 550 AV 551
Sbjct: 231 VR 232
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 6e-76
Identities = 119/513 (23%), Positives = 229/513 (44%), Gaps = 48/513 (9%)
Query: 64 SYIGIYFSLIVGLFVA-GISRSTAFYSACM-----RCSKGIHKKMFEAVVYSPLAFFSTN 117
S + +++GL + GI+ + Y C+ + + +++F ++ P+AFF
Sbjct: 62 SVLLWMPLVVIGLMILRGITSYISSY--CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ 119
Query: 118 PSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL---- 173
+G +L+R + D V A++ + + G I+ + SI +++L
Sbjct: 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 179
Query: 174 YLFWRLSKAYLRTSKSL-KYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYH- 231
+SK + SK++ + VT T L G + G ++ + FD
Sbjct: 180 IAIRVVSKRFRSISKNMQNTMGQVT-----TSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 232 QDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQT------ 285
+ + +++ +I + L L+ +L + + T
Sbjct: 235 NKMRLQGMKMVSASSISDP-IIQLIASLALAFVLY-------AASFPSVMDSLTAGTITV 286
Query: 286 -MTLMGVVQWAMRQAAEVENH----MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGK 340
+ M + ++ V M + + L E E + E + I G
Sbjct: 287 VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD-----EGKRVIDRATGD 341
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+EF+N Y ++N+N+ I + + +VGR+G+GKS++ + I R ++ EG I
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN--LDPFEKYPDYVLWTALQEVELKD 456
+D D + L+ LR+ ++++ Q+ LF+ T+ N E+Y + A + D
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
I + GL+ + E G S GQRQ I +ARA++R++ IL+LDEAT+ +D +++ IQ
Sbjct: 462 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + T L IAHRL TI +D+++V++ G
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 2e-75
Identities = 112/512 (21%), Positives = 229/512 (44%), Gaps = 44/512 (8%)
Query: 63 ESYIGIYFSLIVGLFVA-GISRSTAFYSACMRCSKGIH---KKMFEAVVYSPLAFFSTNP 118
+++ I +I+GL G+S + Y + +++F ++ P+ FF
Sbjct: 61 SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES 120
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL----Y 174
+G +L+R + D V +A++ + + G L + + S+ ++++ +
Sbjct: 121 TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAF 180
Query: 175 LFWRLSKAYLRTSKSL-KYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYH-Q 232
+SK + + S+++ + VT + L G + ++G ++ + FD
Sbjct: 181 AISFVSKRFRKISRNMQTAMGHVT-----SSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235
Query: 233 DLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQT------- 285
+ T L ++ +I + L L +L + + T
Sbjct: 236 SMRQQTMKLVSAQSIADP-VIQMIASLALFAVLF-------LASVDSIRAELTPGTFTVV 287
Query: 286 MTLMGVVQWAMRQAAEVENH----MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
+ M + ++ V + M + + L LE E + + E V G++
Sbjct: 288 FSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD-----NGKYEAERVNGEV 342
Query: 342 EFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ ++ Y + + +++ +I + + +VGR+G+GKS++ R +V G I +
Sbjct: 343 DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN--LDPFEKYPDYVLWTALQEVELKDM 457
D D D L+ LR + +++ Q+ LF+ T+ N +Y + A ++ +
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF 462
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
I GL+ + E GT+ S GQRQ + +ARA++R+ +L+LDEAT+ +D +++ IQ
Sbjct: 463 IENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + TVL IAHRL TI +D++LV+D G
Sbjct: 523 LDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 9e-75
Identities = 112/531 (21%), Positives = 217/531 (40%), Gaps = 45/531 (8%)
Query: 45 KIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFV--AGISRSTAFYSACM--RCSKGIHK 100
++ IN H + + I + + + I K
Sbjct: 39 YAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRK 98
Query: 101 KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLS 160
K++ + F++ N G++++R D+ + + +++ + + AL +
Sbjct: 99 KLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF 158
Query: 161 VNP------LFSIPVLILLYLFW--RLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGL 212
++ LF P IL + RL K S++L + V L+ + G+
Sbjct: 159 LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQAL--------AEVQGFLHERVQGI 210
Query: 213 PTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFF--F 270
+++ + FD + N I+ + + I++ +
Sbjct: 211 SVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV--TDIGPIIVIGVGAY 268
Query: 271 FADIGGKVGLAVTQT-MTLMGVVQWAMRQAAEVENH----MISVKRLVEYTKLEPEGNLS 325
A I G + + + + ++ +R+ S+ R+ + + +
Sbjct: 269 LA-ISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD---I 324
Query: 326 PNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
N I G+I+ + + +Y ++K++N++I E + VG +G GKS+LI
Sbjct: 325 KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 384
Query: 385 AAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY--- 440
I R +V G I ID + +D LR+ I ++ QD +LFS T+++N+
Sbjct: 385 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI----LLGRP 440
Query: 441 --PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
D + A + D IM G + V E G S GQ+Q + +AR + N IL+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
LDEAT+ +D +++ +IQ + D T L +AHRL TI +DK++V+++G
Sbjct: 501 LDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 3e-67
Identities = 137/521 (26%), Positives = 237/521 (45%), Gaps = 65/521 (12%)
Query: 64 SYIGIYFSLIVGLFVAGISRSTAFYSACM-----RCSKGIHKKMFEAVVYSPLAFFSTNP 118
+ Y ++ ++ S M + K++FE + P+ FF P
Sbjct: 74 DLLPRYMLILGTIYALT-SLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTP 132
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLIL 172
G I++R D+ ++ VL +++ G++ ++GA+I+ VN L +P+ +L
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 173 LYLFW--RLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFD- 229
+ + K + + L L G + + GL I+ + +E+FD
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDR 244
Query: 230 YHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
++ L +++ + L++ + L LIS F GG LA+ +T+
Sbjct: 245 VNESLRKVGTKAQIFSGV-LPPLMNMVN--NLGFALISGF-----GGW--LALKDIITV- 293
Query: 290 GVVQWA-----------MRQAAEVENHMIS----VKRLVEYTKLEPEGNLSPNYEDENEI 334
G + + + + N + +R+ E LE E + D E+
Sbjct: 294 GTIA-TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE----KDDPDAVEL 348
Query: 335 WPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV- 393
V G+IEF+N Y V+K++ I P +K+ +VG TG+GK++++ + R +V
Sbjct: 349 REVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTA 448
G I +D ID + S LRS+I I+ QD +LFS T+++NL KY D + A
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEIKEA 464
Query: 449 LQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
+ I G + + G + S GQRQL+ + RA + N IL+LDEAT+NVD
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 508 KTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
KT+ IQ + K T + IAHRL+TI ++D ++V+ G
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDG 565
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 1e-63
Identities = 101/516 (19%), Positives = 209/516 (40%), Gaps = 47/516 (9%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFST--NPSGRI 122
+ ++ L + F+ + F A +K + +F++++ +++F N +G +
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 123 LNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLILL-YL 175
R + D V + Q + + +I+SL L +P++ + +
Sbjct: 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVV 870
Query: 176 FWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQD-- 233
++ K K LEG + + T+ + + +
Sbjct: 871 EMKMLSGQ--ALKDKKELEGSGK-----IATEAIENFRTVVSLTREQKFETMYAQSLQIP 923
Query: 234 LHSSTWHLFVY-TNMGFAYLIDFLC---LLYLSTILI-----SFF-FFADIGGKVGLAVT 283
++ V+ F + + L+ +F V A+
Sbjct: 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVL-----LVFSAIV 978
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVL-GKIE 342
M V Q A + +S ++ + PE +Y + +L G ++
Sbjct: 979 --FGAMAVGQ-VSSFAPDYAKATVSASHIIRIIEKTPE---IDSYSTQGLKPNMLEGNVQ 1032
Query: 343 FQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
F Y + P V++ L++ + + + +VG +G GKS+++ + R + G + +
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKD 456
D + + + + LR+ + I+ Q+P+LF ++ +N+ D + A +E +
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
I N V + GT S GQ+Q I +ARA+VR IL+LDEAT+ +D +++ ++Q
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ K T + IAHRL TI ++D ++V+ +G
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 4e-61
Identities = 126/548 (22%), Positives = 228/548 (41%), Gaps = 48/548 (8%)
Query: 32 TAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLI-VGLFVAGISRSTAFYSA 90
+F + S ++ + L + Y++ I G+ + + + + A
Sbjct: 76 DSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLA 135
Query: 91 CMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQ 150
R I +K F A++ + +F + G + R + D+ ++E + + Q +
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMAT 195
Query: 151 VSGALIVSLSVNP------LFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTH 204
G I+ + L PVL L W + T K L
Sbjct: 196 FFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELHAYAKAG-----AV 249
Query: 205 LNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTW---HLFVYTNMGFAYLIDFLC---L 258
L + T+ A G K +E ++ + + + +MG A+L+ +
Sbjct: 250 AEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALA 309
Query: 259 LYLSTILISF----------FFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMIS 308
+ T L+ FF+ + G +V Q + A R AA +I
Sbjct: 310 FWYGTSLVISKEYSIGQVLTVFFSVLIG--AFSVGQASPNIEAFANA-RGAAYEVFKII- 365
Query: 309 VKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHP 366
G+ N + G +EF+N + Y S +++K LN+ +
Sbjct: 366 -DNKPSIDSFSKSGHKPDN---------IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKS 415
Query: 367 KEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL 425
+ + +VG +G GKS+ + + RL + ++G++ ID D + + LR I ++ Q+PVL
Sbjct: 416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL 475
Query: 426 FSGTLRKNLDP-FEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLI 483
F+ T+ +N+ E + A++E D IM+ + V E G S GQ+Q I
Sbjct: 476 FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543
+ARA+VRN IL+LDEAT+ +D +++ ++Q + K T + IAHRL T+ ++D +
Sbjct: 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIA 595
Query: 544 VMDSGVAV 551
D GV V
Sbjct: 596 GFDGGVIV 603
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 4e-61
Identities = 108/426 (25%), Positives = 203/426 (47%), Gaps = 55/426 (12%)
Query: 153 GALIVSLSVNP------LFSIPVL--ILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTH 204
G +++++S+N +F IP + + ++L + + + + +S + V R
Sbjct: 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRE----- 207
Query: 205 LNACLHGLPTIRAHGAAKILVEEFDY-HQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST 263
N L G+ +RA + E F ++ L S + ++ + FA + + +
Sbjct: 208 -N--LLGVRVVRAFRREEYENENFRKANESLRRSI--ISAFSLIVFALPLFIFIV-NMGM 261
Query: 264 ILISFF--FFADIGG-KVG--LAVTQ--TMTLMGVVQWAM------RQAAEVENHMISVK 310
I + +F ++G +A T + ++ R +A S K
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA-------SAK 314
Query: 311 RLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEK 369
R++E +P ++ + V G + F+N RY V+ +N ++ P
Sbjct: 315 RVLEVLNEKPAIE---EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSL 371
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428
+ ++G TG+GKS+L+ I RL + G +++D++D V L LR +IS +PQ+ VLFSG
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 429 TLRKNLDPFEKY-----PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQL 482
T+++NL K+ D + A + ++ D I+ G + V GG NFS GQ+Q
Sbjct: 432 TIKENL----KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV 542
+ +ARA+V+ +L+LD+ T++VDP T+ I +++ CT I ++ T + +DK+
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 543 LVMDSG 548
LV+ G
Sbjct: 548 LVLHEG 553
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 4e-58
Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 6/216 (2%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ ++ + Y +++++++ P I G +G GKS++ + + R + G I I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV---LWTALQEVELKD 456
D +++ L RS I + QD + +GT+R+NL + DY LW L +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL-TYGLEGDYTDEDLWQVLDLAFARS 120
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ LN V E G S GQRQ + +ARA +RN IL+LDEATA++D +++ ++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ T L IAHRL TI+D+DK+ ++ G
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 4e-57
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 337 VLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-E 394
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY--PDYVLWTALQEV 452
G + ID D + LR + ++ QD VL + ++ N+ P ++++V
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI----SLANPG----MSVEKV 115
Query: 453 EL-------KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+
Sbjct: 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+D +++ +I R + K TV+ IAHRL T+ ++D+++VM+ G V
Sbjct: 176 LDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 9e-57
Identities = 77/250 (30%), Positives = 137/250 (54%), Gaps = 14/250 (5%)
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIH 365
I ++ + + K E E + + G+IEF+N + Y G +++++ T+
Sbjct: 22 FIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVM 78
Query: 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424
P + + +VG +GAGKS+++ +FR ++ G I+ID D V + LRS+I ++PQD V
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138
Query: 425 LFSGTLRKNLDPFEKY-----PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVG 478
LF+ T+ N+ +Y + + A Q + D IM G V E G S G
Sbjct: 139 LFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538
++Q + +AR I++ I++LDEAT+ +D + IQ ++ K A+ T + +AHRL T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 539 SDKVLVMDSG 548
+D++LV+ G
Sbjct: 255 ADQILVIKDG 264
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 3e-56
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 12/233 (5%)
Query: 327 NYEDENEIWPVLGKIEFQNTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
++ + IEF + N Y +K++N I +VG TG+GKS++
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 385 AAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY---- 440
++R + EG IKI + + +RS I I+PQD +LF+ T++ N+ Y
Sbjct: 64 KLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLD 119
Query: 441 -PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
D + A + +L D I + V G S G+RQ I +AR ++++ I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
DEAT+++D KT+ L Q+ + + T++ IAHRL TI ++ +++++ G V
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIV 232
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 6e-48
Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)
Query: 336 PVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE- 392
+ G ++FQ+ + Y + P +V++ L T++P + +VG G+GKS++ A + L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 393 VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
G + +D L + ++ + Q+P+LF + R+N+ Y L
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI----AY-------GLTRT 120
Query: 453 ELKDMIMEGA--------------GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
+ I A G + V E G S GQRQ + LARA++R +L+L
Sbjct: 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 499 DEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
D AT+ +D L +QR + + ++A TVL I +L + +L + G
Sbjct: 181 DNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-30
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 32/253 (12%)
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDEN--EIWPVLGKIEFQNTNVRYLSGPRVIKNLNIT 363
+ ++ + + + ++ N + + F N L G V+K++N
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNF---SLLGTPVLKDINFK 60
Query: 364 IHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
I + + + G TGAGK+SL+ I L EG IK IS Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQN 107
Query: 423 PVLFSGTLRKN-----LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTNFS 476
+ GT+++N D +Y + L+ +D+ + + EGG S
Sbjct: 108 SWIMPGTIKENIIGVSYDE-YRYRSVIKACQLE----EDISKFAEK-DNIVLGEGGITLS 161
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVLTIAHRLHT 535
GQR I LARA+ ++ + +LD +D T + + + K A+ T + + ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 536 IMDSDKVLVMDSG 548
+ +DK+L++ G
Sbjct: 222 LKKADKILILHEG 234
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 27/219 (12%)
Query: 339 GKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGV 396
++ +N + G V+K++N I + + + G TGAGK+SL+ I L EG
Sbjct: 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLWTALQ 450
IK IS Q + GT+++N D +Y + L+
Sbjct: 65 IKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSYDE-YRYRSVIKACQLE 110
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT- 509
+D+ N+ + EGG S GQR I LARA+ ++ + +LD +D T
Sbjct: 111 ----EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + K A+ T + + ++ + +DK+L++ G
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-24
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 338 LGKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEG 395
+ I +N + S P + + +I + +VG+ G GKSSL++A+ + +VEG
Sbjct: 1 MNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLWTAL 449
+ I + +++ +PQ + + +LR+N L+ Y + AL
Sbjct: 61 HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEE-PYYRSVIQACAL 106
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
D+ + +G + E G N S GQ+Q + LARA+ N I + D+ + VD
Sbjct: 107 L----PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 510 -DLLIQRTIRKK--FADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + I K + T + + H + + D ++VM G
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGG 204
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAEVEGVI 397
++ + N Y G +K +N+ I E I+G G GKS+L I L G I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRI 65
Query: 398 KID--DIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRK-------NLD-PFEKYPDYVL 445
D ID + KLR +I I+ QDP LFS ++ + N+ P ++ V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ ++ + + + S GQ++ + +A +V +L+LDE TA +
Sbjct: 126 N-ALKRTGIEHL------KDKPTHC----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 506 DPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
DP I + + + K T++ H + + D V VM G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 9e-23
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 36/229 (15%)
Query: 340 KIEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAE 392
+IE N + + G + ++N+++ I+ E + + G TG+GKS+L+ A + +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP 59
Query: 393 VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRK-------NLDPFEKYPDY 443
G + D + ++R NI I Q P F+ + N P
Sbjct: 60 TSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD---- 112
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNF--SVGQRQLICLARAIVRNNVILVLDEA 501
V L ME GL+ ++ F S G+++ + +A IV IL+LDE
Sbjct: 113 -------PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 502 TANVDPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+D + + R + K K TV+ I+H + T+++ D+V+V++ G
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-21
Identities = 53/308 (17%), Positives = 105/308 (34%), Gaps = 51/308 (16%)
Query: 250 AYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISV 309
YL DF+C++Y + G VT + E N +
Sbjct: 285 DYLSDFVCIIY------------GVPSVYG-VVTLPAS-----------VREGINIFLDG 320
Query: 310 KRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEK 369
E + E + ++ F +++ G V+ E
Sbjct: 321 HIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEI 380
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD-IDTEDVPLSKLRSNISIIPQDPV--LF 426
+ ++G G GK++LI + G +K D+ D + +S I+ V LF
Sbjct: 381 LVMMGENGTGKTTLIKLL------AGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLF 434
Query: 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
+R + D ++ + + D+ ++ V S G+ Q + +
Sbjct: 435 FKKIRGQFLNPQFQTD-----VVKPLRIDDI------IDQEVQH----LSGGELQRVAIV 479
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVL 543
A+ I ++DE +A +D + ++ + IR+ T + H +DKV+
Sbjct: 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 544 VMDSGVAV 551
V + +
Sbjct: 540 VFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 43/238 (18%), Positives = 89/238 (37%), Gaps = 36/238 (15%)
Query: 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----E 392
L + RY S + T P + +G+VG G GKS+ + +
Sbjct: 75 LPTNLEAHVTHRY-SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 393 VEGVIKIDDI-------DTEDVPLSKLRSNISIIPQDPVLF------SGTLRKNLD---- 435
+ + +I + ++ L +I I + + G ++K +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 436 PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
EK P+ V ++ ++L+++ L + + S G+ Q + + V+ +
Sbjct: 194 RMEKSPEDVKR-YIKILQLENV------LKRDIEK----LSGGELQRFAIGMSCVQEADV 242
Query: 496 LVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ DE ++ +D K L + IR V+ + H L + SD V ++ +V
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 6e-21
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
I+ +N + ++N+N+ + EK+ I+G G+GK++L+ AI L G I
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSG--TLRKNLD---PFEKYPDYVLWTALQEV 452
I+ ++ + K+R+ I P + T+ + + + L+ +
Sbjct: 61 FINGME-----VRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKAL 115
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
+L + I L +Y+ S GQ L+ + A+ I+ LDE NVD +
Sbjct: 116 KLGEEI-----LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
I R I++ + + H L + + G
Sbjct: 167 ISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVG 201
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 7e-21
Identities = 37/229 (16%), Positives = 87/229 (37%), Gaps = 32/229 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
I+ G ++K ++ I +K + G GAGK++L+ + G + +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 400 D--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL---------WTA 448
+R +I + L + E+ D V+ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHS-------LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 449 LQEVELK--DMIMEGAGLNMTVYEGGTNF---SVGQRQLICLARAIVRNNVILVLDEATA 503
+ + +++ G++ + S G++Q + +ARA++ +L+LDE A
Sbjct: 134 IDDEIRNEAHQLLKLVGMS---AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 504 NVDPKT-DLLIQ--RTIRKKFADCTVLTIAHRLHTIMDS-DKVLVMDSG 548
+D + L+ ++ + ++ + H + I + K+L++ G
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDG 239
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-19
Identities = 35/227 (15%), Positives = 86/227 (37%), Gaps = 40/227 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
K+E ++ +V Y V++ + +TI + G G GK++L+ I + ++G I
Sbjct: 10 KLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
+ + ++K++ I +P++ ++ +L + + L
Sbjct: 68 YNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-YGVKVNKNEIMDAL-- 119
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
+ VE+ D+ + S G + + LA ++ N I VLD+ +D
Sbjct: 120 --ESVEVLDL-------KKKL----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 508 KTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552
+ + ++I + + ++ + + D + +
Sbjct: 167 DSKHKVLKSILEILKEKGIVII-SSR--EELSYCDVNENLHKYSTKI 210
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-18
Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 33/231 (14%)
Query: 344 QNTNVRYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAIFRL-------AEVEG 395
++ RY G + + +GIVG G GK++ + +
Sbjct: 95 EDCVHRY--GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 396 VIKIDDIDTEDVP--LSKLRSN-ISIIPQ------DPVLFSGTLRKNLDPFEKYPDYVLW 446
I ++ +L++ I + + P G +R+ L ++
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE------V 206
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+EV +K++ +E L+ +++ S G+ Q + +A A++R DE ++ +D
Sbjct: 207 GKFEEV-VKELELENV-LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 507 PKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSF 555
+ L + R IR+ VL + H L + SD + V+ V F
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 311
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 33/262 (12%)
Query: 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDD 401
+ + G ++ I E IGIVG G GK++ + + + E EG ++ D
Sbjct: 358 VEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD- 416
Query: 402 IDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
+ ++ I + V L S L+ + L+ + + D+
Sbjct: 417 -----LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-----LLKPLGIIDL-- 464
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
+ V + S G+ Q + +A ++R+ I +LDE +A +D + L + R IR
Sbjct: 465 ----YDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516
Query: 520 --KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSA-KVLSS 575
+ + T L + H + I SD+++V + + EG +
Sbjct: 517 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG--MREGMNRFLASVGI 574
Query: 576 RKRREKED---RIGESQSFRER 594
RR+ + R + S ++R
Sbjct: 575 TFRRDPDSGRPRANKEGSVKDR 596
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 9e-18
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 34/232 (14%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
I+ N + G R I N+++ + + G++G +GAGKS+LI + L EG
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLFSG-TLRKNLD-PFE--KYPDYVLWTAL 449
+ +D + + L+K R I +I Q L S T+ N+ P E P + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 450 QE----VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
E V L D Y +N S GQ+Q + +ARA+ N +L+ D+AT+ +
Sbjct: 145 TELLSLVGLGD--------KHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 506 DPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
DP T +LL + I ++ T+L I H + + D V V+ +G +
Sbjct: 195 DPATTRSILELL--KDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELI 243
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 24/217 (11%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDV 407
++ ++ + L+ + E + +VG GAGKS+L+A + + +G I+ E
Sbjct: 7 LQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW 66
Query: 408 PLSKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLW--TALQEVELKDMIMEGAGL 464
+KL + + + Q F+ + Y+ EL + + L
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVW----------HYLTLHQHDKTRTELLNDVAGALAL 116
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIV-------RNNVILVLDEATANVDPKTDLLIQRTI 517
+ + S G+ Q + LA ++ +L+LDE ++D + + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176
Query: 518 RKKFAD--CTVLTIAHRL-HTIMDSDKVLVMDSGVAV 551
+ ++ +H L HT+ + + ++ G +
Sbjct: 177 S-ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+ +N Y + + + LN ++ + + ++G+ G GKS+L+ + + ++G I++
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 400 DDIDTEDVPLSKLRSNISIIPQDP-----------VLFSGTLRKNLDPFEKYPDY--VLW 446
+I +PQ VL + N K DY +
Sbjct: 65 Y-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111
Query: 447 TALQEV---ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
AL + L T+ S GQRQLI +ARAI +++LDE T+
Sbjct: 112 -ALDYLNLTHLAKREF-------------TSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 504 NVDPKTDLLIQRTIRK--KFADCTVLTIAHRL-HTIMDSDKVLVMDSGV 549
+D ++ + + + TV+ H+ + ++K L+++
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 5e-17
Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 33/230 (14%)
Query: 345 NTNVRYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAI-------FRLAEVEGV 396
+ RY G + + +GIVG G GKS+ + +
Sbjct: 26 DCVHRY--GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 397 IKIDDIDTEDVP--LSKLR-SNISIIPQ------DPVLFSGTLRKNLDPFEKYPDYVLWT 447
I ++ KL+ I + + P G + + L ++ L
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE--TGKLEE 141
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
++ +EL+++ L + S G+ Q + +A A++RN DE ++ +D
Sbjct: 142 VVKALELENV------LEREIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSF 555
+ L R IR+ +VL + H L + SD + V+ V F
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIF 241
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 5e-16
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 27/228 (11%)
Query: 325 SPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
+ E + + + G ++ I E IGIVG G GK++ +
Sbjct: 270 EIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFV 329
Query: 385 AAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDPFEKYP 441
+ + E EG I+ D + ++ I + V L S L+
Sbjct: 330 KMLAGVEEPTEGKIEWD------LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKT 383
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+ L+ + + D+ + V E S G+ Q + +A ++R+ I +LDE
Sbjct: 384 E-----LLKPLGIIDL------YDREVNE----LSGGELQRVAIAATLLRDADIYLLDEP 428
Query: 502 TANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMD 546
+A +D + L + R IR + + T L + H + I SD+++V +
Sbjct: 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 6e-17
Identities = 34/229 (14%), Positives = 82/229 (35%), Gaps = 46/229 (20%)
Query: 349 RYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAI-----FRLAEVEGVIKIDDI 402
RY K + T +G++G+ G GK++++ + + + D++
Sbjct: 8 RY--KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEV 65
Query: 403 DTEDVPLSKLRSN-ISIIPQDPV------------------LFSGTLRKNLDPFEKYPDY 443
L + R I ++ GT+ + L ++
Sbjct: 66 ------LKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---- 115
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
EV + + M N S G Q + +A +++R + + D+ ++
Sbjct: 116 --RGKKDEV-KELLNMTNL-WNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPSS 167
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+D + + + + IR+ + V+ + H L + +D + ++ +V
Sbjct: 168 YLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 6e-17
Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 27/240 (11%)
Query: 314 EYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIV 373
E K+ P+ E + K + + T + G + N E IGI+
Sbjct: 241 ENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGIL 300
Query: 374 GRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDVPLSKLRSNISIIPQDPV--LFSGT 429
G G GK++ + G I D + E LS I V
Sbjct: 301 GPNGIGKTTFARIL------VGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489
+ L + + V + + L + L V + S G+ Q + +A +
Sbjct: 355 SKDALSTSSWFFEEVT----KRLNLHRL------LESNVND----LSGGELQKLYIAATL 400
Query: 490 VRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMD 546
+ + VLD+ ++ +D + ++ + I++ + I H L +D+++V
Sbjct: 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 9e-15
Identities = 44/219 (20%), Positives = 100/219 (45%), Gaps = 23/219 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+ ++ R ++K ++ I E G++G GAGK++ + I L + G++ +
Sbjct: 16 VVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+ + P ++R IS +P++ + + L + Y A E+++M+
Sbjct: 75 FGKNVVEEPH-EVRKLISYLPEEAGAYRNMQGIEYLRFVAGF--Y----ASSSSEIEEMV 127
Query: 459 ---MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
E AGL + + + +S G + + +ARA++ N + +LDE T+ +D +++
Sbjct: 128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187
Query: 516 TIRK-KFADCTVLTIAHRLHTIMD-----SDKVLVMDSG 548
+++ T+L +H M D++ ++ +G
Sbjct: 188 ILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNG 222
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 3e-13
Identities = 64/420 (15%), Positives = 127/420 (30%), Gaps = 136/420 (32%)
Query: 225 VEEFDYH-QDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGL--A 281
E Y +D+ L V+ + A++ +F C + + S +I + A
Sbjct: 11 TGEHQYQYKDI------LSVFED---AFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDA 60
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIW------ 335
V+ T+ L W + E V++ VE L NY+ +
Sbjct: 61 VSGTLRLF----WTLLSKQEE-----MVQKFVE-------EVLRINYK-----FLMSPIK 99
Query: 336 -----PVLGKIEFQNTNVRYLSGPRVIKNLNITIH--------------PKEKIGIVGRT 376
P + + R + +V N++ P + + I G
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 377 GAGKSSLIAAIFRLAEVE-----GV--IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGT 429
G+GK+ + + +V+ + + + + ++ + L L+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---------------K 204
Query: 430 LRKNLDP-FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488
L +DP + D+ L+ ++ + R+L+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---------------------RRLLKSKP- 242
Query: 489 IVRNNVILVLDEATANV-DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMD 546
N +LVL NV + K F C +L + R + D +
Sbjct: 243 --YENCLLVLL----NVQNAK--------AWNAFNLSCKIL-LTTRFKQVTDF--LSAAT 285
Query: 547 SGVAVVSSFGFFFSKDLIEGTVSAKVLSSRK---RREKEDR-------IGESQSFRERTS 596
+ + + D ++ + K L R RE I E S R+ +
Sbjct: 286 TTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLA 342
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 3e-09
Identities = 91/647 (14%), Positives = 186/647 (28%), Gaps = 209/647 (32%)
Query: 53 QHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSP-- 110
HHH H+ + I+ +F + + K+ + ++ S
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 111 -------LAFFSTNPSGRILNRFSKDMGAVDEVLPKA---MLDAAQGV-MQVSGALIVSL 159
+ ++ +F V+EVL ++ + Q S + +
Sbjct: 61 VSGTLRLFWTLLSKQE-EMVQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 160 S-VNPLFSIPVLILLYLFWRLSKAY-LRTS-KSLKYLEGVTRSPVFTHLNACLHGLPTIR 216
+ L++ + Y RL LR + L+ + V + G+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-----------IDGVL--- 159
Query: 217 AHGAAK-ILVEE----------FDYH-------------------QDLH----------- 235
G+ K + + D+ Q L
Sbjct: 160 --GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 236 SSTWHLFVYTNMGFAYLIDFL-------CLLYL-----STILISFFFFADIGGKVGLAVT 283
+ ++ + + A L L CLL L + +F ++ K+ L T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKI-LLTT 272
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343
+ + + A H+ + T E + +L K
Sbjct: 273 RFKQVTDFLS------AATTTHISLDHHSMTLTPDEVKS--------------LLLKY-- 310
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403
+ R PR + T +P + S+IA R D +
Sbjct: 311 --LDCRPQDLPREVL----TTNP---RRL---------SIIAESIR----------DGLA 342
Query: 404 T----EDVPLSKLRSNI--SIIPQDPVLFSGTLRKNLDPFEKYPDYV---------LWTA 448
T + V KL + I S+ +P + RK D +P +W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD---EATANV 505
+ + ++ ++ + +S+ ++Q + + I + E +
Sbjct: 399 VIKSDVMVVVNKLH-----------KYSLVEKQ--------PKESTISIPSIYLELKVKL 439
Query: 506 DPKTDL---LIQR-TIRKKF--ADCTVLT--------IAHRLHTIMDSDKVLVMDSGVAV 551
+ + L ++ I K F D I H L I +++ + V
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---V 496
Query: 552 VSSFGFFFSK---DLIEGTVSAKVLSSRKRREK-EDRIGESQSFRER 594
F F K D S +L++ ++ + + I ++ ER
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 39/249 (15%), Positives = 75/249 (30%), Gaps = 24/249 (9%)
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343
++ W + + K + + + G+
Sbjct: 378 IDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLC 437
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403
++ + + + GI G G GKS+L+ AI +V+G ++
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-GQVDGFPTQEECR 496
Query: 404 TEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG 463
+ D D+V + + E + G
Sbjct: 497 ------------TVYVEHDIDGTHSDTSVL--------DFVFESGVGTKEAIKDKLIEFG 536
Query: 464 LNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522
+ S G + + LARA++RN IL+LDE T ++D + +
Sbjct: 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC-- 594
Query: 523 DCTVLTIAH 531
T +TI+H
Sbjct: 595 GITSITISH 603
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 25/216 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPL 409
+ + ++I+++ + I+G G+GKS+L I + E G + ++ D +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEP 76
Query: 410 SKL-RSNISIIPQDPVLFSG-TLRKN-LDPFEKYPDYVLWTAL------QEVELKDM--- 457
++L I Q P T+ +N L + L + +E E+ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDL--LI 513
I+E L+ S GQ +L+ + RA++ N ++V+DE A V P D+ +
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
++ K T L I HRL +++ D + VM +G
Sbjct: 197 LE-LKAK--GITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 86/288 (29%)
Query: 340 KIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
+I +N + + G + N+NI I E+ GI+G +GAGK++ + I L G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 398 KIDDIDTEDVPLSKLRS---NISIIPQ-----------DPVLFSGTLRKNLDPFEKYPDY 443
DD + I ++ Q + + F T K
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK----------- 111
Query: 444 VLWTALQEVELKDMIMEGAG-LNMTVYE--------GGTNFSVGQRQLICLARAIVRNNV 494
+ + E++ + E A L++ G Q+Q + LARA+V++
Sbjct: 112 -----MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA------QQQRVALARALVKDPS 160
Query: 495 ILVLDEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SD 540
+L+LDE +N+D + + R +++ + RL + D +D
Sbjct: 161 LLLLDEPFSNLDAR--MRDSARALVKE---------VQSRLGVTLLVVSHDPADIFAIAD 209
Query: 541 KVLVMDSGVAV------------VSSF--GFFFSKDLIEGTVSAKVLS 574
+V V+ G V VS + +EG V+ + +
Sbjct: 210 RVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVV 257
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
I+ + G V+K +N+ I E + ++G +G+GKS+ + + L + EG I
Sbjct: 25 IDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 399 ID--DIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK 455
ID ++ +D L+K+R + ++ Q LF T+ N+ P V ++ E K
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI---TLAPMKVRKWPREKAEAK 139
Query: 456 DM-IMEGAGLN--MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
M +++ GL Y + S GQ Q + +ARA+ I++ DE T+ +DP
Sbjct: 140 AMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 52/235 (22%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL--IAAIFRLAEVEGVIK 398
IEF Y G R ++ ++ I E +G++G +G+GK+++ + A +G +
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVW 73
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---------KYPDYVLWTAL 449
I D+P K R N+ ++ Q+ LF +++ ++ + P
Sbjct: 74 IGGKRVTDLPPQK-R-NVGLVFQNYALF-----QHMTVYDNVSFGLREKRVP-------- 118
Query: 450 QEVELKDMIMEGAGL-NMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+ E+ + E + Y S GQ+Q + LARA+ +L+ DE A +D
Sbjct: 119 -KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 507 PKTDLLIQRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDSGV 549
+ ++ +R+ + + ++ D +D+VLV+ G
Sbjct: 178 TQIRRELRTFVRQ---------VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 4e-06
Identities = 38/170 (22%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 342 EFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
E Q+ +V Y G IK +++ + + + ++G GAGK++ ++AI L + G I
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 400 DDIDTEDVPLSKL-RSNISIIPQDPVLFSG-TLRKNLD--PFEKYPDYVLWTALQEV--- 452
+ D + P + R I+++P+ +F T+ +NL + + + L+ +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 453 --ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
LK+ + + G S G++Q++ + RA++ +L++DE
Sbjct: 126 FPRLKERLKQLGGT----------LSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 4e-06
Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKI 399
+ +N ++K +++++ E + I+G +G+GKS+L+ + L A EG + +
Sbjct: 5 LRAENIKKVIRGY-EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 400 DDIDTE---DVPLSKLRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455
+ + + + LS LR+ + + Q L P TAL+ V +
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQ---------FHYLIPEL--------TALENVIVP 106
Query: 456 DMI---------------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
+ + GL + S G++Q + +ARA+ ++L DE
Sbjct: 107 MLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 501 ATANVDPKT 509
T N+D
Sbjct: 167 PTGNLDSAN 175
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 71/245 (28%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+I+ +N ++ + N+N+ I E + ++G +G+GKS+L+ I + + G I
Sbjct: 3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
D+ D ++P K R N+ ++ Q+ L F LRK
Sbjct: 62 FDEKDVTELP-PKDR-NVGLVFQNWALYPHMTVYKNIAFPLELRK--------------- 104
Query: 448 ALQEVELKDMIMEGAG-LNMTVY--------EGGTNFSVGQRQLICLARAIVRNNVILVL 498
E+ + E A L++ GG Q+Q + +ARA+V+ +L+L
Sbjct: 105 -APREEIDKKVREVAKMLHIDKLLNRYPWQLSGG------QQQRVAIARALVKEPEVLLL 157
Query: 499 DEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SDKVLV 544
DE +N+D L ++ R +++ + L D +D++ V
Sbjct: 158 DEPLSNLDAL--LRLEVRAELKR---------LQKELGITTVYVTHDQAEALAMADRIAV 206
Query: 545 MDSGV 549
+ G
Sbjct: 207 IREGE 211
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 44/196 (22%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGV 396
++ +N Y G +KN+N+ I E + I+G +G+GKS+++ I L EG
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 397 IKIDDIDTEDVP---LSKLRSN-ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+ ID+I T D+ L+K+R + I + Q + NL P TAL+ V
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIPLL--------TALENV 104
Query: 453 ELKDMIMEGAGLNMT--------------VYEGGTNF-----SVGQRQLICLARAIVRNN 493
EL + ++ + E N S GQ+Q + +ARA+ N
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 494 VILVLDEATANVDPKT 509
I++ D+ T +D KT
Sbjct: 165 PIILADQPTWALDSKT 180
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 71/245 (28%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+++ +N R+ + LN+TI E + ++G +G GK++ + I L E EG I
Sbjct: 11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
D D +P K R NIS++ Q + F ++K
Sbjct: 70 FGDRDVTYLP-PKDR-NISMVFQSYAVWPHMTVYENIAFPLKIKK--------------- 112
Query: 448 ALQEVELKDMIMEGAG-LNMTVY--------EGGTNFSVGQRQLICLARAIVRNNVILVL 498
+ E+ + A L + GG QRQ + +ARAIV +L++
Sbjct: 113 -FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGG------QRQRVAVARAIVVEPDVLLM 165
Query: 499 DEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SDKVLV 544
DE +N+D K L + R I+K + +L D D++ V
Sbjct: 166 DEPLSNLDAK--LRVAMRAEIKK---------LQQKLKVTTIYVTHDQVEAMTMGDRIAV 214
Query: 545 MDSGV 549
M+ G
Sbjct: 215 MNRGQ 219
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 359 NLNITIHP-KEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNI 416
LN+ ++ ++G TGAGKS + I + + G ++++ D +P + R I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-R-GI 72
Query: 417 SIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYEG-- 471
+PQD LF ++ +N+ VE + E A +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVE---------RVERDRRVREMAEKLGIAHLLDRK 123
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTI 529
S G+RQ + LARA+V +L+LDE + VD KT ++ +R + D +L +
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 530 AHRLHTIMD-SDKVLVMDSGV 549
H L +D+V VM +G
Sbjct: 184 THDLIEAAMLADEVAVMLNGR 204
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 71/245 (28%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
I N + + + ++ + E + ++G +G GK++ + + + + G I
Sbjct: 3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
DD+ D+P K R + ++ Q+ L F R+
Sbjct: 62 FDDVLVNDIP-PKYR-EVGMVFQNYALYPHMTVFENIAFPLRARR--------------- 104
Query: 448 ALQEVELKDMIMEGAG-LNMTVY--------EGGTNFSVGQRQLICLARAIVRNNVILVL 498
+ + E++ ++E A L + GG Q+Q + LARA+V+ +L+
Sbjct: 105 -ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGG------QQQRVALARALVKQPKVLLF 157
Query: 499 DEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SDKVLV 544
DE +N+D L + R I+ + L D + ++ V
Sbjct: 158 DEPLSNLDAN--LRMIMRAEIKH---------LQQELGITSVYVTHDQAEAMTMASRIAV 206
Query: 545 MDSGV 549
+ G
Sbjct: 207 FNQGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 50/240 (20%), Positives = 98/240 (40%), Gaps = 67/240 (27%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
IE ++ + ++ + NL++ + E I+G TGAGK+ IA F + + G I
Sbjct: 2 IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRI 57
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFS----------GTLRKNLDPFEKYPDYVLWT 447
+D D D+ K +I+ + Q+ LF G K + ++ VL
Sbjct: 58 LLDGKDVTDLSPEK-H-DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR----VLD- 110
Query: 448 ALQEVELKDMI------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
++++++ ++ + G G++Q + LARA+V N IL+LDE
Sbjct: 111 TARDLKIEHLLDRNPLTLSG----------------GEQQRVALARALVTNPKILLLDEP 154
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDSGV 549
+ +DP+T + + + + + D +D++ V+ G
Sbjct: 155 LSALDPRTQENAREMLSV---------LHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 597 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.95 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.94 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.9 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.89 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.88 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.88 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.87 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.87 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.87 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.85 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.85 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.83 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.82 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.81 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.81 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.8 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.78 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.77 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.76 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.76 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.76 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.74 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.74 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.73 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.73 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.73 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.73 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.73 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.73 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.72 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.71 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.69 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.69 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.68 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.68 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.66 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.66 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.65 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.62 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.62 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.6 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.6 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.58 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.58 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.57 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.54 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.52 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.48 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.42 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.42 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.42 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.37 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.37 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.36 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.35 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.35 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.34 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.25 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.25 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.23 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.23 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.23 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.22 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.16 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.14 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.13 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.09 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.06 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.06 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.05 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.0 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.95 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.93 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.92 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.9 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.85 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.85 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.84 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.83 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.81 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.8 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.79 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.78 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.77 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.77 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.76 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.75 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.74 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.69 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.66 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.62 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.55 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.54 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.46 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.45 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.43 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.41 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.41 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.34 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.33 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.31 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.3 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.27 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.26 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.25 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.23 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.23 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.15 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.15 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.14 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.09 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.0 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.98 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.94 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.92 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.92 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.89 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.86 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.84 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.82 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.8 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.78 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.76 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.73 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.7 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.69 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.62 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.59 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.59 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.55 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.54 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.51 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.51 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.48 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.45 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.42 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.4 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.39 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.36 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.35 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.35 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.32 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.29 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.29 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.28 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.28 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.24 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.24 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.22 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.2 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.18 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.15 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.11 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.09 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.07 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.06 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.05 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.98 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.98 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.98 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.86 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.85 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.83 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.83 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.79 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.78 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.76 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.72 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.7 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.7 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.67 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.62 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.62 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.61 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.61 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.6 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.57 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.56 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.54 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.52 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.5 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.5 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.48 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.47 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.47 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.45 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.44 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.43 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.41 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.37 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.36 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.36 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.35 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.34 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 96.34 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.33 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.3 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.3 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.3 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.27 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.26 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.24 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.24 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.21 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.21 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.2 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.18 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.15 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.04 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.02 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.0 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.99 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.99 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.98 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.98 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.97 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.93 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.91 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.89 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.88 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.87 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.86 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 95.82 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.78 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.77 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.77 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.74 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.72 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.71 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.71 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.69 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.65 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.64 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.64 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.63 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.63 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.62 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.62 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.62 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.62 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.61 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.61 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.6 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.6 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.59 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.59 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.59 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.58 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.57 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.57 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.56 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.54 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.53 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.53 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.52 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.52 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.51 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.51 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.49 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.49 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.48 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.47 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.47 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.46 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.46 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.44 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.44 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.44 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.42 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.42 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.41 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.4 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.37 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.37 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.32 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.32 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.32 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.31 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.31 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.29 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.27 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.26 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.26 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.26 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.25 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.24 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.23 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.22 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 95.21 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.21 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.2 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.18 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.17 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.17 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.16 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.13 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.11 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.11 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.09 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.08 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.08 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.07 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.07 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.06 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.03 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.03 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 95.02 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.01 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.96 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.95 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.95 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.94 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.93 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.92 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.92 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.91 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.91 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.9 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.88 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.88 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.87 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.87 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.86 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.85 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.85 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.85 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.84 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.83 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.82 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 94.82 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.82 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.82 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.81 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.8 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.8 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.79 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.79 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.75 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.74 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.73 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.72 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.72 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.72 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.71 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.7 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.69 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.68 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.68 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.67 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.67 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.66 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.64 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.63 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.62 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.61 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.6 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.59 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.59 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.58 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.58 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.58 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.57 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.56 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.56 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.54 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.53 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.51 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.49 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 94.48 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.47 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.46 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.46 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.45 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.45 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.45 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.45 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.45 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.41 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.4 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.39 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.35 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.32 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.31 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.3 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.29 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.29 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.28 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.21 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.2 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.14 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.14 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.12 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.07 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 94.06 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.05 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.04 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.01 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.0 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.93 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.92 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.91 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.85 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 93.83 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.79 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.77 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.76 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.73 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.67 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 93.61 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 93.6 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 93.53 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 93.51 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.49 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.44 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 93.44 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-93 Score=864.54 Aligned_cols=499 Identities=21% Similarity=0.278 Sum_probs=426.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDA 144 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~ 144 (597)
+++.+++++++..++++++.+++.++++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++.+.+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH
Q psy1502 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224 (597)
Q Consensus 145 i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~ 224 (597)
+..+++++++++++++++|.+++++++.+++..++...+.+..++..+......+++.+.+.|.++|+++||+||.|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999998888777777666666666666665555666677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 VEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAA 300 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 300 (597)
.++|.+..++..+...+.............++..+..+++ .++.... .++.|.+.+++.++..+..++..+...+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776555433322222222222222222211111 1112121 23556677777777788888888888999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCC
Q psy1502 301 EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGA 378 (597)
Q Consensus 301 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGs 378 (597)
.++.+.++++|++++++.+++.+.... ......+..|+|+|+||+|+||+ ++++|+|+||+|++|+++||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 455 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSK--AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSS--CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccc--ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCC
Confidence 999999999999999987665332211 11222344678999999999975 45899999999999999999999999
Q ss_pred CHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHH
Q psy1502 379 GKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKD 456 (597)
Q Consensus 379 GKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~ 456 (597)
|||||+++|+|+|+ .+|+|++||+|+++++.++||++||||||+|+||+|||||||++|. ++++|++++||+.|++++
T Consensus 456 GKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535 (1321)
T ss_dssp CHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchh
Confidence 99999999999995 6899999999999999999999999999999999999999999985 689999999999999999
Q ss_pred HHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 457 MIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 457 fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
||+.+ +||||.|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|+++.++||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 536 IMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 536 i~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
+++||+|+||++|+|+| +++|.|++++..+
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q 653 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhh
Confidence 99999999999999999 6799999999754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-93 Score=864.92 Aligned_cols=502 Identities=19% Similarity=0.235 Sum_probs=396.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc--cChhHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFST--NPSGRILNRFSKDMGAVDEVLPKA 140 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~sG~l~~rit~D~~~i~~~~~~~ 140 (597)
..+.+.|+++.++..++.+++.++....+.++..++|.++|++++++|++||+. +++|++++|+++|++.++..+...
T Consensus 794 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~ 873 (1321)
T 4f4c_A 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFR 873 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHH
Confidence 345566777777778888899999999999999999999999999999999985 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhch
Q psy1502 141 MLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA 220 (597)
Q Consensus 141 ~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~ 220 (597)
+..++..++.++++++++++++|+++++++++++++++....+.+..+..........++....+.|+++|+++||+|+.
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 953 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccc
Confidence 99999999999999999999999999888877776665554443322211111122334556788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---H--hhhhHHHHHHHHHHHHHHHHHH
Q psy1502 221 AKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST-ILISFFFF---A--DIGGKVGLAVTQTMTLMGVVQW 294 (597)
Q Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~--~~~g~i~~~~~~~~~~~~~~~~ 294 (597)
|+++.++|.+..+...+...+......+...+...+..+...+ +.++.... . ...+.+..++.+......++..
T Consensus 954 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1033 (1321)
T 4f4c_A 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGF 1033 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877655443332222221111111111111111 11111111 0 1111111112222222345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEE
Q psy1502 295 AMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGI 372 (597)
Q Consensus 295 ~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaI 372 (597)
+...+..+..+..+++|++++++.+++.+... .+++.++..|+|+|+||+|+||++ .+||+||||+|+|||+|||
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLS---LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC---CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc---CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence 66777888999999999999998766543222 233445677899999999999754 3799999999999999999
Q ss_pred EcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC---CCCChHHHHHH
Q psy1502 373 VGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF---EKYPDYVLWTA 448 (597)
Q Consensus 373 VG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~---~~~~~e~i~~a 448 (597)
|||||||||||+++|+|||+ ++|+|+|||+|++++++++||++|+||||||+||+|||||||++| ++++|+|+++|
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~A 1190 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEA 1190 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHH
T ss_pred ECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHH
Confidence 99999999999999999995 689999999999999999999999999999999999999999987 36899999999
Q ss_pred HHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q psy1502 449 LQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527 (597)
Q Consensus 449 ~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI 527 (597)
|+.|+++|||+++ +||||.|||+|.+|||||||||||||||+|||+||||||||||||++||+.||++|++.+++||+|
T Consensus 1191 l~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI 1270 (1321)
T 4f4c_A 1191 ARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCI 1270 (1321)
T ss_dssp HHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEE
T ss_pred HHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcc
Q psy1502 528 TIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGT 567 (597)
Q Consensus 528 ~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~ 567 (597)
+|||||+|+++||+|+|||+|+|+| +++|.|++||+.+..
T Consensus 1271 ~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1271 VIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp EECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred EeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999999999999999 678999999986543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-87 Score=756.43 Aligned_cols=529 Identities=24% Similarity=0.326 Sum_probs=439.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
.+.+++.+..|.++..+++....... ......+++.++++.++..++.+++.++....+.++..++|.++|++++++
T Consensus 47 ~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 123 (598)
T 3qf4_B 47 TVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRV 123 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34456777778778888887654321 111233445555566666778888888889999999999999999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|++||+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..++
T Consensus 124 ~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 203 (598)
T 3qf4_B 124 PVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRK 203 (598)
T ss_dssp CTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777777776677666666
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-LISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 268 (597)
..+......+++.+.+.|.++|+++||+||.|+.+.++|++..++..+...+......+......++..+..+++ +++.
T Consensus 204 ~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 283 (598)
T 3qf4_B 204 YFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGG 283 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655556666778899999999999999999999999999988776655444333333333333333322222221 1222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEe
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~n 345 (597)
+.. .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+.+. ....++..++|+++|
T Consensus 284 ~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~i~~~~ 359 (598)
T 3qf4_B 284 WLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD----AVELREVRGEIEFKN 359 (598)
T ss_dssp HHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS----CCCCCSCCCCEEEEE
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CCCCCCCCCeEEEEE
Confidence 111 2345666666666667788889999999999999999999999998766532111 111223457899999
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
|+|+|++++++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 360 v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp EECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred EEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 99999766789999999999999999999999999999999999995 68999999999999999999999999999999
Q ss_pred CCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 425 LFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 425 LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
+|++||+|||.++. +.++++++++++.++++++++.+ +||||.+||+|.+||||||||+||||||+++|+||||||||
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999999999874 57889999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|+||+++|+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|++++..+
T Consensus 520 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 590 (598)
T 3qf4_B 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590 (598)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999998 5678888888644
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-86 Score=746.49 Aligned_cols=542 Identities=21% Similarity=0.270 Sum_probs=436.2
Q ss_pred hhHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 18 TREEYRQFEI----LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMR 93 (597)
Q Consensus 18 ~~~~~~~~~~----~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (597)
+...||...+ +..+.+++.+..|.++..+++........ .....+.+.++++.++..++.+++.++..+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (587)
T 3qf4_A 17 YLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF---SLVLKTGILMLIVALIGAVGGIGCTVFASYASQN 93 (587)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554333 33445567777788888888876543210 1112223334444555566777788888889999
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 94 CSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL 173 (597)
Q Consensus 94 ~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~ 173 (597)
+..++|.++|++++++|+.||+++++|++++|+++|++.+++++...+..++..++.++++++++++++|.+++++++++
T Consensus 94 ~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~ 173 (587)
T 3qf4_A 94 FGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLI 173 (587)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 174 YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLI 253 (597)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (597)
++++++..++.+..++..+......+++.+.+.|.++|+++||+|+.|+++.++|.+..+...+................
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (587)
T 3qf4_A 174 PPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLF 253 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666655666555555555555667788999999999999999999999999999887766554333222222222222
Q ss_pred HHHHHHHHH-HHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy1502 254 DFLCLLYLS-TILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYE 329 (597)
Q Consensus 254 ~~~~~~~~~-~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 329 (597)
.++...... ++.++.... .++.|.+.+++.++..+..++..+...+..++++.++++|+.++++.+++.+....
T Consensus 254 ~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-- 331 (587)
T 3qf4_A 254 IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN-- 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC--
Confidence 222211111 111122111 23456677777777788888888888899999999999999999987654322111
Q ss_pred CCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCC
Q psy1502 330 DENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV 407 (597)
Q Consensus 330 ~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~ 407 (597)
+...++..+.|+|+||+|+|++ .+++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|++++
T Consensus 332 -~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 -ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp -CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred -ccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 1111234578999999999964 5679999999999999999999999999999999999995 689999999999999
Q ss_pred ChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 408 PLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+.+++|++|+||||+|++|++||+|||.++. +.++++++++++.++++++++.+ +|+||.+||+|.+||||||||++|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999874 68899999999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCch
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGF 557 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~ 557 (597)
||||+++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+| ++++.
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 570 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKP 570 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999999999999989999999999999999999999999999998 45677
Q ss_pred hHhhHhhh
Q psy1502 558 FFSKDLIE 565 (597)
Q Consensus 558 y~~l~~~~ 565 (597)
|++++..+
T Consensus 571 ~~~~~~~~ 578 (587)
T 3qf4_A 571 YREIYESQ 578 (587)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887644
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-86 Score=745.38 Aligned_cols=531 Identities=20% Similarity=0.249 Sum_probs=429.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 31 DTAFVEMYGRSTFFKIVNNTINQHHHFHLLST----ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 31 ~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~----~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
+.+++.+..|.++..+++..+........... ..+...++++.++..++.+++.+...+.+.++..++|.++|+++
T Consensus 25 ~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 104 (578)
T 4a82_A 25 IKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHL 104 (578)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888876643211000001 11122222333344566777788888899999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|++||+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++++++++++...+.+.
T Consensus 105 l~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~ 184 (578)
T 4a82_A 105 QALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR 184 (578)
T ss_dssp HHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999988877777666666666666
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TIL 265 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 265 (597)
.++..+......+++.+.+.|.++|+++||+||.|+.+.++|++..++..+...+..............+..+... ++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 264 (578)
T 4a82_A 185 LRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIG 264 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555666677888999999999999999999999999999887765544333322222222222222221111 111
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 266 ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 266 ~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++.... .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+.... ..+..+..+.|+
T Consensus 265 ~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~i~ 341 (578)
T 4a82_A 265 VGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG---AQPIEIKQGRID 341 (578)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTT---CCCCCCCSCCEE
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC---ccccCCCCCeEE
Confidence 122111 24566777777777888889999999999999999999999999987654322111 111123457899
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|||||
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 9999999975 4679999999999999999999999999999999999985 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|++||+|||.++. +.++++++++++.++++++++.+ +|+||.+||+|.+||||||||++||||++++|+||||
T Consensus 422 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illl 501 (578)
T 4a82_A 422 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 501 (578)
T ss_dssp SSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999864 57889999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
|||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|+++|..
T Consensus 502 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~ 575 (578)
T 4a82_A 502 DEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575 (578)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred ECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 999999999999999999999988999999999999999999999999999998 456777777754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-85 Score=732.72 Aligned_cols=527 Identities=20% Similarity=0.281 Sum_probs=434.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESY-IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.+.+++.+..|.++..+++....... . ....+ ...++++.++..++.+++.++....+.++..++|.++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~id~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 110 (582)
T 3b5x_A 35 VINAAADTYMISLLKPLLDEGFGNAE-S---NFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMH 110 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456667777777777776553211 0 11111 1223344455567777788888889999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|++||+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 111 ~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 190 (582)
T 3b5x_A 111 MPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFR 190 (582)
T ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887777766666666666656
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTIL-IS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 267 (597)
+..+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...+......+......++..+...+++ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555566677888999999999999999999999999999888776655444443334333344433322222211 12
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+. .. .+.++..+.|+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-~~----~~~~~~~~~i~~~ 345 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN-GK----YEAERVNGEVDVK 345 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-CC----CCCCCCCCeEEEE
Confidence 2221 34567777888888888999999999999999999999999999986654321 10 1111234679999
Q ss_pred eeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||+
T Consensus 346 ~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 999999753 679999999999999999999999999999999999985 789999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 423 PVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|.+|++|++|||.++. +.++++++++++.++++++++.+ +||||.+||+|.+||||||||++|||||+++|+|||||
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD 505 (582)
T 3b5x_A 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505 (582)
T ss_pred CccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999864 57889999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +.++.|++++..+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b5x_A 506 EATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998 4466777777643
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-85 Score=732.81 Aligned_cols=527 Identities=22% Similarity=0.303 Sum_probs=432.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESY-IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.+.+++.+..|.++..+++....... . ....+ ...++++.++..++.+++.+.....+.++..++|.++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~id~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 110 (582)
T 3b60_A 35 ILNAASDTFMLSLLKPLLDDGFGKTD---R-SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMG 110 (582)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSTTSTT---H-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445666666666677765543211 0 01111 1223344455566777788888889999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|++||+++++|++++|+++|++.++.++...+..++..++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 111 ~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 190 (582)
T 3b60_A 111 MPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFR 190 (582)
T ss_dssp CCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777766666666666666
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-S 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 267 (597)
+..+......+++.+.+.|.++|+++||+||.|+++.++|.+..++..+...+......+......++..+...+++. +
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555666778889999999999999999999999999999887766655444444444444444333222222111 1
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+. .. .+.++..+.|+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-~~----~~~~~~~~~i~~~ 345 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE-GK----RVIDRATGDLEFR 345 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC-CC----BCCSCCCCCEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-CC----CCCCCCCCcEEEE
Confidence 1111 24567777778888888999999999999999999999999999987654321 11 1111234679999
Q ss_pred eeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|.+||+|+++++.+++|++|+||||+
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSS
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccC
Confidence 999999743 679999999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 423 PVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|.+|++|++|||.++. +.++++++++++.++++++++.+ +||||.+||+|.+||||||||++|||||+++|+|||||
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD 505 (582)
T 3b60_A 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_dssp CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999999864 57889999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +.++.|++++..+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998 3456677776543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-84 Score=784.78 Aligned_cols=499 Identities=22% Similarity=0.281 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDA 144 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~ 144 (597)
+.+.|+++.++..++.+++.++..+++.++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH
Q psy1502 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224 (597)
Q Consensus 145 i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~ 224 (597)
+..+++++++++++++++|++++++++++++++++..++.+..++..+......+++.+.+.|+++|+++||+||.|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999998888888877777777776666666566666777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 VEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAA 300 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 300 (597)
.++|++..+...+...+.............++.....+ ++.++.... .++.|.+.+++.++.....++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887776554332222112112222222211111 111111111 22345454444455555667777888888
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCC
Q psy1502 301 EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGA 378 (597)
Q Consensus 301 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGs 378 (597)
.++.+.++++|++++++.+++.+.... ......+..|.|+|+||+|+|+++ +++|+|+||+|++||++||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSK--SGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCS--SCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccc--cCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCC
Confidence 999999999999999987654322111 111112346789999999999753 4799999999999999999999999
Q ss_pred CHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHH
Q psy1502 379 GKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKD 456 (597)
Q Consensus 379 GKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~ 456 (597)
|||||+++|+|+|+ ++|+|.+||+|+++++++++|++||||||+|+||++||+|||.++. +.+++++++|++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999995 6899999999999999999999999999999999999999999864 689999999999999999
Q ss_pred HHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 457 MIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 457 fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
+++.+ +||||.+||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.+++..+++|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99998 99999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 536 IMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 536 i~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
+++||+|+||++|+|+| +.+|.|++++..+
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 625 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQ 625 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHT
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHh
Confidence 99999999999999998 5678899888644
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-79 Score=734.21 Aligned_cols=497 Identities=18% Similarity=0.247 Sum_probs=396.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc--ccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFS--TNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
+...++++.++..++.+++.++..+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+.
T Consensus 751 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~ 830 (1284)
T 3g5u_A 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777788888889999999999999999999999999999 589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..++.+++.++++++++|.+++++++++++++++.....+..+..........+.....+.|+++|+++||+|+.++
T Consensus 831 ~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~ 910 (1284)
T 3g5u_A 831 VIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999998877776666555444444333333322333334455678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------HhhhhHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTIL-ISFFFF------ADIGGKVGLAVTQTMTLMGVVQWA 295 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~g~i~~~~~~~~~~~~~~~~~ 295 (597)
++.++|.+..+...+...... .+......+.........+ ..++.. ....+.+..++.+......++..+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1284)
T 3g5u_A 911 KFETMYAQSLQIPYRNAMKKA---HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQV 987 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887765443322211 1111111111111111111 111111 112333444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEE
Q psy1502 296 MRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIV 373 (597)
Q Consensus 296 ~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIV 373 (597)
...+..+..+..+++|+.++++.+++...... .....++..|.|+|+||+|+|++. .++|+|+||+|++||++|||
T Consensus 988 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~iv 1065 (1284)
T 3g5u_A 988 SSFAPDYAKATVSASHIIRIIEKTPEIDSYST--QGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065 (1284)
T ss_dssp TSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCS--SCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccccccc--ccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEE
Confidence 55555677889999999999887654322111 111122346789999999999753 47999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC---CCChHHHHHHH
Q psy1502 374 GRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDYVLWTAL 449 (597)
Q Consensus 374 G~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e~i~~a~ 449 (597)
||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. ..+++++++++
T Consensus 1066 G~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~ 1145 (1284)
T 3g5u_A 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145 (1284)
T ss_dssp CSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHH
Confidence 9999999999999999995 6899999999999999999999999999999999999999998863 47899999999
Q ss_pred HHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy1502 450 QEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528 (597)
Q Consensus 450 ~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 528 (597)
+.+++++++..+ +||||.|||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.|++..+++|+|+
T Consensus 1146 ~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~ 1225 (1284)
T 3g5u_A 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225 (1284)
T ss_dssp HHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred HHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 529 IAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 529 IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
||||++++++||||+||++|+|+| +++|.|++||+.+.
T Consensus 1226 isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1226 IAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQA 1271 (1284)
T ss_dssp ECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC
T ss_pred EecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999999999 67899999998554
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-67 Score=539.84 Aligned_cols=264 Identities=30% Similarity=0.487 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCC
Q psy1502 300 AEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAG 379 (597)
Q Consensus 300 ~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsG 379 (597)
..++.+.++++|++++++.+++...... .....+..+.|+|+||+|+|++++++|+||||+|++||++|||||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPG---AGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTT---CBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred hhHHHHHHHHHHHHHHHhCCcccccccc---ccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 4566778899999999876544321111 1111123568999999999976678999999999999999999999999
Q ss_pred HHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHH
Q psy1502 380 KSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDM 457 (597)
Q Consensus 380 KSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~f 457 (597)
||||+++|+|+|+ ++|+|.+||+|+.+++...+|++||||||+|+||++||+|||.++. ..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 9999999999995 7899999999999999999999999999999999999999999875 5788999999999999999
Q ss_pred HHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 458 IMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 458 I~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+..+ +||+|.+|++|.+|||||||||||||||+++|+|||||||||+||++++..|++.|.++.+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 537 MDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 537 ~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
..||+|+||++|+|++ +.+|.|+++|..+.
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 9999999999999998 56788999997543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=442.77 Aligned_cols=214 Identities=36% Similarity=0.511 Sum_probs=201.8
Q ss_pred ccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.+|+++||+|+|+ +++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4699999999994 3567999999999999999999999999999999999998 4789999999999999888899999
Q ss_pred EEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||||+|.+|++|++||+.++. ..+++++.++++.+++.+++..+ .|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999863 45678899999999999999987 899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 223 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998877899999999999998899999999999987
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-55 Score=442.34 Aligned_cols=214 Identities=31% Similarity=0.492 Sum_probs=201.2
Q ss_pred ccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+.|+++||+|+|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++++|+|.+||.|+.+.+...+|++|
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 459999999999653 469999999999999999999999999999999999987799999999999988888899999
Q ss_pred EEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||||+|.+|++|++|||.++. ..+++++.++++.+++.+++..+ +|++|.+++.+.+||||||||++|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998753 45677889999999999999888 999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||||+||+.++..+.+.|.++.+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVE 233 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999877899999999999998899999999999987
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=440.44 Aligned_cols=212 Identities=32% Similarity=0.531 Sum_probs=199.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+|++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 789999999964567999999999999999999999999999999999998 5789999999999988877889999999
Q ss_pred eCCCCCCCccHHhhcccC--CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLFSGTLRKNLDPF--EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~--~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||++.+|++|++|||.++ ...+++++.++++.+++.+++..+ .|+++.+++.+.+||||||||++|||||+++|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986 346678899999999999988887 89999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||+||+.++..+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999998877899999999999998999999999999986
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=436.23 Aligned_cols=214 Identities=28% Similarity=0.418 Sum_probs=198.1
Q ss_pred ccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcC
Q psy1502 339 GKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~ 415 (597)
+.|+++||+|+|++ .+++|+||||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 257999999999999999999999999999999999998 578999999999998888888999
Q ss_pred cEEEeCCCCCCCccHHhhcccCC-CCCh-HHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFE-KYPD-YVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~-~~~~-e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+||||++.+|++|++|||.++. ..++ +++.++++.+++.++++.+ +|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998853 3344 6778888888999999988 7999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|+|||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|+|++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCE 236 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998864 799999999999998899999999999987
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-54 Score=454.30 Aligned_cols=218 Identities=36% Similarity=0.724 Sum_probs=206.9
Q ss_pred CCCcccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHh
Q psy1502 335 WPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 335 ~~~~~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr 413 (597)
|+..+.|+++||+++|+ ++.++|+||||+|++||+++|+||||||||||+++|+|+++++|+|.+||+|+.+++...+|
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHh
Confidence 45567899999999996 35679999999999999999999999999999999999988889999999999999999999
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++|+||||++.+|++|++||+.+.....+++++++++.+++.++.... .+|+|.++++|.+||||||||+||||||+++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876667788999999999999999887 8899999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|++||||||||+||+.+...+++.|+++..++|+|+|||+++.+..||||++|++|+|++
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ 233 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEE
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999878899999999999999999999999999998
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=409.77 Aligned_cols=200 Identities=24% Similarity=0.362 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++||+|+|+. ++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+|| +|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999963 467999999999999999999999999999999999998 5789999998 499
Q ss_pred EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||||+|.+|+.|++|||.++...++++..++++.+++.+++..+ .|++|.+++.+.+||||||||++|||||+++|+||
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999986544555667778888887777766 78999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHH---HhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIR---KKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~---~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||+||+.++..+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999984 4446899999999999998899999999999987
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=405.83 Aligned_cols=201 Identities=27% Similarity=0.400 Sum_probs=183.4
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+.|+++||+|+|+. ++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+|| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 35999999999963 567999999999999999999999999999999999998 5789999998 59
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||||+|.+|++|++||+.++....+....++++.+++.+++..+ .+++|.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999986544555667778888888888877 8899999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHH-HHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||||+||+.++..+.+.+ .++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 209 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 209 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEE
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999874 55556899999999999998899999999999987
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=396.72 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL---- 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l---- 412 (597)
|+++||+|+|+.+ .++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999643 36999999999999999999999999999999999998 578999999999999987664
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccC------CCCChHHHHHHHHHhcHHHHHHhcCCCchh-hhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPF------EKYPDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~------~~~~~e~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~LSGGQrQRIa 484 (597)
|++||||||+|.+|.. |++||+.++ ...+.++..+.+ .+.... .|+... .......||||||||++
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----LECLKM-AELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHH-----HHHHHH-TTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHH-----HHHHHH-CCCChhhhhCChhhCCHHHHHHHH
Confidence 4579999999999986 999999642 123333222111 111111 344433 35667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||+.+|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++..+.||+|++|++|+|++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998753 799999999999888899999999999988
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=402.00 Aligned_cols=207 Identities=25% Similarity=0.399 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
-|+++||+|+|++..++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++. ..+...+|++|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 4899999999976667999999999999999999999999999999999998 57899999999994 33445688999
Q ss_pred EEEeCCC--CCCCccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
|||||+| .+|+.|++||+.++ ...+.++..+.++ +.++. -|++........+||||||||++|||||+.
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~-~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD-----NALKR-TGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHH-----HHHHH-TTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999997 58889999999763 2334444332222 11111 345555566678999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-A-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998875 3 8999999999999975 99999999999998
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-49 Score=391.32 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~ 417 (597)
-|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+ +++|+
T Consensus 6 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 3899999999964 57999999999999999999999999999999999998 578999999999988877655 55699
Q ss_pred EEeCCCCCCCc-cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
||||++.+|.+ |++||+.++. ..+.++..+.++ +.++.+.|++...+....+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987 9999998742 222233332222 222222234555667788999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998875 5899999999998775 699999999999987
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=404.97 Aligned_cols=203 Identities=28% Similarity=0.381 Sum_probs=175.9
Q ss_pred cEEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---H
Q psy1502 340 KIEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---L 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---l 412 (597)
-|+++||+++|+.+ .++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.|+..++... +
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 59999999999642 36999999999999999999999999999999999998 57899999999999998665 4
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|++||||||++.+|.. |++||+.++ ...+.++ +.++++.+ |++........+||||||||++
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~v----------gL~~~~~~~~~~LSGGqkQRVa 173 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV----------GLGDKHDSYPSNLSGGQKQRVA 173 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH----------TCGGGTTCCTTTSCHHHHHHHH
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHH
Confidence 7899999999999975 999999763 2334333 33333333 4444556667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|+|||||||||+||+.+...|.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988753 7999999999999975 99999999999998
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=382.53 Aligned_cols=206 Identities=20% Similarity=0.250 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh-c
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR-S 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr-~ 414 (597)
.|+++|++++|++ .++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++...+... +| +
T Consensus 4 ~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3899999999964 57999999999999999999999999999999999998 57899999999998877543 34 7
Q ss_pred CcEEEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 415 NISIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 415 ~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+|+||||++.+|. .|++||+.++. ..+.++..+ .+.+.++. -|++........+||||||||++|||||+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSE-LGLGDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHH-TTCTTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 8999999999987 59999997531 222221111 11122222 24444455666799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+..||+|++|++|++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998874 4799999999999987899999999999987
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=388.12 Aligned_cols=202 Identities=19% Similarity=0.229 Sum_probs=175.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|+ ++++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++...+...+++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 489999999995 467999999999999999999999999999999999998 578999999999999999999999999
Q ss_pred EeCCCCC-CCccHHhhcccCCC-----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-
Q psy1502 419 IPQDPVL-FSGTLRKNLDPFEK-----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR- 491 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~~~-----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~- 491 (597)
|+|++.+ |+.|++||+.++.. ..++++.++++..++ .........+||||||||++|||||++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDC----------LALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTC----------STTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCC----------hhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 9999987 57899999976421 123345555544443 333344456899999999999999999
Q ss_pred -----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 -----NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 -----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 479999999999987 599999999999998
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=384.73 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
.|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++. ..+...+|++|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 499999999995 357999999999999999999999999999999999998 57899999999985 34456678899
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||||++.+|.. |++||+.++. ..+.++..+. +.+.++. -|++........+||||||||++|||||+.
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK-----AMELLDK-VGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHH-TTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH-CCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 999999999976 9999997631 2232221111 1122222 245545566678999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998874 3789999999999987 599999999999987
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=381.74 Aligned_cols=202 Identities=19% Similarity=0.320 Sum_probs=174.5
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+.|+++||+++|+ ++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.++|.++.. ....+|++|+
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 4699999999995 457999999999999999999999999999999999998 578999999999976 5567889999
Q ss_pred EEeCCCCCCCc-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
||||++.+|.+ |++||+.++. ..+.+ ++.++++.. |++........+||||||||++|||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA----------GLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------CCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----------CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 9999997631 22322 233333333 444445556779999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+.+|++||||||||+||+.+...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 99999999999999999999999999998875 47899999999999976 99999999999987
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=384.42 Aligned_cols=206 Identities=23% Similarity=0.239 Sum_probs=175.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+. +.+|++|+
T Consensus 7 ~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEECC-EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 3899999999954 56999999999999999999999999999999999998 478999999999987764 34678899
Q ss_pred EEeCCCCCCC-ccHHhhcccCCC----------------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFEK----------------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~~----------------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
||||++.+|. .|++||+.++.. .+.++.. ..+.+.++. -|++........+||||||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEF-LKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHH-TTCGGGTTSBGGGSCHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHH-cCCchhhCCCchhCCHHHH
Confidence 9999999986 699999976421 1111111 112333333 3677677777889999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988754 799999999999986 599999999999987
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=392.73 Aligned_cols=198 Identities=28% Similarity=0.414 Sum_probs=165.6
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.+.|+++||+|.| +++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.+|| +|
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 3469999999964 469999999999999999999999999999999999984 789999998 59
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||||++.+|++|++||+. +....+..+.++++.+++.+++..+ .+++|.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999998 4334455566778888888888887 8899999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHH-HHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||||+||+.++..+.+.+ .++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEE
Confidence 9999999999999999999874 45556899999999999998899999999999987
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=385.19 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=172.3
Q ss_pred EEEEeeEEEeC-CC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcC
Q psy1502 341 IEFQNTNVRYL-SG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~-~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~ 415 (597)
|+++||+++|+ ++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999996 33 57999999999999999999999999999999999998 5789999999998642 67889
Q ss_pred cEEEeCCC--CCCCccHHhhcccCCC--C----ChHHHHHHHHHhcHH--HHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 416 ISIIPQDP--VLFSGTLRKNLDPFEK--Y----PDYVLWTALQEVELK--DMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 416 I~~V~Q~~--~LF~gTI~eNI~~~~~--~----~~e~i~~a~~~a~l~--~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
|+||||+| .+|+.|++||+.++.. . .++++.++++..++. ++ ......+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~~LSgGq~qRv~l 149 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF----------KDRVPFFLSGGEKRRVAI 149 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHH----------TTCCGGGSCHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccc----------ccCChhhCCHHHHHHHHH
Confidence 99999996 5778999999976421 1 234566666666554 33 334456899999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+++|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998874 47999999999999875 99999999999987
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=385.22 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----------CC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----------VP 408 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----------~~ 408 (597)
.|+++||+++|++ .++|+||||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++.. ++
T Consensus 6 ~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3899999999953 57999999999999999999999999999999999998 478999999999862 44
Q ss_pred h---HHHhcCcEEEeCCCCCCCc-cHHhhcccCC----CCChH----HHHHHHHHhcHHHHHHhcCCCchh-hhCCCCCC
Q psy1502 409 L---SKLRSNISIIPQDPVLFSG-TLRKNLDPFE----KYPDY----VLWTALQEVELKDMIMEGAGLNMT-VYEGGTNF 475 (597)
Q Consensus 409 ~---~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~~----~~~~e----~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~L 475 (597)
. ..+|++|+||||++.+|.. |++||+.++. ..+.+ ++.++++.. |++.. ......+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV----------GIDERAQGKYPVHL 154 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT----------TCCHHHHTSCGGGS
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc----------CCCchhhcCCcccC
Confidence 3 3467889999999999976 9999997631 22322 233333333 44444 55667799
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 789999999999986 599999999999987
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=392.67 Aligned_cols=202 Identities=19% Similarity=0.291 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC--CChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED--VPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~--~~~~~lr~~I 416 (597)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+. |++|+|.+||.++.+ ......+++|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 389999999995 457999999999999999999999999999999999998 578999999999833 2233457889
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
|||+|++.||. .|++|||.++. ..+.+ ++.++++.. |++.........||||||||+|||||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~----------gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT----------GISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH----------TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999996 59999998752 22322 233444333 44445566677999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|++||||||||+||+.+...+++.|.++. .+.|+|+|||+++.+.. ||||++|++|+|++
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 999999999999999999999999998776653 37899999999999864 99999999999998
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=393.45 Aligned_cols=204 Identities=23% Similarity=0.332 Sum_probs=174.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++...+.. ++.|||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 389999999995 457999999999999999999999999999999999998 5789999999999988765 578999
Q ss_pred EeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+|++.||. .|++|||.++ ...+.++..+.++ +.++. -|++........+||||||||++|||||+.+|+
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~-----~~l~~-~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN-----QVAEV-LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHH-----HHHHH-TTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 999999997 4999999874 2344443332211 11111 345555566678999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988754 7899999999998864 99999999999998
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=381.83 Aligned_cols=202 Identities=17% Similarity=0.234 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
.|+++||+++|++ +++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++. ..+...+|++|
T Consensus 21 ~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 4999999999964 57999999999999999999999999999999999998 57899999999998 77778889999
Q ss_pred EEEeCCCCC-CCc--cHHhhcccCCC--------CChH---HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 417 SIIPQDPVL-FSG--TLRKNLDPFEK--------YPDY---VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 417 ~~V~Q~~~L-F~g--TI~eNI~~~~~--------~~~e---~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
+||||++.+ |.. |++||+.++.. ..++ ++.++++. -|++........+||||||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL----------VGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHH----------TTCGGGTTSBGGGSCHHHHHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHH----------cCChhHhcCChhhCCHHHHHH
Confidence 999999875 554 99999976421 1221 12222222 355555566677999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEE--EEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTV--LTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~Tv--I~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|+|++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988754 7899 99999999985 599999999999987
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=373.91 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=163.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|+|+ + |++|+|.+||.++.+.+...+ +..+
T Consensus 4 l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 4 LEIRDLWASIDG-ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEEEeEEEEECC-EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 899999999964 5799999999999999999999999999999999998 6 578999999999998887665 4569
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----C--CChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCC-CChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----K--YPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTN-FSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~--~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~-LSGGQrQRIaIAR 487 (597)
+||||+|.+|.+ |++||+.++. . ...++..+. +.+.++. -|+++.. ...... ||||||||++|||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTK-----VKKALEL-LDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHH-HTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHH-----HHHHHHH-cCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 999999999985 9999996521 1 121111111 1122222 2453322 233345 9999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
||+++|++||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998854 7899999999999986 59999999999987
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=376.41 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+|+ ++|+|+||+|++|+.+||+||||||||||+++|+|++ |+ |+|.++|.++.+.+...+|++|+||
T Consensus 5 l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 5 MQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 899999986 5999999999999999999999999999999999998 57 9999999999988888899999999
Q ss_pred eCCCCCCCc-cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV-- 494 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~-- 494 (597)
||++.+|.+ |++||+.++. ..+++++.++++..++ +........+||||||||++|||||+++|+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTC----------GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCC----------hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 999998875 9999998753 1234556665555544 334455677999999999999999999999
Q ss_pred -----EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 495 -----ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 -----ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+ ..||++++|++|++++
T Consensus 149 ~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998874 478999999999998 4699999999999987
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-47 Score=376.08 Aligned_cols=196 Identities=26% Similarity=0.338 Sum_probs=166.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +|+|+||++++ +.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+ .+|++|+||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 689999999953 59999999999 999999999999999999999998 57899999999997643 357889999
Q ss_pred eCCCCCCCc-cHHhhcccCCCC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 420 PQDPVLFSG-TLRKNLDPFEKY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||++.+|.. |++||+.++... . ++++.++++. -|++........+||||||||++|||||+++|
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~----------~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK----------LGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHT----------TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHH----------cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999986 999999875322 1 1222222222 24444455566799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++||||||||+||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999988753 789999999999875 599999999999987
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=392.90 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=172.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+++.++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++|||
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 91 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGL 91 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEE
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEE
Confidence 5999999999943457999999999999999999999999999999999998 578999999999987654 4789999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++|||.++. ..+.+ ++.++++.. |++........+||||||||+||||||+
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~----------gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM----------RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT----------TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 999999997 59999998641 23322 233444333 4444455556799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 7899999999998864 99999999999987
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=390.53 Aligned_cols=199 Identities=20% Similarity=0.322 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.. +++||||
T Consensus 4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v 80 (359)
T 2yyz_A 4 IRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMV 80 (359)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEE
T ss_pred EEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEE
Confidence 89999999995 356999999999999999999999999999999999998 5789999999999887654 6789999
Q ss_pred eCCCCCCC-ccHHhhcccCCC---CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK---YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~---~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|. .|++||+.++.. .+. +++.++++..+ ++........+||||||||+||||||++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~----------L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL----------IDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTT----------CGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC----------CchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999997 499999987522 222 23444444443 4444455567999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988754 789999999999885 599999999999987
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=389.71 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=167.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.. +++|||
T Consensus 11 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 4999999999953 56999999999999999999999999999999999998 5789999999999887654 678999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++|||.++. ..+.++ +.++++.. |++........+||||||||+||||||+
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~r~~~~LSGGq~QRvalArAL~ 157 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL----------QIEELLNRYPAQLSGGQRQRVAVARAIV 157 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHT----------TCGGGTTSCTTTCCSSCHHHHHHHHHHT
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998853 233332 33333333 4544555667899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 789999999999885 599999999999987
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=388.99 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=170.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ . +|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++||||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 789999999964 4 999999999999999999999999999999999998 578999999999987554 47899999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
||++.+|.. |++||+.++. .. .++++.++++..++ +........+||||||||+||||||+++|+
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L----------~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI----------EHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC----------TTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCC----------chHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999975 9999998641 11 22445555554443 333445567999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988753 789999999999875 599999999999987
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=391.88 Aligned_cols=201 Identities=24% Similarity=0.309 Sum_probs=171.0
Q ss_pred EEEEeeEEEeCCCCc--cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC---hHHHhc
Q psy1502 341 IEFQNTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP---LSKLRS 414 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~--vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~---~~~lr~ 414 (597)
|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.++.+.+ ....++
T Consensus 4 l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 4 IIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 899999999954 56 999999999999999999999999999999999998 57899999999987621 233578
Q ss_pred CcEEEeCCCCCCCc-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPVLFSG-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~LF~g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+||||||++.+|.. |++||+.++. ..+.+ ++.++++.. |++........+||||||||+|||
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL----------DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT----------TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHHHH
Confidence 99999999999975 9999998752 22332 233444333 444444555679999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 789999999999886 599999999999987
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=372.07 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~ 415 (597)
.|+++||+|+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+ + |++|+|.+||.++.+.+...+ +..
T Consensus 20 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 499999999995 45799999999999999999999999999999999998 4 568999999999988876665 456
Q ss_pred cEEEeCCCCCCCc-cHHhhcccCC----------CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCC-C-CCChhHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPFE----------KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-T-NFSVGQRQL 482 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~~----------~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G-~-~LSGGQrQR 482 (597)
|+||||++.+|.+ |++||+.+.. ..+.++..+ .+.+.++. .|+++...++. . +||||||||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIAL-LKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHH-TTCCTTTTTSBTTTTCCHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHH-cCCChhHhcCCcccCCCHHHHHH
Confidence 9999999999976 9999985421 122222211 12223332 35654333333 2 599999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
++|||||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998754 7899999999999875 89999999999987
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=385.70 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=171.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.. +++|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 389999999995 457999999999999999999999999999999999998 5789999999999887754 578999
Q ss_pred EeCCCCCCC-ccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++||+.++ ...+.++ +.++++.. |++........+||||||||+||||||+
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML----------HIDKLLNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT----------TCTTCTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCchHhhCChhhCCHHHHHHHHHHHHHH
Confidence 999999997 4999999874 1233332 33333333 3444445556799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 789999999999875 599999999999987
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=373.61 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|+++||+++|++. +++|+|+||+|+ |+++||+||||||||||+++|+|++|++|+|.++|.++.+. .. |++|+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~--~~-~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI--RN-YIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC--SC-CTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch--HH-hhheE
Confidence 7899999999642 579999999999 99999999999999999999999777789999999998765 23 78899
Q ss_pred -EEeCCCCCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 418 -IIPQDPVLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 418 -~V~Q~~~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
||||++.+ +.|++||+.++. +..++++.++++.. |++ ........+||||||||++|||||+++
T Consensus 78 ~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 78 TNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL----------KLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp ECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc----------CCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999999 999999997632 33344454444433 565 667777889999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcC-EEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSD-KVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D-~Iivl~~G~Ive 552 (597)
|++||||||||+||+++...+.+.|.++.+ |+|+|||+++.+. .|| ++++|++|++++
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 999999999999999999999999998754 9999999999985 599 999999999987
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=364.67 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=163.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ ++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++. .+|+.|+|
T Consensus 10 ~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~ 82 (214)
T 1sgw_A 10 KLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFF 82 (214)
T ss_dssp EEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEE
T ss_pred eEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEE
Confidence 5999999999965 7999999999999999999999999999999999998 57899999999986 36889999
Q ss_pred EeCCCCCCCc-cHHhhcccCC-----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE-----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~-----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|||++.+|.+ |++||+.++. ..+++++.++++.. |++.. +....+||||||||++|||||+++
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~----------gl~~~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV----------EVLDL-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT----------TCCCT-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc----------CCCcC-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999986 9999997631 12233444443332 56655 677889999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|++||||||||+||+.+...+.+.|.++. +++|+|++||+++.+..++..+++.+|+|
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 99999999999999999999999998875 36899999999999987544445666766
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=370.28 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=161.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+.++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|. ++++|+|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 3899999999962467999999999999999999999999999999999998 5789998 3678999
Q ss_pred EeCCCCCC-CccHHhhcccCCC--------CCh---HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVLF-SGTLRKNLDPFEK--------YPD---YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~LF-~gTI~eNI~~~~~--------~~~---e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++.+| +.|++||+.++.. ... +++.++++.. |++........+||||||||++||
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL----------NLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHT----------TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHc----------CChHHhcCChhhCCHHHHHHHHHH
Confidence 99999988 5799999976421 111 2233333333 444445556779999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|+ ++
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999999999999999999999999999988754 789999999999985 699999999999 76
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-45 Score=382.94 Aligned_cols=200 Identities=24% Similarity=0.341 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC------CChHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED------VPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~------~~~~~l 412 (597)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+ .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 389999999995 357999999999999999999999999999999999998 578999999999876 544 3
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+++||||+|++.+|. .|++||+.++. ..+.++ +.++++.. |++........+||||||||+|
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~r~~~~LSGGq~QRva 149 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL----------GLTELLNRKPRELSGGQRQRVA 149 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------TCGGGTTCCGGGSCHHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC----------CCchHhcCCcccCCHHHHHHHH
Confidence 678999999999996 69999998741 233332 33333333 3444445556799999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999988754 789999999999886 599999999999987
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=346.82 Aligned_cols=211 Identities=16% Similarity=0.157 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC-CcccEEEEeeEEEeCCCCccceeeeEEEcCCc
Q psy1502 290 GVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWP-VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKE 368 (597)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~ 368 (597)
.++..+...+..++++..+.+|+.++++.+++..... ..++ ..+.|+++||+|+|+ .++|+|+||+|++|+
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~------~~~~~~~~~i~~~~vs~~y~--~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE------GSWKSILTFFNYQNIELITF--INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS------CCTHHHHHHHHHTTCCHHHH--HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC------CcccccCCeEEEEEEEEEcC--hhhhccceEEecCCC
Confidence 5567777788888899999999999987654321110 0111 124599999999997 579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh-hcccCCCCChHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK-NLDPFEKYPDYVLWT 447 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e-NI~~~~~~~~e~i~~ 447 (597)
++|||||||||||||+++|+|++ +|+| ++||+|++.+|++|+++ ||.++.++++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~----- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH----- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-----
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--CceE------------------EEEecCccccccccHHHHhhccCccccH-----
Confidence 99999999999999999999999 8999 45789999999999998 9988655543
Q ss_pred HHHHhcHHHHHHh-c-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy1502 448 ALQEVELKDMIME-G-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525 (597)
Q Consensus 448 a~~~a~l~~fI~~-l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~T 525 (597)
+++++++. + +|+| |.+|||||||| |||++++|+||| ||+||++++..|+.
T Consensus 183 -----~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------- 234 (305)
T 2v9p_A 183 -----ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------- 234 (305)
T ss_dssp -----HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------
T ss_pred -----HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------
Confidence 34677877 6 7887 78999999999 999999999999 99999999998862
Q ss_pred EEEeccCchhHhhcCEEEEEeCCeEEE-----ecCchhHhhHhhh
Q psy1502 526 VLTIAHRLHTIMDSDKVLVMDSGVAVV-----SSFGFFFSKDLIE 565 (597)
Q Consensus 526 vI~IaHrlsti~~~D~Iivl~~G~Ive-----~~~g~y~~l~~~~ 565 (597)
+|||+++++.||+| +|++|+|++ +-++.|++++...
T Consensus 235 ---ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 ---LHSRVQTFRFEQPC-TDESGEQPFNITDADWKSFFVRLWGRL 275 (305)
T ss_dssp ---GTTTEEEEECCCCC-CCC---CCCCCCHHHHHHHHHHSTTTT
T ss_pred ---HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 39999999999999 999999998 2256788888644
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=343.70 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
-|+++||+|+|++ .+++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|. ..|+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999965 367999999999999999999999999999999999987 57899999862 2477
Q ss_pred EEeCCCCC-----CCccHH-------------------------------------------------------------
Q psy1502 418 IIPQDPVL-----FSGTLR------------------------------------------------------------- 431 (597)
Q Consensus 418 ~V~Q~~~L-----F~gTI~------------------------------------------------------------- 431 (597)
||+|++.. .+.|++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 77776531 122333
Q ss_pred -----hhcccCCC----C--------ChHHHHH-------------HHH--------HhcHHHHHHhcCCCchhh--hCC
Q psy1502 432 -----KNLDPFEK----Y--------PDYVLWT-------------ALQ--------EVELKDMIMEGAGLNMTV--YEG 471 (597)
Q Consensus 432 -----eNI~~~~~----~--------~~e~i~~-------------a~~--------~a~l~~fI~~l~GldT~v--ge~ 471 (597)
||+.++.. . ..+++.+ ++. ...+.+.++. -|++... ...
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~-lGL~~~~~~~~~ 898 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSM-LGLDPEIVSHSR 898 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHH-TTCCHHHHHHSC
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHH-cCCCchhhcCCC
Confidence 33332110 0 0000000 000 0111222222 4666543 456
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeE
Q psy1502 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~I 550 (597)
...||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+++.+. .||+|++|++|++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 7799999999999999999999999999999999999999999999876 579999999999986 5999999999999
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
++
T Consensus 977 v~ 978 (986)
T 2iw3_A 977 TP 978 (986)
T ss_dssp CC
T ss_pred EE
Confidence 76
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=327.70 Aligned_cols=185 Identities=18% Similarity=0.288 Sum_probs=153.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+. |++|+|.++| ..++|
T Consensus 269 ~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~ 334 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSY 334 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEE
T ss_pred eEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEe
Confidence 4889999999954 4688899999999999999999999999999999987 5789999765 46899
Q ss_pred EeCCCCC-CCccHHhhcccC-CC---CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVL-FSGTLRKNLDPF-EK---YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~-~~---~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
+||++.. |..|+++|+... .. ...+.+.++++.. |+..........||||||||++|||||+++|
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p 404 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL----------NLHRLLESNVNDLSGGELQKLYIAATLAKEA 404 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT----------TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc----------CCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999874 578999998642 11 1222233333333 3444455566789999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCC
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSG 548 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G 548 (597)
+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++|
T Consensus 405 ~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999875 47899999999999975 9999999874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=324.51 Aligned_cols=188 Identities=24% Similarity=0.330 Sum_probs=154.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+. |++|+|.+ +..|+|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEE
Confidence 4899999999953 3699999999999999999999999999999999987 57899985 247999
Q ss_pred EeCCCCC-CCccHHhhcccC-C-CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVL-FSGTLRKNLDPF-E-KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~-~-~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+ ++.|+.||+... . ... .+.+. +.++. -|+..........||||||||++|||||+.+|+
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~ 421 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKT---------ELLKP-LGIIDLYDREVNELSGGELQRVAIAATLLRDAD 421 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHH---------HTTTT-TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCS
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHH-cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999876 567999987532 0 111 11111 11111 355555566677999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
+|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||||++|++ |+++.
T Consensus 422 lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~ 484 (538)
T 1yqt_A 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGR 484 (538)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEee
Confidence 999999999999999999999999875 38899999999999975 999999996 67664
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.85 Aligned_cols=188 Identities=24% Similarity=0.344 Sum_probs=154.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+. |++|+|.+ +.+|+|
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEE
Confidence 4899999999953 3799999999999999999999999999999999987 57899976 247999
Q ss_pred EeCCCCC-CCccHHhhcccC-C-CC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVL-FSGTLRKNLDPF-E-KY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~-~-~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+ ++.|+.||+... . .. ..+.+.++++.. |++.........||||||||++|||||+++|+
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~ 491 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL----------GIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 491 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCS
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999876 578999998642 1 11 112222222222 44444455567899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
+|||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++.
T Consensus 492 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~ 554 (607)
T 3bk7_A 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 554 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEe
Confidence 999999999999999999999999874 48899999999999975 999999986 66654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=329.76 Aligned_cols=193 Identities=20% Similarity=0.211 Sum_probs=152.6
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE---------EEcceeCCCCChHH--
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI---------KIDDIDTEDVPLSK-- 411 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I---------~idg~di~~~~~~~-- 411 (597)
+||+++|++...+|+|+| +|++||.+||+||||||||||+++|+|++ |++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 899999965435899999 99999999999999999999999999987 578996 45665554321111
Q ss_pred HhcCcEEEeCCCC----CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 412 LRSNISIIPQDPV----LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 412 lr~~I~~V~Q~~~----LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
.+..+++++|+.. ++.+|++||+.... ..+++.++++..+ ++......-..||||||||++|||
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lg----------L~~~~~~~~~~LSGGekQRvaIAr 241 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELE----------LENVLDRELHQLSGGELQRVAIAA 241 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTT----------CTTGGGSBGGGCCHHHHHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcC----------CCchhCCChhhCCHHHHHHHHHHH
Confidence 2346889998743 45579999986421 1234555555444 333344445689999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|+|+++.+.. ||+|++|++|.
T Consensus 242 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999988743 7899999999999865 89999999753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=325.75 Aligned_cols=196 Identities=21% Similarity=0.210 Sum_probs=150.7
Q ss_pred EEE-EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE---------EEcceeCCCCCh
Q psy1502 341 IEF-QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI---------KIDDIDTEDVPL 409 (597)
Q Consensus 341 I~f-~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I---------~idg~di~~~~~ 409 (597)
.++ +||+++|++...+|+|+| +|++||++||+||||||||||+++|+|++ |++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 699999965435899999 99999999999999999999999999987 578985 356655432211
Q ss_pred HH--HhcCcEEEeCCCCCC----CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 410 SK--LRSNISIIPQDPVLF----SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 410 ~~--lr~~I~~V~Q~~~LF----~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
.. .+..+++++|+..++ .+|++||+.... ..+++.++++..++ +......-..||||||||+
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl----------~~~~~~~~~~LSgGekQRv 167 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALEL----------ENVLEREIQHLSGGELQRV 167 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTC----------TTTTTSBGGGCCHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCC----------ChhhhCChhhCCHHHHHHH
Confidence 11 134689999976543 458999885311 12334455544443 3233344568999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|.
T Consensus 168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 999999999999999999999999999999999988743 7899999999999875 89999998753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=320.19 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=153.4
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
..+...|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+| |+| +|.+... +.+++|
T Consensus 434 ~~L~~~~ls~~yg~-~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~------~~~~~~ 499 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA-KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQE------ECRTVY 499 (986)
T ss_dssp CEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTT------TSCEEE
T ss_pred ceeEEeeEEEEECC-EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCcccc------ceeEEE
Confidence 35888899999964 579999999999999999999999999999999995 554 5554321 124789
Q ss_pred EeCCC-CCC-CccHHhhcccC-CCCChHHHHHHHHHhcH-HHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDP-VLF-SGTLRKNLDPF-EKYPDYVLWTALQEVEL-KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~-~LF-~gTI~eNI~~~-~~~~~e~i~~a~~~a~l-~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
++|++ .++ +.|+.||+.+. ... ++++.++++..++ .++ ....-..||||||||++|||||+.+|+
T Consensus 500 v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~----------~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 500 VEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEM----------IAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp TTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHH----------HHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred EcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhh----------hcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99985 444 56999999751 112 5566666666665 232 223345899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||||++||+.+...+.+.|++ .++|+|+|||++..+.. ||+|++|++|+++.
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~ 625 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRK 625 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeec
Confidence 9999999999999999999999988 58999999999999975 99999999999974
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=312.24 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=152.1
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCC-----cEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPK-----EKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G-----~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.++++|+|++...+++|+||++++| |++||+||||||||||+++|+|+. |++|+. +. +..+
T Consensus 349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 3678999986667899999999999 789999999999999999999987 567862 21 3479
Q ss_pred EEEeCCCC-CCCccHHhhcccC--CC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 417 SIIPQDPV-LFSGTLRKNLDPF--EK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 417 ~~V~Q~~~-LF~gTI~eNI~~~--~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
+|+||++. .|++|+++|+... .. ...+...++++.. |+..........||||||||++|||||+.+
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l----------~l~~~~~~~~~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL----------RIDDIIDQEVQHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH----------TSTTTSSSBSSSCCHHHHHHHHHHHHTTSC
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc----------CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999965 5678999998531 12 2233333333333 333334455678999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++.
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 99999999999999999999999998874 37999999999999975 999999997 88876
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=320.69 Aligned_cols=192 Identities=20% Similarity=0.284 Sum_probs=129.2
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHH---------------------HHHhccc-cC-------CceEEEccee
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI---------------------AAIFRLA-EV-------EGVIKIDDID 403 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~---------------------~LL~~l~-~~-------~G~I~idg~d 403 (597)
..++|+||||+|++||++||+||||||||||+ +++.++. |. .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 7777765 34 4667777776
Q ss_pred CCCCChHHHhcCcEEEeCCCCCC--------------------CccHHhhcccCCCC--Ch--HH-----HHHHHHHhcH
Q psy1502 404 TEDVPLSKLRSNISIIPQDPVLF--------------------SGTLRKNLDPFEKY--PD--YV-----LWTALQEVEL 454 (597)
Q Consensus 404 i~~~~~~~lr~~I~~V~Q~~~LF--------------------~gTI~eNI~~~~~~--~~--e~-----i~~a~~~a~l 454 (597)
.... .++.+++|+|.+.++ ..|++||+.+.... .+ .+ +.++++..
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-- 183 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHH--
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH--
Confidence 5432 245677777765432 45899999763211 11 11 11111111
Q ss_pred HHHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEec
Q psy1502 455 KDMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIA 530 (597)
Q Consensus 455 ~~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 530 (597)
+..+. -|++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. .+.|+|+||
T Consensus 184 -~~l~~-~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 -GFLQN-VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp -HHHHH-TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHH-cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 11222 344332 344566899999999999999999998 999999999999999999999998874 478999999
Q ss_pred cCchhHhhcCEEEEE------eCCeEEE
Q psy1502 531 HRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 531 Hrlsti~~~D~Iivl------~~G~Ive 552 (597)
|+++.+..||+|++| ++|++++
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~ 289 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVA 289 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEE
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEE
Confidence 999999899999999 8999987
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=322.86 Aligned_cols=190 Identities=25% Similarity=0.376 Sum_probs=139.4
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh----------------------ccccCCceEEEcceeCCCCChHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF----------------------RLAEVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~----------------------~l~~~~G~I~idg~di~~~~~~~ 411 (597)
.++|+||||+|++||++||+||||||||||+++|+ |+.+..|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998764 33345678999999887544221
Q ss_pred Hhc-----------------------------------------CcEEEeCCCCCC------------------------
Q psy1502 412 LRS-----------------------------------------NISIIPQDPVLF------------------------ 426 (597)
Q Consensus 412 lr~-----------------------------------------~I~~V~Q~~~LF------------------------ 426 (597)
... ..|+++|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 123344433322
Q ss_pred ---------CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccCC---
Q psy1502 427 ---------SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRNN--- 493 (597)
Q Consensus 427 ---------~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~p--- 493 (597)
+.|++||+.+.....+ ..++ .+.+.. -|+. ...+.....||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~--~~~~------~~~l~~-~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p 565 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPK--IKRK------LETLYD-VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGR 565 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHH--HHHH------HHHHHH-TTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhh--HHHH------HHHHHH-cCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCC
Confidence 2467777665432211 1111 122222 2333 2356777899999999999999999887
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
+|||||||||+||+.+...|.+.|+++. .++|+|+|||+++.+..||+|++| ++|+|++
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 5999999999999999999999998875 478999999999999999999999 8999998
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-33 Score=309.65 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=145.5
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE-----------EEcceeCCCCChHHH
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI-----------KIDDIDTEDVPLSKL 412 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I-----------~idg~di~~~~~~~l 412 (597)
|++++|......|++++ ++++||.+||+||||||||||+++|+|++ |++|+| .++|.++..+....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 47899966556788877 58999999999999999999999999987 578998 334444333323333
Q ss_pred hcCcE--EEeCCCCC----CC---ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNIS--IIPQDPVL----FS---GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~--~V~Q~~~L----F~---gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
.+.+. +.+|.... +. .++.+++.......++++.++++.. |++......-..||||||||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL----------QLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHH----------TCTGGGGSCTTTCCHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHc----------CCcchhCCChHHCCHHHHHHH
Confidence 44443 33333211 11 1455554432223344555555444 444455666779999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
+|||||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|+|+++.+.. ||+|++|++|..
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999998765 7899999999999975 999999998754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-33 Score=305.47 Aligned_cols=193 Identities=13% Similarity=0.200 Sum_probs=147.1
Q ss_pred EeeEEEeCCCCccceeeeEEE-cCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE-----------EEcceeCCCCChH
Q psy1502 344 QNTNVRYLSGPRVIKNLNITI-HPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI-----------KIDDIDTEDVPLS 410 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I-~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I-----------~idg~di~~~~~~ 410 (597)
++++.+|..+ -++-..|.+ ++||.+||+||||||||||+++|+|++ |++|+| .++|.++..+...
T Consensus 3 ~~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 3567889533 344444555 499999999999999999999999987 678998 6777766433222
Q ss_pred HH------hcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 411 KL------RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 411 ~l------r~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
.. ...+.+++|.+.++.+|+++++.... ..+++.++++..++ +......-..||||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l----------~~~~~~~~~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNM----------TNLWNKDANILSGGGLQRLL 148 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTC----------GGGTTSBGGGCCHHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCC----------chhhcCChhhCCHHHHHHHH
Confidence 11 22345566666778889998875321 12334455554443 22233344679999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|..
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcc
Confidence 999999999999999999999999999999999998889999999999999875 999999997643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=292.94 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=154.9
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---------------------------------------cCCc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---------------------------------------EVEG 395 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---------------------------------------~~~G 395 (597)
.+|+++||++++| .++||||||||||||+++|.++. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 99999999999999999995543 2368
Q ss_pred eEEEcceeCCCCChHHHhcC-cEEEeCCCCCCCccHHhhcccCCCCCh--------------------------------
Q psy1502 396 VIKIDDIDTEDVPLSKLRSN-ISIIPQDPVLFSGTLRKNLDPFEKYPD-------------------------------- 442 (597)
Q Consensus 396 ~I~idg~di~~~~~~~lr~~-I~~V~Q~~~LF~gTI~eNI~~~~~~~~-------------------------------- 442 (597)
.+.+||.+++..+...+.+. +++++|++.++-.+-.++..+.+....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999999987777777777 899999998887766555432111110
Q ss_pred -------------HHHHHHHHH------h---cHHHHHHh-cC--C--------------------Cch---hhhCCCCC
Q psy1502 443 -------------YVLWTALQE------V---ELKDMIME-GA--G--------------------LNM---TVYEGGTN 474 (597)
Q Consensus 443 -------------e~i~~a~~~------a---~l~~fI~~-l~--G--------------------ldT---~vge~G~~ 474 (597)
+++.+.+.. . .+.+.+.. +. | ++. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000000000 0 01111111 11 1 111 23444433
Q ss_pred --------CChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE
Q psy1502 475 --------FSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 475 --------LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
||||||||++|||+|+.+| ++||||||||+||+++...+.+.|+++.+++|+|+|||+++.+..||+|++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999999888999999999999989999999
Q ss_pred E----eCCeEEE-----ecCchhHhhHh
Q psy1502 545 M----DSGVAVV-----SSFGFFFSKDL 563 (597)
Q Consensus 545 l----~~G~Ive-----~~~g~y~~l~~ 563 (597)
| ++|+++. ..+....++..
T Consensus 368 l~k~~~~G~~~~~~~~l~~~~~~~ei~~ 395 (415)
T 4aby_A 368 VEKQVEDGRTVSHVRLLTGDERLEEIAR 395 (415)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHHHHHH
T ss_pred EEEeccCCceEEEEEECCchhhHHHHHH
Confidence 9 9999876 23334555554
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=304.53 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=138.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHH---------HHHhcccc-------CC------ceEEEcceeCCCCChH-
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLI---------AAIFRLAE-------VE------GVIKIDDIDTEDVPLS- 410 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~---------~LL~~l~~-------~~------G~I~idg~di~~~~~~- 410 (597)
.+.|+||||+|++|+.+||+|+||||||||+ +++.+... .+ +.|.+|..++......
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 33333221 12 3356666665432110
Q ss_pred ---------HH-------------------------------hcCcEEEeCCCCCCCc-cHHhhcccCCCCC--------
Q psy1502 411 ---------KL-------------------------------RSNISIIPQDPVLFSG-TLRKNLDPFEKYP-------- 441 (597)
Q Consensus 411 ---------~l-------------------------------r~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~-------- 441 (597)
.+ ++..|+++|+..++.+ ++..|...+..+.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01 1346788888776643 2222222111000
Q ss_pred ----hH-----HHHHHHHHh-------cHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHccCC---CEEEeecC
Q psy1502 442 ----DY-----VLWTALQEV-------ELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN---VILVLDEA 501 (597)
Q Consensus 442 ----~e-----~i~~a~~~a-------~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~~p---~ILILDEa 501 (597)
-. .+.++++.. ...+.+.. -|+.. .+|+.+.+|||||||||+|||||+++| +|||||||
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~-vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEP 835 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHD-VGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEP 835 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHH-TTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEEST
T ss_pred ccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHH-cCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence 00 011222111 11122222 24433 478999999999999999999999876 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 502 TANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
|++||+.+...+++.|+++. .+.|+|+|+|+++.++.||+|++| ++|+|++
T Consensus 836 TsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~ 893 (916)
T 3pih_A 836 TVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA 893 (916)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEE
Confidence 99999999999999999875 489999999999999999999999 8999998
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-33 Score=306.28 Aligned_cols=181 Identities=10% Similarity=0.053 Sum_probs=145.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCc-e-EEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEG-V-IKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G-~-I~idg~di~~~~~~~lr~~I 416 (597)
.++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++ +.+| + |.+|| + .++.+
T Consensus 118 mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i 181 (460)
T 2npi_A 118 MKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPI 181 (460)
T ss_dssp HHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCS
T ss_pred hhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCe
Confidence 366777777773 799999999999999999999999999999998 5789 8 99998 1 37889
Q ss_pred EEEeCCCCCCC----ccHHhhcccCCCC-----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS----GTLRKNLDPFEKY-----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~----gTI~eNI~~~~~~-----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||||++.+|. .|++||+ ++... .++++.++++. -|++.... ..+||||||||++|||
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~----------~gl~~~~~--~~~LSgGq~qrlalAr 248 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKN----------FGLERINE--NKDLYLECISQLGQVV 248 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECC----------CCSSSGGG--CHHHHHHHHHHHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHH----------hCCCcccc--hhhhhHHHHHHHHHHH
Confidence 99999986543 5899999 64221 11111111111 36665543 7799999999999999
Q ss_pred H--HccCCCE----EEeec-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch------hH-hhcCE-----EEEEe-C
Q psy1502 488 A--IVRNNVI----LVLDE-ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH------TI-MDSDK-----VLVMD-S 547 (597)
Q Consensus 488 A--ll~~p~I----LILDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls------ti-~~~D~-----Iivl~-~ 547 (597)
| |+.+|++ ||||| |||+||+. ...+.+.++++ +.|+|+|+|+.+ .+ ..||+ |++|+ +
T Consensus 249 a~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~ 325 (460)
T 2npi_A 249 GQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL 325 (460)
T ss_dssp HHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred HHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence 9 9999999 99999 99999999 67777777665 689999999988 44 45999 99999 9
Q ss_pred CeEEE
Q psy1502 548 GVAVV 552 (597)
Q Consensus 548 G~Ive 552 (597)
|+|++
T Consensus 326 G~iv~ 330 (460)
T 2npi_A 326 DGVSA 330 (460)
T ss_dssp TTCCC
T ss_pred CcEEE
Confidence 99984
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=289.61 Aligned_cols=198 Identities=24% Similarity=0.353 Sum_probs=145.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-c-c----c---cCCc-------------eE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-R-L----A---EVEG-------------VI 397 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~-l----~---~~~G-------------~I 397 (597)
.++++|++. .+|+||||+|++|+.+||+|+||||||||++.|+ | + + +..| .|
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 488898862 3799999999999999999999999999999864 2 1 1 1223 37
Q ss_pred EEcceeCCCCC---hH-------HHh---------cCcEEEeCCCCC---------------------C-----------
Q psy1502 398 KIDDIDTEDVP---LS-------KLR---------SNISIIPQDPVL---------------------F----------- 426 (597)
Q Consensus 398 ~idg~di~~~~---~~-------~lr---------~~I~~V~Q~~~L---------------------F----------- 426 (597)
.+||.++..-. +. ..| +.+||++|...+ |
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 88988875321 11 111 346888886322 1
Q ss_pred -----------------------CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHH
Q psy1502 427 -----------------------SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQL 482 (597)
Q Consensus 427 -----------------------~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQR 482 (597)
+.|+.||+.+..... ++. ...+.++. -|+.. ..+.....||||||||
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~-~gL~~~~l~~~~~~LSGGekQR 853 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIK------RKLETLYD-VGLGYMKLGQPATTLSGGEAQR 853 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHH------HHHHHHHH-TTCSSSBTTCCGGGCCHHHHHH
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHH------HHHHHHHH-cCCCcccccCchhhCCHHHHHH
Confidence 012233332221110 111 11233333 36665 5788889999999999
Q ss_pred HHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 483 ICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
++|||||+++| +||||||||++||+.+...+.+.|+++. .+.|+|+|+|++..+..||+|++| ++|+|+.
T Consensus 854 v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~ 933 (972)
T 2r6f_A 854 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 933 (972)
T ss_dssp HHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEE
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEE
Confidence 99999999875 9999999999999999999999998875 479999999999999899999999 7899987
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=288.90 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=147.6
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHH-Hhccc--------c-----------------
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAA-IFRLA--------E----------------- 392 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L-L~~l~--------~----------------- 392 (597)
..|+++|+++ .+|+||||+|++|+++||+|+||||||||++. |.|+. +
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 3599999986 26999999999999999999999999999996 66542 1
Q ss_pred -CCc-------eEEEcceeCCCCCh----------HHHhcCcEEEe---------CC----------------------C
Q psy1502 393 -VEG-------VIKIDDIDTEDVPL----------SKLRSNISIIP---------QD----------------------P 423 (597)
Q Consensus 393 -~~G-------~I~idg~di~~~~~----------~~lr~~I~~V~---------Q~----------------------~ 423 (597)
.+| .|.+||.++..-+. +.+|+.++++| +. -
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 256 68999988864332 33443333222 21 1
Q ss_pred CCC-------------------------CccHHhhcccCCCCChHHHHHHH----HHhcHHHHHHhcCCCch-hhhCCCC
Q psy1502 424 VLF-------------------------SGTLRKNLDPFEKYPDYVLWTAL----QEVELKDMIMEGAGLNM-TVYEGGT 473 (597)
Q Consensus 424 ~LF-------------------------~gTI~eNI~~~~~~~~e~i~~a~----~~a~l~~fI~~l~GldT-~vge~G~ 473 (597)
.++ ..||.||+.+. -.+..... +.....+.++. -|+.. .++....
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~lt----v~e~l~~~~~~~~~~~~~~~L~~-~gL~~~~l~~~~~ 729 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALT----VDEAHDFFADESAIFRALDTLRE-VGLGYLRLGQPAT 729 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCB----HHHHHHHTTTSHHHHHHHHHHHH-TTCTTSBTTCCGG
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhcc----HHHHHHHhhcchHHHHHHHHHHH-cCCCcccccCCcc
Confidence 111 12555555321 01100000 00112233333 35554 4678888
Q ss_pred CCChhHHHHHHHHHHHccC---CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE----
Q psy1502 474 NFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM---- 545 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl---- 545 (597)
.||||||||++|||||+++ |+||||||||++||+.+...+.+.|+++. .+.|+|+|+|+++.+..||+|++|
T Consensus 730 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~ 809 (842)
T 2vf7_A 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGA 809 (842)
T ss_dssp GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSS
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCC
Confidence 9999999999999999996 69999999999999999999999998874 589999999999999889999999
Q ss_pred --eCCeEEE
Q psy1502 546 --DSGVAVV 552 (597)
Q Consensus 546 --~~G~Ive 552 (597)
++|+|++
T Consensus 810 g~~~G~Iv~ 818 (842)
T 2vf7_A 810 GEDGGRLVA 818 (842)
T ss_dssp GGGCCSEEE
T ss_pred CCCCCEEEE
Confidence 6999987
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=255.23 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=148.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-----------------------------
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----------------------------- 390 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l----------------------------- 390 (597)
.|+++|. .+|. ++++|++++| .++|+||||||||||++.|..+
T Consensus 5 ~L~i~nf-r~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~ 76 (322)
T 1e69_A 5 KLYLKGF-KSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAG 76 (322)
T ss_dssp EEEEESB-TTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCS
T ss_pred EEEEeCc-eeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCc
Confidence 4677772 2342 2578899999 9999999999999999999832
Q ss_pred ---------------------cc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC-CccHHhhcccCCC----C---
Q psy1502 391 ---------------------AE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEK----Y--- 440 (597)
Q Consensus 391 ---------------------~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF-~gTI~eNI~~~~~----~--- 440 (597)
+. .+|.+.+||.+++..+...+...+++.||+..++ .|++.+|+..... +
T Consensus 77 ~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 77 SAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred eEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHH
Confidence 12 2478899999986656677777899999998766 8999999865321 0
Q ss_pred ---------ChHHHHHHHHHh------------cHHH-HHHhc-CCCchhhhC------CCCCCChhHHHHHHHHHHHc-
Q psy1502 441 ---------PDYVLWTALQEV------------ELKD-MIMEG-AGLNMTVYE------GGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 441 ---------~~e~i~~a~~~a------------~l~~-fI~~l-~GldT~vge------~G~~LSGGQrQRIaIARAll- 490 (597)
+.+++.+.+... .+.+ ....+ .|+++.++. ....||||||||++|||||.
T Consensus 157 ~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~ 236 (322)
T 1e69_A 157 HPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFAL 236 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHH
Confidence 011122221110 0000 00113 466665432 34689999999999999996
Q ss_pred ---cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEE--EEEeCCeEEE
Q psy1502 491 ---RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV--LVMDSGVAVV 552 (597)
Q Consensus 491 ---~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~I--ivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|.++.+++|+|+|||+.+.+..||++ ++|++|...-
T Consensus 237 ~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~ 303 (322)
T 1e69_A 237 MEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAI 303 (322)
T ss_dssp TTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEE
T ss_pred hccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEE
Confidence 7899999999999999999999999999987788999999999888889987 8899986543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-30 Score=256.86 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=122.8
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCCh-HHHhcCcEEEeCCCCCCCc-----
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL-SKLRSNISIIPQDPVLFSG----- 428 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~-~~lr~~I~~V~Q~~~LF~g----- 428 (597)
.-|+||||+|++|+.+||+||||||||||+++|+|++| |+|.+ |+++...+. ..+++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 36999999999999999999999999999999999985 99999 887755432 2357889999999877643
Q ss_pred ------cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH-----HHHHccCCCEEE
Q psy1502 429 ------TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL-----ARAIVRNNVILV 497 (597)
Q Consensus 429 ------TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI-----ARAll~~p~ILI 497 (597)
++.+| .++ .+++++.++++. +....++ .+|||||+||++| ||+++++|++++
T Consensus 88 ~~l~~~~~~~~-~~g--~~~~~i~~~l~~-----------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 88 DFLEYDNYANN-FYG--TLKSEYDKAKEQ-----------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp CEEEEEEETTE-EEE--EEHHHHHHHHHT-----------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred chhhhhhcccc-cCC--CcHHHHHHHHhC-----------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 33333 121 123444444432 2222232 6899999999999 999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|||||+++|.++|..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999998877777 788 678999999876
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-29 Score=246.48 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=101.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
+++|+|| ++|+++||+||||||||||+++|+|+.|++|+|. +.++.. +...++++|+||||++ +||
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 4589986 8999999999999999999999999933689994 333321 2234578999999997 677
Q ss_pred c-ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHH
Q psy1502 434 L-DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512 (597)
Q Consensus 434 I-~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~ 512 (597)
+ .+.... .+.+........+.+.++. |+ |||||++|||||+.+|++||||||||+ +...
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~--gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~ 138 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA--GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQ 138 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT--TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh--CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHH
Confidence 7 332100 0000000000112222221 22 999999999999999999999999999 8888
Q ss_pred HHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 513 I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
+.+.|.++.+++|+| |||+++.+. +++..++|..
T Consensus 139 l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 139 MKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 999998874578999 999988654 4556677754
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-27 Score=222.61 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+...-..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~~~~~~------- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFSSKFFT------- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEEETTCC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHHhhcCC-------
Confidence 689999999999999999999874 667777654433224578999999987 3445542100000
Q ss_pred HHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH-----HccCCCEEEeec--CCCCCCHHHHHHHHHHHHHhc
Q psy1502 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA-----IVRNNVILVLDE--ATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 449 ~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA-----ll~~p~ILILDE--aTSaLD~~te~~I~~~l~~~~ 521 (597)
.+..++..+.+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.+++
T Consensus 66 ---------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-- 128 (178)
T 1ye8_A 66 ---------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-- 128 (178)
T ss_dssp ---------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--
T ss_pred ---------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--
Confidence 0134677788999999999999996 999999999999 9999999999999999877
Q ss_pred CCcEEEEecc---CchhHhh-cCEEEEEeCCeEEE
Q psy1502 522 ADCTVLTIAH---RLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 522 ~~~TvI~IaH---rlsti~~-~D~Iivl~~G~Ive 552 (597)
.+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 129 ~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4677899986 6666654 676 6677777
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-27 Score=223.33 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=107.6
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCC--CCCccHHhhccc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDP 436 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~--LF~gTI~eNI~~ 436 (597)
||||++++|+.++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~----- 59 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVI--------SSDFCR---GLMSDDENDQTVTGAAF----- 59 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-----GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHH-----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEE--------ccHHHH---HHhcCcccchhhHHHHH-----
Confidence 6899999999999999999999999999653 22222 222333 67777752 1111111
Q ss_pred CCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHH-----
Q psy1502 437 FEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD----- 510 (597)
Q Consensus 437 ~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te----- 510 (597)
+.+.. .....+ .|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 60 ----------~~~~~----~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 60 ----------DVLHY----IVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp ----------HHHHH----HHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred ----------HHHHH----HHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 11110 001123 6777666544 45599999999999999999999999999999999955
Q ss_pred -----------HHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEE
Q psy1502 511 -----------LLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 511 -----------~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Ii 543 (597)
..+.+.|.++. ++.|+|+|+|+++.+..++++.
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 67777765543 3789999999999999888754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-28 Score=253.94 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=118.1
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+||+| | +++++++||.+++|+.++|+||||||||||+++|+|+++ .+|.|.++|.+ ++....+++++++++|
T Consensus 151 ~~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 151 YNLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG 224 (330)
T ss_dssp TTTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB
T ss_pred cCchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC
Confidence 777888 7 469999999999999999999999999999999999985 68999999976 3333335566666641
Q ss_pred CCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
|||+||++|||||.++|++||||||
T Consensus 225 -------------------------------------------------------gg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 225 -------------------------------------------------------GNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp -------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred -------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCC
Confidence 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCc-EEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 502 TANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|+. + +.+.|+.+..+. |+|+++|++++...||||++|++|+.
T Consensus 250 ~~~---e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 250 RSS---E----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CST---H----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred ChH---H----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 992 2 455666665555 79999999998899999999998863
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-26 Score=239.19 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=75.6
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEE
Q psy1502 471 GGTNFSVGQRQLICLARAIV------RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Ii 543 (597)
....||||||||++|||||+ .+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998875 4789999999999988899999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999974
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-26 Score=246.18 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=131.7
Q ss_pred CccceeeeEEEcCCc--------------------EEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH
Q psy1502 354 PRVIKNLNITIHPKE--------------------KIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 354 ~~vL~~isl~I~~G~--------------------~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l 412 (597)
+.+|+||||++++|+ .+||+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999987 57899999998763
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChh--HHHHHHHHHHHc
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVG--QRQLICLARAIV 490 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGG--QrQRIaIARAll 490 (597)
| .++++|++...+.|+.||+.++.. ++.+.+.++..++ ..++..+ . |||| ||||++|||||.
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L-------~~~~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKF-------YEYDFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTG-------GGCSEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCC-------CccCCeE----E-eCCCCccHHHHHHHHHHH
Confidence 2 278999986557899999877532 2334455554443 2233333 2 9999 999999999999
Q ss_pred c----------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc----------CCcEEEEeccCchh--Hhh-cCEEE
Q psy1502 491 R----------NNVILVLDEATANVDPKTDLLIQRTIRKKF----------ADCTVLTIAHRLHT--IMD-SDKVL 543 (597)
Q Consensus 491 ~----------~p~ILILDEaTSaLD~~te~~I~~~l~~~~----------~~~TvI~IaHrlst--i~~-~D~Ii 543 (597)
+ +|++++|||||++||+.+...+.+.|+++. ...++++-||.++- +.. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999999988887763 13578888999886 654 78775
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-26 Score=245.64 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=147.9
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce---eCCCCC-----h
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI---DTEDVP-----L 409 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~---di~~~~-----~ 409 (597)
..++++||++.|+.+..+|+++ |+|++|++++|+||||||||||+++|+|++ ++.|.|.++|. ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4589999999997556799999 999999999999999999999999999988 46899999998 555432 3
Q ss_pred HHHhcCcEEEeCC-CCC-CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHH
Q psy1502 410 SKLRSNISIIPQD-PVL-FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 410 ~~lr~~I~~V~Q~-~~L-F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIA 486 (597)
..+++.|+||+|+ ..+ ..-|+.+|+.+. .+... . .+.+. .+-+...+||||| ||++||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~------------~-~~~~v~~~ld~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR------------D-RGQHVLLIMDSLTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH------------T-TTCEEEEEEECHHHHHHHH-HHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH------------h-CCCCHHHHHHhHHHHHHHH-HHHHHH
Confidence 5688899999995 333 356888887541 11111 0 11110 0113356899999 999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-----Cc-----EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-----DC-----TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-----~~-----TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+++|++ |++||+.+...+.+.+.++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 270 ---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 270 ---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp ---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred ---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 999998 999999999999999998865 43 9999999999 77899999999999997
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-27 Score=237.31 Aligned_cols=182 Identities=20% Similarity=0.124 Sum_probs=147.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-CceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-EGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++ + +|+|.++|.++..+. +..+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 456677652 5999999 99999999999999999999999999984 5 899999999886543 456788
Q ss_pred EeC-----CCCCCCccHHhhcccCCCC-------ChHHHHHHHHHhc-----------------HHHHH-----------
Q psy1502 419 IPQ-----DPVLFSGTLRKNLDPFEKY-------PDYVLWTALQEVE-----------------LKDMI----------- 458 (597)
Q Consensus 419 V~Q-----~~~LF~gTI~eNI~~~~~~-------~~e~i~~a~~~a~-----------------l~~fI----------- 458 (597)
|+| ++..|..+|+.++...+++ +.+.++.+++.+. ++..+
T Consensus 75 v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~ 154 (261)
T 2eyu_A 75 VNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQV 154 (261)
T ss_dssp EEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHH
T ss_pred eeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchH
Confidence 998 6667778888888644333 6666666665542 11111
Q ss_pred -Hhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE--EEeecCCCCCCHHH---------HHHHHHHHHHhcCCcE
Q psy1502 459 -MEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI--LVLDEATANVDPKT---------DLLIQRTIRKKFADCT 525 (597)
Q Consensus 459 -~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I--LILDEaTSaLD~~t---------e~~I~~~l~~~~~~~T 525 (597)
..+ +++++.|++++.++||| ||++|||+++.+|+| +|+||+||++|... +..++++++...+++|
T Consensus 155 ~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t 232 (261)
T 2eyu_A 155 RIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLI 232 (261)
T ss_dssp HHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSS
T ss_pred HHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCC
Confidence 123 67999999999999999 999999999999999 99999999999873 5578999999999999
Q ss_pred EEEeccCchh
Q psy1502 526 VLTIAHRLHT 535 (597)
Q Consensus 526 vI~IaHrlst 535 (597)
.+.++||++.
T Consensus 233 ~~~~a~r~~~ 242 (261)
T 2eyu_A 233 TLEDAMEASP 242 (261)
T ss_dssp CHHHHHHHCS
T ss_pred CHHHHHHHhC
Confidence 9999999874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-24 Score=218.77 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHhhcccCCCCChHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLW 446 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~ 446 (597)
.+|||||||||||||+++|+|+. |++|+|.++|.++.. ...++.++|++|++.++.. |+.||+.++.....++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 58999999999999999999987 578999999998743 3346789999999998865 999999886533322222
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEE
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTV 526 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~Tv 526 (597)
+.+......++...+ . ..||||||||++||||+.. +++|||||++||+.. ..+++.|.+ ..++
T Consensus 81 ~~i~~~~~~~~~~~~------~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~v 143 (270)
T 3sop_A 81 EPIEKYINEQYEKFL------K----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVNI 143 (270)
T ss_dssp HHHHHHHHHHHHHHH------H----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSEE
T ss_pred HHHHHHHHHHHHhhh------H----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCcE
Confidence 222222222332221 1 2699999999999999875 999999999999986 344445543 4899
Q ss_pred EEeccCchhHhh
Q psy1502 527 LTIAHRLHTIMD 538 (597)
Q Consensus 527 I~IaHrlsti~~ 538 (597)
|+|.|+..++..
T Consensus 144 I~Vi~K~D~lt~ 155 (270)
T 3sop_A 144 IPVIAKADTMTL 155 (270)
T ss_dssp EEEETTGGGSCH
T ss_pred EEEEeccccCCH
Confidence 999999887754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-25 Score=238.14 Aligned_cols=173 Identities=19% Similarity=0.103 Sum_probs=145.2
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-CceEEEcceeCCCCChHHHhcCcEEEeC-----CCCCCC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-EGVIKIDDIDTEDVPLSKLRSNISIIPQ-----DPVLFS 427 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-~G~I~idg~di~~~~~~~lr~~I~~V~Q-----~~~LF~ 427 (597)
++|++++ +++|+.++|+||||||||||+++|+|+++ + +|+|.++|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677776 89999999999999999999999999985 4 799988776664 3 36788999999 899999
Q ss_pred ccHHhhcccCCCC-------ChHHHHHHHHHhcH-----------------HHHH-----------H-hc-CCCchhhhC
Q psy1502 428 GTLRKNLDPFEKY-------PDYVLWTALQEVEL-----------------KDMI-----------M-EG-AGLNMTVYE 470 (597)
Q Consensus 428 gTI~eNI~~~~~~-------~~e~i~~a~~~a~l-----------------~~fI-----------~-~l-~GldT~vge 470 (597)
++|++||+..++. +.+.++.+++.++. +..+ . .+ +++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999875554 67777777777652 1111 1 13 689999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCE--EEeecCCCCCCHH----H-----HHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVI--LVLDEATANVDPK----T-----DLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~I--LILDEaTSaLD~~----t-----e~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.++||| ||++|||+++.+|+| +|+||+||+||.. + +..++++++...+++|.+.+|||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 999999999999999 9999999999975 3 45689999999999999999999984
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-25 Score=228.62 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=129.2
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEE-----------------------EcCCcEEEEEcCCCCCHHHHHHHHhcccc-C
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNIT-----------------------IHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V 393 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~-----------------------I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~ 393 (597)
.+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|.|+++ .
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 45699999999993 577777765 89999999999999999999999999874 4
Q ss_pred CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCc-hhhh
Q psy1502 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLN-MTVY 469 (597)
Q Consensus 394 ~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~Gld-T~vg 469 (597)
.|. .++++|+||+++|+.|++||+.+.. ...+.. ....+.++++.+ .|+. ..+
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~~~~~~~~- 174 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKSGSDYACA- 174 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHTTCSCEEE-
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCCCcccCCc-
Confidence 453 5799999999999999999997532 121110 011223444444 4543 333
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh--hcCEEEEEeC
Q psy1502 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM--DSDKVLVMDS 547 (597)
Q Consensus 470 e~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~--~~D~Iivl~~ 547 (597)
..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|.|..+... .++|.+.+.+
T Consensus 175 ---~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 175 ---PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp ---EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ---ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999998622 1233333 3 4577788776642 3667666655
Q ss_pred Ce
Q psy1502 548 GV 549 (597)
Q Consensus 548 G~ 549 (597)
|+
T Consensus 245 ~~ 246 (312)
T 3aez_A 245 TA 246 (312)
T ss_dssp TG
T ss_pred cc
Confidence 54
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-25 Score=207.50 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc-C---CceEEEcceeCCCCC---hHHHh-cCcE----EEeCCCCCCCccHHhhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAE-V---EGVIKIDDIDTEDVP---LSKLR-SNIS----IIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~-~---~G~I~idg~di~~~~---~~~lr-~~I~----~V~Q~~~LF~gTI~eNI~ 435 (597)
++++|||+||||||||+++|+|+|+ . .|.|.+||.++.+++ .++|| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 6899999999999999999999985 4 699999999998887 77888 5788 899999988 322
Q ss_pred cCCCCChHHHHHHHHHhcHHHHHHh-cCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 436 PFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 436 ~~~~~~~e~i~~a~~~a~l~~fI~~-l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
.+++. .++++++++. +.||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -----~~~~~-----~a~l~~~i~~~l~g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -----VSEEE-----GNDLDWIYERYLSDYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -----CCHHH-----HTCHHHHHHHHTTTCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -----CChhh-----hhCHHHHHHhhCCCCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11222 7899999998 67999999995 9999999999999999999874
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=229.69 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=82.0
Q ss_pred CCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh
Q psy1502 462 AGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM 537 (597)
Q Consensus 462 ~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~ 537 (597)
-|++.. ++..-..|||||||||+|||||..+| .+|||||||++||+..-..+.+.|+++.. +.|+|+|+||+..+.
T Consensus 366 vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR 445 (842)
T ss_dssp TTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT
T ss_pred CCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 466643 57777899999999999999999999 49999999999999999999999888754 789999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|++| ++|+++.
T Consensus 446 ~aD~ii~lgpgaG~~~G~iv~ 466 (842)
T 2vf7_A 446 RADWLVDVGPEAGEKGGEILY 466 (842)
T ss_dssp TCSEEEEECSSSGGGCCSEEE
T ss_pred hCCEEEEeCCCcccCCCEEEE
Confidence 99999999 7899987
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-24 Score=206.77 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHH
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~ 446 (597)
|++++|+||||||||||+++|+|+++++| |.+||.+..++. .++++++|++|+. +++ ++|+.... ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~-~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG-LEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC-CCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc-ccCC---
Confidence 78999999999999999999999887779 999999986554 5789999999996 554 45654211 0000
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH-HHHH---HHccCCCEEEeec--CCCCCCHHHHHHHHHHHHHh
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI-CLAR---AIVRNNVILVLDE--ATANVDPKTDLLIQRTIRKK 520 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI-aIAR---All~~p~ILILDE--aTSaLD~~te~~I~~~l~~~ 520 (597)
....+..+|+.|..+|||||+++ +++| |+.++|++||||| ||..+|.+.-..+.+.+++
T Consensus 70 --------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~- 134 (189)
T 2i3b_A 70 --------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST- 134 (189)
T ss_dssp --------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-
T ss_pred --------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-
Confidence 01234478999999999999999 6666 7899999999999 8888999887777777764
Q ss_pred cCCcEEE----EeccCchhHhhcCEEEEEeCCeEEE----ecCchhHhhHh
Q psy1502 521 FADCTVL----TIAHRLHTIMDSDKVLVMDSGVAVV----SSFGFFFSKDL 563 (597)
Q Consensus 521 ~~~~TvI----~IaHrlsti~~~D~Iivl~~G~Ive----~~~g~y~~l~~ 563 (597)
..|+| .|+||.+ ...+|+|..+++|+|++ +++..|.++++
T Consensus 135 --~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~~ 182 (189)
T 2i3b_A 135 --PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKENRNHLLPDIVT 182 (189)
T ss_dssp --SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSSSGGGHHHHHHH
T ss_pred --CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChHhHHHHHHHHHH
Confidence 34555 3449986 56789999999999998 55566666654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-24 Score=207.18 Aligned_cols=175 Identities=10% Similarity=0.040 Sum_probs=108.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRK 432 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~e 432 (597)
.++++| .+|++|+.+||+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|. .|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 468888 7999999999999999999999999999985 34443311111111223678999999998886 46777
Q ss_pred hcccC----C-----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH---HHccCCCEEEeec
Q psy1502 433 NLDPF----E-----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR---AIVRNNVILVLDE 500 (597)
Q Consensus 433 NI~~~----~-----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR---All~~p~ILILDE 500 (597)
|+... . ..+.+++.+.++.+ .+-.+ ...+.|.+.++-..++ ||+.+|++++|||
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~-----------~~~~~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe 149 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATG-----------VPVLI---EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA 149 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHT-----------CCEEE---ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcC-----------CeEEE---EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH
Confidence 76321 1 12233333332221 00000 0112222222222222 8999999999999
Q ss_pred CCCCC----CHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 501 ATANV----DPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 501 aTSaL----D~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
||+++ |+.+...+.+.+.++. .+.|+|+|+|+++.+.. ||+|++|..
T Consensus 150 p~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 99998 7778889998888774 36899999999999864 999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-23 Score=211.99 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=125.5
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHH--hcCcEEEeCCCC-CCC-c
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKL--RSNISIIPQDPV-LFS-G 428 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~l--r~~I~~V~Q~~~-LF~-g 428 (597)
+++||++++|+.++|||||||||||+++.|+|++ +.+|+|.++|.|+.... +..| |..|+||+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578899999999999999999999999999987 57899999999986543 2334 458999999987 665 5
Q ss_pred cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCC
Q psy1502 429 TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATAN 504 (597)
Q Consensus 429 TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSa 504 (597)
|++||+.+.. ..+ .. .++. .|+.......-..|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d-~~---lldt----------~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD-VV---LCDT----------SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCS-EE---EECC----------CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCc-ch---HHhc----------CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 8999986421 111 00 0111 122111111112378 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecc---------CchhHh-hcCEEEEEeCCeEEE
Q psy1502 505 VDPKTDLLIQRTIRKKFADCTVLTIAH---------RLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 505 LD~~te~~I~~~l~~~~~~~TvI~IaH---------rlsti~-~~D~Iivl~~G~Ive 552 (597)
||+.+.. +.+.+. .+.|+|++|| .++.+. ..+.|.++..|+.++
T Consensus 233 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~ 286 (302)
T 3b9q_A 233 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 286 (302)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred cCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChh
Confidence 9998653 234322 3789999999 555554 368999999997654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-25 Score=215.69 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=123.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcccc--------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCcc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAE--------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGT 429 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gT 429 (597)
+++|+.++||||||||||||+++|+|+++ ..|+ +||.++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999874 4687 699999999999999886 7999999999
Q ss_pred HHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH-HHccCCCEEEeecCCCCCCHH
Q psy1502 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR-AIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 430 I~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR-All~~p~ILILDEaTSaLD~~ 508 (597)
+++|+ ++ .++++++++++.+...-+-..++|+++.... ++ .|| +++++|++++|||+|+++|.+
T Consensus 76 ~~~n~-~g--~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 76 FSGNL-YG--TSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp ETTEE-EE--EEHHHHHHHHHTTCEEEEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred ecCcc-CC--CCHHHHHHHHHcCCcEEEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 99998 54 3678888888754221110012566655321 22 677 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 509 te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
+|..|++.|.+..++ +.++| ++ ..||+|+|+++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999999887554 46788 55 88999999885
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=202.57 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE
Q psy1502 474 NFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
.|||||+||++|||+|+ .+|||||||||||+||+.....+.+.|.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998873 89999999 554 8999999
Q ss_pred EeCCeEEE
Q psy1502 545 MDSGVAVV 552 (597)
Q Consensus 545 l~~G~Ive 552 (597)
|++|+|++
T Consensus 340 l~~G~i~~ 347 (359)
T 2o5v_A 340 AQAGRFTP 347 (359)
T ss_dssp EETTEEEE
T ss_pred EECCEEEe
Confidence 99999987
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-22 Score=208.18 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=127.0
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHH--hcCcEEEeCCCC-CCC-c
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKL--RSNISIIPQDPV-LFS-G 428 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~l--r~~I~~V~Q~~~-LF~-g 428 (597)
..+||++++|+.++|||||||||||+++.|+|++ +.+|+|.++|.|+.... +..| |..|+||+|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999987 47899999999986542 2334 568999999987 664 6
Q ss_pred cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCC
Q psy1502 429 TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATAN 504 (597)
Q Consensus 429 TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSa 504 (597)
|++||+.+.. ..+ .. .+.. .|+.......-..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d-~~---lldt----------~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD-VV---LCDT----------SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS-EE---EEEC----------CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH-HH---HHHh----------cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999986421 111 00 0111 122111111112378 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecc---------CchhHh-hcCEEEEEeCCeEEE
Q psy1502 505 VDPKTDLLIQRTIRKKFADCTVLTIAH---------RLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 505 LD~~te~~I~~~l~~~~~~~TvI~IaH---------rlsti~-~~D~Iivl~~G~Ive 552 (597)
+|+.+.. +.+.+. .+.|+|++|| .++.+. .++.|..+..|+.++
T Consensus 290 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~ 343 (359)
T 2og2_A 290 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 343 (359)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred CCHHHHH---HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChH
Confidence 9998763 233332 3789999999 455554 468999999997655
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-22 Score=205.45 Aligned_cols=185 Identities=19% Similarity=0.224 Sum_probs=141.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-------ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV-------PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~-------~~~~ 411 (597)
.++.+|+++.|+.+..+|+++ |+|.+||++||+||||||||||+++|+|+. ++.|.|.++|.+.+++ ....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 478999999997566799999 999999999999999999999999999987 5679999988763221 2223
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCCCChhHHHHHHHHHHHc
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~LSGGQrQRIaIARAll 490 (597)
+++.+.+++|.. ....+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++| +
T Consensus 124 ~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~-~~~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 124 LSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp HTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred hhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh-ccccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 444556665532 1113444444444455554333 3433211 13456899999 999999 6
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF---ADC-----TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~---~~~-----TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+|++ |++||+.....+.+.+++.. ++. |++++||+++ -.-||+++++.+|+|+.
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEB
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEE
Confidence 89988 99999999999999998875 366 9999999999 66799999999999997
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-22 Score=218.03 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=120.8
Q ss_pred EeCCCCccceeeeE-EEcCCcEEEEEcCCCCCHHHHHHH--Hhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 349 RYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAA--IFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 349 ~Y~~~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~L--L~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
+|+.+.++|+|||| .|++|+.++|+||||||||||+++ +.|+.+ .+|.|+++|.+. ..+....++.+|+++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 45566789999999 999999999999999999999999 679885 789999999883 2233445678999999975
Q ss_pred CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCC
Q psy1502 425 LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504 (597)
Q Consensus 425 LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSa 504 (597)
.. +|+.......+++.+++++..++.++... ....|||| +|++++|||||+.
T Consensus 99 ~~-----~~l~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LS~g-------------~~~~lilDe~t~~ 150 (525)
T 1tf7_A 99 DE-----GKLFILDASPDPEGQEVVGGFDLSALIER----------INYAIQKY-------------RARRVSIDSVTSV 150 (525)
T ss_dssp HT-----TSEEEEECCCCSSCCSCCSSHHHHHHHHH----------HHHHHHHH-------------TCSEEEEECSTTT
T ss_pred cc-----CcEEEEecCcccchhhhhcccCHHHHHHH----------HHHHHHHc-------------CCCEEEECCHHHH
Confidence 32 23321100000111112222233222211 11234555 5789999999985
Q ss_pred -----CCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH---------hh-cCEEEEEeC
Q psy1502 505 -----VDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI---------MD-SDKVLVMDS 547 (597)
Q Consensus 505 -----LD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti---------~~-~D~Iivl~~ 547 (597)
||+.....+.+.++.+. .++|+|+|+|+++.+ .. ||+|++|++
T Consensus 151 ~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 151 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 58899888988887764 378999999999984 45 999999998
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-20 Score=191.58 Aligned_cols=181 Identities=10% Similarity=0.092 Sum_probs=120.4
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCc-eEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG-VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
.++|+++++.+++|+.++|+||+|||||||++.|++... .+| .|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 358999999999999999999999999999999999874 557 77665443 3556666666655555432 223
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH-HHHHHHHHHHccCCCEEEeecCCC---C---
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ-RQLICLARAIVRNNVILVLDEATA---N--- 504 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ-rQRIaIARAll~~p~ILILDEaTS---a--- 504 (597)
+|+..+ ..++++..++++ +++ ....-.+.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 96 ~~l~~~-~~~~~~~~~~~~-----~~l---~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 96 DSLKRE-IIENGKFDQWFD-----ELF---GNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHHH-HHHHTHHHHHHH-----HHH---SSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccccC-CCCHHHHHHHHH-----HHh---ccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 344321 112222222211 111 111112333335789999 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHhcC--CcEEEEeccCc--h--------------------hHh-hcCEEEEEeCCeE
Q psy1502 505 VDP-KTDLLIQRTIRKKFA--DCTVLTIAHRL--H--------------------TIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 505 LD~-~te~~I~~~l~~~~~--~~TvI~IaHrl--s--------------------ti~-~~D~Iivl~~G~I 550 (597)
+|. .....+.+.|+++.+ ++|+|+++|.. . .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 455677788877643 78999999995 3 454 6999999998875
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=187.97 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=67.5
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEE
Q psy1502 472 GTNFSVGQRQ------LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 472 G~~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
-..||||||| |+++|||++.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+......||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998864 36799999999887788999999
Q ss_pred Ee
Q psy1502 545 MD 546 (597)
Q Consensus 545 l~ 546 (597)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=212.52 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=122.3
Q ss_pred ccEEEEe-----eEEEeCCCCccceeeeEEEcC-------CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCC
Q psy1502 339 GKIEFQN-----TNVRYLSGPRVIKNLNITIHP-------KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTED 406 (597)
Q Consensus 339 ~~I~f~n-----Vsf~Y~~~~~vL~~isl~I~~-------G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~ 406 (597)
+.|+++| |++.|+++++|++|++|++++ |+.++|+||||||||||++.+ |+...
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 3599999 999996556899999999987 999999999999999999999 98651
Q ss_pred CChHHHhcCcE-EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 407 VPLSKLRSNIS-IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 407 ~~~~~lr~~I~-~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
..++| ||||++ ..-|+.|||.. . .++.|.+. .|. ..+|+|+++ +++
T Consensus 815 ------~aqiG~~Vpq~~--~~l~v~d~I~~--r------------ig~~d~~~--~~~--------stf~~em~~-~a~ 861 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEV--CRLTPIDRVFT--R------------LGASDRIM--SGE--------STFFVELSE-TAS 861 (1022)
T ss_dssp ------HHTTTCCEESSE--EEECCCSBEEE--E------------CC-------------------CHHHHHHHH-HHH
T ss_pred ------HhheeEEeccCc--CCCCHHHHHHH--H------------cCCHHHHh--hch--------hhhHHHHHH-HHH
Confidence 34666 999997 36678888742 1 11112111 233 346676665 999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHH-HHHHHHHHHhc-C-CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTD-LLIQRTIRKKF-A-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te-~~I~~~l~~~~-~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
||+++.+|+++||||||+++|+... ..+.+.|+.+. + ++|+|++||.++.+.. ||++.|+ +|++.
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999999999999874 44566666664 2 7899999999999875 8999887 47776
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-20 Score=203.31 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 473 TNF-SVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~L-SGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
.+| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999999999999554
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-21 Score=192.79 Aligned_cols=165 Identities=14% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
+.++|+|+||++++|+.+||+||+|||||||+++|.+++ |.+.+| ..++.++|++|+++...-|..+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 457999999999999999999999999999999999976 555554 3578999999997544568999
Q ss_pred hcccC-C--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 433 NLDPF-E--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 433 NI~~~-~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
|+.+. . ..++.+-.+ ...+.+.++.+ ++.+..+ ..||+||+||+++ ++++.+|+++|||||....|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFD---NDLMHRTLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHHHHTTCCCTTSGGGBC---HHHHHHHHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hhhhhccCCCCCCccccc---HHHHHHHHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 87531 1 111111000 00111222223 4444433 5799999999998 6899999999999998887764
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccCchhH-hh-cCEEEEEeCCeE
Q psy1502 509 TDLLIQRTIRKKFADCTVLTIAHRLHTI-MD-SDKVLVMDSGVA 550 (597)
Q Consensus 509 te~~I~~~l~~~~~~~TvI~IaHrlsti-~~-~D~Iivl~~G~I 550 (597)
+.++ .+.|++++||...-+ +. ++.+ ++|+-
T Consensus 150 --------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~~ 181 (245)
T 2jeo_A 150 --------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGRD 181 (245)
T ss_dssp --------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---C
T ss_pred --------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCCC
Confidence 2333 388999999974433 44 3334 66753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-22 Score=196.00 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=106.8
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc---cHHhhccc--CC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG---TLRKNLDP--FE 438 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g---TI~eNI~~--~~ 438 (597)
.++|+.+||+||||||||||+++|.|++++ +++||+||+++++. |+++|+.+ +.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~ 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYDH 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCCC
Confidence 579999999999999999999999998752 68999999999854 56666543 21
Q ss_pred --CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH----HHHHHHHHHHccCCCEEEeecCCCC-------C
Q psy1502 439 --KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ----RQLICLARAIVRNNVILVLDEATAN-------V 505 (597)
Q Consensus 439 --~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ----rQRIaIARAll~~p~ILILDEaTSa-------L 505 (597)
..+.+.+.++++..++.+++ ...+..+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 62 PDAFDLALYLEHAQALLRGLPV----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCE----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred hhhhhHHHHHHHHHHHHcCCCc----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 23445566666554433221 22345667774 5899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccCc
Q psy1502 506 DPKTDLLIQRTIRKKF--ADCTVLTIAHRL 533 (597)
Q Consensus 506 D~~te~~I~~~l~~~~--~~~TvI~IaHrl 533 (597)
|+.++..+.+.+.+.. +++|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999987753 588999999984
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-20 Score=207.41 Aligned_cols=170 Identities=12% Similarity=0.011 Sum_probs=122.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++.+++++.|+.-..+|. ..+++|+.++|+|++|||||||++.+++..++.|+ +-+.+++
T Consensus 258 ~~~~~l~~g~~~ld~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~-----------------~vi~~~~ 317 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACANKE-----------------RAILFAY 317 (525)
T ss_dssp CCCCEECCSCHHHHHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-----------------CEEEEES
T ss_pred cccceeecChHHHHHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC-----------------CEEEEEE
Confidence 345666665532112333 48999999999999999999999999998765564 1145666
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
|++. .++++|.... ..+-+ ++.. .|+..........|||||+||+++||++..+|++||+|
T Consensus 318 ee~~---~~l~~~~~~~-g~~~~------------~~~~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 318 EESR---AQLLRNAYSW-GMDFE------------EMER--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp SSCH---HHHHHHHHTT-SCCHH------------HHHH--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred eCCH---HHHHHHHHHc-CCCHH------------HHHh--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 7652 3455554211 11211 1111 23333344445689999999999999999999999999
Q ss_pred CCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEeccCc----------hhHh-hcCEEEEEeCCe
Q psy1502 501 ATANVDPK-----TDLLIQRTIRKKF-ADCTVLTIAHRL----------HTIM-DSDKVLVMDSGV 549 (597)
Q Consensus 501 aTSaLD~~-----te~~I~~~l~~~~-~~~TvI~IaHrl----------sti~-~~D~Iivl~~G~ 549 (597)
||++||.. ....+.+.++.+. .+.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999998 7777777776653 478999999998 6665 489999999987
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-21 Score=205.23 Aligned_cols=145 Identities=11% Similarity=0.146 Sum_probs=106.1
Q ss_pred cceeeeEEEcC--CcEEEEEcCCCCCHHHHHHHHhcccc-CC----ceEEEc----ceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 356 VIKNLNITIHP--KEKIGIVGRTGAGKSSLIAAIFRLAE-VE----GVIKID----DIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 356 vL~~isl~I~~--G~~vaIVG~SGsGKSTL~~LL~~l~~-~~----G~I~id----g~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
+.+.|+++|++ |+++||+||||||||||+++|+|+++ ++ |+|.++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999984 67 999874 5665 5566666 56999999999
Q ss_pred CCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-C--CCchhh-h-------CCCCCCChhHHHHHHHHHHH---
Q psy1502 425 LFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-A--GLNMTV-Y-------EGGTNFSVGQRQLICLARAI--- 489 (597)
Q Consensus 425 LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~--GldT~v-g-------e~G~~LSGGQrQRIaIARAl--- 489 (597)
+|++|++|||.++. +..+......+...+...++... . .++..+ + ++|.++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999998753 34445555555444445555543 2 355433 3 67888999999999999999
Q ss_pred cc--CCCEEEeecCC
Q psy1502 490 VR--NNVILVLDEAT 502 (597)
Q Consensus 490 l~--~p~ILILDEaT 502 (597)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 77 89999999997
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-19 Score=162.17 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCchhh-----hCCCCCCChhHHHHHHHH------HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEec
Q psy1502 463 GLNMTV-----YEGGTNFSVGQRQLICLA------RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIA 530 (597)
Q Consensus 463 GldT~v-----ge~G~~LSGGQrQRIaIA------RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 530 (597)
+|++.+ .....+||||||||++|| ||++.+|++|||||||++||+++...+.+.|.++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677665 244678999999999876 99999999999999999999999999999999875 378999999
Q ss_pred cCchhHhhcCEEEEE--eCCe
Q psy1502 531 HRLHTIMDSDKVLVM--DSGV 549 (597)
Q Consensus 531 Hrlsti~~~D~Iivl--~~G~ 549 (597)
|++.....||++++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999766779999999 5564
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-19 Score=191.83 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEe
Q psy1502 474 NFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
.||||||||++|||+|. ++||+||||||||+||+.+...+.+.|.++.. +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 39999999999999999 68999999999999999999999999988754 679999999998888999999985
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-19 Score=203.86 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=109.5
Q ss_pred ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-C-CChHHHHHHHHHhcHHHHHHhcCCCchh-
Q psy1502 391 AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-K-YPDYVLWTALQEVELKDMIMEGAGLNMT- 467 (597)
Q Consensus 391 ~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~-~~~e~i~~a~~~a~l~~fI~~l~GldT~- 467 (597)
.+..|+|.++|.++.++..-.+.+.++++. |+.+.. + .--.++.+..+. ..+++.. -|++..
T Consensus 393 ~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~------------~~~l~~~~~~~~~~~~~~~~~--~~~~L~~-vgL~~l~ 457 (916)
T 3pih_A 393 NREALSVKINGLNIHEFTELSISEELEFLK------------NLNLTEREREIVGELLKEIEK--RLEFLVD-VGLEYLT 457 (916)
T ss_dssp CTTGGGEEETTEEHHHHHHSBHHHHHHHHH------------SCCCCTTTTTTHHHHHHHHHH--HHHHHHT-TTCTTCB
T ss_pred ChHhcCcEECCccHHHhhhCCHHHHHHHHH------------hccCcHHHHHHHHhhHHHHHH--HHHHHHH-cCCcccc
Confidence 356799999999986644333333333322 111110 0 001111111111 1233333 355432
Q ss_pred hhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEE
Q psy1502 468 VYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 468 vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iiv 544 (597)
.+.....||||||||++|||||..+|+ +|||||||++||+.....+.+.|+++.. +.|+|+|+|++..+..||+|++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~ 537 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIID 537 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 456677999999999999999999887 9999999999999999999999998854 7899999999999999999999
Q ss_pred E------eCCeEEEecCchhHhhHh
Q psy1502 545 M------DSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 545 l------~~G~Ive~~~g~y~~l~~ 563 (597)
| ++|+|+. .|.+.++..
T Consensus 538 lgpgag~~~G~iv~--~G~~~e~~~ 560 (916)
T 3pih_A 538 IGPGGGTNGGRVVF--QGTVDELLK 560 (916)
T ss_dssp EESSSGGGCSEEEE--EECHHHHHH
T ss_pred EcCCcccCCCEEEE--eechhhhhc
Confidence 9 8999997 444555543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-20 Score=183.05 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=107.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEE-------cceeCCC-
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKI-------DDIDTED- 406 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~i-------dg~di~~- 406 (597)
|+++|++|+|+ .++|++ |++++|.+++|+|++|||||||++.|+|.. |+.|.+.+ ++..+.+
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 78999999996 368888 899999999999999999999999999965 34576654 2222221
Q ss_pred --CC--------hHHHhcCcEEEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchh-hhCCCCC
Q psy1502 407 --VP--------LSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTN 474 (597)
Q Consensus 407 --~~--------~~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~ 474 (597)
+. .+.|++.++++.|+...+++ ++..|+.......++++.+ ++.. .+.... ++.+-..
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---------~~~~-~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE---------WAVD-SNIAVLVLLTKADK 149 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH---------HHHH-TTCCEEEEEECGGG
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH---------HHHH-cCCCeEEEEecccC
Confidence 11 13456666666665444433 4444443321111122222 2222 234333 4666668
Q ss_pred CChhHHHH-HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC
Q psy1502 475 FSVGQRQL-ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522 (597)
Q Consensus 475 LSGGQrQR-IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~ 522 (597)
+|+||||| +..||+++++|+++++||||||+|.+.-..+.+.|.+..+
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 99999999 8999999999999999999999999999999999887654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-19 Score=187.50 Aligned_cols=165 Identities=18% Similarity=0.125 Sum_probs=115.0
Q ss_pred EeeEEEeCCCCccceee-eEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--c-CC----ce-EEEcceeCCCCChHHHhc
Q psy1502 344 QNTNVRYLSGPRVIKNL-NITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--E-VE----GV-IKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~i-sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~-~~----G~-I~idg~di~~~~~~~lr~ 414 (597)
+.+++.+ +.|+++ ++.|++|+.++|+||+|||||||++.+++.+ + .+ |. |+||+.+.. .++
T Consensus 111 ~~isTG~----~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~ 180 (349)
T 1pzn_A 111 GRISTGS----KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPE 180 (349)
T ss_dssp CEECCSC----HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHH
T ss_pred CeecCCC----HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHH
Confidence 4455544 345554 6899999999999999999999999999976 3 33 67 999997752 256
Q ss_pred CcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc----
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV---- 490 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll---- 490 (597)
++++++|++.++..++.+||.+....+ |++|+|++.++++++
T Consensus 181 ~i~~i~q~~~~~~~~v~~ni~~~~~~~----------------------------------~~~~~~~l~~~~~~~~~lS 226 (349)
T 1pzn_A 181 RIREIAQNRGLDPDEVLKHIYVARAFN----------------------------------SNHQMLLVQQAEDKIKELL 226 (349)
T ss_dssp HHHHHHHTTTCCHHHHGGGEEEEECCS----------------------------------HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCHHHHhhCEEEEecCC----------------------------------hHHHHHHHHHHHHHHHHhc
Confidence 789999999999899999997643322 345666666666666
Q ss_pred ---cCCCEEEeecCCCCCCHHH------------HHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 ---RNNVILVLDEATANVDPKT------------DLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ---~~p~ILILDEaTSaLD~~t------------e~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|+++|+||||+.+|++. -..+...|.++. .++|+|+++|..+.... ++.+.+...|++++
T Consensus 227 ~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 227 NTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp SSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCC
T ss_pred cccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEe
Confidence 6899999999999999963 133444455543 37899999998775542 34567777888765
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=171.50 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=108.7
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-------CCceEEEcceeCCCCChHHHhc
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-------VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-------~~G~I~idg~di~~~~~~~lr~ 414 (597)
++++++.++.-..+|.+ -+++|+.++|+||||||||||++.|+|++ + ..|.+.+++.+.. + ++
T Consensus 4 ~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~ 74 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PE 74 (231)
T ss_dssp CCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HH
T ss_pred CCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HH
Confidence 34555555321223433 69999999999999999999999999954 2 2348888886531 1 34
Q ss_pred CcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRN 492 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~ 492 (597)
++++++|+..++..|+.+|+.+....+..+..+.++. +.+.+.. ++ ..+
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------------------~~~~~~~ 125 (231)
T 4a74_A 75 RIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ--AEDKIKE---------------------------LLNTDRP 125 (231)
T ss_dssp HHHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHH--HHHHHHH---------------------------HTTSSSC
T ss_pred HHHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHH--HHHHHHH---------------------------hcccCCc
Confidence 6778888888888899999976543332221111111 1111111 11 348
Q ss_pred CCEEEeecCCCCCCHH-------HH-----HHHHHHHHHhc--CCcEEEEecc----CchhHhh-cCEEEEEeCCe
Q psy1502 493 NVILVLDEATANVDPK-------TD-----LLIQRTIRKKF--ADCTVLTIAH----RLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 493 p~ILILDEaTSaLD~~-------te-----~~I~~~l~~~~--~~~TvI~IaH----rlsti~~-~D~Iivl~~G~ 549 (597)
|++++|||||+.+|++ .+ ..+.+.|.++. .++|+|+|+| ....+.+ ||++++|++|+
T Consensus 126 ~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 126 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred eeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9999999999999984 22 24566665543 3789999999 4444765 89999999763
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-19 Score=192.40 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=100.1
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+.|+++|++++|+. .++++|+||+| +|||+||||||||++.|+|+.. +.| .+|.++...+ ...++.++
T Consensus 10 ~~l~~~~l~~~y~~-~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTTT-TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeECC-EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEE
Confidence 45899999999964 57999999998 9999999999999999999763 344 2333332111 11246799
Q ss_pred EEeCCCCCC-CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--
Q psy1502 418 IIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV-- 494 (597)
Q Consensus 418 ~V~Q~~~LF-~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~-- 494 (597)
+++|++.++ .-||.||+.++...+.++.++. +.+++.. .++++.+||++||||++++|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~-------------~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS-------------KFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp CC------CEEEEEEECC-----------CHH-----HHHHHHH-------------HHHHHTTTSCC-CCCCCCCC-CC
T ss_pred EEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH-------------HHHHHHHHHHHHHHHhccCCCee
Confidence 999998887 5799999987644333222222 2233332 233456689999999999999
Q ss_pred -EEEeecCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 495 -ILVLDEAT-ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 495 -ILILDEaT-SaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+|++|||| ++||+... .+++. +..+.++|+|.|+..++
T Consensus 141 vlL~ldePt~~~L~~~d~-~~lk~---L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDI-EFMKR---LHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEEECCC-CCSCCHHHH-HHHHH---HTTTSEEEEEEESTTSS
T ss_pred EEEEEecCcccCCCHHHH-HHHHH---HhccCcEEEEEEcccCc
Confidence 99999999 69998763 33333 44578999999988765
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-20 Score=196.70 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=114.6
Q ss_pred EEEeeEEE---eCC-CCccc---------eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCC
Q psy1502 342 EFQNTNVR---YLS-GPRVI---------KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV 407 (597)
Q Consensus 342 ~f~nVsf~---Y~~-~~~vL---------~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~ 407 (597)
+|+||+|+ |+. ++++| +++||.+++|+.++|+||||||||||+++|+|+++ .+|.|+++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 853 23466 99999999999999999999999999999999996 6899999985 466
Q ss_pred ChHHHhcCcEEEe-CCCCC---CCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHH
Q psy1502 408 PLSKLRSNISIIP-QDPVL---FSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 408 ~~~~lr~~I~~V~-Q~~~L---F~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQ 481 (597)
....+++++++|+ |++.+ +..|+++||..+ ...+|..+..+++.++++++++.+ .|++|.+++-+.+-..+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 6666788999999 99886 889999999753 233444444445556778899888 99999999999888999999
Q ss_pred HHHHHHH
Q psy1502 482 LICLARA 488 (597)
Q Consensus 482 RIaIARA 488 (597)
|++....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988763
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-18 Score=182.44 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=108.2
Q ss_pred EeeEEEe-CCCCccceeeeE-------EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-CceEEEcceeCCCCChHHHh
Q psy1502 344 QNTNVRY-LSGPRVIKNLNI-------TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-EGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 344 ~nVsf~Y-~~~~~vL~~isl-------~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-~G~I~idg~di~~~~~~~lr 413 (597)
.+++++| +...+.|+++.+ ...+|+.++|+||||||||||+++|+|+++ + +|.|...+.++ ++. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 6788888 444567777776 778999999999999999999999999875 4 46775544333 332 23
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
...++++|...-.. .. +-.+ +|||||..+|
T Consensus 168 ~~~~~v~q~~~~~~-----~~------~~~~---------------------------------------~La~aL~~~P 197 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----TL------GFSE---------------------------------------ALRSALREDP 197 (356)
T ss_dssp CSSSEEEEEEBTTT-----BS------CHHH---------------------------------------HHHHHTTSCC
T ss_pred ccccceeeeeeccc-----cC------CHHH---------------------------------------HHHHHhhhCc
Confidence 45667777543211 00 1010 9999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
++|++|||| |.++...+.++. ..|.|+|+++|..+.+..|||+++|..|
T Consensus 198 dvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 198 DIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999 888866665553 3489999999999999889999988554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=199.34 Aligned_cols=143 Identities=16% Similarity=0.193 Sum_probs=112.2
Q ss_pred ccEEEEeeEEEeC----CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHH
Q psy1502 339 GKIEFQNTNVRYL----SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 339 ~~I~f~nVsf~Y~----~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~l 412 (597)
+.|++++. ++| +++++++|+||+ |+.++|+||||||||||+++|+|+. +..|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 45888888 444 245799999999 9999999999999999999999975 4668752 1 12
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-- 489 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl-- 489 (597)
+..+++|+| +|. -++.||+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~-------------------------------------g~S~~~~e~~~la~il~~ 652 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG-------------------------------------GKSTFMVEMEEVALILKE 652 (765)
T ss_dssp EEEECCCSE---EEEECCC-------------------------------------------CCSHHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh-------------------------------------cccHHHHHHHHHHHHHHh
Confidence 457888887 454 366665532 2588999999999999
Q ss_pred ccCCCEEEeecC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEeccCchhHhhc
Q psy1502 490 VRNNVILVLDEA---TANVDPKTD-LLIQRTIRKKFADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 490 l~~p~ILILDEa---TSaLD~~te-~~I~~~l~~~~~~~TvI~IaHrlsti~~~ 539 (597)
+.+|+++||||| ||+||..+. ..+.+.|.+ .++|+|++||..+....|
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 578888877 489999999998876655
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-20 Score=190.06 Aligned_cols=128 Identities=13% Similarity=-0.000 Sum_probs=94.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCC----C
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK----Y 440 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~----~ 440 (597)
+++.+|||+|+||||||||+++|.++++..|. . ++.+.+|+||+++|++++++|+.++.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC--------------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46789999999999999999999998864441 1 456777799999999999999864210 0
Q ss_pred ChHHHHHHHHHhcHHHHHHhc-CCCchh------hhCCCCCCChhHHHHHHHH--HHHccCCCEEEeecCCCCCCHHH
Q psy1502 441 PDYVLWTALQEVELKDMIMEG-AGLNMT------VYEGGTNFSVGQRQLICLA--RAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 441 ~~e~i~~a~~~a~l~~fI~~l-~GldT~------vge~G~~LSGGQrQRIaIA--RAll~~p~ILILDEaTSaLD~~t 509 (597)
+....-++...+.+.+++..+ .|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000011222344567888888 998764 4566789999999999998 666 999999999999999875
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-18 Score=158.00 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE--e
Q psy1502 473 TNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM--D 546 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl--~ 546 (597)
..||||||||++||||+. ++||++||||||++||+.+...+.+.|.++.++.++|+||||..+...||+++.+ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 679999999999999995 6689999999999999999999999999998889999999999999999999854 5
Q ss_pred CCe
Q psy1502 547 SGV 549 (597)
Q Consensus 547 ~G~ 549 (597)
+|.
T Consensus 143 ~g~ 145 (173)
T 3kta_B 143 DGV 145 (173)
T ss_dssp TTE
T ss_pred CCE
Confidence 774
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-18 Score=195.99 Aligned_cols=140 Identities=17% Similarity=0.254 Sum_probs=104.7
Q ss_pred ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--CCChHH-------HHHHHHHhcHHHHHHhc
Q psy1502 391 AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--KYPDYV-------LWTALQEVELKDMIMEG 461 (597)
Q Consensus 391 ~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~-------i~~a~~~a~l~~fI~~l 461 (597)
.+....+.|+|.+|.+ +.+.||.|++.|.+ ..+.++ +.+..++. +++..
T Consensus 433 ~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~- 490 (972)
T 2r6f_A 433 KKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN- 490 (972)
T ss_dssp CTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH-
T ss_pred CHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh-
Confidence 3445678888876543 34567777777643 233321 11222221 23322
Q ss_pred CCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh
Q psy1502 462 AGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM 537 (597)
Q Consensus 462 ~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~ 537 (597)
-|++.. .......|||||||||+||+||..+| ++|||||||++||+..-..+.+.|+++. .+.|+|+|+||+..+.
T Consensus 491 vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~ 570 (972)
T 2r6f_A 491 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML 570 (972)
T ss_dssp HTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH
T ss_pred CCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 355543 45666799999999999999999985 9999999999999999999999998876 3789999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|++| ++|+|+.
T Consensus 571 ~ADrIi~LgpgaG~~gG~iv~ 591 (972)
T 2r6f_A 571 AADYLIDIGPGAGIHGGEVVA 591 (972)
T ss_dssp SCSEEEEECSSSGGGCCSEEE
T ss_pred hCCEEEEeCCCccCCCCEEEE
Confidence 99999999 7899998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=194.37 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=112.1
Q ss_pred ccEEEEeeEEEeC----CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHH
Q psy1502 339 GKIEFQNTNVRYL----SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 339 ~~I~f~nVsf~Y~----~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~l 412 (597)
+.|++++...-+- +.+.|++|++|++++|+.++|+||+||||||+++.+.... +..|
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G----------------- 692 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG----------------- 692 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT-----------------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC-----------------
Confidence 3588887655441 2357999999999999999999999999999999993321 1122
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--c
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--V 490 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l 490 (597)
++||++...+ .+.+.+. ..+ ++.+.+ ...+|+|++++..+|+++ +
T Consensus 693 ----~~vpa~~~~~--~~~d~i~--~~i------------g~~d~l-------------~~~lStf~~e~~~~a~il~~a 739 (934)
T 3thx_A 693 ----CFVPCESAEV--SIVDCIL--ARV------------GAGDSQ-------------LKGVSTFMAEMLETASILRSA 739 (934)
T ss_dssp ----CCBSEEEEEE--ECCSEEE--EEC------------C----------------------CHHHHHHHHHHHHHHHC
T ss_pred ----Cccccccccc--hHHHHHH--Hhc------------CchhhH-------------HHhHhhhHHHHHHHHHHHHhc
Confidence 1222221100 0001110 000 000110 135788888888888888 9
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHH-HHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQ-RTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~-~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....||++..+++|++..
T Consensus 740 ~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 740 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTA 804 (934)
T ss_dssp CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEE
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEE
Confidence 999999999999999999887774 3444443 3799999999999888999999999999875
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-19 Score=200.10 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=116.5
Q ss_pred cEEEEeeEEEeCCC-Cccceee----------eEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCC
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNL----------NITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTED 406 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~i----------sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~ 406 (597)
.++++|+++.|+.. +++|+.+ +|++|. +|||||||||||||+++|+|++ | .+|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 48899999999532 3455544 377776 9999999999999999999987 6 58999999999632
Q ss_pred C---ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 407 V---PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 407 ~---~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
. ....||+.|+|++|++.+++ .|+++||... . +.... .+..+| +++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~------~~~~~----------~~~~~s---~~~ 136 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------Q------NAIAG----------EGMGIS---HEL 136 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------H------HHHHC----------SSSCCC---SCC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------H------HHhcC----------Cccccc---hHH
Confidence 2 24568899999999998886 5899988531 1 00111 111222 244
Q ss_pred HHHHHHHccCCCEEEeecC------CCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhH--------hh-----cC
Q psy1502 483 ICLARAIVRNNVILVLDEA------TANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTI--------MD-----SD 540 (597)
Q Consensus 483 IaIARAll~~p~ILILDEa------TSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrlsti--------~~-----~D 540 (597)
+.++.+...+|+++++||| |++||+.+...+.+.+.++.. +.++++++|.+... +. +.
T Consensus 137 i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r 216 (608)
T 3szr_A 137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR 216 (608)
T ss_dssp EEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS
T ss_pred HHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc
Confidence 5555666678999999999 999999999999999988643 45788999997632 22 35
Q ss_pred EEEEEeCCeEEE
Q psy1502 541 KVLVMDSGVAVV 552 (597)
Q Consensus 541 ~Iivl~~G~Ive 552 (597)
.|.|+.++.+++
T Consensus 217 tI~VlTK~Dlv~ 228 (608)
T 3szr_A 217 TIGILTKPDLVD 228 (608)
T ss_dssp EEEEEECGGGSS
T ss_pred eEEEecchhhcC
Confidence 688998877665
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-18 Score=177.51 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=81.5
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+|++++|. ++.+++|++|+| +|||+||+|||||++.|.|. .+++| |.++|.++.. .. -++.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEec
Confidence 57888895 457999999998 99999999999999999985 46788 9889887754 11 1467999999
Q ss_pred CCCCC-CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 422 DPVLF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 422 ~~~LF-~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
++.++ .-|+.||..++.....++-++ .+.+++... ++..+ .++|||||||+++|||+. ++++||
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~~e~~~-----~l~~~l~~~--~~~~~----~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINCRDCFK-----TIISYIDEQ--FERYL----HDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp ---CCEEEEEEEEC-----------CT-----THHHHHHHH--HHHHH----HHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CCCcccCcchhhhhhhhhhcCcHHHHH-----HHHHHHHHH--HHHHH----HHhCHHhhhhhhhhhhhh----eeeeec
Confidence 87655 468999987643222111100 111112111 12222 368999999999999985 999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 501 ATAN-VDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 501 aTSa-LD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
||++ ||+... .+.+.+.+ ..+.++|+..|++.+
T Consensus 136 Pt~~~Ld~~~~-~~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 136 PFGHGLKPLDV-AFMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp SSSSSCCHHHH-HHHHHHTT-TSCEEEEECCGGGSC
T ss_pred CcccCCCHHHH-HHHHHHHh-cCCEEEEEEeCCCCC
Confidence 9985 999874 23333321 125788888999854
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=170.30 Aligned_cols=150 Identities=19% Similarity=0.114 Sum_probs=99.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHH--hcCcEEEeCCCCCCC-ccHHhhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKL--RSNISIIPQDPVLFS-GTLRKNLDP 436 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~l--r~~I~~V~Q~~~LF~-gTI~eNI~~ 436 (597)
++|+.++||||||||||||++.|+|++ |.+|+|.++|.|+.... +..| |..|++|+|++.++. .|+++|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999988 57899999999987654 2233 467999999988775 477777643
Q ss_pred CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHH
Q psy1502 437 FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 437 ~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~ 514 (597)
. ...+.+..+-...|... .....++..++||.+||||+..+|+ +|.|| |+++.| +.
T Consensus 180 ~------------~~~~~d~~llDt~G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 180 M------------KARGYDLLFVDTAGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp H------------HHHTCSEEEECCCCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred H------------HhCCCCEEEecCCCCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 1 00010000000011110 0112246677999999999999999 55566 444443 33
Q ss_pred HHHHHhc--CCcEEEEeccCchhH
Q psy1502 515 RTIRKKF--ADCTVLTIAHRLHTI 536 (597)
Q Consensus 515 ~~l~~~~--~~~TvI~IaHrlsti 536 (597)
+.+.+.. .+.|+|++||.-.+.
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 3332221 268999999976543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-17 Score=160.33 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=113.8
Q ss_pred CCCCccceeeeE-EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc---CcEEEeCCCCC
Q psy1502 351 LSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS---NISIIPQDPVL 425 (597)
Q Consensus 351 ~~~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~---~I~~V~Q~~~L 425 (597)
+.+-+.|+++.. .+++|+.++|+||+|||||||++.|++.. +.+|.+.+.+.+. +.+.++. .+++.+|+..
T Consensus 6 ~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 81 (235)
T 2w0m_A 6 STGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI- 81 (235)
T ss_dssp CCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB-
T ss_pred cCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh-
Confidence 344567888887 89999999999999999999999999865 5678888766544 3333322 3444444321
Q ss_pred CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCC
Q psy1502 426 FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATA 503 (597)
Q Consensus 426 F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTS 503 (597)
.+++...+..... . + .-.+- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 82 -----~~~~~~~~~~~~~--------------~----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 82 -----EKKLIIIDALMKE--------------K----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp -----TTTEEEEECCC-----------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred -----hCCEEEEeccccc--------------c----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 1122111111100 0 0 00011 1338999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHhc--CCcEEEEeccCc--------hhHh-hcCEEEEEeCC
Q psy1502 504 NV--DPKTDLLIQRTIRKKF--ADCTVLTIAHRL--------HTIM-DSDKVLVMDSG 548 (597)
Q Consensus 504 aL--D~~te~~I~~~l~~~~--~~~TvI~IaHrl--------sti~-~~D~Iivl~~G 548 (597)
.+ |+.....+.+.|.++. .++|+|+++|.. ..+. .||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988888888887764 378999999998 3455 59999999764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-19 Score=176.48 Aligned_cols=148 Identities=11% Similarity=0.181 Sum_probs=104.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC--CCCC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF--EKYP 441 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~--~~~~ 441 (597)
.++|+++||+||||||||||+++|+|++++.| ..+++|+||.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC------------------CceEEEecCCCcCCHHHHHHhcccccCCCC
Confidence 57899999999999999999999999986545 368899999999998888887421 1111
Q ss_pred hHHHHHHHHHhcHHHHHHhc-C--CCchhhhCCCCCCChhHHHHHHHH-HHHccCCCEEEeecCC-----------CCCC
Q psy1502 442 DYVLWTALQEVELKDMIMEG-A--GLNMTVYEGGTNFSVGQRQLICLA-RAIVRNNVILVLDEAT-----------ANVD 506 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l-~--GldT~vge~G~~LSGGQrQRIaIA-RAll~~p~ILILDEaT-----------SaLD 506 (597)
.+.....+.+++..+ . .+++.++++|..+||||+||+++| |+++.+++++++|||. ..+|
T Consensus 81 -----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 81 -----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLE 155 (208)
T ss_dssp -----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEEC
T ss_pred -----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEe
Confidence 111122333445554 3 478889999999999999999999 9999999999999984 2345
Q ss_pred HHHHHHHHHHHHHhcC-CcEEEEeccCch
Q psy1502 507 PKTDLLIQRTIRKKFA-DCTVLTIAHRLH 534 (597)
Q Consensus 507 ~~te~~I~~~l~~~~~-~~TvI~IaHrls 534 (597)
...+..+...+++... ++|...+.||..
T Consensus 156 ~~~~~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 156 VPMADLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5555555444444321 344444444433
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-17 Score=174.41 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=115.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcE--EEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEK--IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...++...++.++
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-------l~g~~~~~~~~~~~~~~i~ 85 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-------FEGEPATHTQPGVQLQSNT 85 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-------C-------CCSSCEEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-------ccCCcCCCCCccceEeeEE
Confidence 366677 788864 34 9999999999999 9999999999999999999984 4555554444444567899
Q ss_pred EEeCCCCCC-CccHHhhcccCCCCChHHHHHHHH---HhcHHHHHHhcCCC--------chh-------hhCCCCCCChh
Q psy1502 418 IIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQ---EVELKDMIMEGAGL--------NMT-------VYEGGTNFSVG 478 (597)
Q Consensus 418 ~V~Q~~~LF-~gTI~eNI~~~~~~~~e~i~~a~~---~a~l~~fI~~l~Gl--------dT~-------vge~G~~LSGG 478 (597)
|++|++.++ +-|+.||+.++...+.+..++.+. .....+++....|. |+. |-+.+..|+-.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 999999887 469999999876655443222211 11223333332122 222 12445567766
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEecc
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KF-ADCTVLTIAH 531 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaH 531 (597)
+ +.|+|+|-.+++|+++|++|..|.++.-..+.+.+.+ +. .+.+++.|+.
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 5 8999999999999999999999988766667777765 43 3667887775
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=152.69 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=97.9
Q ss_pred CCccceeeeE-EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 353 GPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+-+.|+++.. .+++|+.++|+||+|||||||++.+++ .+..+.++++..+ ..+.+.+++.
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~--~~~~~~~~~~---------------- 65 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG--GFSPERLVQM---------------- 65 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC--CCCHHHHHHH----------------
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC--CCCHHHHHHH----------------
Confidence 3345666655 699999999999999999999999999 2223444444322 1122222211
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChh--HHHHHHHHHHHccC-CCEEEeecCCCCCCHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVG--QRQLICLARAIVRN-NVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGG--QrQRIaIARAll~~-p~ILILDEaTSaLD~~ 508 (597)
... ...+.++ +...+ .+ ..+|++ |+|+++.+|+++++ |+++|+||||+.+|+.
T Consensus 66 --~~~-~~~~~~~------------~~~~~-----~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 66 --AET-RGLNPEE------------ALSRF-----IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp --HHT-TTCCHHH------------HHHHE-----EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred --HHh-cCCChHH------------HhhcE-----EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 000 0011111 11111 01 123344 47899999999986 9999999999999975
Q ss_pred HH--------HHHHHHHHHhcC--CcEEEEeccCch-------------hHh-hcCEEEEEeCC
Q psy1502 509 TD--------LLIQRTIRKKFA--DCTVLTIAHRLH-------------TIM-DSDKVLVMDSG 548 (597)
Q Consensus 509 te--------~~I~~~l~~~~~--~~TvI~IaHrls-------------ti~-~~D~Iivl~~G 548 (597)
.+ ..+.+.|.++.+ ++|+|+++|... .+. .||.|++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 43 334455666543 789999999865 343 59999999764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-16 Score=184.76 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=103.7
Q ss_pred cEEEEeeEEEe-C-----CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRY-L-----SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y-~-----~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~ 411 (597)
.|++++..--. . +++.|++|+||++++|+.++|+||||||||||++.+.++. ...|.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~--------------- 704 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS--------------- 704 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc---------------
Confidence 57777653322 1 2467999999999999999999999999999999997642 11221
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||++..-+ ++.+++-. .. ++.|.+ ..+-..+|+|++|+..|+|+ +.
T Consensus 705 ------~vpa~~~~i--~~~d~i~~--~i------------g~~d~l----------~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 705 ------YVPAEEATI--GIVDGIFT--RM------------GAADNI----------YKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp ------CBSSSEEEE--ECCSEEEE--EC--------------------------------CCHHHHHHHHHHHHHH-CC
T ss_pred ------cccchhhhh--hHHHHHHH--hC------------ChHHHH----------HHhHHHhhHHHHHHHHHHHh-cc
Confidence 222221100 01111110 00 111111 11224689999999999999 89
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHH-HHHHhc--CCcEEEEeccCchhHhhcCE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQR-TIRKKF--ADCTVLTIAHRLHTIMDSDK 541 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~-~l~~~~--~~~TvI~IaHrlsti~~~D~ 541 (597)
+|+++||||||++||+.....+.. .++.+. .++|+|++||.++....||+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999999999999998888864 444442 48999999999988776654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-17 Score=159.36 Aligned_cols=160 Identities=11% Similarity=-0.062 Sum_probs=99.0
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCCh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPD 442 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~ 442 (597)
.+++|+.++|+||||||||||+++|++. +..|.|.+||.++..... -++.++|++|++. .+.|+.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~---- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA---- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH----
Confidence 5789999999999999999999999998 668999999987643221 1345788888765 4567777764310
Q ss_pred HHHHHHHHHhcHHHHHHhc---CCCchhh--hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHH
Q psy1502 443 YVLWTALQEVELKDMIMEG---AGLNMTV--YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517 (597)
Q Consensus 443 e~i~~a~~~a~l~~fI~~l---~GldT~v--ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l 517 (597)
.. .. ..+....++.. .+++..- +.....+|+||+||+++||++.++|+++ +|++....+.+.+
T Consensus 77 -~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 -GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp -HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred -HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 00 00 00000000000 0111111 2334579999999999999999999976 5887766666666
Q ss_pred HHhcCCcEEEEeccCchhHhhcCEE
Q psy1502 518 RKKFADCTVLTIAHRLHTIMDSDKV 542 (597)
Q Consensus 518 ~~~~~~~TvI~IaHrlsti~~~D~I 542 (597)
..+....++++.+|..+.-.-+|+|
T Consensus 145 ~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 145 ADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp TCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred hccCcccccEEECCCCCHHHHHHHH
Confidence 5443222334445543333334444
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=154.19 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=99.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc-cCCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYP 441 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~-~~~~~~ 441 (597)
.+++|+.++|+||+|||||||+..+++... .|.+. .|.+..+ +..+.|++.+... ..+.+++. .+.+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHLS 95 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTSC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhcC
Confidence 378999999999999999999999998543 56663 3544321 3467787766432 22333322 122233
Q ss_pred hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC--CCCHHHH---HHHHHH
Q psy1502 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA--NVDPKTD---LLIQRT 516 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS--aLD~~te---~~I~~~ 516 (597)
.++..++++ .+ ++....+.....||+||+|++ |+++++|+++|+||||+ ++|..+. ..+.+.
T Consensus 96 ~~~~~~~~~---------~l-~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~ 162 (279)
T 1nlf_A 96 AEERQAVAD---------GL-LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR 162 (279)
T ss_dssp HHHHHHHHH---------HE-EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH
T ss_pred hhhhhhccC---------ce-EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHH
Confidence 332222222 21 222234556778999998865 78999999999999999 9998544 677777
Q ss_pred HHHhc--CCcEEEEeccCchhH
Q psy1502 517 IRKKF--ADCTVLTIAHRLHTI 536 (597)
Q Consensus 517 l~~~~--~~~TvI~IaHrlsti 536 (597)
|.++. .++|+|+|+|.....
T Consensus 163 L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 163 MEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHcCCEEEEEecCCCcc
Confidence 77764 379999999987654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-16 Score=152.56 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cH----Hhh
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TL----RKN 433 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI----~eN 433 (597)
-..++|+.++|+||||||||||+++|+|+++ ..|.|.+++.+.+. ..++.++|++|++.+|.. |. .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 3579999999999999999999999999875 47999999887653 236789999999998875 44 466
Q ss_pred cccCCC---CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHH
Q psy1502 434 LDPFEK---YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510 (597)
Q Consensus 434 I~~~~~---~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te 510 (597)
+.+... .+.++ ++.++..++++||| ||+++.
T Consensus 87 ~~~~~~~yg~~~~~-----------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 87 AEVFGNYYGTSREA-----------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEETTEEEEEEHHH-----------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHhccCCCCHHH-----------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 654221 11111 22333346999999 999999
Q ss_pred HHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 511 ~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
..+.+.+. .+.|+++++|+++.+.. |+ ++.|
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG 151 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG 151 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC
Confidence 99988775 57899999999998876 33 5666
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-16 Score=177.56 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=107.7
Q ss_pred cEEEEeeEEEe-C---CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCCCChHHHh
Q psy1502 340 KIEFQNTNVRY-L---SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 340 ~I~f~nVsf~Y-~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~~~~~~lr 413 (597)
.|++++..--. + +++.+++|+||+ ++|+.++|+||||||||||+++|+|+. . ..|.. +. . -+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~------vp---a--~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY------VP---A--QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC------BS---S--SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc------cc---h--hc
Confidence 47777643211 1 345799999999 999999999999999999999999974 2 33421 10 0 12
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
..+++++| +|. -++.||+.. |. ..+|+|+++ ++.+...+.+
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~--------------------------~~--------stf~~e~~~-~~~il~~a~~ 686 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLAS--------------------------GR--------STFMVEMTE-TANILHNATE 686 (800)
T ss_dssp EEECCCCE---EEEEEC---------------------------------------------CHHHHHH-HHHHHHHCCT
T ss_pred ccceeHHH---HHhhCCHHHHHHh--------------------------hh--------hhhhHHHHH-HHHHHHhccC
Confidence 34666655 332 233333321 11 235666654 4444556899
Q ss_pred CCEEEeecCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLI-QRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I-~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|+++||||||+++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++..
T Consensus 687 psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 999999999888888655544 44455543 3789999999999888899887788877654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-18 Score=175.36 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc---------cCCceEEEcceeCCCCC---------------hHHHhcCcEEE---
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA---------EVEGVIKIDDIDTEDVP---------------LSKLRSNISII--- 419 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~---------~~~G~I~idg~di~~~~---------------~~~lr~~I~~V--- 419 (597)
=+.++|+|++|||||||++.|+|++ ++.|+|.|||.++...+ ...+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999975 36799999999998763 35677889988
Q ss_pred eCCCC-CCCccHHhhcccCCCCChHHHHHHH-HHhcHHHHHHhcCCCchhhhC-----CCCCCChhHHHHHHHHHHHccC
Q psy1502 420 PQDPV-LFSGTLRKNLDPFEKYPDYVLWTAL-QEVELKDMIMEGAGLNMTVYE-----GGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 420 ~Q~~~-LF~gTI~eNI~~~~~~~~e~i~~a~-~~a~l~~fI~~l~GldT~vge-----~G~~LSGGQrQRIaIARAll~~ 492 (597)
+|++. .|+.++.||..++.. ..+.+.. ......+. ..+++.-|.++- .-.++||||+||...+|+++.+
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~-~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQR-YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHH-EEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred HhcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCe-EEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 78876 478899999976531 2222221 00000000 001222222221 0126899999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
|+++ ||| ..+.+.|+++.++.|+++++|+..
T Consensus 160 ~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 160 TDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9987 888 677788887778899999999743
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-15 Score=145.20 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=93.7
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc------CCceEEEcceeCCC-CChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE------VEGVIKIDDIDTED-VPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~------~~G~I~idg~di~~-~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
-+++|+.++|+||+|||||||+..|++ ..+ ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999998 343 46889999876321 1233455667777765 5677
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH-----
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK----- 508 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~----- 508 (597)
+.+....+.++..+.++. +.+.+. -.+|+++++||+|+.+|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~--~~~~~~------------------------------~~~~~lliiD~~~~~~~~~~~~~~ 140 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLLYQ--ASAMMV------------------------------ESRYALLIVDSATALYRTDYSGRG 140 (243)
T ss_dssp EEEEECCSHHHHHHHHHH--HHHHHH------------------------------HSCEEEEEEETSSGGGC-------
T ss_pred eEEEecCCHHHHHHHHHH--HHHHHh------------------------------cCCceEEEEeCchHHHHHHhcCCc
Confidence 765444444443332211 111111 1689999999999999986
Q ss_pred --HH-----HHHHHHHHHhcC--CcEEEEeccCchhHh--------------------hcCEEEEEeCC
Q psy1502 509 --TD-----LLIQRTIRKKFA--DCTVLTIAHRLHTIM--------------------DSDKVLVMDSG 548 (597)
Q Consensus 509 --te-----~~I~~~l~~~~~--~~TvI~IaHrlsti~--------------------~~D~Iivl~~G 548 (597)
++ ..+...|.++.+ ++|+|+++|-..... .||.+++|+.|
T Consensus 141 ~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 141 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 42 233444444332 789999999655432 58999999875
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-17 Score=169.32 Aligned_cols=171 Identities=15% Similarity=0.077 Sum_probs=116.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHHhcC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~lr~~ 415 (597)
|+++|++++|. ...+|+++||++++|+.++|+|++|||||||++.|+|++ |.+|+|.+.|.|+..... ...|.+
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 55677777774 246999999999999999999999999999999999987 578999999998864321 235778
Q ss_pred cEEEeCCCCCCCc-------------cHH-----------------------------hhcccC---CCCC-hHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-------------TLR-----------------------------KNLDPF---EKYP-DYVLWTAL 449 (597)
Q Consensus 416 I~~V~Q~~~LF~g-------------TI~-----------------------------eNI~~~---~~~~-~e~i~~a~ 449 (597)
+++|+|++.+|.. +++ ++.... -+.+ .++.. .+
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~-~i 187 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ-GI 187 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------C
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH-HH
Confidence 9999999998852 112 222100 0000 01110 00
Q ss_pred HHhcHHHHHHhc--CCCchhhhCCCCCCChhHHHHHHHHHHHcc------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc
Q psy1502 450 QEVELKDMIMEG--AGLNMTVYEGGTNFSVGQRQLICLARAIVR------NNVILVLDEATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 450 ~~a~l~~fI~~l--~GldT~vge~G~~LSGGQrQRIaIARAll~------~p~ILILDEaTSaLD~~te~~I~~~l~~~~ 521 (597)
+ .++.+...-. +..|-. ....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 188 ~-~~i~~~~~ivvlNK~Dl~---~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 K-KGIFELADMIAVNKADDG---DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp C-TTHHHHCSEEEEECCSTT---CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred H-HHHhccccEEEEEchhcc---CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0 0111110000 222210 123579999999999999998 688886 99999999999988887754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-14 Score=147.97 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 473 TNFSVGQRQLI------CLARAIVRN-NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 473 ~~LSGGQrQRI------aIARAll~~-p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
..|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|.++..+.|+|+|||++.....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999987 678999999 99999999999999999999999999876667999999999876779999999
Q ss_pred e
Q psy1502 546 D 546 (597)
Q Consensus 546 ~ 546 (597)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-16 Score=143.37 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=71.1
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
+|++++|+ +..+++++||++++|+.++|+||+|||||||+++|+|+.|.+|+|.++|.++.+. ...+ .+|+|++
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~--~~~~---~~~~q~~ 84 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEE--YNIA---GKMIYHF 84 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEE--EEET---TEEEEEE
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeee--ccCC---Ccceecc
Confidence 45666774 3468999999999999999999999999999999999778889999999888521 1112 2899999
Q ss_pred CCCCccHHhhcc
Q psy1502 424 VLFSGTLRKNLD 435 (597)
Q Consensus 424 ~LF~gTI~eNI~ 435 (597)
.+|.-|+.||+.
T Consensus 85 ~l~~ltv~e~l~ 96 (158)
T 1htw_A 85 DLYRLADPEELE 96 (158)
T ss_dssp ECTTCSCTTHHH
T ss_pred ccccCCcHHHHH
Confidence 999879999984
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-14 Score=145.97 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=78.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc-cc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHH
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR-LA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~-l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i 445 (597)
..+.|+||+|+||||+++.|++ ++ +..|.+.++|.+...... -+..+++++|++++.-.. -..+ ..+.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~ 109 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDMG-NNDRIVI 109 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhcC-CcchHHH
Confidence 3499999999999999999999 76 467999999988764333 267899999988652110 0000 1111123
Q ss_pred HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy1502 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525 (597)
Q Consensus 446 ~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~T 525 (597)
.+.++.+ . ...+++..+ .||| +..+|+++|||||++ ||+++.+.+.+.+++..++.+
T Consensus 110 ~~~i~~~-----~-~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 110 QELLKEV-----A-QMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHHH-----T-TTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHH-----H-Hhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 3322211 1 112232222 5676 788999999999999 999999999999998877899
Q ss_pred EEEeccCchhH
Q psy1502 526 VLTIAHRLHTI 536 (597)
Q Consensus 526 vI~IaHrlsti 536 (597)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999997654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-14 Score=150.38 Aligned_cols=169 Identities=14% Similarity=0.208 Sum_probs=110.8
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHH--HhcCcEEEeCCCCCC-Cc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSK--LRSNISIIPQDPVLF-SG 428 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~--lr~~I~~V~Q~~~LF-~g 428 (597)
-+++||++++|++++|||+||||||||++.|+|++ +.+|+|.++|.|..... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 45899999999999999999999999999999988 47899999988875431 122 377899999998766 46
Q ss_pred cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCC-C-----CCCChhHHHHHHHHHHHccC-C-CEEEeec
Q psy1502 429 TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG-G-----TNFSVGQRQLICLARAIVRN-N-VILVLDE 500 (597)
Q Consensus 429 TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~-G-----~~LSGGQrQRIaIARAll~~-p-~ILILDE 500 (597)
|+++|+.+... .|+|..+=+. | .++-.--+|++.++|++..+ | .+|+..+
T Consensus 363 tV~e~l~~a~~----------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 363 VIFDAIQAAKA----------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHH----------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHh----------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 88888864210 1222211111 0 11112235889999988654 5 3555555
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh---------Hh-h-cCEEEEEeCCeEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT---------IM-D-SDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst---------i~-~-~D~Iivl~~G~Ive 552 (597)
||++.|.... .+.+.+. -+.|.+++|| +.. +. . --.|..+-.|+-++
T Consensus 421 attGq~al~~---ak~f~~~-~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~vd 478 (503)
T 2yhs_A 421 ASTGQNAVSQ---AKLFHEA-VGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERIE 478 (503)
T ss_dssp GGGTHHHHHH---HHHHHHH-TCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSGG
T ss_pred CcccHHHHHH---HHHHHhh-cCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCChh
Confidence 8887655432 2334332 3689999999 443 21 1 24666666665433
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-16 Score=168.63 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=120.0
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC--ccH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS--GTL 430 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~--gTI 430 (597)
+.+++++++.+++|+.++|+|||||||||++++|+|+.+ .+|.|+++|.+--..+. .++++++.|... .. .|+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 347899999999999999999999999999999999885 68999999876333221 456788888765 33 366
Q ss_pred Hhhccc----C------CCCChHHHHHHHHHhc-------------HHHHHHhc----CCCchhhh-------CCCCCCC
Q psy1502 431 RKNLDP----F------EKYPDYVLWTALQEVE-------------LKDMIMEG----AGLNMTVY-------EGGTNFS 476 (597)
Q Consensus 431 ~eNI~~----~------~~~~~e~i~~a~~~a~-------------l~~fI~~l----~GldT~vg-------e~G~~LS 476 (597)
++++.. . .+..++|...+++.++ +.+.+..+ .|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 666531 1 2456666666665543 23444443 23332222 1234579
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEE--eccCchhHhh-cC
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLT--IAHRLHTIMD-SD 540 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~--IaHrlsti~~-~D 540 (597)
||||||.++|. + | |++||+++...+.+.|.++.+ ++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988752 1 6 999999887777777766544 678875 8999998864 65
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=137.44 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=107.5
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH----HHhcC--cEEEeCCCCCCC-ccHHhhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS----KLRSN--ISIIPQDPVLFS-GTLRKNL 434 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~----~lr~~--I~~V~Q~~~LF~-gTI~eNI 434 (597)
..++|+.++|||||||||||+++.|+|++ +.+|+|.++|.|+...... .|+++ +.+++|+..++. .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999987 5789999999999776532 34444 559999988875 5888887
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCC--CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~--~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
.++. . .++|..+ ..-|. .-..=.++.-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~-----------~-----------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~-- 259 (328)
T 3e70_C 205 QHAK-----------A-----------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE-- 259 (328)
T ss_dssp HHHH-----------H-----------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--
T ss_pred HHHH-----------h-----------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--
Confidence 5310 0 1122111 10110 001112344569999999999999996665 33322
Q ss_pred HHHHHHHHhcCCcEEEEeccCchhH----------hhcCEEEEEeCCeEEE
Q psy1502 512 LIQRTIRKKFADCTVLTIAHRLHTI----------MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 512 ~I~~~l~~~~~~~TvI~IaHrlsti----------~~~D~Iivl~~G~Ive 552 (597)
..+.+.+. .+.|.|++||--.+. ...-.|..+..|+-++
T Consensus 260 -~~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~ 308 (328)
T 3e70_C 260 -QARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYD 308 (328)
T ss_dssp -HHHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTT
T ss_pred -HHHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCcc
Confidence 22333332 378999999944321 1235788888887665
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-15 Score=144.31 Aligned_cols=154 Identities=13% Similarity=0.082 Sum_probs=104.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC-CccHHhhcccCCCCChHHH
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVL 445 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF-~gTI~eNI~~~~~~~~e~i 445 (597)
|+.++|+||||||||||++.|++ +.+|.+.+||.++... ..+++++|....+ +.|+++|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~--------- 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD--------- 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH---------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH---------
Confidence 68899999999999999999987 5679999998765432 2467777765332 2355555532
Q ss_pred HHHHHHhcHHHHHHhcCCCchhh----hC----CCCCC--ChhHHHHHHHHH------HHccCCCEEEeecCCCCCCHHH
Q psy1502 446 WTALQEVELKDMIMEGAGLNMTV----YE----GGTNF--SVGQRQLICLAR------AIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 446 ~~a~~~a~l~~fI~~l~GldT~v----ge----~G~~L--SGGQrQRIaIAR------All~~p~ILILDEaTSaLD~~t 509 (597)
.++ .+.. .|.+..+ +. .-..+ |+|++|++.++. +++++|+...+|+ ++|++.
T Consensus 65 --~~~-----~~~~--~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 65 --LTV-----NFLL--AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --HHH-----HHHH--TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --HHH-----HHHh--cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 010 1111 1111111 10 00124 889888988888 8999998888884 799987
Q ss_pred HHHHHHHHHHhcC-CcEEEEeccC-chhHhh-cCEEEEEeCCeEEE
Q psy1502 510 DLLIQRTIRKKFA-DCTVLTIAHR-LHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 510 e~~I~~~l~~~~~-~~TvI~IaHr-lsti~~-~D~Iivl~~G~Ive 552 (597)
... .+.+..+.. +.|+|..+|. ++.+.. ||+|+ ++|+++.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 766 777776643 5799999999 988875 99999 9999875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-13 Score=139.84 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=95.8
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh--ccccC------CceEEEcceeCC-CCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF--RLAEV------EGVIKIDDIDTE-DVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~--~l~~~------~G~I~idg~di~-~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
-|++|+.++|+||||||||||+..|+ +..|+ .+.+++|+.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999554 55542 348899987632 1223334566777665 57788
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecCCCCCCHHHH-
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRNNVILVLDEATANVDPKTD- 510 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~p~ILILDEaTSaLD~~te- 510 (597)
+.+....+.++..+.+ .-++++ -.+|+++++||+|+.+|++..
T Consensus 247 i~~~~~~~~~~~~~~l----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 247 VAYARAYNADHQLRLL----------------------------------DAAAQMMSESRFSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp EEEEECCSHHHHHHHH----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred EEEeccCChHHHHHHH----------------------------------HHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence 8764443333322222 112222 147999999999999997643
Q ss_pred -----------HHHHHHHHHhcC--CcEEEEeccCch-------------------hHhh-cCEEEEEeCCe
Q psy1502 511 -----------LLIQRTIRKKFA--DCTVLTIAHRLH-------------------TIMD-SDKVLVMDSGV 549 (597)
Q Consensus 511 -----------~~I~~~l~~~~~--~~TvI~IaHrls-------------------ti~~-~D~Iivl~~G~ 549 (597)
..+.+.|.++.+ +.|+|+|+|-.+ .+.+ ||.+++|++|+
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 456666666543 789999999832 2333 79999998763
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-14 Score=144.65 Aligned_cols=157 Identities=9% Similarity=0.020 Sum_probs=103.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---ccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccC---
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIF---RLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPF--- 437 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~---~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~--- 437 (597)
+++.++|+||+|||||||+++|+ |+. ++.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 876 46799998887642 234556677778777665 4888887420
Q ss_pred --------CCC--ChHHHHHHHHHhcHHHHHHhcCCC--------------chhhhCCCCCCChhHHHHHHHHHHH-ccC
Q psy1502 438 --------EKY--PDYVLWTALQEVELKDMIMEGAGL--------------NMTVYEGGTNFSVGQRQLICLARAI-VRN 492 (597)
Q Consensus 438 --------~~~--~~e~i~~a~~~a~l~~fI~~l~Gl--------------dT~vge~G~~LSGGQrQRIaIARAl-l~~ 492 (597)
... +.++.... ..+.+. +-........||| |+ ||+ +.+
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l----------~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEAL----------DKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHH----------HTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSC
T ss_pred cCCCeEEEECCCCCHHHHHHH----------HhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCC
Confidence 011 11111111 111111 1112333457898 66 888 999
Q ss_pred CCEEEee----cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 493 NVILVLD----EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 493 p~ILILD----EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
|++++|| |||++||..++..+.+.+.++.+... .-+....+.++++++|..
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~-----~v~~~~~~~~~~~~id~~ 219 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAK-----PVIELYKSRGVLHQFSGT 219 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHH-----HHHHHHHHTTCEEEEECS
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHHhHH-----HHHHHHhhcCcEEEECCC
Confidence 9999999 99999999999999998877643210 001122334567777653
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-13 Score=121.78 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=69.3
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCc--eEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G--~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
+|+++ +|+.++|+||+|||||||++++++.+.++| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------------
Confidence 57766 899999999999999999999999876567 666655443211
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHH
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I 513 (597)
+++.+|++|+|||+++ +|...+..+
T Consensus 79 ------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l 103 (149)
T 2kjq_A 79 ------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALL 103 (149)
T ss_dssp ------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHH
T ss_pred ------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHH
Confidence 2467899999999998 555557778
Q ss_pred HHHHHHhcC-CcE-EEEeccC
Q psy1502 514 QRTIRKKFA-DCT-VLTIAHR 532 (597)
Q Consensus 514 ~~~l~~~~~-~~T-vI~IaHr 532 (597)
.+.++++.. ++| +|+++|+
T Consensus 104 ~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 104 FSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHcCCcEEEEECCC
Confidence 888876543 577 7776765
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-15 Score=159.45 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=88.8
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-----hHHHhcCc
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-----LSKLRSNI 416 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-----~~~lr~~I 416 (597)
++|++|.|+ ...+|+++ + .++|+.++|+||||||||||+++|+|++ +++|+|.++|.++. +. ...++.++
T Consensus 146 l~~Lg~~~~-~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie-~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 146 LHSLGMTAH-NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE-FDIDGIGQTQVNPRV 221 (418)
T ss_dssp GGGSCCCHH-HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC-SCCSSSEEEECBGGG
T ss_pred HHHcCCCHH-HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch-hccCCcceEEEcccc
Confidence 344444442 12367777 4 3899999999999999999999999987 46899999998874 22 12234556
Q ss_pred EEEe---------CCCCCC--C-----ccHHhhcccC---C------CC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhC
Q psy1502 417 SIIP---------QDPVLF--S-----GTLRKNLDPF---E------KY-PDYVLWTALQEVELKDMIMEGAGLNMTVYE 470 (597)
Q Consensus 417 ~~V~---------Q~~~LF--~-----gTI~eNI~~~---~------~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge 470 (597)
++++ |+|.++ . .|+.+|+... . .. +..+..+.+... |++...
T Consensus 222 g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l----------gl~~~~-- 289 (418)
T 1p9r_A 222 DMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM----------GIEPFL-- 289 (418)
T ss_dssp TBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH----------TCCHHH--
T ss_pred CcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc----------CCcHHH--
Confidence 5544 777653 2 3677776421 0 01 112222222222 333222
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
....|||||+|| ||||+..+|++..
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 345899999999 9999999999875
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-13 Score=138.69 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=80.6
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEc-ceeCCCCChHHHhcCcEEEeCCCCCCCc-cHH
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKID-DIDTEDVPLSKLRSNISIIPQDPVLFSG-TLR 431 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~id-g~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~ 431 (597)
-++++++. .+|++++|+||||||||||+++|+|+. +..|+|.++ |.+.. ...+.+++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 589999999999999999999999976 467999987 76643 2346789999999998875 899
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
++-.. ..+.+++.+.. .++.+. .|+....+....+|| ||+||++||++++
T Consensus 280 e~~l~--~l~~~e~~~~~-----~e~l~~-~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQGF-----VEFHDY-LGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC--CCCHHHHHHTS-----GGGGGG-TTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc--CCCHHHHHHHH-----HHHHHH-cCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 97432 34444443221 122222 355555566677899 9999999999863
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-12 Score=119.47 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=74.2
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK 439 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~ 439 (597)
+|++++|+.++|+||+|+|||||++.+++... .+|...+ |+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~~-------------------- 73 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------FF-------------------- 73 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------EE--------------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------EE--------------------
Confidence 56788999999999999999999999999763 5553111 11
Q ss_pred CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC-CCCHHHHHHHHHHHH
Q psy1502 440 YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA-NVDPKTDLLIQRTIR 518 (597)
Q Consensus 440 ~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~te~~I~~~l~ 518 (597)
+-.++.+.+. ... ..+... -+...+.+|++|+||||++ ++|+.....+.+.++
T Consensus 74 -~~~~~~~~~~--------~~~-------~~~~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~ 127 (180)
T 3ec2_A 74 -DTKDLIFRLK--------HLM-------DEGKDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIIT 127 (180)
T ss_dssp -EHHHHHHHHH--------HHH-------HHTCCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHH
T ss_pred -EHHHHHHHHH--------HHh-------cCchHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 1111111111 000 000000 1222355999999999996 899999888888887
Q ss_pred Hhc-CCcEEEEeccCchh
Q psy1502 519 KKF-ADCTVLTIAHRLHT 535 (597)
Q Consensus 519 ~~~-~~~TvI~IaHrlst 535 (597)
... .++|+|++||+...
T Consensus 128 ~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 128 YRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTTCEEEEECCCCSC
T ss_pred HHHHcCCCEEEEcCCChh
Confidence 665 68899999998743
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-14 Score=146.69 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=104.1
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC-CCCC-ccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP-VLFS-GTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~-~LF~-gTI~ 431 (597)
+.+++++++++++| ++|+||+|||||||++.|++.... |.|.++|.++.+......++++++++|++ ..+. -++.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 45899999999999 999999999999999999997644 79999999987766666678899999986 3443 4778
Q ss_pred hhcccCCCC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC-------
Q psy1502 432 KNLDPFEKY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA------- 503 (597)
Q Consensus 432 eNI~~~~~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS------- 503 (597)
||+...... ...+. . .....+.+.-..|||||+||..|++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-~---------------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G---------------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCCcc-h---------------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 888653211 11110 0 0111112222368999999999999999999975 99974
Q ss_pred -----CCCHHHHHHHHHHHH
Q psy1502 504 -----NVDPKTDLLIQRTIR 518 (597)
Q Consensus 504 -----aLD~~te~~I~~~l~ 518 (597)
.-|.+....|.+.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 336777777766543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-12 Score=120.02 Aligned_cols=137 Identities=17% Similarity=0.119 Sum_probs=88.3
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHhhcccC--
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPF-- 437 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~-- 437 (597)
|+++++|+.++|+||||||||||+++|+|++| .+.+++.++........+..++|++|++.+|.. +..+|+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHAT 77 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeee
Confidence 57889999999999999999999999999875 688888887766655567889999999998864 556665321
Q ss_pred --C---CCChHHHHHHHHHh----------cHHHHHHhc-CC------------CchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 438 --E---KYPDYVLWTALQEV----------ELKDMIMEG-AG------------LNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 438 --~---~~~~e~i~~a~~~a----------~l~~fI~~l-~G------------ldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
. ..+.+++.++++.. ++....... +. +...+-++|..-....++|++-++..
T Consensus 78 ~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~ 157 (205)
T 3tr0_A 78 IYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREE 157 (205)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHH
T ss_pred eecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1 12334555554432 222222111 11 11224456655556678888888776
Q ss_pred c---cCCCEEEeec
Q psy1502 490 V---RNNVILVLDE 500 (597)
Q Consensus 490 l---~~p~ILILDE 500 (597)
. +.++.+|.++
T Consensus 158 ~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 158 MAHYKEFDYLVVND 171 (205)
T ss_dssp HTTGGGCSEEEECS
T ss_pred HhcccCCCEEEECC
Confidence 5 3567777654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-12 Score=137.54 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=94.8
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~ 435 (597)
--++++|+++.|+.++|||++|||||||++.|++..+ .+.+.+... +...+++|+|+. -..-++.|+..
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftT-----l~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTT-----LSPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCS-----SCCEEEEEECSS-SCEEEEEECCC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccce-----ecceeeEEEecC-cceEEEEeccc
Confidence 3579999999999999999999999999999999755 344444433 345688888875 11223444432
Q ss_pred cCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 436 PFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 436 ~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
+.+. .... ..+..+.+. .. +.=+|-. .+.-.+||+||+||.++||+|..+|.|+++ +.+|...
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~l---L~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VL---LYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EE---EEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hh---hEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 2111 1111 111111110 00 0111111 112246999999999999999999999999 8899876
Q ss_pred HHHHHHHHHHhc--CCcEEEEecc
Q psy1502 510 DLLIQRTIRKKF--ADCTVLTIAH 531 (597)
Q Consensus 510 e~~I~~~l~~~~--~~~TvI~IaH 531 (597)
. ...+.+.+.. .+.+++.||.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCT
T ss_pred H-HHHHHHHHHHHhcCCeEEEEEC
Confidence 5 3334443332 2557776653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-13 Score=134.07 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=100.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc----cCCceEEE--------cceeCCC-CChHHHhcCcEEEeCCC------CCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA----EVEGVIKI--------DDIDTED-VPLSKLRSNISIIPQDP------VLF 426 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~----~~~G~I~i--------dg~di~~-~~~~~lr~~I~~V~Q~~------~LF 426 (597)
.+.+++|+|++||||||++++|.+.+ ++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999854 46799887 7887763 45677899999999986 455
Q ss_pred CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhh-hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC
Q psy1502 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTV-YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 427 ~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~v-ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS 503 (597)
..++.+++ .++++.+++..+.+++++... .+.++.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 55666665 467888999999999998875 6666655 3568888987 57778899999999988753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-13 Score=142.37 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=93.0
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEE-------------------cCCcEEEEEcCCCCCHHHHHHHHhccc---cCCc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITI-------------------HPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEG 395 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I-------------------~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G 395 (597)
.+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++ |++|
T Consensus 35 ~~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CTTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 34689999999993 6999999988 899999999999999999999999975 5689
Q ss_pred eEEE---cceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhC
Q psy1502 396 VIKI---DDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYE 470 (597)
Q Consensus 396 ~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge 470 (597)
+|.+ ||.+.. ...++.+++| |+..++. -|+.+|+.+ +..+ .|-. .+--
T Consensus 112 ~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~---------------------~~~l~~~~~-~i~~ 164 (308)
T 1sq5_A 112 RVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF---------------------VSDLKSGVP-NVTA 164 (308)
T ss_dssp CEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH---------------------HHHHTTTCS-CEEE
T ss_pred eEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH---------------------HHHHhCCCC-ceec
Confidence 9999 998742 2456778888 7654432 355555432 1111 1111 0000
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
--.+.+.+ +|++.+.+.+.+|+++|+|.+....|.
T Consensus 165 P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 165 PVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00111222 334333355678999999999987774
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-12 Score=130.39 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=74.9
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEE---cceeCCCCChHHHhcCcEEEeCCCCCC------CccHHh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKI---DDIDTEDVPLSKLRSNISIIPQDPVLF------SGTLRK 432 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~LF------~gTI~e 432 (597)
++.+|++++++||||||||||++.|. +. +.+|+|.+ +|.++.........+.+|||+|+|-+. +-|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 87 57899999 999887644221124799999999653 4578 8
Q ss_pred hc--ccC---------CC-----CChHHHHHHHHHhcHHH-HHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 433 NL--DPF---------EK-----YPDYVLWTALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 433 NI--~~~---------~~-----~~~e~i~~a~~~a~l~~-fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|+ .+. .+ .....+.++++..++.+ .. +.. ...|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~------~~~----~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERY------KSY----LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHH------HHH----HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH------HHH----HHHHHHHHHHHHHHhc
Confidence 88 332 11 12345677777666643 22 222 2368998888999987
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-11 Score=122.31 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=100.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+.++++++.|+... ++++|+ +|+.++++|++|+||||++..|++++. ..|+|.+.|.|.+.-... .
T Consensus 77 ~~~~~l~~~~~~~~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---~----- 143 (295)
T 1ls1_A 77 TVYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---E----- 143 (295)
T ss_dssp HHHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---H-----
T ss_pred HHHHHHHHHHCCCC---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---H-----
Confidence 56778888885322 688888 999999999999999999999999875 679999988876531110 0
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
++...++. .|++-... |..-...+-||.+|+++...+++++|+|
T Consensus 144 ------------------------ql~~~~~~----------~~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~viiD 187 (295)
T 1ls1_A 144 ------------------------QLRLLGEK----------VGVPVLEV--MDGESPESIRRRVEEKARLEARDLILVD 187 (295)
T ss_dssp ------------------------HHHHHHHH----------HTCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ------------------------HHHHhccc----------CCeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 00000110 12322111 1122344568999999988999999999
Q ss_pred cC-CCCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q psy1502 500 EA-TANVDPKTDLLIQRTIRKKFADCTVLTIAH 531 (597)
Q Consensus 500 Ea-TSaLD~~te~~I~~~l~~~~~~~TvI~IaH 531 (597)
|| ++++|...-..+.+..+...++.+++++..
T Consensus 188 tpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 188 TAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred CCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 99 999999888888777777767777665543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-13 Score=131.46 Aligned_cols=163 Identities=9% Similarity=0.077 Sum_probs=65.7
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-ccccCCceEEEcceeCCCCChHH-HhcCcEEEeCCCCCCCc-cHH
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK-LRSNISIIPQDPVLFSG-TLR 431 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~~~~G~I~idg~di~~~~~~~-lr~~I~~V~Q~~~LF~g-TI~ 431 (597)
...+++||++++|+.++|+||||||||||+++|+ +++++ ..++.++..-.+.. .+..+.|++|++..|.. +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----cccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 4678999999999999999999999999999999 98742 12232222111100 11234456665554432 223
Q ss_pred hhcc----cCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh--hHHHHH-HHHH-HHccCCCEEEeec
Q psy1502 432 KNLD----PFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSV--GQRQLI-CLAR-AIVRNNVILVLDE 500 (597)
Q Consensus 432 eNI~----~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG--GQrQRI-aIAR-All~~p~ILILDE 500 (597)
+|+. +.. ..+.+++.++++. |....+. ..+.| .-+++. .-++ .++..|+..++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDK-----------GVSTLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHH-----------TCEEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred CceehhhhhccccCCCCHHHHHHHHHc-----------CCeEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 3332 100 1112233333322 1111110 00001 113444 2222 3467888888999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
.+++.|..++..+++.|.+..+. +.....+|.|++
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~---------~~~~~~~d~vI~ 191 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFE---------ISHCEAYDYVIV 191 (231)
T ss_dssp C--------------CHHHHHHH---------HTTGGGSSEEEE
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH---------HhhhcCCeEEEE
Confidence 99999999998888777655432 122356777666
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-11 Score=122.82 Aligned_cols=96 Identities=17% Similarity=0.022 Sum_probs=64.3
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEE---cceeCCCCChHHHhcCcEEEeCCCC-------------
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKI---DDIDTEDVPLSKLRSNISIIPQDPV------------- 424 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~------------- 424 (597)
|++.+|+.++|+||||||||||+++|.|+. |.+|+|.+ +|.++.........+.+++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999987 57899999 9999876542211247999999985
Q ss_pred ---CCC-ccHHhhcccCC----CCChHHHHHHHHHhcH-HHHH
Q psy1502 425 ---LFS-GTLRKNLDPFE----KYPDYVLWTALQEVEL-KDMI 458 (597)
Q Consensus 425 ---LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l-~~fI 458 (597)
+|. -|+ +|+.+.. ......+.++++..++ .+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~ 285 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRY 285 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHH
Confidence 454 478 9998732 2234568899998888 3443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-11 Score=121.60 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=78.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh---ccc-cCCceEE--------EcceeCC-CCChHHHhcCcEEEeC------CCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIF---RLA-EVEGVIK--------IDDIDTE-DVPLSKLRSNISIIPQ------DPVL 425 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~---~l~-~~~G~I~--------idg~di~-~~~~~~lr~~I~~V~Q------~~~L 425 (597)
++|+.|+|+|||||||||++++|+ |++ +++|.|. .+|.++. ......+++++++++| ..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 876 5789999 9999984 5568889999999995 4567
Q ss_pred CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhC
Q psy1502 426 FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYE 470 (597)
Q Consensus 426 F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge 470 (597)
++.++.+||. .+++..++..+..++.+... ..+...+++
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 7788888875 35666666666666666554 444444443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=117.75 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=70.5
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
+++..++|+.++|+|++||||||++..|++++. ..|+|.+.+.|.... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence 345567899999999999999999999999874 678999888775310 0 00
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH---HHHHHHccCCCEEEeecCCC
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI---CLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI---aIARAll~~p~ILILDEaTS 503 (597)
+++.. +.+. .|++.. ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 ----eqL~~---------~~~~-~gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKI---------WGER-VGATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHH---------HHHH-HTCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHH---------HHHH-cCCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11211 2111 133321 24589999999 99999999999999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-10 Score=115.39 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=90.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChH
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e 443 (597)
++|+.++++|++||||||++..|++.+. .+| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 4799999999999999999999999875 578 35667777763 22222222
Q ss_pred HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--
Q psy1502 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-- 521 (597)
Q Consensus 444 ~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-- 521 (597)
...++. .|++-... ..++..+.+|+++ ++|+++|+| |+++|+..+..+.+...-..
T Consensus 154 --~~~~~~----------~gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~ 211 (296)
T 2px0_A 154 --KTYAEL----------LQAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFE 211 (296)
T ss_dssp --HHHHTT----------TTCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCC
T ss_pred --HHHHHh----------cCCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhc
Confidence 111111 22221111 1234567788864 999999999 99999877665544332221
Q ss_pred -CCcEEEEe--ccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 522 -ADCTVLTI--AHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 522 -~~~TvI~I--aHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+.+++++ +|....+.. ||++..++.|.|+-
T Consensus 212 ~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 212 SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 33456666 898877765 78777777777775
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-10 Score=124.73 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH--------H
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK--------L 412 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~--------l 412 (597)
.+.++++.+ .++|+|+||+|++ +++||+||||||||||+++|+|++ |++|+|.++|.++...+... +
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~ 83 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhc
Confidence 456665533 2479999999999 999999999999999999999987 57899999999997655331 2
Q ss_pred hcCcEEEeCCCC
Q psy1502 413 RSNISIIPQDPV 424 (597)
Q Consensus 413 r~~I~~V~Q~~~ 424 (597)
+..+.|+.+++.
T Consensus 84 ~~~~~~~~~~~~ 95 (483)
T 3euj_A 84 KAGVCYAVLETV 95 (483)
T ss_dssp CSSEEEEEEEEE
T ss_pred CCCceEEEEehh
Confidence 334567766643
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-12 Score=132.06 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=97.3
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+++++...|. .+.+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.+++++|
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 126 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE 126 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHH
Confidence 4566666664 346899999999999 99999999999999999999764 7999999988765555555677888898
Q ss_pred CCC-CCC-ccHHhhcc-cCCCC------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 422 DPV-LFS-GTLRKNLD-PFEKY------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 422 ~~~-LF~-gTI~eNI~-~~~~~------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++. .+. -++.||+. ++... ..++..+.+ ..++ ..|||||+||..+|+|+..+
T Consensus 127 ~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll--------------~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL--------------VEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH--------------HHHTTCCTTCCEEEEEEESC
T ss_pred HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH--------------HHHhCCCCCCCEEEEEecCC
Confidence 864 343 46678873 22110 112221111 1111 13789999999999999999
Q ss_pred CCEEEeecCC
Q psy1502 493 NVILVLDEAT 502 (597)
Q Consensus 493 p~ILILDEaT 502 (597)
|++ ||++.
T Consensus 188 p~~--ld~~l 195 (278)
T 1iy2_A 188 PDI--LDPAL 195 (278)
T ss_dssp TTS--SCHHH
T ss_pred chh--CCHhH
Confidence 987 68764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.5e-10 Score=108.63 Aligned_cols=168 Identities=12% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCccceee-eEEEcCCcEEEEEcCCCCCHHHHHHHHh-ccccCC-ceEEEcceeCCCCChHHH---hcCcEEEeCCCCCC
Q psy1502 353 GPRVIKNL-NITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVE-GVIKIDDIDTEDVPLSKL---RSNISIIPQDPVLF 426 (597)
Q Consensus 353 ~~~vL~~i-sl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~~~~-G~I~idg~di~~~~~~~l---r~~I~~V~Q~~~LF 426 (597)
+-+.|+++ .--+++|+.++|+||+|||||||+.-++ ...+.. +.+.+++.. +.+.+ ..++++.+|+...
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~- 82 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE- 82 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH-
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh-
Confidence 33456665 5679999999999999999999966554 454444 455555432 22332 2345665554310
Q ss_pred CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecCCCC
Q psy1502 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV--RNNVILVLDEATAN 504 (597)
Q Consensus 427 ~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll--~~p~ILILDEaTSa 504 (597)
.+|+...+... +.+ + .....+..+-+. +....+....++.++ .+|+++++|++|+-
T Consensus 83 ----~~~l~~~~~~~-~~~-------~------~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 ----KGMFAMVDAFT-AGI-------G------KSKEYEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ----HTSEEEEECST-TTT-------C------C--CCCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ----CCcEEEEecch-hhc-------c------cccccccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 11222110000 000 0 000000001111 122334444444444 47999999999988
Q ss_pred C--CHHHHHHHHHHHHHhc--CCcEEEEeccCchh---------HhhcCEEEEEeC
Q psy1502 505 V--DPKTDLLIQRTIRKKF--ADCTVLTIAHRLHT---------IMDSDKVLVMDS 547 (597)
Q Consensus 505 L--D~~te~~I~~~l~~~~--~~~TvI~IaHrlst---------i~~~D~Iivl~~ 547 (597)
+ |+.........+.+.. .++|+|+++|.... ...||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5533344444444432 47899999998765 356899999964
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-10 Score=109.21 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-c-----------CCceEEEcceeCCC--CChHHHhcCcEEEeCCCCCCCc--cHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA-E-----------VEGVIKIDDIDTED--VPLSKLRSNISIIPQDPVLFSG--TLRK 432 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~-~-----------~~G~I~idg~di~~--~~~~~lr~~I~~V~Q~~~LF~g--TI~e 432 (597)
+++|+|++|||||||++.+.+.. + .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 78999999999999999999863 2 36899999976531 1211122333444432111110 1111
Q ss_pred hcccCCCCChHHHHHHHHHhcHHHHHHhc--CCCc-hhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQEVELKDMIMEG--AGLN-MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~a~l~~fI~~l--~Gld-T~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
+ ++..-.+.++. ..+.+... .+.- -.++.+ ..|..-..+...+||++.++|+++++| |||+|.++
T Consensus 111 ~-------~~~~s~~~~~~--~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 I-------AKHLTYENVER--WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp T-------TCHHHHHTHHH--HHHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred C-------cCHHHHHHHHH--HHHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1 11111111100 00011110 0100 011221 122222224578999999999999999 99999999
Q ss_pred HHHHHHHHHHh
Q psy1502 510 DLLIQRTIRKK 520 (597)
Q Consensus 510 e~~I~~~l~~~ 520 (597)
-..+.+.|.+.
T Consensus 179 v~~l~~~l~~~ 189 (191)
T 1oix_A 179 VEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-12 Score=126.78 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=98.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
.+++++...|. .+.+++++++++++| ++|+||+|||||||++.|++... .|.+.++|.++.+......++.+++++
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45677777774 346899999999999 99999999999999999999764 789999998876554445566788888
Q ss_pred CCCC-CCC-ccHHhhcc-cCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 421 QDPV-LFS-GTLRKNLD-PFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 421 Q~~~-LF~-gTI~eNI~-~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
|+.. .+. -++.||+. ++.. ...++..+.+ ..++ ..|||||+||..+|+|+..
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll--------------~~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL--------------VEMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH--------------HHHHTCCTTCCEEEEEEES
T ss_pred HHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH--------------HHHhCCCCCCCEEEEEccC
Confidence 8764 333 46677773 2211 0112211111 1111 1367999999999999999
Q ss_pred CCCEEEeecCCC
Q psy1502 492 NNVILVLDEATA 503 (597)
Q Consensus 492 ~p~ILILDEaTS 503 (597)
+|++ ||++.-
T Consensus 163 ~p~~--ld~~l~ 172 (254)
T 1ixz_A 163 RPDI--LDPALL 172 (254)
T ss_dssp CGGG--SCGGGG
T ss_pred Cchh--CCHHHc
Confidence 9997 788764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=122.78 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=93.6
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc--
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-- 435 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~-- 435 (597)
|+++++|.+++|+|++|+|||||++.|++.. +..|+| .+|.++.++.....++.|++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 4678899999999999999999999999764 357999 8999999999999999999999999999999999984
Q ss_pred cCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHH
Q psy1502 436 PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515 (597)
Q Consensus 436 ~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~ 515 (597)
+|..--..++..+++. .++-++++| ||+++|+.++..+..
T Consensus 82 pG~~~f~~~~~~~l~~---------------------------------------ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEA---------------------------------------ADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp CCSGGGHHHHHHHHHH---------------------------------------CSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred CCccchHHHHHHHHhh---------------------------------------cCcEEEEEc-CCcccchhHHHHHHH
Confidence 4321001222222221 244566666 777777777755443
Q ss_pred HHHHhcCCcEEEEeccCchh
Q psy1502 516 TIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 516 ~l~~~~~~~TvI~IaHrlst 535 (597)
+.. .+.++|++.|.+..
T Consensus 122 ~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHH---TTCCEEEEEECGGG
T ss_pred HHH---ccCCEEEEecCCch
Confidence 322 25666777777664
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.6e-10 Score=121.48 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=94.8
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~ 435 (597)
-+++++.++..++|+|+|||||||+++.|.. ++. ..|++.+.+.|.+......+.. -|+++. ++.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999998875 443 5688988888877655444321 122221 11111
Q ss_pred cCCCCChHHHHHHHHHhc--HHHHHHhc--CCCchhhhCC---CCCCChhHHHHH----------HHHHHHccCCC-EEE
Q psy1502 436 PFEKYPDYVLWTALQEVE--LKDMIMEG--AGLNMTVYEG---GTNFSVGQRQLI----------CLARAIVRNNV-ILV 497 (597)
Q Consensus 436 ~~~~~~~e~i~~a~~~a~--l~~fI~~l--~GldT~vge~---G~~LSGGQrQRI----------aIARAll~~p~-ILI 497 (597)
.++..++++.+. +.+-.+.+ .|+...-+-+ ...+||||+||. ++|+++-..|. +++
T Consensus 229 ------~~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 229 ------MKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 122222222111 11100111 2333222111 124788988763 46788888998 788
Q ss_pred eecCCCCCCHHHHHHHHHHHHH---hcC--CcEEEEeccCch
Q psy1502 498 LDEATANVDPKTDLLIQRTIRK---KFA--DCTVLTIAHRLH 534 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~---~~~--~~TvI~IaHrls 534 (597)
+||+++.+|.. ...+.+.|.+ ..+ +.++|++|||++
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999999843 2334444433 222 679999999998
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-12 Score=131.07 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=95.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCC-------cEEEEEcCCCCCHHHHHHHHhccc-----cCCceEEEcceeCCCCC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPK-------EKIGIVGRTGAGKSSLIAAIFRLA-----EVEGVIKIDDIDTEDVP 408 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G-------~~vaIVG~SGsGKSTL~~LL~~l~-----~~~G~I~idg~di~~~~ 408 (597)
++.++++..|+ ++.+++++++.+++| +.++|+||+|+|||||+++|++.. +.+|.+..++.++..+.
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 34455555564 346899999999877 889999999999999999999864 45788887776654321
Q ss_pred hHHHhcCcEEEeCCCCCCCccHHhhcccC-CCC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 409 LSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 409 ~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
....+..|.+++|...++. ++.|++... ++. + ... ..+.+ ...... -++.. ...+-..||+|+||
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~~i--~~~l~~-~~li~-at~~~~~Ls~~l~s 169 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAKSI--RIDIQP-FTLVG-ATTRSGLLSSPLRS 169 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CC-CEEEE-EESCGGGSCHHHHT
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccccc--cccCCC-eEEEE-ecCCcccCCHHHHH
Confidence 1112457999999887765 777777321 110 0 000 00100 011110 11110 11223489999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~ 520 (597)
|++++ ..||+.+...+.+.|++.
T Consensus 170 R~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 170 RFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp TCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred hcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 98765 567776666666666554
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-10 Score=113.57 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh--------H
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL--------S 410 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~--------~ 410 (597)
.|+++|++..|.. +|++++ +.++|+||||||||||+++|+++. |++|.|.++|.++...++ .
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 4889998765531 456666 899999999999999999999975 688999999999844332 2
Q ss_pred HHhcCcEEEeCC
Q psy1502 411 KLRSNISIIPQD 422 (597)
Q Consensus 411 ~lr~~I~~V~Q~ 422 (597)
..+..++||+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 346789999985
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-11 Score=129.17 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=102.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc------------cc-cCCceEEEcceeCCCCChHHH--hcC---cEEEeCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR------------LA-EVEGVIKIDDIDTEDVPLSKL--RSN---ISIIPQDPV 424 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~------------l~-~~~G~I~idg~di~~~~~~~l--r~~---I~~V~Q~~~ 424 (597)
.+++|.++||||++|+|||||++.|+| .. |..|.+.++|..+..+. +.. ++. ..++.+.|-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~-~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC-EAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHH-HHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhh-hhcccccccCcceEEEeccc
Confidence 457899999999999999999999998 22 45799999874321110 000 111 235556665
Q ss_pred CCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCC--CEEEeec
Q psy1502 425 LFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNN--VILVLDE 500 (597)
Q Consensus 425 LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p--~ILILDE 500 (597)
+..+ |-.+++. .+....++.+.. +... +..+ ...-..+||+. +| +|+++||
T Consensus 95 l~~~~s~~e~L~-------~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 95 LTKGASTGVGLG-------NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp GCCCCCSSSSSC-------HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred cccCCcHHHHHH-------HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 5542 3233321 112222221110 1111 1221 12233456653 99 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cC-CcEEEEeccCchhHhh-cCEEE-EEeCC-eEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKK-FA-DCTVLTIAHRLHTIMD-SDKVL-VMDSG-VAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~-~~-~~TvI~IaHrlsti~~-~D~Ii-vl~~G-~Ive 552 (597)
+++.+|++.-....+.+... .+ +.|+ ++|.+..+.. ||++. +|++| +++.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceee
Confidence 99999999988888888876 44 3453 4999988865 99999 99999 7763
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-10 Score=127.77 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=103.0
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC-ceEEEcceeCCCCChHHHhcCcEEEeCCC-------
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE-GVIKIDDIDTEDVPLSKLRSNISIIPQDP------- 423 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~-G~I~idg~di~~~~~~~lr~~I~~V~Q~~------- 423 (597)
...+++++++.+++|+.++|+||+|+|||||++.|.++.+ .. |.+.+++.+.... ...++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHH
Confidence 4568999999999999999999999999999999999864 44 8999988776654 35688888764
Q ss_pred ---------------CCC-CccHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 424 ---------------VLF-SGTLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 424 ---------------~LF-~gTI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+.| +.++.+|+...+. .....+... ......+++.. ++.. ......+|+|+.|++..+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~---~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD---VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE---ECCC-CC----CCCCGGGGEECC
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce---EEec-hhhcCCccccccccccCc
Confidence 223 2355556532110 000000000 00011111111 1110 112235999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHH
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~ 519 (597)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 799999999888874
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-09 Score=111.92 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=44.7
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEE---cceeCCCCChHHHhcCcEEEeCCCCCCC-----ccHHh
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKI---DDIDTEDVPLSKLRSNISIIPQDPVLFS-----GTLRK 432 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~LF~-----gTI~e 432 (597)
+++.+|++++|+||||+|||||+|.|+|+. +..|+|.+ +|.++.... +.++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999987 57899999 888876533 222223899999997764 477 8
Q ss_pred hc
Q psy1502 433 NL 434 (597)
Q Consensus 433 NI 434 (597)
|+
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-09 Score=104.47 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=63.2
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF 426 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF 426 (597)
|+...+|+.++|+||||||||||++.|++.++ ..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 44556899999999999999999999998764 2576 799999999999999876 6999999
Q ss_pred CccHHhhcccCCCCChHHHHHH
Q psy1502 427 SGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 427 ~gTI~eNI~~~~~~~~e~i~~a 448 (597)
.+++.+|. +|. +.+.+.++
T Consensus 88 ~~~~~~n~-YGt--~~~~v~~~ 106 (197)
T 3ney_A 88 FGSYQGNM-FGT--KFETVHQI 106 (197)
T ss_dssp EEEETTEE-EEE--EHHHHHHH
T ss_pred hhhhhcee-ccc--chhhHHHH
Confidence 99999995 552 33444443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=107.21 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=107.6
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCc-eEEEcceeCCCCChHHHhcCc-----EEEeCCCCCCC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEG-VIKIDDIDTEDVPLSKLRSNI-----SIIPQDPVLFS 427 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G-~I~idg~di~~~~~~~lr~~I-----~~V~Q~~~LF~ 427 (597)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++.. +..| .+.+.+. +.+.+.+.+++ ++-+|+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 4678887789999999999999999999999998855 3345 5666443 34445554432 222211
Q ss_pred ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecCCCCC
Q psy1502 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV--RNNVILVLDEATANV 505 (597)
Q Consensus 428 gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaL 505 (597)
+.. ...++++..++.+.+ +.+.. .+-.+.+ ...+|++|.+ +.||++. .+|+++|+|+++.-.
T Consensus 263 ------l~~-g~l~~~~~~~~~~a~---~~l~~---~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 263 ------LRT-GKLTPEDWGKLTMAM---GSLSN---AGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHT-SCCCHHHHHHHHHHH---HHHHS---SCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------Hhc-CCCCHHHHHHHHHHH---HHHhc---CCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 111 134555544333222 11211 1222222 3478999875 6778876 589999999999877
Q ss_pred CHH--------HHHHHHHHHHHhcC--CcEEEEecc-----------Cch--------hH-hhcCEEEEEeCCe
Q psy1502 506 DPK--------TDLLIQRTIRKKFA--DCTVLTIAH-----------RLH--------TI-MDSDKVLVMDSGV 549 (597)
Q Consensus 506 D~~--------te~~I~~~l~~~~~--~~TvI~IaH-----------rls--------ti-~~~D~Iivl~~G~ 549 (597)
++. .-..+.+.|+.+.+ ++|+|+++| |+. .+ ..||.|+.|..++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 431 12455566665532 789999999 132 34 3599999997654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-09 Score=103.03 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=64.1
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KY 440 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~ 440 (597)
=++++|+.++|+|+|||||||++++|.+.++ .+.+++||+++|++ +|+.... ..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------------------~~~~i~~D~~~~~~---~~~~~~~~~~ 70 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------------------NCSVISQDDFFKPE---SEIETDKNGF 70 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------------------TEEEEEGGGGBCCG---GGSCBCTTSC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------------------CcEEEeCCccccCH---hHhhccccCC
Confidence 3678899999999999999999999999764 48899999999986 6775432 22
Q ss_pred ChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 441 PDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 441 ~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
.+.++.+++....+.+++... ++. + -..++.|.++ ..+++++|+|=+
T Consensus 71 ~~~~~~~~~~~~~l~~~i~~~l~~~---~---~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 71 LQYDVLEALNMEKMMSAISCWMESA---R---HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp BCCSSGGGBCHHHHHHHHHHHHHHH---T---TSSCCC-------------CCCCEEEEECT
T ss_pred ChhHHHHHhHHHHHHHHHHHHHhCC---C---CCCcCCCeee--------cCCCCEEEEeeh
Confidence 222233344444555555442 211 0 1134555554 456788888644
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-11 Score=125.22 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=89.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
.++|+++|+.+++|+.++|+||+|||||||+++|++.+ +|.+..-+ .+.+.++..+++++|...+ +.|+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~-----~~~~~~~~~lg~~~q~~~~----l~dd 224 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN-----LPLDRLNFELGVAIDQFLV----VFED 224 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS-----SCTTTHHHHHGGGTTCSCE----EETT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe-----ccchhHHHHHHHhcchhHH----HHHH
Confidence 35899999999999999999999999999999999864 57765411 1112234458889998764 3455
Q ss_pred cccCCC----CCh-HHHHHHHHHhcHHHHHHhcCC-----Cch-------------hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 434 LDPFEK----YPD-YVLWTALQEVELKDMIMEGAG-----LNM-------------TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 434 I~~~~~----~~~-e~i~~a~~~a~l~~fI~~l~G-----ldT-------------~vge~G~~LSGGQrQRIaIARAll 490 (597)
++.... ... ..+. ....+.+.+ +| .+| .+..+-..+++|.+||++.+.+++
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~l---dG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~ 298 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYL---DGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFR 298 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHH---HCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECC
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHh---cCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccC
Confidence 543211 110 1110 111222222 22 111 244566778999999999999999
Q ss_pred cCCCEEE-eecCCC
Q psy1502 491 RNNVILV-LDEATA 503 (597)
Q Consensus 491 ~~p~ILI-LDEaTS 503 (597)
.+|++++ ||+|+.
T Consensus 299 ~~pDLliyLd~~~~ 312 (377)
T 1svm_A 299 PKDYLKHCLERSEF 312 (377)
T ss_dssp CCHHHHHHHHTCTH
T ss_pred CCCCeEEEEeCCHH
Confidence 9999998 999987
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=103.34 Aligned_cols=137 Identities=19% Similarity=0.183 Sum_probs=80.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCce-EEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGV-IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY 440 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~-I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~ 440 (597)
-+++|+.+.|.||+|||||||+.-++.-. ...|. ++++... ..+. .+.+++++.+|+ +......
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~~ 122 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQPD 122 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECCS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecCC
Confidence 47899999999999999999988887543 33343 3444321 1111 112223322221 1110000
Q ss_pred ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC--CCEEEeecCCCCC----------CH-
Q psy1502 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN--NVILVLDEATANV----------DP- 507 (597)
Q Consensus 441 ~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~--p~ILILDEaTSaL----------D~- 507 (597)
++ .|-+.+++++.++ |+++|+||+++-+ |+
T Consensus 123 -----------------------------------~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~ 165 (349)
T 2zr9_A 123 -----------------------------------TG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 165 (349)
T ss_dssp -----------------------------------SH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----C
T ss_pred -----------------------------------CH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccch
Confidence 11 2345578888765 9999999999998 32
Q ss_pred --HHHHHHHHHHHHhc-----CCcEEEEeccCch----------------hHh-hcCEEEEEeCCeE
Q psy1502 508 --KTDLLIQRTIRKKF-----ADCTVLTIAHRLH----------------TIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 508 --~te~~I~~~l~~~~-----~~~TvI~IaHrls----------------ti~-~~D~Iivl~~G~I 550 (597)
..++.+.+.+.++. .++|+|+++|-.. .++ .||.++.+..+++
T Consensus 166 ~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 166 VGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 11223444444331 3789999999543 143 5899888876543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-09 Score=101.65 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=54.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEE----------EcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIK----------IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~----------idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
.+|+.++|+||||||||||+++|+++++ ..|.|. +||.+...++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 3799999999999999999999999875 345554 36777777777777764 57889999999999
Q ss_pred hc
Q psy1502 433 NL 434 (597)
Q Consensus 433 NI 434 (597)
|.
T Consensus 80 n~ 81 (180)
T 1kgd_A 80 AM 81 (180)
T ss_dssp EE
T ss_pred cc
Confidence 94
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-09 Score=107.27 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=35.3
Q ss_pred cEEEEee-EEEeCCCCccceeeeEEEcC---CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 340 KIEFQNT-NVRYLSGPRVIKNLNITIHP---KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 340 ~I~f~nV-sf~Y~~~~~vL~~isl~I~~---G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++++|| +|+|.+..++|+|+||+|++ |+.++|+|++||||||+.++|.+.
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4899999 99995456799999999999 999999999999999999999873
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-08 Score=96.88 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc------cC------CceEEEcceeCC----CCC-hHHHhcCcEEEeCCCCCCCccHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA------EV------EGVIKIDDIDTE----DVP-LSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~------~~------~G~I~idg~di~----~~~-~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+++|+|++|||||||++.++|.. |+ .|.|.++|.++. +.. .+.++.......|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~------ 80 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG------ 80 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE------
Confidence 68999999999999999999862 22 578999997652 222 22233222222222110
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhc--CCCch-hhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEG--AGLNM-TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l--~GldT-~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
+.+--+.++..-.+.++. ..+.+... .+.-. .++.+ ..|..-.......||++.++|+++++| |||+|.+
T Consensus 81 --~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~ 153 (199)
T 2f9l_A 81 --ALLVYDIAKHLTYENVER--WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDST 153 (199)
T ss_dssp --EEEEEETTCHHHHHTHHH--HHHHHHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred --EEEEEECcCHHHHHHHHH--HHHHHHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCC
Confidence 000011111111110000 00111110 11100 11221 112111112346699999999999999 9999999
Q ss_pred HHHHHHHHHHHh
Q psy1502 509 TDLLIQRTIRKK 520 (597)
Q Consensus 509 te~~I~~~l~~~ 520 (597)
.-..+.+.|.+.
T Consensus 154 ~i~~l~~~l~~~ 165 (199)
T 2f9l_A 154 NVEEAFKNILTE 165 (199)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888887777554
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-08 Score=94.08 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=45.8
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceE--EEcceeCC
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI--KIDDIDTE 405 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I--~idg~di~ 405 (597)
|++..+. ...+.+..++..++|+.++|+|+||||||||+++|.+.+...|.+ .+||.++.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 4444432 234677888888999999999999999999999999977677988 89987664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=102.88 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=81.2
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
+..++++++.+++| +.|+||+|+|||||++.+.+-.. . .+-++ +..+.
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~---------~------------~f~~i---------s~~~~ 85 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN---------V------------PFFHI---------SGSDF 85 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT---------C------------CEEEE---------EGGGT
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC---------C------------CeeeC---------CHHHH
Confidence 44677888888888 99999999999999999987321 0 00011 00011
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC----------C
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT----------A 503 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT----------S 503 (597)
.. ..+| .|++++|-.+++|....|.||++||+. +
T Consensus 86 ~~------------------------------~~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 86 VE------------------------------LFVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp TT------------------------------CCTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred HH------------------------------HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 00 0112 267899999999999999999999994 3
Q ss_pred CCCHHHHHHHHHHHHHh-----cCCcEEEEeccCchhHh-------hcCEEEEEe
Q psy1502 504 NVDPKTDLLIQRTIRKK-----FADCTVLTIAHRLHTIM-------DSDKVLVMD 546 (597)
Q Consensus 504 aLD~~te~~I~~~l~~~-----~~~~TvI~IaHrlsti~-------~~D~Iivl~ 546 (597)
+.|.+.++.+.+.+..+ ..+..+|..||+++.+. .+|+.+.++
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~ 184 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecC
Confidence 56666665555554433 23568899999986542 467666554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-08 Score=96.22 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=42.9
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
.++.++|+.++|+|++|||||||+++|.+.+ |.+.+||.++..- ....+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 3667899999999999999999999999876 9999999887531 1112235677777643
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-08 Score=104.08 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=51.0
Q ss_pred cccEEEEeeEEEeCCCCccce--------------eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIK--------------NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~--------------~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.|+|+||+|.||.++.+|+ |+++.|.+|++++|+||+|+|||||+++|.++.
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 468999999999998888999 999999999999999999999999999999975
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.7e-08 Score=100.15 Aligned_cols=141 Identities=20% Similarity=0.156 Sum_probs=84.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc------------cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCC----CCccHH-
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA------------EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL----FSGTLR- 431 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~------------~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~L----F~gTI~- 431 (597)
.++|||++|||||||++.|.+.. +..|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 49999999999999999999853 23589999997653 33456766664431 222322
Q ss_pred ----hhcccCCCCChHH--HHHHHHHhcHHHHHHhc--CCCc-hhhhCCCCCCChhHHHHHHHH----HHH-ccCCCEEE
Q psy1502 432 ----KNLDPFEKYPDYV--LWTALQEVELKDMIMEG--AGLN-MTVYEGGTNFSVGQRQLICLA----RAI-VRNNVILV 497 (597)
Q Consensus 432 ----eNI~~~~~~~~e~--i~~a~~~a~l~~fI~~l--~Gld-T~vge~G~~LSGGQrQRIaIA----RAl-l~~p~ILI 497 (597)
+++.+.-++++.. ..+..+ ...+.+..+ .+.- -.|+.+--.+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1222211222211 211111 112233332 1221 123555556788999988887 776 545565
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhc
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~ 521 (597)
+||||+|.+.-..+.+.|.+..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999998888888876643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-08 Score=92.39 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=40.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF 426 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF 426 (597)
++|++|+.++|+|||||||||++++|.+++ |..| +.+ +...++.. ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 468999999999999999999999999987 5444 222 22222211 11234588888876433
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.9e-09 Score=112.53 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=97.0
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+++++...|. .+.+++++++.+++| +.|+||+|+|||||++.|.+... .|.+.++|.++.+.......+++..++|
T Consensus 42 ~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 42 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 4555554453 345899999999999 99999999999999999998754 7889999998876555555667888888
Q ss_pred CCC-CCC-ccHHhhcc-cCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 422 DPV-LFS-GTLRKNLD-PFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 422 ~~~-LF~-gTI~eNI~-~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
+.. .+. -.+.|+|. ++.. ...++..+.+ ..++. .|||||+|+..|++|...+
T Consensus 118 ~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~--------------~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV--------------EMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH--------------HGGGCCSSCCCEEEECCSC
T ss_pred HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH--------------HhcccccCccEEEEEecCC
Confidence 875 333 35677874 2221 1122222221 12221 2668888999999999999
Q ss_pred CCEEEeecCCCC
Q psy1502 493 NVILVLDEATAN 504 (597)
Q Consensus 493 p~ILILDEaTSa 504 (597)
|++ ||||.-.
T Consensus 179 p~~--LD~aLlr 188 (499)
T 2dhr_A 179 PDI--LDPALLR 188 (499)
T ss_dssp GGG--SCTTTSS
T ss_pred hhh--cCccccc
Confidence 987 8988753
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-07 Score=88.48 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
.++|+|++||||||+.+.|.++ |...+|+-++ .+.+. ..+ .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----g~~~id~d~~--------~~~~~-----------------~~~----~~~~--- 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----GVPLVDADVV--------AREVV-----------------AKD----SPLL--- 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----TCCEEEHHHH--------HHHTT-----------------CSS----CHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHHC----CCcccchHHH--------HHHHc-----------------cCC----hHHH---
Confidence 6899999999999999999983 6556654222 11110 000 0111
Q ss_pred HHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy1502 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528 (597)
Q Consensus 449 ~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 528 (597)
.+.... .|+. .-.++|+.+|..+++.++.+|..+-.+ ++.++|.....+.+.+... .+.++|+
T Consensus 48 ------~~i~~~-------~g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~ 110 (206)
T 1jjv_A 48 ------SKIVEH-------FGAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLF 110 (206)
T ss_dssp ------HHHHHH-------HCTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEE
T ss_pred ------HHHHHH-------hCHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEE
Confidence 111111 1221 224788999999999999988754333 3355666666666656543 3568888
Q ss_pred eccCchhH---hhcCEEEEEeCC
Q psy1502 529 IAHRLHTI---MDSDKVLVMDSG 548 (597)
Q Consensus 529 IaHrlsti---~~~D~Iivl~~G 548 (597)
-+|.+... ..||.+++++-.
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~~~ 133 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVDVS 133 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEECC
T ss_pred EechhhhcCcHhhCCEEEEEECC
Confidence 88877654 569999999753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-07 Score=96.77 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=52.9
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHH-----hcCcEEE-eCC
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKL-----RSNISII-PQD 422 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~l-----r~~I~~V-~Q~ 422 (597)
+++++||++++|+.++++|++|+||||++..|++.+ +..|+|.+.+.|+..... ..| +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 346788888999999999999999999999999977 467999999988765431 344 5678888 554
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.5e-07 Score=92.42 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEee-cCCCCCCHHHHHHHHHHHHHhcCCcEEEEec--cCchh
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLD-EATANVDPKTDLLIQRTIRKKFADCTVLTIA--HRLHT 535 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILD-EaTSaLD~~te~~I~~~l~~~~~~~TvI~Ia--Hrlst 535 (597)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..+++.+|+|. |++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 467999999887 66666777788999 9999999999888888888766678888898 77653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.8e-08 Score=109.49 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=52.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCc-eEE-EcceeCCC-------CCh---HHHhcCcEEEeCCCCCCCcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEG-VIK-IDDIDTED-------VPL---SKLRSNISIIPQDPVLFSGT 429 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G-~I~-idg~di~~-------~~~---~~lr~~I~~V~Q~~~LF~gT 429 (597)
.+++|+.++|+|+||||||||+++|++.. +.+| ++. +||.++.+ ++. ..+++++++|+|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 57899999999999999999999999976 5565 784 99987643 222 23556789999873 4
Q ss_pred HHhhccc
Q psy1502 430 LRKNLDP 436 (597)
Q Consensus 430 I~eNI~~ 436 (597)
..+|+..
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 5667643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-07 Score=87.65 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=24.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++++||||++++|+.++|+|++||||||+++.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=8e-07 Score=93.06 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=31.4
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc-CCceEE
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE-VEGVIK 398 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~-~~G~I~ 398 (597)
.+|+++++++| .|++||++|||||||++.|.| +.| .+|.++
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 48999999998 999999999999999999999 545 356554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-07 Score=90.02 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=50.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccC--CceEE----------EcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVIK----------IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~--~G~I~----------idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
++|+.++|+||||||||||++.|++.+++ .+.+. .+|++....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999998753 23333 356666666666666654 5777777777777
Q ss_pred hc
Q psy1502 433 NL 434 (597)
Q Consensus 433 NI 434 (597)
|.
T Consensus 83 ~~ 84 (208)
T 3tau_A 83 NY 84 (208)
T ss_dssp EE
T ss_pred cc
Confidence 73
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.8e-07 Score=91.38 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=25.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.||+|||||||+.-++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 589999999999999999999998875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.6e-08 Score=95.24 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCC------ChHH----HhcCcEEEeCCCCCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDV------PLSK----LRSNISIIPQDPVLFS 427 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~------~~~~----lr~~I~~V~Q~~~LF~ 427 (597)
+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345689999999999999999999999998 78999998876432 1111 2456889999876654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-07 Score=90.77 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=49.4
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
|++|||||..+|++++||||| |+++...+.+. ...+.|+++++|..+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~---~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRA---AETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH---HccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 99886544433 345899999999999777789876654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.7e-07 Score=84.83 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=44.5
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcce--eCCCCC----hHHHhcCcEEEeCCCC
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDI--DTEDVP----LSKLRSNISIIPQDPV 424 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~--di~~~~----~~~lr~~I~~V~Q~~~ 424 (597)
+++++++.+| .++|+||||||||||+++|.++ ++..|...-.+. ++-... ....+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6789999999 9999999999999999999984 454443322211 110000 0013457999999863
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-06 Score=97.90 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCC-CCCHHHHHHHHHHHHHhcCC-cEEEE-eccCchhHhh
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATA-NVDPKTDLLIQRTIRKKFAD-CTVLT-IAHRLHTIMD 538 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~te~~I~~~l~~~~~~-~TvI~-IaHrlsti~~ 538 (597)
-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+.+.+....++ +++++ .||....+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 468999999999999999999999999997 89988777777777666654 45555 4888776653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.5e-06 Score=86.25 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.. ..+. +.|++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEe--------------
Confidence 4555544689999999999999999999988876432 2222 33322
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 506 (597)
-+.+.+++..-+-.+ ..|.+..--..| .||++++||++.|...+.+++++|.|+|+..+|
T Consensus 82 ---lEms~~ql~~Rlls~--------~~~v~~~~l~~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 82 ---LEMSAEQLALRALSD--------LTSINMHDLESG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---SSSCHHHHHHHHHHH--------HHCCCHHHHHHT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---CCCCHHHHHHHHHHH--------hhCCCHHHHhcC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 123444443211110 011111100112 689999999999999999999999998865544
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=88.29 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE-EEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI-KIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I-~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
-+++|+.+.|.||+|||||||+..+++.. +..|.+ +||+.... +. .+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhh
Confidence 38999999999999999999999999865 355655 67765432 22 24566777766543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=85.59 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE 405 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~ 405 (597)
++..++++|++||||||++..|++.+ +..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999876 46788888776653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=83.52 Aligned_cols=181 Identities=12% Similarity=0.081 Sum_probs=105.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH-HHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS-KLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~-~lr~~I~~ 418 (597)
+..++++..|+... ++++|+ +|+.++++|++||||||++..|++++. ..|+|.+.+.|...-... .++..
T Consensus 77 ~v~~~L~~~~~~~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 77 TVYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34556666664322 577887 899999999999999999999999874 678999988887643221 12110
Q ss_pred EeCCCCCCCccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhc--CCCchhhhCCCCCCC---hhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFSGTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEG--AGLNMTVYEGGTNFS---VGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l--~GldT~vge~G~~LS---GGQrQRIaIARAll 490 (597)
.=..|+... ...+..++. .+.+... ++||..+-+-+-.++ ....+..+++|++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 012233321 122333331 1222222 678877655444443 24567778888886
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch---------hHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH---------TIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls---------ti~~-~D~Iivl~~G~Ive 552 (597)
-++-+|++| |+++.|.... .+.+.+. -+.+-++++|=-. .... .-.|..+-.|+-++
T Consensus 211 pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~ 277 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPE 277 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred CceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChh
Confidence 666778888 5556555432 2334432 2457777775211 1111 24566777775444
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-06 Score=83.62 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEccee
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~d 403 (597)
...|+|+|++||||||+.++|.+. |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccH
Confidence 457999999999999999999985 766776544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-06 Score=77.77 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=33.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~ 405 (597)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCcccc
Confidence 568999999999999999999999865 88999987765
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-05 Score=81.58 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=33.0
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc----CCcEEEEeccCchh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF----ADCTVLTIAHRLHT 535 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~----~~~TvI~IaHrlst 535 (597)
.+|.+++|||+... |...-..+.+.+.+.. .+.++|+++|+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999987 8777777766665433 36788999998853
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.89 E-value=5.5e-06 Score=79.10 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=39.0
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~ 409 (597)
..++|+.++|+|+|||||||+++.|.++++ ..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999874 57888887777655443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-06 Score=80.11 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=34.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCc--eEEEcceeCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDIDTE 405 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G--~I~idg~di~ 405 (597)
++|+.++|+|++||||||++++|.+.+++.| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 4799999999999999999999999765567 7777876554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.3e-06 Score=85.68 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=25.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.||+|||||||+.-++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999998876
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.82 E-value=7e-06 Score=83.72 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEE-cceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHH
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI-DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV 444 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~i-dg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~ 444 (597)
++.+|||||++|+|||||++.|+|... .+ .+.+ ....++..++++++..-+. +.| ++|.. . +
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~-----~i~s~~~-----~tTr~~~~gi~~~~~~~i~--~iD--TpG~~--~-~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI-----SITSRKA-----QTTRHRIVGIHTEGAYQAI--YVD--TPGLH--M-E 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE-----EECCCCS-----SCCSSCEEEEEEETTEEEE--EES--SSSCC--H-H
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc-----cccCCCC-----CcceeeEEEEEEECCeeEE--EEE--CcCCC--c-c
Confidence 445899999999999999999998531 11 1111 1112345677877643111 111 23321 0 1
Q ss_pred HHHHHHHhcHHHHHHh----cCCCchhh--hCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecCCCCCCHHH-HHHHHH
Q psy1502 445 LWTALQEVELKDMIME----GAGLNMTV--YEGGTNFSVGQRQLICLARAIV--RNNVILVLDEATANVDPKT-DLLIQR 515 (597)
Q Consensus 445 i~~a~~~a~l~~fI~~----l~GldT~v--ge~G~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaLD~~t-e~~I~~ 515 (597)
-...+. .++... +...|-.+ -+... +|+|++ .+++++. ..|.|+++ +-+|... ...+.+
T Consensus 70 ~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 70 EKRAIN----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp HHHHHH----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred chhhHH----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 111111 122111 12223321 22223 999886 5677776 67888888 5677665 444555
Q ss_pred HHHHhcC--C--cEEEEeccCchhHhh-cCEE
Q psy1502 516 TIRKKFA--D--CTVLTIAHRLHTIMD-SDKV 542 (597)
Q Consensus 516 ~l~~~~~--~--~TvI~IaHrlsti~~-~D~I 542 (597)
.+.++.+ + .++.+.||.-..+.. +|.|
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 5554432 2 366667777665543 3443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.7e-05 Score=75.75 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH----------HHHHHHHHHHhcC-----CcEEEEeccCchh-----H
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKT----------DLLIQRTIRKKFA-----DCTVLTIAHRLHT-----I 536 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~t----------e~~I~~~l~~~~~-----~~TvI~IaHrlst-----i 536 (597)
+++++|-.+++|...+|.+|++||+.+-++... ...+...++.... +..+|..|++... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 577788888888888999999999988765322 2234444444321 2456778887543 2
Q ss_pred hhcCEEEEEe
Q psy1502 537 MDSDKVLVMD 546 (597)
Q Consensus 537 ~~~D~Iivl~ 546 (597)
+.+|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 4678776654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.78 E-value=5.2e-06 Score=86.01 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=36.7
Q ss_pred CCccceeeeEEEcCCcE--EEEEcCCCCCHHHHHHHHhccc-cCCc
Q psy1502 353 GPRVIKNLNITIHPKEK--IGIVGRTGAGKSSLIAAIFRLA-EVEG 395 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~~l~-~~~G 395 (597)
.+.+++.++..++.|+. +.+.||+|+||||+++.+++.. +..|
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34588899999999988 9999999999999999999854 4444
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.2e-06 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.3
Q ss_pred CccceeeeEEEcCCc------EEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 354 PRVIKNLNITIHPKE------KIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 354 ~~vL~~isl~I~~G~------~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.+.|++++..+.+++ .+||+||||||||||+++|.++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457888888888877 899999999999999999999863
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.4e-05 Score=78.28 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc---cc-cCCceE--------EEcceeCCCCC-hHHHhcCcEEEe------CCCCCCC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR---LA-EVEGVI--------KIDDIDTEDVP-LSKLRSNISIIP------QDPVLFS 427 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~---l~-~~~G~I--------~idg~di~~~~-~~~lr~~I~~V~------Q~~~LF~ 427 (597)
+-.++|+|||||||||+++.|.+ +. .+.|.+ .-.|.+..+.. ...+..++.++. |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 45899999999999999999984 32 245666 34677766543 455667777776 5566666
Q ss_pred ccHHhhcc
Q psy1502 428 GTLRKNLD 435 (597)
Q Consensus 428 gTI~eNI~ 435 (597)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 67766664
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=7.9e-06 Score=77.58 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=38.6
Q ss_pred EEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc----c-c----CCceEEEcceeC
Q psy1502 347 NVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----A-E----VEGVIKIDDIDT 404 (597)
Q Consensus 347 sf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l----~-~----~~G~I~idg~di 404 (597)
+|+|++-.++++++|+..+++ +|+++|++|+|||||++.+.+- | | ..+.+.++|.++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 567876667999999988777 6899999999999999999862 2 1 236666666443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.69 E-value=7.3e-05 Score=76.59 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=66.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
-+.|+++.--+++|+.+.|.|++|+|||||+.-++.-....| ..+.|++=
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND------------------DVVNLHSL------------ 104 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT------------------CEEEEEES------------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------------------CeEEEEEC------------
Confidence 345666665689999999999999999999987764221111 12333331
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCC-CCChhHHHHHHHHHHHccCCCEEEeecCCCC
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATAN 504 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~-~LSGGQrQRIaIARAll~~p~ILILDEaTSa 504 (597)
+.+.+++.+-+... ..|++..--..|. .||++++||++.|...+.++++++.|+|+..
T Consensus 105 -----E~s~~~l~~R~~~~--------~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVT--------AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHH--------HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHH--------HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 23444443322111 0122211001111 2889999999999988888999999988644
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.7e-05 Score=80.02 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..+.|.||+|+|||||++.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999854
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=8.4e-05 Score=79.82 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=34.2
Q ss_pred cc-CCCEEEeecCCCCCCH-HHHHHHHHHHHHhc-CCcEEEEeccCc
Q psy1502 490 VR-NNVILVLDEATANVDP-KTDLLIQRTIRKKF-ADCTVLTIAHRL 533 (597)
Q Consensus 490 l~-~p~ILILDEaTSaLD~-~te~~I~~~l~~~~-~~~TvI~IaHrl 533 (597)
++ +|++|++||+..-.+. .+...+...++.+. .++++|+.||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34 8999999999887764 56677777777654 467889999984
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00034 Score=68.30 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|+|||++|+|||||++.|+|-.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999854
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.54 E-value=8.7e-06 Score=77.84 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=41.8
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccC--CceE----------EEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVI----------KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~--~G~I----------~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
...+|..++|+||||||||||++.|...++. .+.+ .+||.+..-++.+.+... +.|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK---LKEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH---HHTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH---HHcCCCEEeHHh
Confidence 3568999999999999999999999875431 1111 235555555566555543 234444444433
Q ss_pred Hhh
Q psy1502 431 RKN 433 (597)
Q Consensus 431 ~eN 433 (597)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.1e-05 Score=70.62 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
.|+.++|+|++||||||++++|.+.+. .+.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEec
Confidence 478899999999999999999998652 345554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=4e-05 Score=82.35 Aligned_cols=60 Identities=32% Similarity=0.391 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc-------------cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA-------------EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~-------------~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
-++||||++|+|||||++.|+|.. +.+|.+.++|.++.-++...+++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 479999999999999999999852 236899999998766666666666677777666664
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.48 E-value=1.7e-05 Score=87.49 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
++++...|. ...+++++++++ +|+.++|+||+|+|||||++.|.+.. ++.|.|.++|.....-.....++.+|+++|
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPG 163 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCch
Confidence 455555552 234678888888 89999999999999999999999976 467888887754322112223455666665
Q ss_pred C
Q psy1502 422 D 422 (597)
Q Consensus 422 ~ 422 (597)
.
T Consensus 164 ~ 164 (543)
T 3m6a_A 164 R 164 (543)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.45 E-value=2.6e-05 Score=80.86 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=44.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE 405 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~ 405 (597)
..+++++++.+++|..++|+|++|+|||||++.|++.+ +..|.+.+-+.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 35788999999999999999999999999999999976 46788877666654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00015 Score=74.34 Aligned_cols=26 Identities=35% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++..+.|.||+|+|||||++.+.+..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999854
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=3.4e-05 Score=74.03 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=36.4
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCc--eEEEcceeC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG--VIKIDDIDT 404 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G--~I~idg~di 404 (597)
+.+++|..++|+|++||||||+++.|.+.++ ..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4467899999999999999999999998775 678 888886443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.39 E-value=9.8e-05 Score=72.95 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=28.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEccee
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~d 403 (597)
.++++++..++| +.|+||+|+|||||++.|.+.... --+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~-~~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC-CEEEEeHHH
Confidence 455566656555 999999999999999999986421 124555443
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00039 Score=67.76 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=69.9
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhccc--CCC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDP--FEK 439 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~--~~~ 439 (597)
+.+|+.+.++|||||||||++.+++.- ....|. ...+.++.|.|.... .++.+|+.. +..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 356899999999999999988776532 111121 134566666665332 344555431 100
Q ss_pred CChHHHHHHHHHhcHHHHHHhcCCCchh----hhCCCCC---CChhHHHHHHHHHHHccCCCEEEeecCCC-CCCHHHHH
Q psy1502 440 YPDYVLWTALQEVELKDMIMEGAGLNMT----VYEGGTN---FSVGQRQLICLARAIVRNNVILVLDEATA-NVDPKTDL 511 (597)
Q Consensus 440 ~~~e~i~~a~~~a~l~~fI~~l~GldT~----vge~G~~---LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~te~ 511 (597)
.. ...|+... ....+.+ -+.|.-.+. .+..+++-+++|+||+-. ++|.....
T Consensus 137 ~~------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 PG------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp TT------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred cC------------------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 00 00111111 1101111 134655454 344689999999999976 57777664
Q ss_pred HHHHHHHHhcCCcEEEE
Q psy1502 512 LIQRTIRKKFADCTVLT 528 (597)
Q Consensus 512 ~I~~~l~~~~~~~TvI~ 528 (597)
...+.+.+..++..+|+
T Consensus 197 ~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhhCCCCeEEE
Confidence 45555555555543333
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.35 E-value=6.4e-05 Score=73.37 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=28.7
Q ss_pred ceeeeEEEc---CCcEEEEEcCCCCCHHHHHHHHhccccCCceEE
Q psy1502 357 IKNLNITIH---PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIK 398 (597)
Q Consensus 357 L~~isl~I~---~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~ 398 (597)
|.++||.+. +|..++|.|++||||||+++.|...+...+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 444455544 899999999999999999999998664344443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00026 Score=71.69 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc-cCCce
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA-EVEGV 396 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~ 396 (597)
...+.|+||+|+||||+++.|.+.. ...|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 4579999999999999999999865 34443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=9e-05 Score=77.08 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=34.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED 406 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~ 406 (597)
+++..|+|+|++|||||||++.|.+.. +.+|.|.|.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 457899999999999999999999976 567888888776653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.29 E-value=7.8e-05 Score=76.94 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.|+++|| ...++++....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778888888898888887666667778877654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=68.31 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=20.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|+..++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999988776 889999999999999999986
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00061 Score=68.12 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.0
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++++..+.|.||+|+|||||++.+.+-
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 467788999999999999999999874
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=66.55 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++|.+++|||++|+|||||++.|.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999975
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=67.61 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+.|.||+|+|||||++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=69.36 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++..+.|+||+|+|||||++.+.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00013 Score=68.40 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=26.4
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00075 Score=68.42 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.7
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+.++++..+.|.||+|+|||||++.|.+..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457889999999999999999999998754
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=68.50 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCCccceeeeEE---EcCCcEEEEEcCCCCCHHHHHHHHhccc-cC-CceEEEcc
Q psy1502 352 SGPRVIKNLNIT---IHPKEKIGIVGRTGAGKSSLIAAIFRLA-EV-EGVIKIDD 401 (597)
Q Consensus 352 ~~~~vL~~isl~---I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~-~G~I~idg 401 (597)
.+-+-|+.+ |. +++|+.+.|.|++|+|||||+.-++.-. .. ...++||.
T Consensus 46 TG~~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 46 TGSLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CSCHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCHHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 333445554 33 8899999999999999999998777533 22 23444554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00044 Score=74.50 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHccCCCEEEeec-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDE-ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
+.|.+-...++..+++++++|+.. ++..+.... ..+.+.+++ .++.+|+|.+......
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence 458888889999999999887654 444455544 456566654 4788999998887653
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0034 Score=66.89 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc-eEEE
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG-VIKI 399 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G-~I~i 399 (597)
++..++++|++|+||||++.-|+..+...| ++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 467999999999999999999998664333 4443
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00027 Score=64.03 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=25.0
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-ccc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLA 391 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~ 391 (597)
+..+++++| ..+|+||+|||||||++.|. .++
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHc
Confidence 344555554 89999999999999999997 354
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00074 Score=64.69 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=34.9
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
.+|.++++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999876 78888888888887655567788888886644
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0002 Score=67.99 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDT 404 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di 404 (597)
...|+|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence 5689999999999999999998754 5556665443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=57.87 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=29.0
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 532 (597)
+..+|++||.- .|+++....+.+.|.....+..+|..|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 44689999985 67888888888888555445566777765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00018 Score=72.97 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=46.4
Q ss_pred EEEeeEEEeCCCCcccee-eeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC
Q psy1502 342 EFQNTNVRYLSGPRVIKN-LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED 406 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~-isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~ 406 (597)
..+++...|+... ++ ++++.+ |+.++++|++|+||||++..|++.+. ..|++.+.+.|...
T Consensus 76 ~~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 76 VYDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3455555553321 45 777776 99999999999999999999999774 57899988887654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00023 Score=72.89 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999999987764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00018 Score=71.06 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=34.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~ 405 (597)
..+++..+.|+|++||||||+++.|.+.++ .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHH
Confidence 466788999999999999999999998653 356778876554
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00043 Score=64.70 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceE-EEcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVI-KIDD 401 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I-~idg 401 (597)
..++|..+.|+|++||||||+++.|.+... ..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 346799999999999999999999998664 45555 4554
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0001 Score=76.98 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=35.5
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.|.|+|++..|. ++.++++++|+| +|||++|+|||||++.|.+..
T Consensus 15 ~~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 15 PGYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ------CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45689999998885 356889999976 999999999999999998753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0062 Score=61.34 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=36.7
Q ss_pred CCCEEEeecCCCC--------CCHHHHHHHHHHHHHhcCCcEEEEeccC----------chhHhhcCEEEEEeC
Q psy1502 492 NNVILVLDEATAN--------VDPKTDLLIQRTIRKKFADCTVLTIAHR----------LHTIMDSDKVLVMDS 547 (597)
Q Consensus 492 ~p~ILILDEaTSa--------LD~~te~~I~~~l~~~~~~~TvI~IaHr----------lsti~~~D~Iivl~~ 547 (597)
++.+|++||+-.- .+.+....+.+.+.+...+..+|+++++ .....++|.++.+..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECC
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCC
Confidence 5679999998643 3666666777777765555677777754 233346777776643
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00055 Score=63.73 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc-C---CceEEEccee
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAE-V---EGVIKIDDID 403 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~-~---~G~I~idg~d 403 (597)
-..++|+|+||||||||++.|.+... . -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 46799999999999999999998542 2 3778877655
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.005 Score=58.00 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=31.8
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
.++.++++||+- .++.+....+.+.+.+...+..+|+++++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 368899999974 46777777787888776556667777776543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0093 Score=60.97 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=24.0
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++..-+.|.||+|+|||||++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566789999999999999999998743
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0061 Score=65.28 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.5
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466655458999999999999999999998887643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00057 Score=71.63 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
+.+|+++|..+|+++++|||| |+++-. .+++....+.+++.++|..+....|||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 569999999999999999999 777633 34444445789999999887666677764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00067 Score=64.22 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6999999999999999999983
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0025 Score=66.06 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcce
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI 402 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~ 402 (597)
.+|..+.|.||+|+||||+++.+.+... ...-+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 4567899999999999999999997543 2234444443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0081 Score=58.79 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..-+.|.||+|+||||+++.+.+-
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44566899999999999999999874
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=61.36 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|..|.|+|+|||||||+.+.|..-.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998743
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=61.61 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=24.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.||+|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 379999999999999999999977764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0008 Score=62.55 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+|..++|+|++||||||+.+.|..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00087 Score=69.99 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+++|||++|+|||||++.|++..+ ++.+++.. |+..|+... .++++++..+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~----------~v~~~p~~------------------Ti~pn~g~~-~v~~~~l~~~ 53 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANA----------LAANYPFA------------------TIDKNVGVV-PLEDERLYAL 53 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHT----------TCSSCCGG------------------GGSTTEEEE-ECCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC----------cccCCCCc------------------eeccceeeE-ecChHHHHHH
Confidence 589999999999999999998642 12222221 666666543 4567788888
Q ss_pred HHHhcHHH
Q psy1502 449 LQEVELKD 456 (597)
Q Consensus 449 ~~~a~l~~ 456 (597)
++.++..+
T Consensus 54 ~~~~~~~~ 61 (368)
T 2dby_A 54 QRTFAKGE 61 (368)
T ss_dssp HHHHCBTT
T ss_pred HHHhcccc
Confidence 87776544
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0031 Score=64.27 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
--+++|..+.|.||+|+|||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0046 Score=59.83 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC-----------chhHhhcCEEEEEe
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR-----------LHTIMDSDKVLVMD 546 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr-----------lsti~~~D~Iivl~ 546 (597)
+++++++||+-- |+.+.-. ....|.+. +.++|++-|+ ...+..||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAEN--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHHT--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHhC--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 689999999964 6654222 33444443 7899999993 33345799998863
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=60.85 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+++++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999873
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=60.63 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0089 Score=62.00 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++...+.|.||+|+|||||++.+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=59.99 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0004 Score=71.75 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=32.9
Q ss_pred ccceeeeEEEcCCcE--EEEEcCCCCCHHHHHHHHhcc
Q psy1502 355 RVIKNLNITIHPKEK--IGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 355 ~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+++++++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 478889999999999 999999999999999999874
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0004 Score=66.19 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCC
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVE 394 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~ 394 (597)
.|+|+|++||||||+++.|.+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999876533
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=62.37 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=23.4
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+.++++.+ ...+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455554 489999999999999999986
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0013 Score=61.06 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..|.|+|++||||||+.+.|..-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=60.89 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++|+|++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999863
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=68.59 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+..+.|.||+|+|||||++.+.+-.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=60.74 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..+.|+|++||||||+++.|...+...|
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999987544334
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0059 Score=65.37 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=27.6
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4554443589999999999999999999877765
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=61.04 Aligned_cols=27 Identities=19% Similarity=0.152 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+|..|+|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998755
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=59.30 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAI 387 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL 387 (597)
.|+|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=65.72 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3677877777 789999999999999999998885
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=67.91 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=43.8
Q ss_pred cCCCEEEeecCCCCCC---HHHHHHHHHHHHHhcC-CcEEEEeccCchhH-------------hhcCEEEEEeCC
Q psy1502 491 RNNVILVLDEATANVD---PKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI-------------MDSDKVLVMDSG 548 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD---~~te~~I~~~l~~~~~-~~TvI~IaHrlsti-------------~~~D~Iivl~~G 548 (597)
..|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++.+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 5566777777776655 77899999999765 356777777654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0017 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++..|.|+|++||||||+++.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.013 Score=62.67 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..-+.|.||+|+|||||++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999998743
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=62.99 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.5
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-++|..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=68.24 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=31.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcc-----------c-cCCceEEEcce
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRL-----------A-EVEGVIKIDDI 402 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l-----------~-~~~G~I~idg~ 402 (597)
.+..|.+++|||++|+|||||++.|.+. . |..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999986 1 23577776653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=64.64 Aligned_cols=36 Identities=36% Similarity=0.532 Sum_probs=28.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
.+|..+.|+|||||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 3467899999999999999999986433 36667765
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=61.32 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..|+|.|++||||||+++.|..-+...|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 467899999999999999999987654444
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0017 Score=61.12 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=40.4
Q ss_pred EEEEcCCCCCHHHHHHHHhccc-------------c-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRLA-------------E-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l~-------------~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
|.|+||||||||||++-|+.-+ + -.|++ ||+|..-++.+...+.+ .++-+|-.+.+..|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~ 76 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc
Confidence 7899999999999999886321 1 14664 88888878877776653 34555555554444
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=60.82 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+++.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0021 Score=61.60 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
++-.|+|+|++||||||+++.|.++ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc----CCEEEEc
Confidence 3568999999999999999999873 5455553
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=59.84 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++..|+|+|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=60.49 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++|..|+|.|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998743
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00016 Score=75.64 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHHc-cCCCEEEeec---CC------CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCE
Q psy1502 474 NFSVGQRQLICLARAIV-RNNVILVLDE---AT------ANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDK 541 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll-~~p~ILILDE---aT------SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~ 541 (597)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.|.++.+ +.|+|+++|--..-+-||+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45677788999999885 5999999999 54 68999999999999977655 7899999986433344666
Q ss_pred EEEEe
Q psy1502 542 VLVMD 546 (597)
Q Consensus 542 Iivl~ 546 (597)
+.+++
T Consensus 338 i~~i~ 342 (365)
T 1lw7_A 338 KAVIE 342 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=59.25 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.++..|.|+|++||||||+++.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999985
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0077 Score=60.69 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=21.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++...+.+.||+|+|||+|++.|++-
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456888999999999999999874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=60.22 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=24.4
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++|..|+|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0023 Score=59.92 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.2
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0026 Score=58.62 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++|+|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0023 Score=59.15 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC----ceEEEcce
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEVE----GVIKIDDI 402 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~~----G~I~idg~ 402 (597)
..++|+|+||||||||+..|.+..... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 479999999999999999998754322 55554443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0028 Score=62.54 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++|+||||||||||.+.|++-
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.035 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.2
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=++...+.++|++||||||+++.|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999875
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0031 Score=57.91 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCceEEEc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~id 400 (597)
..|.|+|++||||||+++.|... ..|...++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK--NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh--cCCcEEec
Confidence 46899999999999999999862 12444454
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0021 Score=62.17 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=26.2
Q ss_pred HccCCCEEEeecCCCC-CC-HHHHHHHHHHHHHhcCCcEEEEecc
Q psy1502 489 IVRNNVILVLDEATAN-VD-PKTDLLIQRTIRKKFADCTVLTIAH 531 (597)
Q Consensus 489 ll~~p~ILILDEaTSa-LD-~~te~~I~~~l~~~~~~~TvI~IaH 531 (597)
+.++|+++|+||+-.. .+ ..++...++....+..+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3368999999997642 23 2334444444444445667777777
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.021 Score=59.15 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..-+.|.||+|+|||||++.+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999874
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0037 Score=58.14 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..|+|+|++||||||+.+.|..-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.016 Score=51.49 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=27.6
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccC
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHR 532 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHr 532 (597)
+..+|++||.- .++.+....+.+.+++.. .+..+|..|++
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 35689999975 567887778888887653 23456666654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0038 Score=58.00 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.|.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0031 Score=58.28 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=17.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++..|.|+|++||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45788999999999999999999753
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.003 Score=58.77 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCce
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGV 396 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~ 396 (597)
.|+|.|++||||||+.+.|...++..|-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY 29 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 5899999999999999999875543343
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=95.82 E-value=1.6 Score=47.92 Aligned_cols=101 Identities=8% Similarity=-0.063 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 20 EEYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYI----GIYFSLIVGLFVAGISRSTAFYSACMRCS 95 (597)
Q Consensus 20 ~~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (597)
..||...++..+.+++....+.+...++...++.-...........+ ..+++++++..++..+..+...+...++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (578)
T 4a82_A 10 KPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTS 89 (578)
T ss_dssp GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554445445545555555544555555555432211111112223 22222333333444444555566677777
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 96 KGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 96 ~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
.++..++-.++.+ ...+.+.+..-+
T Consensus 90 ~~~~~~lr~~l~~----~ll~~~~~~~~~ 114 (578)
T 4a82_A 90 NKILYDIRKKLYN----HLQALSARFYAN 114 (578)
T ss_dssp HHHHHHHHHHHHH----HHHHSCHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHCCCHHHHcC
Confidence 7777777777633 334455555443
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++++|++|+|||||++.+.+-
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999999874
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.018 Score=65.85 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.++||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999854
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.007 Score=56.12 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++-+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999976653
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0053 Score=58.81 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++|..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0048 Score=58.78 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=55.47 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0051 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++..|.|+|++||||||+++.|..-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0057 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..|+|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0051 Score=58.99 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..|.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0058 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
....|+|+|++||||||+.+.|..-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=61.02 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+..+.|.||+|+|||||++.+.+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0035 Score=63.20 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++-.|||.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.005 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..|+|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0059 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+.++|.|+.||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999975
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0058 Score=55.40 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0059 Score=55.05 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.06 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..+.|.||+|+|||||++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0057 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-.|+|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.006 Score=55.03 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999763
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0056 Score=54.78 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0056 Score=54.65 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0057 Score=58.28 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|+|++||||||+++.|..-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.005 Score=60.91 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..|.|+|++||||||+++.|....
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998743
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0055 Score=57.73 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++|.|++||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0054 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..|+|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0056 Score=60.85 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|||||||++.|.|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999985
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0061 Score=55.43 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0057 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+.=+++++|++|+|||||++.+.+-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3448999999999999999999874
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0061 Score=54.59 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0059 Score=60.83 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998763
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0061 Score=54.92 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0062 Score=54.36 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999863
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0068 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+..|+|+|++||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0063 Score=54.60 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.03 Score=57.75 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.++++||+- .++.+....+.+.+++...+..+|+++++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999975 46778778888888775555667777876653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0066 Score=56.36 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..-+++++|++|+|||||++.|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999986
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.04 Score=59.69 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
+...|+|||++||||||++.-|+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999986553
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0066 Score=54.68 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0082 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.-+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999986
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0066 Score=54.74 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0068 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0069 Score=55.14 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0067 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.007 Score=55.94 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+++++|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999874
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0068 Score=55.24 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.007 Score=55.07 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.007 Score=59.44 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-.|+|.|++||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0075 Score=58.98 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++-.|+|.|++||||||+++.|..-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.01 Score=56.10 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=26.4
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+...-+. ..|..+.|+||||||||||+.-|..
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHH
Confidence 45555444 4688999999999999999998874
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0077 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999863
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0076 Score=54.16 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.008 Score=60.23 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0082 Score=55.29 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999873
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0079 Score=55.28 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.|.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0085 Score=61.45 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..+.|+||||||||||...|+.-+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356789999999999999999998743
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.037 Score=55.63 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.++++||+-. ++.+....+.+.+.+...+..+|+++++...
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 488999999743 5556666677777776556677777777543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0081 Score=55.77 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0084 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+|+++|++|+|||||++.|.|-
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999985
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.01 Score=61.87 Aligned_cols=30 Identities=37% Similarity=0.653 Sum_probs=25.2
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
++..+++.+ ....|+|+||||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 556666666 589999999999999999886
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0083 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=+|+++|++|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0084 Score=55.21 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0087 Score=53.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.012 Score=61.14 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
|-+++|||.+|+|||||++.|.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 56899999999999999999997
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.23 E-value=4.6 Score=44.31 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 74 VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
++..++..+..+...+...++..++..++-.++.+ ...+.+.+..-+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~ 118 (582)
T 3b5x_A 72 LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFN----HFMHMPVRFFDQ 118 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHCC
Confidence 33344445555555566667777777777666643 334455554443
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0088 Score=54.34 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.051 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+...+.|.||+|+|||||++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0097 Score=54.13 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0092 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999975
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.008 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999974
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.009 Score=56.00 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0094 Score=54.34 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=95.16 E-value=4.8 Score=44.16 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHH
Q psy1502 74 VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129 (597)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D 129 (597)
++..++..+..+...+...++..++..++-.++.+ ...+.+.+..-++=+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~l~~~~~~~~~~~~~g~ 123 (582)
T 3b60_A 72 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG----HMMGMPVAFFDKQSTGT 123 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTCCSTHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHCCCChhH
Confidence 33444555555566666777777777777777643 34455665555443333
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0096 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+|+|+|++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|-.|.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0099 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|+++|++|+|||||++.+.+-+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.|.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=60.10 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=58.53 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|.+|||||||++.|.|-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999985
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.065 Score=65.81 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.8
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++|+.+.|.||+|+|||||+.-++.-.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 8999999999999999999999887643
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=54.10 Aligned_cols=21 Identities=43% Similarity=0.729 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0099 Score=57.04 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
.+|..|.|.|++||||||+++.|...+...|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999987554444
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.02 E-value=5.4 Score=43.95 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D 129 (597)
.+..+++++++..++..+..+...+...++..++..++-..+. ....+.+.+..-++=+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~----~~ll~~~~~~~~~~~~G~ 135 (598)
T 3qf4_B 75 LLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELF----EKLQRVPVGFFDRTPHGD 135 (598)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHSCTHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCHHHHcCCCHHH
Confidence 3444555555555666666666667777777777777777763 334455665555443333
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.012 Score=53.97 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 679999999999999999985
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.012 Score=56.09 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=54.84 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=55.05 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.013 Score=53.88 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.=+|+++|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4556899999999999999999986
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=54.72 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999986
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=54.96 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=55.13 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=56.25 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+|+++|++|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999986
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..|+|+||||||||||...|..-+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998643
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 34789999999999999999986
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=54.45 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=59.54 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999974
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=54.64 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=54.28 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=59.30 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+..+.|+||||||||||+.-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998643
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0072 Score=57.53 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.-+|+++|++|+|||||++.|++-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+++++|++|+|||||++.|.+-
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999863
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.059 Score=54.23 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
++.++++||+- .++.+....+.+.+++...+..+|+++.+..
T Consensus 110 ~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 68899999974 4567777778888877555556666666554
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.035 Score=56.28 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCCEEEeecCCCCCC-HHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVD-PKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD-~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+++++++||+-. +. .+....+.+.+++...+..+|+++++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999854 34 566667777777766667888888886643
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.011 Score=57.66 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
+|..|.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987553
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=+|+++|++|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=53.47 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 789999999999999999983
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.014 Score=58.26 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|||||||++.|.|-
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.013 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999999986
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=54.56 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.02 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.9
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+---.|.-+.|.|+||+|||||+..|.
T Consensus 11 ~v~v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 11 FLVIDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 334568899999999999999998775
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=55.07 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=54.02 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999875
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997643
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.013 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+..++|+|++||||||+.+.|...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=53.54 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.-+|+++|++|+|||||++.+.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999986
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.-+|+++|++|+|||||++.+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 34799999999999999999986
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999984
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..|.|+|++||||||+++.|..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.013 Score=56.29 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..|.+.|++||||||+++.|.......|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999987554334
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=53.88 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999999986
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=57.26 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999973
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999985
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=57.44 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.|++
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999987
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=57.13 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.|.|-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999974
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.021 Score=54.90 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
++|..|.+-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999987554
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=53.55 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999985
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 345789999999999999999985
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=53.43 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=58.57 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|+|||++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=54.78 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+|..|.|.|++||||||+++.|...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.019 Score=52.52 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+..+.|+||+|+|||||++.+....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446779999999999999999998743
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.017 Score=57.85 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=+|+|||++|+|||||++.|.|-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 37999999999999999999974
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-.++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988863
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.019 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998887
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.=+|+++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=54.31 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.02 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999999985
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.014 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999885
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=53.30 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988874
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.29 Score=51.98 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
++...++++|++|+||||++.-|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999987654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=53.97 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999986
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.019 Score=58.59 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+.|+||||||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998643
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.013 Score=53.69 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.-+|+++|++|+|||||++.+.+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999885
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.021 Score=57.76 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
...+.|+||||||||||+.-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998643
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.018 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999964
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.023 Score=54.88 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
++|..|.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987543
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.015 Score=64.73 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc--eEEEcceeC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDIDT 404 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G--~I~idg~di 404 (597)
+|..|.|+|.+||||||+++.|.......| .+.+||..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 467899999999999999999987543333 556665443
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.29 E-value=0.016 Score=57.22 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++..|+|.|+.||||||+++.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3577899999999999999999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.022 Score=55.32 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|..|+|.|..||||||+++.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998644
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.022 Score=54.37 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|+|||||++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999885
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.012 Score=55.73 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999885
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=57.03 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.087 Score=61.10 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
..+.|+||+|+|||++++.|.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998653
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.02 Score=61.17 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=29.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 567799999999999999999999998754
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.022 Score=54.73 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=24.6
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..++...|.|+||.||||+|.++.|..-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34667789999999999999999998654
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.011 Score=61.63 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=38.7
Q ss_pred cEEEEeeEEEeCCCCccce-----------eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 340 KIEFQNTNVRYLSGPRVIK-----------NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~-----------~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
...|++++--||..+.-++ |.=+.|-+|++.+|+|++|+|||||+.-|.+.
T Consensus 137 r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 137 RVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 3445666555654444455 55577899999999999999999999988875
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.024 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+|++|+|||||++-+++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998886
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.071 Score=57.39 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=55.8
Q ss_pred hhhhCCCCCCChhHHHHHH--HHHHHcc---------------CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy1502 466 MTVYEGGTNFSVGQRQLIC--LARAIVR---------------NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528 (597)
Q Consensus 466 T~vge~G~~LSGGQrQRIa--IARAll~---------------~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 528 (597)
+........+||||+|-.- ||-|++. .=.+++|||| |-+|.+.-...++-++++ +-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4455556789999999533 3333222 1147999999 999999999999999987 777777
Q ss_pred eccCchhHhhcCEEEEEe
Q psy1502 529 IAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 529 IaHrlsti~~~D~Iivl~ 546 (597)
+|=. .....+|.+|.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 3335689988763
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.025 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44799999999999999998874
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.026 Score=59.25 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
...++|+||||||||||+.-|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.027 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
-++++||.+|+|||||++.|.|-.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 589999999999999999999743
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.026 Score=52.89 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 689999999999999999875
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.024 Score=51.79 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+.+..+.|+||+|+|||||++.+....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446778999999999999999998743
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.83 E-value=9.4 Score=41.86 Aligned_cols=56 Identities=5% Similarity=-0.091 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
.+..+++++++..++..+..++..+...+...++..++-..+.+ ...+.+.+..-+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~ 116 (587)
T 3qf4_A 61 LVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFR----KVLSFSISNVNR 116 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHcc
Confidence 34444555555555566666666667777777777777776632 233445544433
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.022 Score=62.87 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=29.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCc---eEEEcce
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG---VIKIDDI 402 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G---~I~idg~ 402 (597)
.+|..|.|.|.+||||||+++.|...+...| .+.+|+-
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 3567899999999999999999987554334 4666643
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.028 Score=56.96 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
|++-+|+++|++|+|||||++.+.+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3566899999999999999999775
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.76 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=4.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.032 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4789999999999999999875
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.036 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+-++++||.+|+|||||+|.|.|-.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3479999999999999999999853
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.03 Score=58.33 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..+++||++|+|||||+|.|.+-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999985
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.034 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999875
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.031 Score=58.23 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..+++||++|+|||||+|.|.+-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 6789999999999999999999975
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.048 Score=50.83 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch-----------hHhhcCEEEEEeC
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH-----------TIMDSDKVLVMDS 547 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls-----------ti~~~D~Iivl~~ 547 (597)
+++++++||+-- +|++-...+.... + .+..+|+..++.. .+..||.|..|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~-~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLL-D--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHH-H--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHH-H--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 678999999864 6554333332222 2 2778888888544 4456999988754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.011 Score=58.23 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=24.9
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+.+..+..++| +.|.||+|+|||||++.+.+-
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 44444455555 889999999999999999873
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.045 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.4
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999986543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 597 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-63 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-60 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-58 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-57 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-56 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-52 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-24 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-12 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 0.001 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 207 bits (528), Expect = 2e-63
Identities = 73/217 (33%), Positives = 120/217 (55%), Gaps = 4/217 (1%)
Query: 339 GKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
G+I+ + + +Y ++K++N++I E + VG +G GKS+LI I R +V G
Sbjct: 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL-DPFEKYPDYVLWTALQEVELK 455
I ID + +D LR+ I ++ QD +LFS T+++N+ D + A +
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 134
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
D IM G + V E G S GQ+Q + +AR + N IL+LDEAT+ +D +++ +IQ
Sbjct: 135 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ D T L +AHRL TI +DK++V+++G V
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 231
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 200 bits (509), Expect = 1e-60
Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%)
Query: 329 EDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
E + I G +EF+N Y ++N+N+ I + + +VGR+G+GKS++ + I
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 61
Query: 388 FRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN--LDPFEKYPDYV 444
R ++ EG I +D D + L+ LR+ ++++ Q+ LF+ T+ N E+Y
Sbjct: 62 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 121
Query: 445 LWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
+ A + D I + GL+ + E G S GQRQ I +ARA++R++ IL+LDEAT+
Sbjct: 122 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 181
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+D +++ IQ + + + T L IAHRL TI +D+++V++ G+ V
Sbjct: 182 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 229
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 193 bits (493), Expect = 2e-58
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 4/215 (1%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ ++ + Y +++++++ P I G +G GKS++ + + R + G I I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKDM 457
D +++ L RS I + QD + +GT+R+NL Y D LW L +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 458 IMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ T V E G S GQRQ + +ARA +RN IL+LDEATA++D +++ ++Q+
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ T L IAHRL TI+D+DK+ ++ G
Sbjct: 182 LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 189 bits (482), Expect = 7e-57
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 8/225 (3%)
Query: 335 WPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE 392
+ G ++FQ+ + Y + P V++ L T+ P E +VG G+GKS++ A + L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 393 VEGV-IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL--DPFEKYPDYVLWTAL 449
G + +D L ++ + Q+P +F +L++N+ +K + A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 450 QEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+ I G + V E G+ S GQRQ + LARA++R +L+LD+AT+ +D
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 509 TDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ L +++ + + + +VL I L + +D +L ++ G
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIR 230
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 188 bits (479), Expect = 1e-56
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 4/215 (1%)
Query: 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGV-IK 398
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R E +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDM 457
ID D + LR + ++ QD VL + ++ N+ + A + D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+ +D +++ +I R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ K TV+ IAHRL T+ ++D+++VM+ G V
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 216
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 177 bits (451), Expect = 6e-52
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 329 EDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388
+ + + F + L G V+KN+N+ I E + I G TG+GK+SL+ I
Sbjct: 27 NGDRKHSSDENNVSFSHL---CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLIL 83
Query: 389 RLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWT 447
E EG+IK +S Q + GT+++N+ Y +Y +
Sbjct: 84 GELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKS 130
Query: 448 ALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
++ +L+ I + N + EGG S GQR I LARA+ ++ + +LD +D
Sbjct: 131 VVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190
Query: 507 PKT-DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
T + + + + K A+ T + + ++ + +DK+L++ G +
Sbjct: 191 VFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSY 236
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (287), Expect = 2e-29
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 12/223 (5%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
I+ +N Y G +KN+N+ I E + I+G +G+GKS+++ I L + EG
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 397 IKIDDIDTEDVPLSKL----RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQE 451
+ ID+I T D+ +L R I + Q L T +N++ + + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 452 VELKDMIMEGAGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
+ ++ A L S GQ+Q + +ARA+ N I++ D+ T +D KT
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 511 LLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
I + ++K + TV+ + H ++ ++++ + G
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 111 bits (280), Expect = 1e-28
Identities = 36/218 (16%), Positives = 82/218 (37%), Gaps = 23/218 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
++ Q+ + L+ + E + +VG GAGKS+L+A + + +G I+
Sbjct: 4 MQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 58
Query: 401 DIDTEDVPLSKLRSNISIIPQDP-VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
E +KL + + + Q F+ + L + EL + +
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVA 110
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV-------ILVLDEATANVDPKTDLL 512
L+ + S G+ Q + LA +++ +L+LDE ++D
Sbjct: 111 GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170
Query: 513 IQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ + + ++ +H L+ + + + ++ G
Sbjct: 171 LDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 208
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (269), Expect = 6e-27
Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 21/230 (9%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
K+ + + RY G V+K +++ + I I+G +G+GKS+ + I L + EG I
Sbjct: 2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 399 IDDIDTEDVP-------------LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
++ + V L LR+ ++++ Q L+S L+ + P VL
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH--MTVLENVMEAPIQVL 118
Query: 446 WTALQEVELK-DMIMEGAGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
+ + + + G++ + S GQ+Q + +ARA+ +L+ DE T+
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 504 NVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+DP+ + R +++ T++ + H + S V+ + G
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 105 bits (264), Expect = 2e-26
Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 25/224 (11%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+++ +N R+ + LN+TI E + ++G +G GK++ + I L E EG I
Sbjct: 6 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYP-------DYVLWTALQ 450
D D L NIS++ Q ++ T+ +N+ K D + A +
Sbjct: 65 FGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
+++++++ S GQRQ + +ARAIV +L++DE +N+D K
Sbjct: 123 LLQIEELLNRYPA----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 172
Query: 511 LLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ ++ I+K + T + + H M D++ VM+ G +
Sbjct: 173 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 216
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 3e-26
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 14/222 (6%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
I+ N + G + + N+++ + + G++G +GAGKS+LI + L EG
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQEV 452
+ +D + + L+K R I +I Q L S T+ N+ + + + V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
++ GL +N S GQ+Q + +ARA+ N +L+ DEAT+ +DP T
Sbjct: 122 T---ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 513 IQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
I ++ + T+L I H + + D V V+ +G +
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (256), Expect = 1e-25
Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 24/212 (11%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI 399
K+E ++ +V Y V++ + +TI + G G GK++L+ I +
Sbjct: 2 KLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---- 55
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPF-----EKYPDYVLWTALQEVE 453
+I VP++K++ I +P++ ++ ++ L K + AL+ VE
Sbjct: 56 GEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE 115
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ D+ + L S G + + LA ++ N I VLD+ +D + +
Sbjct: 116 VLDLKKKLGEL-----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
++I + + ++ I+ R + D +
Sbjct: 165 LKSILEILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (250), Expect = 2e-24
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 16/223 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ +N + + + ++I+++ + I+G G+GKS+LI I + EG +
Sbjct: 5 LRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 63
Query: 400 DDIDTEDVPLSKL-RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTAL-------- 449
++ D + ++L I Q P T+ +NL E P +L
Sbjct: 64 ENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK 123
Query: 450 --QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
+ VE I+E L+ S GQ +L+ + RA++ N ++V+DE A V P
Sbjct: 124 EEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
I + + K T L I HRL +++ D + VM +G
Sbjct: 184 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 226
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 99.7 bits (248), Expect = 3e-24
Identities = 44/216 (20%), Positives = 102/216 (47%), Gaps = 13/216 (6%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
G + ++ R ++K ++ I E G++G GAGK++ + I L + G++
Sbjct: 1 GAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
+ + + P ++R IS +P++ +N+ E + A E+++M
Sbjct: 60 TVFGKNVVEEP-HEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEEM 113
Query: 458 I---MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ E AGL + + + +S G + + +ARA++ N + +LDE T+ +D ++
Sbjct: 114 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 515 RTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ +++ T+L +H + + D++ ++ +G
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 209
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (239), Expect = 4e-23
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 15/218 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGV-IKI 399
++ QN + V K++N+ IH E + VG +G GKS+L+ I L + + I
Sbjct: 1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVE--LKD 456
+ D P + ++ Q L+ ++ +N+ K Q V +
Sbjct: 60 GEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ + L+ S GQRQ + + R +V + +LDE +N+D + ++
Sbjct: 118 LQLAHL-LDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 517 IRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
I + K T++ + H M +DK++V+D+G
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 210
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.5 bits (232), Expect = 4e-22
Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 13/221 (5%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGV-IK 398
+ + + ++ +++ + E + ++G +G GK++ + I L E I
Sbjct: 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 399 IDDID----TEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVE 453
I D + + + +I+++ Q L+ T+ N+ K Q V
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ E GL + S GQRQ + L RAIVR + ++DE +N+D K + +
Sbjct: 122 ---EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 514 QRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ ++K + T + + H M D++ VM+ GV
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 91.5 bits (227), Expect = 2e-21
Identities = 34/210 (16%), Positives = 83/210 (39%), Gaps = 3/210 (1%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
+E Q+ +V Y IK +++ + + + ++G GAGK++ ++AI L + I
Sbjct: 7 LEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
+ + + + + I + + +L+ +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK- 519
L + + G S G++Q++ + RA++ +L++DE + + P + I+K
Sbjct: 126 FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 520 KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
T+L + + + V+++G
Sbjct: 186 NQEGTTILLVEQNALGALKVAHYGYVLETG 215
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 90.9 bits (225), Expect = 2e-21
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 11/214 (5%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
IE ++ + ++ + NL++ + E I+G TGAGK+ + I + +I
Sbjct: 2 IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRIL 58
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
+ LS + +I+ + Q+ LF +++ + + +++ +
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLF-----PHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK- 519
+ + S G++Q + LARA+V N IL+LDE + +DP+T + +
Sbjct: 114 DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL 173
Query: 520 -KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
K TVL I H +D++ V+ G +
Sbjct: 174 HKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.4 bits (208), Expect = 6e-19
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 12/221 (5%)
Query: 340 KIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
+I +N + + G + N+NI I E+ GI+G +GAGK++ + I L G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 398 KIDDIDTEDVPLSKLRS---NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVE 453
DD + I ++ Q L+ T +N+ + VE
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ + ++ + S Q+Q + LARA+V++ +L+LDE +N+D +
Sbjct: 123 ---EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 514 QRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +++ T+L ++H I +D+V V+ G V
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.5 bits (193), Expect = 5e-17
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 11/198 (5%)
Query: 359 NLNITIH-PKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNI 416
LN+ ++ ++G TGAGKS + I + + G ++++ D PL R I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGI 72
Query: 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476
+PQD LF + + + E+ + + L+ S
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR----LS 128
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLH 534
G+RQ + LARA+V +L+LDE + VD KT ++ +R + D +L + H L
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 535 TIMD-SDKVLVMDSGVAV 551
+D+V VM +G V
Sbjct: 189 EAAMLADEVAVMLNGRIV 206
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 62.3 bits (150), Expect = 6e-12
Identities = 16/185 (8%), Positives = 37/185 (20%), Gaps = 28/185 (15%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427
KI I G G GK++L+ I +++ + I+ + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487
+
Sbjct: 62 KFFTSKKLVGSYGVN---------------------------VQYFEELAIPILERAYRE 94
Query: 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547
A ++++DE + V+ ++ +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 548 GVAVV 552
V +
Sbjct: 155 AVLIE 159
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 1e-09
Identities = 20/171 (11%), Positives = 49/171 (28%), Gaps = 9/171 (5%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG-VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428
+ + G G GK++LI + + G + + ++ ++ + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 429 TLRKNLDPFEKYPDYVLWTALQEVELKDMIM-------EGAGLNMTVYEGGTNFSVGQRQ 481
+ + L E + + G G + V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532
I R + ++L L+ + +K +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLALV-EEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 38.8 bits (88), Expect = 0.001
Identities = 45/294 (15%), Positives = 105/294 (35%), Gaps = 7/294 (2%)
Query: 32 TAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSAC 91
A + + S ++++ + LL + L++ + S
Sbjct: 28 NAASDTFMLSLLKPLLDDGFGKTDRSVLLW---MPLVVIGLMILRGITSYISSYCISWVS 84
Query: 92 MRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQV 151
+ + +++F ++ P+AFF +G +L+R + D V A++ + +
Sbjct: 85 GKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 144
Query: 152 SGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHG 211
G I+ + SI +++L + + + +S+ T V T L G
Sbjct: 145 IGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKG 204
Query: 212 LPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFF 271
+ G ++ + FD + V + +I + L L+ +L + F
Sbjct: 205 HKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFP 264
Query: 272 ADIG----GKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPE 321
+ + G + + + + LM ++ A+ + M + + L E E
Sbjct: 265 SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 38.3 bits (87), Expect = 0.002
Identities = 33/288 (11%), Positives = 93/288 (32%), Gaps = 9/288 (3%)
Query: 43 FFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVA-----GISRSTAFYSACMRCSKG 97
K + + +H ++ I + + +FV R +
Sbjct: 36 LIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYD 95
Query: 98 IHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIV 157
I KK++ + F++ N G++++R D+ + + +++ + + AL +
Sbjct: 96 IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155
Query: 158 SLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRA 217
++ ++ L + + + + L + V L+ + G+ +++
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 218 HGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIG-- 275
+ FD + N I+ + + ++ + A G
Sbjct: 216 FAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 276 --GKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPE 321
G + V L G ++ + + S+ R+ + + +
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 597 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.37 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.17 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.14 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.94 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.33 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.31 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.18 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.15 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.13 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.09 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 97.05 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.04 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.98 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.95 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.95 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.92 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.88 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.84 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.84 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.84 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.82 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.78 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.78 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.77 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 96.76 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.75 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.74 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.74 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.73 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.7 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.7 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.66 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.64 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.58 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.53 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.49 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.48 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.44 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.42 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.4 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.4 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.38 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.38 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.35 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.34 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.26 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.26 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.25 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.25 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.24 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.23 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.21 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.2 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.17 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.17 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.17 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.16 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.15 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.12 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.12 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.11 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 96.11 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.09 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.09 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.08 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.05 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.04 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.02 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.01 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.0 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.96 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.95 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.94 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.87 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.8 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.79 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.77 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.77 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.71 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.62 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.6 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.58 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.57 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.5 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.47 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.43 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.4 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.31 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.28 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.28 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.26 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.23 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.17 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.14 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.13 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.11 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.1 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.1 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.99 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.95 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.9 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.88 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.87 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.79 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.78 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.76 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.73 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.68 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.6 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.57 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.54 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.53 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.46 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.42 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.4 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.39 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.36 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.33 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.32 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.31 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.29 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 94.27 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.24 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.17 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.17 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.17 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.16 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.12 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.11 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.01 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.98 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.92 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.91 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.91 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.87 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.85 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.83 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.78 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.77 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.71 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.71 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.7 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.69 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.67 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.63 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.6 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.48 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.41 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.22 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.87 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.82 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.79 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.78 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.73 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.7 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.7 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.69 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.58 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.57 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.4 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.32 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.28 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.05 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.0 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.95 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.67 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.31 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.17 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.11 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.06 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.87 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.71 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.59 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.37 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 90.21 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.14 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.82 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.72 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.6 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.59 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.54 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.78 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.65 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.34 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.33 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.3 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.01 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.76 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.23 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.18 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.9 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.6 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.74 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.39 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.75 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.32 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.27 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 84.04 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.64 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.13 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 82.88 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 81.42 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 81.15 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.04 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-71 Score=545.94 Aligned_cols=226 Identities=34% Similarity=0.479 Sum_probs=214.7
Q ss_pred cEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+|+|+||||+|+ +.+++|+||||+|++||++|||||||||||||+++|+|+|+ ++|+|.|||+|+++++.++||++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 489999999996 45679999999999999999999999999999999999984 7899999999999999999999999
Q ss_pred EEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
||||+|+||++||+|||.++. .+++++++++++.+++++++..+ +|++|.+|++|.+|||||||||||||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 999999999999999999875 68999999999999999999998 9999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE---------ecCchhHhhHhhh
Q psy1502 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV---------SSFGFFFSKDLIE 565 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive---------~~~g~y~~l~~~~ 565 (597)
||||||||+||+.+++.|++.|.++.+++|+|+||||+++++.||||+||++|+|+| +.++.|+++|+.+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998 4466788888654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4e-71 Score=550.16 Aligned_cols=229 Identities=32% Similarity=0.483 Sum_probs=218.8
Q ss_pred CcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhc
Q psy1502 337 VLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~ 414 (597)
..|+|+|+||+|+|++. +++|+||||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.++||+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 46789999999999654 689999999999999999999999999999999999995 7899999999999999999999
Q ss_pred CcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
+|+||||+|+||++||+|||+++. +.+++++++|++.+++++|+..+ +||||.+|++|.+|||||||||||||||+++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999874 68999999999999999999998 9999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
|+|||||||||+||++||..|++.|.++.+++|+|+||||+++++.||||++|++|+|++ ++++.|+++|..
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~~ 252 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 678899999875
Q ss_pred h
Q psy1502 565 E 565 (597)
Q Consensus 565 ~ 565 (597)
+
T Consensus 253 Q 253 (255)
T d2hyda1 253 Q 253 (255)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-69 Score=538.80 Aligned_cols=229 Identities=31% Similarity=0.501 Sum_probs=218.2
Q ss_pred CcccEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc
Q psy1502 337 VLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~ 414 (597)
..|+|+|+||+|+|++. +++|+||||+|++||++|||||||||||||+++|+|+| |++|+|.+||+|+++++.++||+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 35789999999999754 57999999999999999999999999999999999998 57899999999999999999999
Q ss_pred CcEEEeCCCCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|+||||+|++|++|+++|+.++. ..+++++++|++.+++++|++.+ +||+|.+|++|.+|||||||||||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999998863 57899999999999999999998 999999999999999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDL 563 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~ 563 (597)
+|+|||||||||+||++++..|++.|+++.+++|+|+||||+++++.||+|+||++|+|++ ++++.|+++|+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 66889999998
Q ss_pred hh
Q psy1502 564 IE 565 (597)
Q Consensus 564 ~~ 565 (597)
.+
T Consensus 250 ~Q 251 (253)
T d3b60a1 250 MQ 251 (253)
T ss_dssp HT
T ss_pred Hc
Confidence 54
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5e-70 Score=539.59 Aligned_cols=225 Identities=30% Similarity=0.497 Sum_probs=214.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||||+|++.+++|+||||+|++||++|||||||||||||+++|+|+| |++|+|.+||+|+++++.+.||++||||
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 81 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEE
Confidence 799999999987788999999999999999999999999999999999998 5789999999999999999999999999
Q ss_pred eCCCCCCCccHHhhcccC--CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLFSGTLRKNLDPF--EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~--~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||+|++|++||+||+.++ ...++++++++++.+++.+++..+ +|++|.+|++|.+|||||||||||||||+++|+||
T Consensus 82 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~il 161 (242)
T d1mv5a_ 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (242)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred ccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999875 357899999999999999999988 99999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|||||||+||++++..|++.|+++.+++|+|+||||+++++.||||+||++|+|++ ++++.|++++..+
T Consensus 162 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 5677888888654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-68 Score=531.14 Aligned_cols=227 Identities=25% Similarity=0.401 Sum_probs=213.5
Q ss_pred CcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHh
Q psy1502 337 VLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 337 ~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr 413 (597)
..|.|+|+||||+||+. .++|+||||+|++||++|||||||||||||+++|+|+| |++|+|++||+|+++++.+.+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 35789999999999753 46999999999999999999999999999999999999 5789999999999999999999
Q ss_pred cCcEEEeCCCCCCCccHHhhcccC--CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPF--EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~--~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
++|+||||+|++|++||+||+.++ ...+++++.++++.++++++++.+ +|++|.++++|.+|||||||||||||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 999999999999999999999986 357788999999999999999998 99999999999999999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFS 560 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~ 560 (597)
++|+|||||||||+||+.++..|++.|.++.+ ++|+|+||||+++++.||||+||++|+|++ +++|.|++
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHH
Confidence 99999999999999999999999999988764 789999999999999999999999999999 56778888
Q ss_pred hHh
Q psy1502 561 KDL 563 (597)
Q Consensus 561 l~~ 563 (597)
||+
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred Hhc
Confidence 775
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-57 Score=454.84 Aligned_cols=197 Identities=27% Similarity=0.422 Sum_probs=182.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+|+|++| .++|||+||||+|++||++|||||||||||||+++|+|++ |++|+|.+|| +|+|
T Consensus 38 ~i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~ 101 (281)
T d1r0wa_ 38 NVSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 101 (281)
T ss_dssp --CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEE
T ss_pred cEEEEEcCC---CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEE
Confidence 455665554 3468999999999999999999999999999999999998 5789999998 5999
Q ss_pred EeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
|||++++|++||+|||.++...++.+++++++.+++.+++..+ +|++|.+|++|.+|||||||||+|||||+++|+|||
T Consensus 102 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ill 181 (281)
T d1r0wa_ 102 CSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181 (281)
T ss_dssp ECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred EeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchh
Confidence 9999999999999999998888899999999999999999998 999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 498 LDEATANVDPKTDLLIQRT-IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||+||+.++..|.+. +..+.+++|+|+||||++.++.||||++|++|+|++
T Consensus 182 LDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~ 237 (281)
T d1r0wa_ 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237 (281)
T ss_dssp EESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEE
T ss_pred hcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999876 455667899999999999999999999999999998
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.2e-53 Score=411.91 Aligned_cols=205 Identities=27% Similarity=0.356 Sum_probs=172.8
Q ss_pred EEEEeeEEEeCCCC---ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----
Q psy1502 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL---- 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~~---~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l---- 412 (597)
|+++||+++|+.+. .+|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.+||+|+..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 78999999995432 4799999999999999999999999999999999998 578999999999999997765
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccC------CCCChHHHH-HHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPF------EKYPDYVLW-TALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~------~~~~~e~i~-~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRI 483 (597)
|++||||+|++.||+ -|++||+.++ ...+.++.. ++.+ .++. .|+.. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~-~~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKM-AELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHH-TTCCGGGTTCCGGGSCHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHH------HHHh-hchhhhhhcCChhhCCHHHHHHH
Confidence 467999999999996 5999998642 133444332 2222 1211 34433 23444678999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||+.+|+|||||||||+||+.+...|++.|.++.+ ++|+|+|||+++.++.||||++|++|+|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998743 789999999999998899999999999997
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-52 Score=408.05 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++|||++|++ .+|+||||+|++||.+||+||||||||||+++|+|+. |++|+|++||+|+.+++.. |++||||
T Consensus 2 i~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEE
T ss_pred EEEEEEEEEeCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcceee
Confidence 789999999954 4899999999999999999999999999999999997 6789999999999988765 7899999
Q ss_pred eCCCCCCC-ccHHhhcccC----CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFS-GTLRKNLDPF----EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~----~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
||++.||. .|++||+.++ ....++++.++++..++. .........||||||||+||||||+.+|+
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE----------HLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT----------TTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcch----------hhHhCChhhCCHHHhcchhhhhhhhccCC
Confidence 99999996 5999999753 223455677666655443 33445567899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||||+||+.+...+++.|.++. .+.|+|+|||++..+.. ||||++|++|+|++
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred ceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998874 37899999999998876 99999999999998
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-52 Score=407.94 Aligned_cols=199 Identities=23% Similarity=0.344 Sum_probs=147.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|+ +.++|+||||+|++||++||+||||||||||+++|.|++ |++|+|.+||+++.+.+.. |++||||
T Consensus 1 Iev~nv~k~yg-~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEE
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeee
Confidence 78999999995 467999999999999999999999999999999999998 6789999999999988754 6789999
Q ss_pred eCCCCCCC-ccHHhhcccCC---CCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFE---KYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~---~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
||++.||. .|++||+.++. ..+. +++.++++..++.++. ......||||||||+||||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~----------~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL----------DRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC-------------------------------CHHHHHHT
T ss_pred ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhh----------hCChhhCCHHHHHHHHHHHHHhc
Confidence 99999996 59999998642 2232 3355566666554432 33456899999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...|++.|.++. .++|+|+|||++..+.. ||||++|++|+|++
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~ 211 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 211 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998864 38999999999999876 99999999999998
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.2e-52 Score=404.83 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=173.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||+|+...+.. |++|||
T Consensus 6 ~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 82 (239)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEEC-CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEE
Confidence 499999999996 467999999999999999999999999999999999998 5789999999999988864 678999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.||+ .|++||+.++. ..+.+++.+.++ +.++. -|++.........||||||||++|||||+.+|+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~-~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR-----WAAEL-LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHH-----HHHHH-TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCChhhhcCChhhCCHHHHHHHHHHhhhccCCC
Confidence 999999996 69999998753 456555443222 22222 356666677788999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||||+||+.+...|.+.|.++.+ ++|+|+|||++..+.. ||||++|++|+|++
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~ 217 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 217 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998743 7999999999999965 99999999999998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-51 Score=404.78 Aligned_cols=202 Identities=28% Similarity=0.392 Sum_probs=174.6
Q ss_pred EEEEeeEEEeCCCC---ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh
Q psy1502 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR 413 (597)
Q Consensus 341 I~f~nVsf~Y~~~~---~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr 413 (597)
|+++||+++|+.+. .||+||||+|++||.+||+||||||||||+++|.|+. |++|+|.+||+|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 78999999996442 5899999999999999999999999999999999998 57899999999999988655 56
Q ss_pred cCcEEEeCCCCCCCc-cHHhhcccC---CCCCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 414 SNISIIPQDPVLFSG-TLRKNLDPF---EKYPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
++||||||++.||+. |++||+.++ ...+. +++.++++.+++.+ ........||||||||+||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~----------~~~~~~~~LSGG~~QRvai 151 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD----------KHDSYPSNLSGGQKQRVAI 151 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT----------TTSSCBSCCCHHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------hhhCChhhCCHHHHHHHHH
Confidence 789999999999975 999999752 22333 33555555555432 3344567999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+.+|+|||||||||+||+.+...|++.|.++.+ +.|+|+|||++..+.. ||||++|++|+|++
T Consensus 152 AraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~ 221 (240)
T d3dhwc1 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (240)
T ss_dssp HHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE
T ss_pred hhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988744 7899999999999976 99999999999999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.8e-52 Score=404.86 Aligned_cols=207 Identities=24% Similarity=0.323 Sum_probs=175.9
Q ss_pred cEEEEeeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC---hHHHhc
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP---LSKLRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~---~~~lr~ 414 (597)
.|+++||+++|+.+ ..+|+||||+|++||++||+||||||||||+++|.|++ |++|+|++||+|+...+ ...+|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999643 57999999999999999999999999999999999998 57899999999998765 344578
Q ss_pred CcEEEeCCCCCCCc-cHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 415 NISIIPQDPVLFSG-TLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 415 ~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+||||||++.||+. |++|||.++ ...+.++..+-++ +.++. -|++.........||||||||+||||||+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~-----~~l~~-~gL~~~~~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE-----EVAKI-LDIHHVLNHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHH-----HHHHH-TTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHH-----HHHhh-cChHhhhhCChhhCCHHHHhHHHHHhHHh
Confidence 89999999999975 999999864 2455544333221 11221 35555556667789999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|+|||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++
T Consensus 157 ~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~ 221 (242)
T d1oxxk2 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (242)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred hcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988743 7899999999998855 99999999999999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.7e-51 Score=403.22 Aligned_cols=202 Identities=22% Similarity=0.315 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH----Hhc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK----LRS 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~----lr~ 414 (597)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+... .|+
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred cEEEEeEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 489999999996 456999999999999999999999999999999999998 57899999999998776544 367
Q ss_pred CcEEEeCCCCCCCc-cHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPVLFSG-TLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+||||||+|.||+. |++||+.++ ...+.++ +.++++..+ +..........||||||||++||
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~----------l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG----------LTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT----------CGGGTTCCGGGSCHHHHHHHHHH
T ss_pred cceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcC----------ChhHhcCChhhCCHHHHHHHHHH
Confidence 89999999999975 999999763 2445444 344444443 33334455678999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||+.+|+|||||||||+||+.+...|++.|.++.+ +.|+|+|||+++.+.. ||||++|++|+|++
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~ 220 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 7899999999999876 99999999999998
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.9e-49 Score=388.21 Aligned_cols=207 Identities=21% Similarity=0.332 Sum_probs=173.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc-CcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS-NIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~-~I~ 417 (597)
-|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.|+...+.+..++ .|+
T Consensus 6 ~Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~ 84 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred EEEEeeEEEEEC-CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhccc
Confidence 389999999995 457999999999999999999999999999999999998 57899999999999988777644 599
Q ss_pred EEeCCCCCCCc-cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+||++.+|+. |++||+.++. ..+.++..+.++.+- +.. .+++........+||||||||++|||||+.+|+
T Consensus 85 ~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLF---PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHC---HHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred ccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHH--HHh---hChHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 99999999975 9999986532 223333333332221 111 123333445567899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|||||||++||+.+...|.+.|+++. +++|+|+|||+++.+.. ||||+||++|+|++
T Consensus 160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~ 219 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred EeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998874 46899999999999865 99999999999998
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.3e-49 Score=392.07 Aligned_cols=202 Identities=23% Similarity=0.311 Sum_probs=171.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh---------
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL--------- 409 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~--------- 409 (597)
.|+++||+++|+ +.+||+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++...+.
T Consensus 2 ~Lev~nl~k~yg-~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 489999999995 457999999999999999999999999999999999998 578999999999976532
Q ss_pred ----HHHhcCcEEEeCCCCCCC-ccHHhhcccC----CCCChHH----HHHHHHHhcHHHHHHhcCCCchhh-hCCCCCC
Q psy1502 410 ----SKLRSNISIIPQDPVLFS-GTLRKNLDPF----EKYPDYV----LWTALQEVELKDMIMEGAGLNMTV-YEGGTNF 475 (597)
Q Consensus 410 ----~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~----~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~L 475 (597)
..+|++||||||+|.+|+ .|++||+.++ ...+..+ +.++++.+++ .... ......|
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~p~~L 150 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI----------DERAQGKYPVHL 150 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC----------CHHHHTSCGGGS
T ss_pred HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCC----------chhhhccCcccc
Confidence 357889999999999997 5999998643 2344443 3333443433 2222 2224679
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||||||||+||+.+...|++.|+++.+ ++|+|+|||++..+.. ||||+||++|+|++
T Consensus 151 SGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~ 229 (258)
T d1b0ua_ 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229 (258)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 6899999999999976 99999999999998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.9e-48 Score=381.94 Aligned_cols=206 Identities=19% Similarity=0.300 Sum_probs=179.0
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|.|+++|++++|. +++||+||||+|++||.+||+||||||||||+++|+|++ |++|+|.++|.|+.+ ....+|++++
T Consensus 1 gaI~v~nl~k~yg-~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i~ 78 (238)
T d1vpla_ 1 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 78 (238)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CCEEEEeEEEEEC-CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhEe
Confidence 4699999999995 467999999999999999999999999999999999987 578999999999987 4567899999
Q ss_pred EEeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||||++.+|. .|++||+.+. ...+++++.+.++.+ ++. .|++....+...+||||||||++|||||+.+|
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~-~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEI-AGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHH-HCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHh-CCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999996 5999999653 244556555444322 111 35666677777899999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||||||++||+.+...|.+.|+++. .++|+|++||+++.+.. ||||++|++|+|++
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~ 213 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 213 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998864 47999999999999985 99999999999998
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.8e-48 Score=385.64 Aligned_cols=206 Identities=23% Similarity=0.254 Sum_probs=173.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc-CcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS-NIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~-~I~ 417 (597)
-|+++||+++|+ +.+||+||||+|++||.+||+||||||||||+++|+|++ |++|+|.++|.|+...++...++ .|+
T Consensus 4 iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 4 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred eEEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence 389999999996 456999999999999999999999999999999999998 57899999999999999888665 599
Q ss_pred EEeCCCCCCC-ccHHhhcccCCC----------------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFEK----------------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~~----------------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
||||+|.+|. .|++||+.++.. ..+++..+.+ .+.++. .|++........+||||||
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA-----FKILEF-LKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH-----HHHHHH-TTCGGGTTSBGGGSCHHHH
T ss_pred ccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHH-----HHHHHh-cCcchhccCchhhCCcHHH
Confidence 9999999886 599999965311 1222222111 122221 3555555556778999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++|||||||++||+.+...|.+.|+++. +++|+|+|+|+++.+.. ||||+||++|+|++
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999998874 47999999999999865 99999999999998
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.1e-47 Score=369.53 Aligned_cols=212 Identities=25% Similarity=0.315 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+++ ++..+|.+- .+ ||||+++ ||.+||+||||||||||+++|+|+. |++|+|.+||+|+.++++. |++||||
T Consensus 3 l~v-~~~k~~g~~--~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGNF--RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETTE--EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCC
T ss_pred EEE-EEEEEECCE--EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceee
Confidence 344 456666432 23 8999995 6899999999999999999999998 5789999999999998865 7899999
Q ss_pred eCCCCCCC-ccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 420 PQDPVLFS-GTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
||++.||+ -||+||+.++ ...+.++..+- +.+.++. -|++.........||||||||++|||||+.+|+|||
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~-~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEK-LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHT-TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred ccchhhcccchhhHhhhhhhcccCHHHHHHH-----HHHHHHh-cCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceE
Confidence 99999997 5999999886 34454443321 1222322 356666677788999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEEecCchhHhhHhhhcc
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGT 567 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive~~~g~y~~l~~~~~~ 567 (597)
||||||+||+.+...+++.|+++.+ +.|+|+|||.++.+.. ||||++|++|+|++ .|.-.+++.....
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~--~G~~~el~~~~~~ 220 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE--KGKLKELFSAKNG 220 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE--EECHHHHHHSCCS
T ss_pred ecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE--EecHHHHhcCCCH
Confidence 9999999999999999999988754 7899999999999876 99999999999998 3333455544333
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.3e-45 Score=356.25 Aligned_cols=197 Identities=18% Similarity=0.276 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++|++|+|.++|.|+...+...++.+.+|++
T Consensus 4 l~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~ 78 (231)
T d1l7vc_ 4 MQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 78 (231)
T ss_dssp EEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEEC
T ss_pred EEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeee
Confidence 7899998755 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCccHHhhcccCC-CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc------
Q psy1502 421 QDPV-LFSGTLRKNLDPFE-KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR------ 491 (597)
Q Consensus 421 Q~~~-LF~gTI~eNI~~~~-~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~------ 491 (597)
|+.. .|..++.+|+.++. +.+ .+.+.++++.. |++..++....+||||||||++|||||++
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~ 148 (231)
T d1l7vc_ 79 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN 148 (231)
T ss_dssp SCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred ccccCCccccHHHHhhhccchhhHHHHHHHHHHhc----------CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccC
Confidence 9876 57789999997642 323 34454544443 44555667777999999999999999997
Q ss_pred -CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 -NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 -~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|+|||||||||+||+.+...+.+.|+++. .++|+|+|+|+++.+. .||||++|++|+|++
T Consensus 149 p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~ 212 (231)
T d1l7vc_ 149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 212 (231)
T ss_dssp TTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 779999999999999999999999998864 5889999999999875 599999999999987
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.4e-44 Score=344.80 Aligned_cols=189 Identities=20% Similarity=0.318 Sum_probs=158.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||||+|+ ++||+||||+|++||.+||+||||||||||+++|+|++ |++|+|.+||+++.+ ++.+++|
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEE
T ss_pred eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEE
Confidence 489999999994 47999999999999999999999999999999999987 678999999999864 5789999
Q ss_pred EeCCCCCCC-ccHHhhccc-----CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFS-GTLRKNLDP-----FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~-----~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
+||++.++. -|+.||+.+ +.+.+++++.++++..++. +++..+ .+||||||||++|||||+++
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~----~~LSgG~~qrv~ia~al~~~ 143 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-------DLKKKL----GELSQGTIRRVQLASTLLVN 143 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-------CTTSBG----GGSCHHHHHHHHHHHHTTSC
T ss_pred EeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc-------cccccc----CcCCCcHHHHHHHHHHHhcC
Confidence 999999886 499999853 3456777877776654431 233334 46999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|++|||||||++||++++..+++.|.++.+++++++|+|+- .+..||++.+|.+
T Consensus 144 ~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999887665555555553 3467999998753
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=5.1e-24 Score=215.03 Aligned_cols=300 Identities=14% Similarity=0.137 Sum_probs=226.4
Q ss_pred hHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 19 REEYRQFEILKN----DTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRC 94 (597)
Q Consensus 19 ~~~~~~~~~~~~----~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (597)
...||...++.. +.++.....|.++..++|+....... .....+.+.++++.++..++.+++.+.....+.++
T Consensus 11 ~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (319)
T d3b60a2 11 IAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR---SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKV 87 (319)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH---HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Confidence 344554444333 34556666776677777765543211 01112234444555566677888888889999999
Q ss_pred HHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 95 SKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLY 174 (597)
Q Consensus 95 ~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~ 174 (597)
..++|.++|++++++|+++|+++++|++++|+++|++.+...+...+...+..++.++++++++++.+|.+++++++.++
T Consensus 88 ~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~ 167 (319)
T d3b60a2 88 VMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAP 167 (319)
T ss_dssp HHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 175 LFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLID 254 (597)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (597)
+..++...+.+..++..+......++..+.+.|.++|+++||+|+.|+++.+++++..++..+...+.............
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (319)
T d3b60a2 168 IVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 247 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccchh
Confidence 77777777777666666666667778889999999999999999999999999999887765554443333333333333
Q ss_pred HHHHHHHHHHHHHHH-HH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy1502 255 FLCLLYLSTILISFF-FF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPE 321 (597)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 321 (597)
++......+++..+. .. .++.|.+.+++.++..+..|+..+...+..++++.++.+|+.|++|.|+|
T Consensus 248 ~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 248 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred hhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 332222222111111 11 34667788888888889999999999999999999999999999997765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=3.1e-24 Score=217.26 Aligned_cols=291 Identities=11% Similarity=0.089 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGI----YFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (597)
.+.+++.+..|.++..++|.....+...........+.. ++++.++..++.+++.++..+.+.++..++|.++|++
T Consensus 24 ~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 103 (323)
T d2hyda2 24 IIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNH 103 (323)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 334567888888888888887654322111111111111 1222333345667777788889999999999999999
Q ss_pred HHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 106 VVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLR 185 (597)
Q Consensus 106 ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~ 185 (597)
++++|++||+++++|++++|+++|++.+++.+...+...+..++.++++++++++++|.++++.++..++..++...+.+
T Consensus 104 ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 183 (323)
T d2hyda2 104 LQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183 (323)
T ss_dssp HHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999988889999999999999999999999998888888877777777777
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 186 TSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST-I 264 (597)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 264 (597)
..++..+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...+..............+..+...+ +
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l 263 (323)
T d2hyda2 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVI 263 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccccchhhHHHHH
Confidence 777776666677788899999999999999999999999999999887766554443333333333333332222221 1
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy1502 265 LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEP 320 (597)
Q Consensus 265 ~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 320 (597)
+++.... ..+.|.+.+++.+...+.+++..+...+.+++++.++++|+.|++|.||
T Consensus 264 ~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 264 GVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 1222221 3456777777888888889999999999999999999999999998654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.78 E-value=1.2e-20 Score=175.51 Aligned_cols=164 Identities=11% Similarity=-0.019 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLW 446 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~ 446 (597)
+++|+||+|||||||++.|+|+++ +.|.+.+++.+................++.+.++..+..++...++ ..+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcch--
Confidence 689999999999999999999875 6799999998776655433333344445555555555554443322 111111
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC--HHHHHHHHHHHHHhcCCc
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD--PKTDLLIQRTIRKKFADC 524 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD--~~te~~I~~~l~~~~~~~ 524 (597)
..+|+|++||.++|+|+.++|++|++|||+...+ .+....+.+.+++ .++
T Consensus 80 --------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 80 --------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred --------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhcc--CCC
Confidence 1478999999999999999999999999865543 3333333333332 368
Q ss_pred EEEEeccCchhHhhcCEEEEEeCCeEEE----ecCchhHhhH
Q psy1502 525 TVLTIAHRLHTIMDSDKVLVMDSGVAVV----SSFGFFFSKD 562 (597)
Q Consensus 525 TvI~IaHrlsti~~~D~Iivl~~G~Ive----~~~g~y~~l~ 562 (597)
|+|+++|+.+....||++..+++|++++ +++..+.+..
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd~~~~~i~ 173 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred EEEEEEccHHHHHhhceEEEEeCCEEEEECCccHHHHHHHHH
Confidence 9999999999888999999999999998 3344444444
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1.3e-12 Score=136.80 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEE
Q psy1502 473 TNFSVGQRQLICLARAI----VRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAl----l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl 545 (597)
..||||||.++++|=.+ +.++||++||||+++||+.+...+.+.|.++.. +.-+|+|||++.++..||++|.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45699999998876433 578899999999999999999999999988743 44599999999999999998865
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=9.7e-11 Score=117.26 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCChhHHHHHHHHHH----HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE--EeC
Q psy1502 474 NFSVGQRQLICLARA----IVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV--MDS 547 (597)
Q Consensus 474 ~LSGGQrQRIaIARA----ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv--l~~ 547 (597)
.+|+|||+.+.++-. ...+|+++++|||-++|+|.....+.+.|++..++.=+|++||+...+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeC
Confidence 579999999877765 35577899999999999999999999999999888899999999999999999966 677
Q ss_pred C
Q psy1502 548 G 548 (597)
Q Consensus 548 G 548 (597)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=6.6e-07 Score=80.83 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=81.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC-------CC
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF-------EK 439 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-------~~ 439 (597)
+.|.|+||+|+|||||++.+.+.+ +..+.+.+.+.+........+.....-+.|+...+.....++.... ..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 358999999999999999999865 4455555544443322222122223333343333322222332211 01
Q ss_pred CChHHHHHHHHHhcHHHHHHhc--CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHH
Q psy1502 440 YPDYVLWTALQEVELKDMIMEG--AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517 (597)
Q Consensus 440 ~~~e~i~~a~~~a~l~~fI~~l--~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l 517 (597)
...+++...... ..+.+... .+.+..+.+.....+......+...|.++.+|+++++...+..-+.. ..+.+.+
T Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 157 (189)
T d2i3ba1 82 VDLTSFEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEI 157 (189)
T ss_dssp ECHHHHHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHH
T ss_pred ccHHHHHHHHHH--HHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcch--HHHHHHH
Confidence 122222111100 01111112 35666666666677777788888888888888776664443332222 2234445
Q ss_pred HHhcCCcEEEEecc
Q psy1502 518 RKKFADCTVLTIAH 531 (597)
Q Consensus 518 ~~~~~~~TvI~IaH 531 (597)
.+. ++.+++.++.
T Consensus 158 ~~~-~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RNR-KDVKVFNVTK 170 (189)
T ss_dssp HTT-CCSEEEECCS
T ss_pred hCC-CCCeEEEECh
Confidence 443 4567666653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.33 E-value=0.00013 Score=63.35 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.|.|+|++|||||||++.|.+
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999997754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=4.5e-05 Score=69.12 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
|+.+.|+||||||||||++.|..-+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999997644
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.20 E-value=7.3e-05 Score=66.49 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+.|.|+||+||||||+++.|.+-
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999864
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.18 E-value=7.7e-05 Score=66.37 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++|-+|.|+|+|||||||+.+.|..-
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999964
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.15 E-value=0.0011 Score=61.26 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=16.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+...+++|||+|+||||.+-=|+..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44669999999999998876666544
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.13 E-value=0.0012 Score=63.30 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=26.8
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-|+++-.=+.+|+.+.|.|+||+||||++.-++.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444433378999999999999999999877763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=6.8e-05 Score=66.29 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++|+|++|||||||++-|.+-+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.00013 Score=68.27 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++++++|+||+|||||+|.|.+-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCCHHHHHHhhcch
Confidence 5899999999999999999999863
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.05 E-value=0.13 Score=48.23 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D 129 (597)
...+..++++.++..++..+..+...+...+...++..++-+++.+ ...+.+.+..-++=+.|
T Consensus 52 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~----~ll~~~~~~~~~~~~g~ 114 (319)
T d3b60a2 52 RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG----HMMGMPVAFFDKQSTGT 114 (319)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTCCSTHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHHHH----hhcccchhhcccccccc
Confidence 3444445555555566666666677777777778887777777743 44456666655444444
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.04 E-value=0.00014 Score=64.48 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
|+|-.|+|.||+||||||+++.|..-
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 68889999999999999999999863
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.98 E-value=0.00012 Score=65.32 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++|+|+||+|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998644
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.95 E-value=0.0017 Score=60.67 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.9
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++|+.+.|.|++|||||||+.-++.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999977764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0012 Score=63.12 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
.||+.+.|+|++|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 359999999999999999987665
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00019 Score=66.46 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccC---------------CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEV---------------EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~---------------~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
+|..+.|+||||||||||.+.|+.-+|. .|+ +||+|..-++.+.+.+.+. ++-++..+++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i~---~g~flE~~~~ 75 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMIS---RDAFLEHAEV 75 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHhh---hhhheeEEEE
Confidence 5899999999999999999988643221 244 4788877777777766542 4444444555
Q ss_pred Hhh
Q psy1502 431 RKN 433 (597)
Q Consensus 431 ~eN 433 (597)
..|
T Consensus 76 ~g~ 78 (205)
T d1s96a_ 76 FGN 78 (205)
T ss_dssp TTE
T ss_pred CCc
Confidence 444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.91 E-value=0.00013 Score=66.01 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.|||.|++|||||||++.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 599999999999999999987553
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00059 Score=64.38 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+..++|+||+-. |..+....+.+.+....+...+|++|++++-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 466999999965 78888888888888766667789999988644
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00022 Score=62.99 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+.+..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00021 Score=62.15 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+.|.|+||+||||||+.++|+.-
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.84 E-value=0.00041 Score=68.74 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=33.1
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCce-EEEcceeCCCCCh
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGV-IKIDDIDTEDVPL 409 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~-I~idg~di~~~~~ 409 (597)
+..|..+.|+|++||||||+++.|+++.|+.-. |.| .|-.++.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l 207 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVF 207 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhc
Confidence 456677999999999999999999998875443 455 34455544
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.84 E-value=0.00026 Score=62.61 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.+.|.|.|++||||||+++.|...++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.82 E-value=0.00018 Score=63.75 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccC----CceEEEccee
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEV----EGVIKIDDID 403 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~----~G~I~idg~d 403 (597)
+.++|+|++|||||||+.-|.+.+.. -|.|.-|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence 46899999999999999877764422 2555545543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.78 E-value=0.00025 Score=63.30 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++.|+|.|++||||||+++.|...+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00015 Score=65.69 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|-.|.|+|++||||||+++.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.77 E-value=0.00025 Score=62.53 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|.|+||+||||||+++.|+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.76 E-value=0.00072 Score=64.97 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc---ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc--ccCC-CCCh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL---AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL--DPFE-KYPD 442 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l---~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI--~~~~-~~~~ 442 (597)
.|||+|+.|||||||+..|+.. .+..|++. +|....++.++.-.+++++-+.-..+--...+=|+ +||. ++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~- 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV- 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh-
Confidence 4799999999999999998643 34457765 77888888888888887655443222222233455 4553 333
Q ss_pred HHHHHHHHHh
Q psy1502 443 YVLWTALQEV 452 (597)
Q Consensus 443 e~i~~a~~~a 452 (597)
.++..+++.+
T Consensus 82 ~e~~~al~~~ 91 (267)
T d2dy1a2 82 GEIRGALEAA 91 (267)
T ss_dssp HHHHHHHHHC
T ss_pred hhhhhhhccc
Confidence 3455565555
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.75 E-value=0.0015 Score=62.66 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.7
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
-+++..-+-+.||+|+|||+|++.+++-.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 35566779999999999999999998854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.74 E-value=0.00028 Score=62.02 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+.|.|+||+||||||+++.|.+-+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999755
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.001 Score=63.46 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=23.3
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++...+.+.||+|||||++++.|++-+
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 44555678999999999999999999743
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.70 E-value=0.00039 Score=62.97 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
|+|-++.|+||+||||||+.+.|+.-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999999999853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.70 E-value=0.0038 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.2
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-++-+.|-++|++||||||+++-++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 36678999999999999999987753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.69 E-value=0.00016 Score=67.91 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEE
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~ 398 (597)
+|++++++|+||+|||||+|.|.+-.. ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 588999999999999999999997432 456665
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.66 E-value=0.0004 Score=63.05 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+...|.|+||+||||||+++.|+.-|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998644
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.00037 Score=63.33 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|||||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.64 E-value=0.0031 Score=58.76 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=33.2
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEeccCchhHh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRK-KF-ADCTVLTIAHRLHTIM 537 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaHrlsti~ 537 (597)
.+..++|+||..++-|++.-..+-.++-+ +. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 35569999999999999876655444322 22 2678999999866544
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00047 Score=62.19 Aligned_cols=23 Identities=13% Similarity=0.494 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+.+.|+||||+||+||++.|+.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00071 Score=60.72 Aligned_cols=21 Identities=52% Similarity=0.841 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|||+|++|+|||||++.|+|
T Consensus 10 kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00056 Score=63.08 Aligned_cols=22 Identities=50% Similarity=0.709 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|||.|+|||||||+.+.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.48 E-value=0.00059 Score=61.05 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.44 E-value=0.0004 Score=64.34 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc-cccC--CceEEEcceeCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR-LAEV--EGVIKIDDIDTED 406 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~-l~~~--~G~I~idg~di~~ 406 (597)
++|.+|.|.|.||||||||++.|.. +... --.+.+||-++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 6788999999999999999999985 4332 2457788866543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00062 Score=61.64 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=31.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc--------------CCceEEEcceeCCCCChHHHhcC
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRLAE--------------VEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l~~--------------~~G~I~idg~di~~~~~~~lr~~ 415 (597)
|.|+|||||||+||++.|+.-+| -.|++ ||+|..-++.+.+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~ 61 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHHH
Confidence 78999999999999998864221 13544 6777666666665544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.40 E-value=0.013 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..+.+|||+|+||||.+--|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999998887777654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0054 Score=57.45 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=31.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHH-HHHhc--CCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRT-IRKKF--ADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~-l~~~~--~~~TvI~IaHrlsti 536 (597)
+..++|+||..++=|++....+-.+ ++.+. .++.+|+.||.....
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 4569999999999999877766555 44442 245777777765443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.0064 Score=56.02 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+...+++|||+|+||||.+-=|+..+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999998766666433
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.0007 Score=61.53 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=58.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHH
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV 444 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~ 444 (597)
++-..+.|+||+||||||++++|+.-| |-+.|+.- +-+|+.+ .+...-....+++-..-+....+..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~---g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY---SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS---SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh---CCeEEehh-------HHHHHHh---hhcccHHHHHHHHhhhccccccchh
Confidence 345679999999999999999998755 44444321 1233321 1222222223332222233345555
Q ss_pred HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 445 i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
+.+....+-...+. ..-+..+-++ ......|...+.+.+.....++.||=
T Consensus 73 ~~~~~~~~~~~~~~---~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~ 122 (196)
T d1ukza_ 73 TLALLRNAISDNVK---ANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDC 122 (196)
T ss_dssp HHHHHHHHHHHHHH---TTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEEC
T ss_pred HHHHHHHHHHhhhc---cCCCceeeec---cchhHHHHHHHHHhccccceeeccCC
Confidence 44444333222221 1111112111 12246688888877665555566663
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.35 E-value=0.00061 Score=60.89 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+.+.|.|++||||||+++.|...+...|
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~~~ 29 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3567889999999999999998665444
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.34 E-value=0.00061 Score=61.23 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|||||++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.00083 Score=59.50 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|+|++|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0012 Score=64.72 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc--CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
.|||.|+|||||||+++.|..+.. ..| ..+..|++|.|..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~------------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH------------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC------------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC------------------CceEEEeeeeeECCchHH
Confidence 579999999999999999987532 111 357788888888765544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=9e-05 Score=67.07 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++.++++.+| .+.|+||+||||||++..|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 45666677665 899999999999999999963
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.00098 Score=58.14 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
|=+|+++|++|+|||||++.|.|-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447999999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.25 E-value=0.00087 Score=59.10 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|.|+|++||||||+.++|+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.24 E-value=0.00075 Score=61.34 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~ 389 (597)
|.|+||||||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.23 E-value=0.001 Score=59.36 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|||++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.21 E-value=0.001 Score=58.03 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.20 E-value=0.00095 Score=59.26 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.|.++|++||||||+.++|+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999974
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.17 E-value=0.00075 Score=60.37 Aligned_cols=21 Identities=57% Similarity=0.844 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l 390 (597)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.17 E-value=0.0011 Score=58.85 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.-+|+|||++|+|||||++-|.+
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445899999999999999999986
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.17 E-value=0.0011 Score=57.36 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|.|+|++|||||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999998875
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.16 E-value=0.00088 Score=60.81 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=62.4
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChH
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e 443 (597)
++++..|.|+||+||||||+++.|+.-| |-..|+--+ -+|+.+. ..+ ....++.+.+.-+...+++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~---g~~~is~g~-------llr~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 70 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY---GYTHLSTGD-------LLRAEVS---SGS-ARGKMLSEIMEKGQLVPLE 70 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT---CCEEEEHHH-------HHHHHHH---HTC-HHHHHHHHHHTTTCCCCHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh---CCeeEeccH-------HHHHHHH---HhH-hhhhhhHHHHhhccCCchh
Confidence 4678899999999999999999998644 333332211 1222111 111 1112344444445566777
Q ss_pred HHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 444 VLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 444 ~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
.+...++.. +... ...+-.+=+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 71 ~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 71 TVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred eeeeehhhh-----hhhcccccccceee---eccchhHHHHHHHHHhCCccchhccccc
Confidence 666554422 2221 211112222 2455567777777776665555556644
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0011 Score=57.25 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0012 Score=58.55 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999873
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.0011 Score=60.31 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|||||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.11 E-value=0.0012 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|.|+||+||||||++++|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.11 E-value=0.0024 Score=61.46 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh---ccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF---RLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~---~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
.|||+|+.|||||||+..|+ |..+..|++. +|..+.++.++...+.+++-..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~ 62 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAA 62 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccc
Confidence 58999999999999999885 3334457764 5666777777776676655433
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.00094 Score=62.38 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999997543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.09 E-value=0.0011 Score=59.83 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|.|.||+||||||++++|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.00084 Score=59.75 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
=+|+|||++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998853
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.05 E-value=0.0013 Score=62.75 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++|+|||||+|.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.05 E-value=0.0013 Score=59.34 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|||.|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999998643
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0034 Score=58.05 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=33.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+.+++|+||+= .+.......+.+.|.+..+...++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34699999985 577778888888898876666677777776554
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.02 E-value=0.0017 Score=58.14 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l 390 (597)
|||||++.+|||||++.|++.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.016 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+-..+++|||+|+||||.+-=|+..+
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999998776666544
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0015 Score=59.05 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+|.|+||+||||||+++.|+.-| |-..|+- -+-+|..+ .+....+...+.+.+.-+...+|+.+...
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~---g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 69 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY---GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITISL 69 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCceEcH-------HHHHHHHH---HhhhhhHHHHHHHHHhcCCccccchhhHH
Confidence 58999999999999999998643 2222221 11133321 12223333445555555556777777666
Q ss_pred HHH
Q psy1502 449 LQE 451 (597)
Q Consensus 449 ~~~ 451 (597)
++.
T Consensus 70 ~~~ 72 (194)
T d1teva_ 70 LKR 72 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.00 E-value=0.0015 Score=58.49 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|.|+||.||||||++++|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998644
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0019 Score=58.43 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=24.0
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++|+.+.|.||+|||||||+.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999887764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.95 E-value=0.0015 Score=59.46 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|.+||.+||||||+++.|++.+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999754
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.94 E-value=0.0016 Score=60.01 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.|||-||+||||||++++|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.87 E-value=0.0021 Score=59.90 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|+|+|+.|||||||++-|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.82 E-value=0.0019 Score=56.92 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~ 389 (597)
|.++|++||||||+.++|..
T Consensus 4 IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999999985
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.002 Score=59.16 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.|+|-||+||||||+.++|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0021 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|.|+||+||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.77 E-value=0.00065 Score=59.31 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.|.|
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.77 E-value=0.0019 Score=58.38 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.-.|+|-|+.||||||++++|....
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998744
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.71 E-value=0.013 Score=59.18 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
=++..+|=+||||+++.|.. |++|.....++-. .|..|+..-|=-+.+.
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~---tGhlV~tTlHa~~a~~ 266 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAVQASL---TGHLVMSTLHTNTAVG 266 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHH---TTCEEEEEECCSSSHH
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHHh---cCCeEEEEeccCchHh
Confidence 34667777899999999987 7777665544432 3566666555544443
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.71 E-value=0.0025 Score=55.80 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++||++|||||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0024 Score=63.06 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE 394 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~ 394 (597)
+.-+|||+||.|||||||++-|.+.+...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 35679999999999999999998765433
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.60 E-value=0.0026 Score=58.21 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.|||.|++||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0022 Score=58.83 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|+.|+|-|+-||||||++++|...+...|
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g 30 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 30 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 589999999999999999999987543333
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.57 E-value=0.0028 Score=56.49 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|.|.||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998544
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0035 Score=57.68 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++|..|+|-|+-||||||++++|..-.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998743
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0042 Score=57.28 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..|+|-|+-||||||++++|......+|
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~ 31 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 31 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence 799999999999999999999985433334
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.43 E-value=0.0018 Score=62.49 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.|||.|+|||||||+.+.|.....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987553
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.40 E-value=0.0033 Score=57.79 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..+++|||+|+||||.+-=|+..+
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999877777654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.31 E-value=0.0035 Score=63.67 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|||+|++|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999965
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.28 E-value=0.0041 Score=54.74 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.=+|++||.+|||||||++-|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhc
Confidence 3344799999999999999998876
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=0.0039 Score=56.74 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.|+|+|++|+|||||++-|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999985
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.033 Score=51.72 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=35.4
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
.+|+|+||+=. |+.+....+.+.|++..++...|++|++++-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence 46999999965 777887788888887667788999999987663
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.23 E-value=0.0043 Score=56.03 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
=.+.|+||.||||||+.+.|+.-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.17 E-value=0.004 Score=58.82 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.-+.++||+|||||||++.|++-.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999843
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.14 E-value=0.0046 Score=54.41 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++||++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999997764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0046 Score=54.56 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++||++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.11 E-value=0.0049 Score=54.36 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0049 Score=54.88 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|.|+||.||||||+++.|+--|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0057 Score=56.56 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.5
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
=+|+|+.+-|.||+|||||||+.-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 38999999999999999999997664
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.99 E-value=0.0054 Score=53.60 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|++||++|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998665
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.0055 Score=53.65 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.0058 Score=55.95 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.|||+|..||||||.++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.0064 Score=53.37 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.87 E-value=0.0055 Score=59.88 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
|+.-+.++||||||||.|++.|++..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 44566799999999999999999853
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.006 Score=53.39 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+|+|+|++|+|||||++-+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4799999999999999998763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.79 E-value=0.006 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|+|+.+-|.||+||||||++--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987554
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.78 E-value=0.0066 Score=52.99 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999997763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.76 E-value=0.0066 Score=54.10 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998773
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0071 Score=53.91 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999998874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0073 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++-+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 6899999999999999998874
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0068 Score=53.56 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++||++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0071 Score=52.91 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.68 E-value=0.013 Score=52.23 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.9
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
++.--+.+ .|.-+.|.|+||+||||++.-|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 44445555 78999999999999999997665
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.60 E-value=0.0057 Score=55.50 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
.|+|-|.-||||||++++|...+...|
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~g 28 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999999999987544334
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.019 Score=52.43 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=31.1
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+.+|+|+||+= .|..++...+.+.|++-.++...|++|++++.+
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 36799999873 344566777777777655555668899997644
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.008 Score=52.46 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++||++|+|||||++-++.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.0082 Score=55.79 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=24.3
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=||+|+.+.|.|++||||||++.-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999987763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.0087 Score=52.73 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|.+||++|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 58999999999999999776
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.0096 Score=55.65 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+-|.||+|+||||++++|++-
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999984
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.40 E-value=0.0078 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-=+|+++|++|+|||||++-+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.009 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.++|++|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.39 E-value=0.01 Score=54.71 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=23.5
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+++|+.+-|.|++|+||||++.-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999988775
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.011 Score=52.10 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.33 E-value=0.012 Score=53.96 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.8
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHH
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAI 387 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL 387 (597)
+++|+.+-|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.0095 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999997653
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.0096 Score=57.27 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.|||-|++|||||||.+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 689999999999999987754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.0097 Score=51.74 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||.+|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.0099 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|+++|.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999999776
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.27 E-value=2 Score=39.54 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccc-hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy1502 19 REEYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLS-TESYIGIYFSLIVGLFVAGISR---STAFYSACMRC 94 (597)
Q Consensus 19 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~-~~~~i~~~~~~~i~~~~~~~~~---~~~~~~~~~~~ 94 (597)
...||..-.+..+.+++......+...++...++.-....... ..........+.++..++..++ .+...+...++
T Consensus 9 ~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (323)
T d2hyda2 9 VKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT 88 (323)
T ss_dssp HGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446655555555455444444334444444444332222112 2222233333333333333322 33444555667
Q ss_pred HHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHH
Q psy1502 95 SKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129 (597)
Q Consensus 95 ~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D 129 (597)
..+++.++-.++. +...+.+.+..-++-+.|
T Consensus 89 ~~~~~~~lr~~l~----~~ll~~~~~~~~~~~~g~ 119 (323)
T d2hyda2 89 SNKILYDIRKKLY----NHLQALSARFYANNQVGQ 119 (323)
T ss_dssp HHHHHHHHHHHHH----HHHHHSCHHHHHTSCHHH
T ss_pred HHhhhHHHHHHHh----hhhhcccccccccccccc
Confidence 7777777766663 334455655554444334
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.027 Score=53.41 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=37.3
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCC-ceEEEcceeCCCCChHHHhcCcEE
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVE-GVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~-G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
=+++|..+-|.||+|||||||+--++.-. .+. -.++||... .++.+. -+.+|+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~-a~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY-ARKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHH-HHHhCC
Confidence 58999999999999999999998887654 233 346777664 344433 344453
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.17 E-value=0.011 Score=51.68 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998873
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.012 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|.++|.+|+|||||++.+.+-
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.011 Score=52.60 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++||.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.16 E-value=0.017 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.5
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
--.|.-|.|+|+||+||||++-.|.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4468889999999999999987765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.12 E-value=0.012 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+..+.|+||+|+|||||++-++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 567899999999999999987764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.011 Score=51.46 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|.|||.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.012 Score=51.85 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999997763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.01 E-value=0.012 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+-+.||+|+||||++++|+.-+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 47899999999999999998754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.012 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+|.++|++|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3789999999999999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.012 Score=51.29 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|+|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999999776
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.97 E-value=0.011 Score=54.57 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
++.|+++||.= .+.......+...+.........|.++++.+.+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~ 153 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 153 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhch
Confidence 67899999973 3344445556666766666678888988887653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.013 Score=51.59 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997763
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.01 Score=52.19 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999986653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.92 E-value=0.02 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
...+.|.||+|+||||+++.|+..+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.91 E-value=0.011 Score=54.78 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l 390 (597)
+-+.||+|+||||+++++++-
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999974
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.91 E-value=0.0092 Score=58.58 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.-+|||.|+.|+|||||+.-|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998643
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=0.012 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l 390 (597)
+.|.||+|+||||+++++++-
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999983
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.85 E-value=0.0091 Score=52.57 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=9.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|++||.+|+|||||++-+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986664
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.83 E-value=0.014 Score=51.06 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
++++||.+|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999665
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.014 Score=51.01 Aligned_cols=21 Identities=43% Similarity=0.820 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|.+||++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998774
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.77 E-value=0.014 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|||+|+.+||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999874
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.014 Score=51.43 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|.+|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.71 E-value=0.016 Score=59.34 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
+-|.+|||||||||-|++.|+++.+ | -+.+|+.... +.|||-.|.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 4688999999999999999999652 2 3444444332 466666664
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.016 Score=50.71 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999887
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.71 E-value=0.021 Score=50.31 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=22.7
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
++-.-.|.=|.|.|+||+||||++-.+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3445578899999999999999986654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.70 E-value=0.015 Score=50.89 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|.++|.+|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.015 Score=52.13 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|+|+|+.|+|||||++-+.
T Consensus 8 KivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 38999999999999999776
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.67 E-value=0.012 Score=56.44 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=28.8
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++-+ +.|-+|++++|+|++|+|||||+.-|.+-
T Consensus 33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeec-ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 44433 57899999999999999999999999874
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.63 E-value=0.015 Score=54.01 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~ 388 (597)
..|||.|+-||||||+++.|.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999995
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.016 Score=50.76 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.+||.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999997764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.017 Score=50.48 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
++++||++|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 59999999999999999665
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.48 E-value=0.019 Score=50.00 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=25.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..+||..|++.|+=||||||+++-+++-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence 4578999999999999999999999863
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.41 E-value=0.016 Score=50.82 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|.++|++|+|||||++-+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.02 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|++||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999876
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.02 Score=50.91 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|+|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998766
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.22 E-value=0.017 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..+.+.||+|||||++++.|+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 4688999999999999999986
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.99 E-value=0.024 Score=50.21 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|.++|.+|+|||||++-++
T Consensus 4 KivliG~~~vGKTsli~r~~ 23 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFA 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998665
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.87 E-value=0.022 Score=52.28 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+..++|+||+-. +.......+...+.........+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 367999999874 44455666677777776777888888887665
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.82 E-value=0.026 Score=50.36 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc--c-cCCc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL--A-EVEG 395 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l--~-~~~G 395 (597)
++.++|.+|+|||||++-+.-. + |+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 6899999999999999988322 2 4557
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.79 E-value=0.026 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.-+.+.||+|+|||+|++.|++-
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 34789999999999999999973
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.023 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
+.|+|-|.-||||||++++|...++
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5799999999999999999986443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.026 Score=49.86 Aligned_cols=21 Identities=38% Similarity=0.756 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.70 E-value=0.026 Score=54.24 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh
Q psy1502 477 VGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~ 538 (597)
..+.+-.++++..+.++. |+..+.++..+-......+.+.+... ..+|++++++ ...+..
T Consensus 146 ~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~-~~r~i~Vltk-~D~~~~ 207 (299)
T d2akab1 146 DIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ-GQRTIGVITK-LDLMDE 207 (299)
T ss_dssp THHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT-CSSEEEEEEC-GGGSCT
T ss_pred hHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC-CCceeeEEec-cccccc
Confidence 333445588999999997 44566666655554434444444332 3589988875 444443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.70 E-value=0.049 Score=51.70 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=47.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCce-EEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGV-IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY 440 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~-I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~ 440 (597)
=+|.|..+-|.||+|||||||+--++.-. ...|. |+||... .++++.+ +++|+= -+|+.+.+..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~GvD-----------~d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGVD-----------TDSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTCC-----------GGGCEEECCS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH-HHhCCC-----------HHHeEEecCC
Confidence 58999999999999999999987777654 23444 5677665 3455544 344531 1465544444
Q ss_pred ChHHHHHHH
Q psy1502 441 PDYVLWTAL 449 (597)
Q Consensus 441 ~~e~i~~a~ 449 (597)
+-|++.+.+
T Consensus 122 ~~E~~~~~~ 130 (269)
T d1mo6a1 122 TGEQALEIA 130 (269)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 556655443
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.026 Score=50.40 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
+|+++|++|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.028 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=..|+|+||.++|||||+|.|.|-
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999974
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.57 E-value=0.029 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..-+-+.||+|+|||++++.+++.
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHHH
Confidence 344889999999999999999874
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.40 E-value=0.029 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|||||.+-+|||||++.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999875
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.32 E-value=0.03 Score=54.01 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q psy1502 479 QRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531 (597)
Q Consensus 479 QrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaH 531 (597)
+.+--.+++..+++|+ |+....++..........+.+.+... ..+|++++++
T Consensus 154 ~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC-CCeEEEEEec
Confidence 4456688888898887 66677777777666666665555432 3588888886
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.28 E-value=0.032 Score=50.08 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
|||+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999998854
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.04 Score=53.58 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDT 404 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di 404 (597)
...+.++||||+|||.|++.|++... .--|.+|....
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~-~~~i~~d~s~~ 88 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEY 88 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGC
T ss_pred ceEEEEECCCcchhHHHHHHHHhhcc-CCeeEeccccc
Confidence 33578999999999999999998653 12555554443
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.00 E-value=0.033 Score=55.34 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=26.3
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+|++..+.++||+|+||||+++.|+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45888999999999999999999999865
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.95 E-value=0.08 Score=50.10 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCc-eEEEcceeCCCCChHHHhcCcEE
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG-VIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G-~I~idg~di~~~~~~~lr~~I~~ 418 (597)
=+|.|..+-|.||+|||||||+..++.-.. ..| .++||... .++++ +.+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCC
Confidence 479999999999999999999988877543 333 56777663 45555 3445564
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.67 E-value=0.037 Score=53.27 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+=++||||.+.||||||++.|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 346999999999999999999863
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.31 E-value=0.046 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|||+|+.++|||||++.|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999754
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.17 E-value=0.051 Score=49.79 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc--cccCCc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR--LAEVEG 395 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~--l~~~~G 395 (597)
-+|.++|.+|+|||||++-+.. +.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 3789999999999999997753 235545
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.11 E-value=0.065 Score=47.10 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc-ccCCc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL-AEVEG 395 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l-~~~~G 395 (597)
++.++|.+|+|||||++-+..- .|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 6899999999999999876543 35555
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.06 E-value=0.048 Score=51.82 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=25.4
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.+-+||+++|.|++|+|||||+.-+.+
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 6789999999999999999999877765
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.87 E-value=0.035 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.++||+|+||||+++.++.-.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999743
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.71 E-value=0.077 Score=47.80 Aligned_cols=44 Identities=5% Similarity=0.163 Sum_probs=36.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+.+|+|+|||= .|..++.+.+.+.|++-.++...|++|++.+.+
T Consensus 79 ~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 79 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEEeCcc-ccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 45899999964 578888889999999876778889999997754
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.59 E-value=0.06 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
...++|+|..|.|||||++-+.+
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.37 E-value=0.096 Score=51.15 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEE
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIK 398 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~ 398 (597)
+|.|=|+-||||||+++.|..-+...+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~ 37 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTL 37 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeE
Confidence 578899999999999999998665444443
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=90.21 E-value=0.17 Score=47.68 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=38.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
..++-..+.+.||.++||||++++|+.+...-|.+ ++ .-+...+..+...--.+-+|+
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~~~~--~~-~~~~f~l~~l~~k~~~~~~e~ 157 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCV--NW-TNENFPFNDCVDKMVIWWEEG 157 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEEC--CT-TCSSCTTGGGSSCSEEEECSC
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhcchhhc--cc-cCCCccccccCCCEEEEEeCC
Confidence 45788899999999999999999999987433422 22 123344555554444444554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.14 E-value=0.066 Score=50.90 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=++||||-.-+|||||++.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999953
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.82 E-value=0.083 Score=47.62 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|||+|.-.+|||||++.|++..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 58999999999999999998754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.72 E-value=0.086 Score=51.14 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc-cc-CCceEEEcceeCC
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL-AE-VEGVIKIDDIDTE 405 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l-~~-~~G~I~idg~di~ 405 (597)
..+.++||||+|||.+++.|... +. ...-+.+|.....
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~ 93 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 93 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 35778999999999999999984 43 3455667654443
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.60 E-value=0.1 Score=50.85 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
-+|+|=|+-||||||+++.|...+...|
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~~~~ 32 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred eEEEEECCcCCCHHHHHHHHHHHhCCCC
Confidence 3589999999999999999987554334
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.59 E-value=0.064 Score=51.01 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=27.5
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++.+ +.|-+|++++|+|++|+|||+|+..+..-
T Consensus 57 ~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 57 AIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred EEecc-ccccCCceEeeccCCCCChHHHHHHHHhh
Confidence 44433 57889999999999999999999865543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.54 E-value=0.082 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999998864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.78 E-value=0.089 Score=52.12 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
|++. +-++||||+|||-|++.|+.+.+ ..-|.+|-
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~-~~~ir~D~ 101 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD-IPIAISDA 101 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEG
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhcc-cceeehhh
Confidence 3343 66789999999999999998652 22344443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.65 E-value=0.1 Score=47.56 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=30.5
Q ss_pred ccCCCEEEeecCCCC-CCHHHHHHHHHHHHHhcC-CcEEEEeccC
Q psy1502 490 VRNNVILVLDEATAN-VDPKTDLLIQRTIRKKFA-DCTVLTIAHR 532 (597)
Q Consensus 490 l~~p~ILILDEaTSa-LD~~te~~I~~~l~~~~~-~~TvI~IaHr 532 (597)
+++.++|++||.=.- -+..+|..+...+..... ++.+|+.+.+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 668999999998543 357788888888887664 5555554444
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.34 E-value=0.056 Score=52.71 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEV 393 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~ 393 (597)
.|.-+.|+|+.|+|||||++.+.++.|+
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 3456899999999999999999987653
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.33 E-value=0.098 Score=43.52 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~ 520 (597)
+..+++-+++|+||+= .+|..+...+...++..
T Consensus 89 ~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 89 GCSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp GGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred chhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 3456788999999995 46888877776666544
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.30 E-value=0.054 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=18.4
Q ss_pred EcCCcEEEEEcCCCCCHHHHH
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLI 384 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~ 384 (597)
+++|+.+-|++|+|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999665
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.01 E-value=0.11 Score=52.35 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=24.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI 536 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti 536 (597)
.+++||+-.-...+. +.+.+.+.+ .+..++++++.++-+
T Consensus 279 ~l~lDE~~~~~~~~~---l~~~l~~~Rk~Gv~~~l~~Qs~~ql 318 (433)
T d1e9ra_ 279 WLFIDELASLEKLAS---LADALTKGRKAGLRVVAGLQSTSQL 318 (433)
T ss_dssp EEEESCGGGSCBCSS---HHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred EEEechHhhhcccHH---HHHHHHHhCCCCceEEEEeccHHHH
Confidence 577899876554322 223343333 377899999997776
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.76 E-value=0.079 Score=50.33 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=17.5
Q ss_pred EcCCcEEEEEcCCCCCHHH
Q psy1502 364 IHPKEKIGIVGRTGAGKSS 382 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKST 382 (597)
+.+|+.+.+.+|||||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 5689999999999999997
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.23 E-value=0.16 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.-+.+||++|.|||+++.-|++.
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHH
Confidence 35789999999999999999863
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.18 E-value=0.16 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..-+.+||++|+|||+|+.-+.+.
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999999999864
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.90 E-value=0.14 Score=49.90 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|+|=|+-||||||+++.|...+...|
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g 33 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITP 33 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 589999999999999999998665443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.60 E-value=0.11 Score=49.57 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.4
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
=+.+-+|++++|+|++|+|||||+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3688999999999999999999986554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.74 E-value=0.21 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+-++++||.+-+|||||+|.|.|-.
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEEecCccchhhhhhhhhccc
Confidence 4469999999999999999999864
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=85.39 E-value=0.15 Score=45.75 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=28.0
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCceE
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I 397 (597)
+|+...+.++||.++|||+++..|+.+. .|.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l--~G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI--QGAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH--TCEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHh--CCEE
Confidence 5999999999999999999999999875 3544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=0.19 Score=45.88 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc---------CCceEEEcceeCC
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE---------VEGVIKIDDIDTE 405 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~---------~~G~I~idg~di~ 405 (597)
.+.|.|.=|||||||++-+++-.+ +-|++-+|+..+.
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~ 50 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 50 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred EEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhhhc
Confidence 467899999999999998876321 1366666665544
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.32 E-value=0.28 Score=40.17 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=29.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh-ccccCCc--eEE-EcceeC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEG--VIK-IDDIDT 404 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~-~l~~~~G--~I~-idg~di 404 (597)
++|=+|-+.|-||||||||++.|. .|...+| .|+ +||.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence 457788999999999999999886 5665433 454 455543
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.27 E-value=0.2 Score=48.39 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
...++| .+.++||+|+|||.|++.|.+-
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 344444 4556899999999999999874
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=84.04 E-value=0.27 Score=44.93 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy1502 370 IGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~ 389 (597)
++++|.-.+|||||++.|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999853
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.89 E-value=0.25 Score=45.05 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHHHHHccCCCEEE----eecCCCCCCHHHHHHHHHHHHH
Q psy1502 482 LICLARAIVRNNVILV----LDEATANVDPKTDLLIQRTIRK 519 (597)
Q Consensus 482 RIaIARAll~~p~ILI----LDEaTSaLD~~te~~I~~~l~~ 519 (597)
.+.+|+++ ..+++++ +|.....-|.+.-..+.+.+..
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~ 172 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK 172 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHh
Confidence 57777776 5566666 7988877787665555555544
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.64 E-value=0.25 Score=44.19 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|||+|.-++|||||++-|++.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999864
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.13 E-value=0.2 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=18.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
.|+-+.+++|||+|||+..-+..
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHH
Confidence 58888999999999998654443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.88 E-value=0.15 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHH
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIA 385 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~ 385 (597)
..|+.+.+++|||||||+.+-
T Consensus 38 ~~~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHHH
Confidence 357778899999999998754
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.42 E-value=0.35 Score=42.59 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhccc--cCCceEEE
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRLA--EVEGVIKI 399 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~i 399 (597)
+-+++|||||||.+.-+++... ...|.+.+
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~ 57 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLM 57 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEE
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEE
Confidence 5588999999998766666543 23455544
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.15 E-value=0.26 Score=48.02 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy1502 370 IGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~ 388 (597)
|||+|+.|+|||||+..|+
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999986
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.04 E-value=0.41 Score=44.12 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~ 388 (597)
-++++|..++|||||+.-|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998875
|