Psyllid ID: psy15037

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MNEGEDGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGVSSGME
Secondary Structure (PSIPRED)
cccccccccEEEEccccEEEEccccccccccccccccccccccccccccccccccHHcHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccEEEEEEccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccEEEccccccccccccccccccEEEccccccccEEEEcEEEEHHHHHccccccccccccccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccccccccEEccccEEEEEcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mnegedgckrigctecgfvfckdclqgahigpcdpgrtsmdqggastsdyavdptrasqdclqgahigpcdpertsmdqggastsdyavdptrasqarwddasqvtikvstkpcpscrtateragkgvyaydlypmFIPLVLGVSSGME
Flexible Loop (DISEMBL)
mnegedgckriGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRasqarwddasqvtikvstkpcpscrtateragkgvyayDLYPMFIPLVLGVSSGME
Low Complexity Region (SEG)
MNEGEDGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGVSSGME
Disordered region (IsUnstruct)
*******CKRIGCTECGFVFCKDCLQGAHIGPC************************************************************************TIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGV*****
Disordered Region (DISOPRED)
***********GCTECGFVFCKDCLQGAHIGPCD*************SDYAVDPTRASQDCLQGAHIGPC**********************************VTIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGVSSG**
Disordered Region (DISEMBL)
MNEGEDGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRT*********SDYAVDPTRASQDCLQGAHIGPCDPE************DYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGVSSGME
Disordered Region (DISPRO)
*****DGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPE*************YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNEGEDGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYPMFIPLVLGVSSGME
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9JK66	465	E3 ubiquitin-protein liga	yes	N/A	0.429	0.137	0.432	7e-09
Q9WVS6	464	E3 ubiquitin-protein liga	yes	N/A	0.429	0.137	0.432	8e-09
O60260	465	E3 ubiquitin-protein liga	no	N/A	0.429	0.137	0.402	4e-07

>sp|Q9JK66|PRKN2_RAT E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus GN=Park2 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           +DC +  H G CD   +  +  GA++  Y VD   A QARW++AS+ TIK +TKPCP C 
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422

Query: 119 TATERAG 125
              E+ G
Sbjct: 423 VPIEKNG 429

Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins, such as BCL2, SYT11, CCNE1, GPR37, STUB1, a 22 kDa O-linked glycosylated isoform of SNCAIP, SEPT5, ZNF746 and AIMP2. Mediates monoubiquitination as well as 'Lys-48'-linked and 'Lys-63'-linked polyubiquitination of substrates depending on the context. Participates in the removal and/or detoxification of abnormally folded or damaged protein by mediating 'Lys-63'-linked polyubiquitination of misfolded proteins such as PARK7: 'Lys-63'-linked polyubiquitinated misfolded proteins are then recognized by HDAC6, leading to their recruitment to aggresomes, followed by degradation. Mediates 'Lys-63'-linked polyubiquitination of SNCAIP, possibly playing a role in Lewy-body formation. Mediates monoubiquitination of BCL2, thereby acting as a positive regulator of autophagy. Promotes the autophagic degradation of dysfunctional depolarized mitochondria. Mediates 'Lys-48'-linked polyubiquitination of ZNF746, followed by degradation of ZNF746 by the proteasome; possibly playing a role in role in regulation of neuron death. Limits the production of reactive oxygen species (ROS). Loss of this ubiquitin ligase activity appears to be the mechanism underlying pathogenesis of PARK2. May protect neurons against alpha synuclein toxicity, proteasomal dysfunction, GPR37 accumulation, and kainate-induced excitotoxicity. May play a role in controlling neurotransmitter trafficking at the presynaptic terminal and in calcium-dependent exocytosis. Regulates cyclin-E during neuronal apoptosis. May represent a tumor suppressor gene.
Rattus norvegicus (taxid: 10116)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9WVS6|PRKN2_MOUSE E3 ubiquitin-protein ligase parkin OS=Mus musculus GN=Park2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           +DC +  H G CD   + ++  GA++  Y VD   A QARW++AS+ TIK +TKPCP C 
Sbjct: 365 RDCKEAYHEGDCD---SLLEPSGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPRCN 421

Query: 119 TATERAG 125
              E+ G
Sbjct: 422 VPIEKNG 428

Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins, such as BCL2, SYT11, CCNE1, GPR37, STUB1, a 22 kDa O-linked glycosylated isoform of SNCAIP, SEPT5, ZNF746 and AIMP2. Mediates monoubiquitination as well as 'Lys-48'-linked and 'Lys-63'-linked polyubiquitination of substrates depending on the context. Participates in the removal and/or detoxification of abnormally folded or damaged protein by mediating 'Lys-63'-linked polyubiquitination of misfolded proteins such as PARK7: 'Lys-63'-linked polyubiquitinated misfolded proteins are then recognized by HDAC6, leading to their recruitment to aggresomes, followed by degradation. Mediates 'Lys-63'-linked polyubiquitination of SNCAIP, possibly playing a role in Lewy-body formation. Mediates monoubiquitination of BCL2, thereby acting as a positive regulator of autophagy. Promotes the autophagic degradation of dysfunctional depolarized mitochondria. Mediates 'Lys-48'-linked polyubiquitination of ZNF746, followed by degradation of ZNF746 by the proteasome; possibly playing a role in role in regulation of neuron death. Limits the production of reactive oxygen species (ROS). Loss of this ubiquitin ligase activity appears to be the mechanism underlying pathogenesis of PARK2. May protect neurons against alpha synuclein toxicity, proteasomal dysfunction, GPR37 accumulation, and kainate-induced excitotoxicity. May play a role in controlling neurotransmitter trafficking at the presynaptic terminal and in calcium-dependent exocytosis. Regulates cyclin-E during neuronal apoptosis. May represent a tumor suppressor gene.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O60260|PRKN2_HUMAN E3 ubiquitin-protein ligase parkin OS=Homo sapiens GN=PARK2 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++C +  H G C       +  G +T  Y VD   A QARW+ AS+ TIK +TKPCP C 
Sbjct: 366 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422

Query: 119 TATERAG 125
              E+ G
Sbjct: 423 VPVEKNG 429

Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins, such as BCL2, SYT11, CCNE1, GPR37, STUB1, a 22 kDa O-linked glycosylated isoform of SNCAIP, SEPT5, ZNF746 and AIMP2. Mediates monoubiquitination as well as 'Lys-48'-linked and 'Lys-63'-linked polyubiquitination of substrates depending on the context. Participates in the removal and/or detoxification of abnormally folded or damaged protein by mediating 'Lys-63'-linked polyubiquitination of misfolded proteins such as PARK7: 'Lys-63'-linked polyubiquitinated misfolded proteins are then recognized by HDAC6, leading to their recruitment to aggresomes, followed by degradation. Mediates 'Lys-63'-linked polyubiquitination of SNCAIP, possibly playing a role in Lewy-body formation. Mediates monoubiquitination of BCL2, thereby acting as a positive regulator of autophagy. Promotes the autophagic degradation of dysfunctional depolarized mitochondria. Mediates 'Lys-48'-linked polyubiquitination of ZNF746, followed by degradation of ZNF746 by the proteasome; possibly playing a role in role in regulation of neuron death. Limits the production of reactive oxygen species (ROS). Loss of this ubiquitin ligase activity appears to be the mechanism underlying pathogenesis of PARK2. May protect neurons against alpha synuclein toxicity, proteasomal dysfunction, GPR37 accumulation, and kainate-induced excitotoxicity. May play a role in controlling neurotransmitter trafficking at the presynaptic terminal and in calcium-dependent exocytosis. Regulates cyclin-E during neuronal apoptosis. May represent a tumor suppressor gene.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
195495676	548	GE22356 [Drosophila yakuba] gi|194181469	0.785	0.213	0.405	2e-21
195126605	464	GI12208 [Drosophila mojavensis] gi|19391	0.429	0.137	0.661	1e-15
289742101	471	E3 ubiquitin protein ligase [Glossina mo	0.436	0.138	0.597	5e-15
16198297	482	SD01679p [Drosophila melanogaster]	0.436	0.134	0.611	7e-15
195592060	482	GD12138 [Drosophila simulans] gi|1941977	0.436	0.134	0.611	7e-15
24667880	482	parkin, isoform B [Drosophila melanogast	0.436	0.134	0.611	7e-15
195348457	468	GM22162 [Drosophila sechellia] gi|194122	0.436	0.138	0.611	9e-15
28864541	162	PARKIN, partial [Drosophila melanogaster	0.436	0.401	0.611	1e-14
194875358	468	GG13257 [Drosophila erecta] gi|190655367	0.436	0.138	0.597	2e-14
391336215	483	PREDICTED: E3 ubiquitin-protein ligase p	0.644	0.198	0.361	3e-14

>gi|195495676|ref|XP_002095368.1| GE22356 [Drosophila yakuba] gi|194181469|gb|EDW95080.1| GE22356 [Drosophila yakuba]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 81/153 (52%), Gaps = 36/153 (23%)

Query: 5   EDGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPT-------- 55
           E  C+++ C   CG+VFC++CLQG HIG C P  T+      +  +Y VDP         
Sbjct: 365 EPDCRKVTCQNGCGYVFCRNCLQGYHIGECLPEGTATS--AQNYGEYTVDPQCGVLCPQP 422

Query: 56  -----------------------RASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPT 92
                                     ++CLQG HIG C PE T+      ++ +Y VDP 
Sbjct: 423 GCGMGLLVEPDCRKVTCQNGCGYVFCRNCLQGYHIGECLPEGTATS--AQNSCEYTVDPN 480

Query: 93  RASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
           RA++ARW++AS VTIKVSTKPCP CRT TER G
Sbjct: 481 RAAEARWEEASNVTIKVSTKPCPKCRTPTERDG 513

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126605|ref|XP_002007761.1| GI12208 [Drosophila mojavensis] gi|193919370|gb|EDW18237.1| GI12208 [Drosophila mojavensis]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 52/68 (76%), Gaps = 4/68 (5%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTS-DYAVDPTRASQARWDDASQVTIKVSTKPCPSC 117
           ++CLQG HIG C PE TS   G AS S +Y VDP RA++ARW++AS VTIKVSTKPCP C
Sbjct: 365 RNCLQGYHIGECLPEGTS---GAASNSCEYTVDPNRAAEARWEEASNVTIKVSTKPCPKC 421

Query: 118 RTATERAG 125
           RT TER G
Sbjct: 422 RTPTERDG 429

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742101|gb|ADD19798.1| E3 ubiquitin protein ligase [Glossina morsitans morsitans]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG H+G C P+  S++ G  S+ +Y+VDP RA++ARWD+AS V IKV TKPCP CR
Sbjct: 372 RNCLQGYHLGDCLPD--SVNDGDPSSCEYSVDPNRAAEARWDEASNVAIKVLTKPCPKCR 429

Query: 119 TATERAG 125
           TATER G
Sbjct: 430 TATERDG 436

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16198297|gb|AAL13983.1| SD01679p [Drosophila melanogaster]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG HIG C PE T       ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 383 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440

Query: 119 TATERAG 125
           T TER G
Sbjct: 441 TPTERDG 447

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195592060|ref|XP_002085754.1| GD12138 [Drosophila simulans] gi|194197763|gb|EDX11339.1| GD12138 [Drosophila simulans]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG HIG C PE T       ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 383 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440

Query: 119 TATERAG 125
           T TER G
Sbjct: 441 TPTERDG 447

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667880|ref|NP_730600.1| parkin, isoform B [Drosophila melanogaster] gi|24667884|ref|NP_730601.1| parkin, isoform C [Drosophila melanogaster] gi|21217495|gb|AAM43930.1|AF510072_1 PARKIN [Drosophila melanogaster] gi|20912875|gb|AAM18800.2| PARKIN [Drosophila melanogaster] gi|23094208|gb|AAN12154.1| parkin, isoform B [Drosophila melanogaster] gi|23094209|gb|AAN12155.1| parkin, isoform C [Drosophila melanogaster] gi|202028284|gb|ACH95278.1| FI05213p [Drosophila melanogaster]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG HIG C PE T       ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 383 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440

Query: 119 TATERAG 125
           T TER G
Sbjct: 441 TPTERDG 447

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348457|ref|XP_002040765.1| GM22162 [Drosophila sechellia] gi|194122275|gb|EDW44318.1| GM22162 [Drosophila sechellia]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG HIG C PE T       ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 369 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 426

Query: 119 TATERAG 125
           T TER G
Sbjct: 427 TPTERDG 433

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28864541|gb|AAO48768.1| PARKIN, partial [Drosophila melanogaster]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG HIG C PE T       ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 63  RNCLQGYHIGECLPEGTGAS--ATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 120

Query: 119 TATERAG 125
           T TER G
Sbjct: 121 TPTERDG 127

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194875358|ref|XP_001973584.1| GG13257 [Drosophila erecta] gi|190655367|gb|EDV52610.1| GG13257 [Drosophila erecta]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 59  QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
           ++CLQG HIG C PE T       ++ +Y VDP RA++ARW++AS VTIKVSTKPCP CR
Sbjct: 369 RNCLQGYHIGECLPEGTGA--SAQNSCEYTVDPNRAAEARWEEASNVTIKVSTKPCPKCR 426

Query: 119 TATERAG 125
           T TER G
Sbjct: 427 TPTERDG 433

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391336215|ref|XP_003742477.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Metaseiulus occidentalis]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 34/130 (26%)

Query: 1   MNEGEDGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPT 55
           ++E    C ++ C+      CGFVFC+DCLQGAHIGPC                      
Sbjct: 350 LDETLSKCNKVTCSRIEGQGCGFVFCRDCLQGAHIGPC---------------------- 387

Query: 56  RASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCP 115
                  Q   +   D       +  A  + + VD  RAS++RWD +S++TIK +TKPCP
Sbjct: 388 -------QEEDVAERDLTLAMQREDTAGGTLFMVDEDRASRSRWDKSSRITIKGTTKPCP 440

Query: 116 SCRTATERAG 125
            CRT TER+G
Sbjct: 441 KCRTPTERSG 450

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0041100	482	park "parkin" [Drosophila mela	0.436	0.134	0.611	2e-17
UNIPROTKB|G3MY23	521	PARK2 "Uncharacterized protein	0.436	0.124	0.397	4.8e-11
UNIPROTKB|F1NWU0	461	PARK2 "Uncharacterized protein	0.429	0.138	0.402	1.7e-10
UNIPROTKB|J9NXQ6	139	J9NXQ6 "Uncharacterized protei	0.429	0.460	0.432	2.5e-10
MGI|MGI:1355296	464	Park2 "Parkinson disease (auto	0.429	0.137	0.432	2.7e-10
ZFIN|ZDB-GENE-050417-109	458	park2 "Parkinson disease (auto	0.436	0.141	0.432	2.8e-10
RGD|61797	465	Park2 "parkinson protein 2, E3	0.429	0.137	0.432	3.5e-10
UNIPROTKB|I3LF80	139	I3LF80 "Uncharacterized protei	0.677	0.726	0.345	6.6e-10
UNIPROTKB|G3N0A5	165	PARK2 "Uncharacterized protein	0.436	0.393	0.397	2.2e-09
UNIPROTKB|G3N0R1	488	PARK2 "Uncharacterized protein	0.731	0.223	0.322	5.9e-09

FB|FBgn0041100 park "parkin" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 41/67 (61%), Positives = 49/67 (73%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             ++CLQG HIG C PE T       ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct:   383 RNCLQGYHIGECLPEGTGAS--ATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440

Query:   119 TATERAG 125
             T TER G
Sbjct:   441 TPTERDG 447

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0005829 "cytosol" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0000266 "mitochondrial fission" evidence=IGI

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0010821 "regulation of mitochondrion organization" evidence=IMP

GO:1900407 "regulation of cellular response to oxidative stress" evidence=IDA

GO:0048477 "oogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3MY23 PARK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             +DC +  H G C      ++  G  T  Y V+   A QARW++AS+ TIK +TKPCP C 
Sbjct:   394 RDCKEPYHEGDCG---AVIEASGTVTQAYRVNEKAAEQARWEEASKETIKKTTKPCPRCH 450

Query:   119 TATERAGK 126
                E+ G+
Sbjct:   451 VPVEKNGE 458

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070997 "neuron death" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032232 "negative regulation of actin filament bundle assembly" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010506 "regulation of autophagy" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NWU0 PARK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             ++C +  H G C    + +   GA    Y VD   A QARW++AS+ TIK +TKPCP+C 
Sbjct:   363 RECKEEYHEGECS---SFLSTQGAVAQGYVVDENAAMQARWEEASKETIKKTTKPCPNCH 419

Query:   119 TATERAG 125
                E+ G
Sbjct:   420 IPVEKNG 426

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0010506 "regulation of autophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0032232 "negative regulation of actin filament bundle assembly" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070997 "neuron death" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|J9NXQ6 J9NXQ6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/67 (43%), Positives = 38/67 (56%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             ++C +  H G C    T  +  GA T  Y VD   A QARW++AS+ TIK +TKPCP C 
Sbjct:    40 RECKEEYHEGECS---TLFEASGAVTQAYKVDEKAAEQARWEEASKETIKKTTKPCPRCH 96

Query:   119 TATERAG 125
                E+ G
Sbjct:    97 VPVEKNG 103

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:1355296 Park2 "Parkinson disease (autosomal recessive, juvenile) 2, parkin" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             +DC +  H G CD   + ++  GA++  Y VD   A QARW++AS+ TIK +TKPCP C 
Sbjct:   365 RDCKEAYHEGDCD---SLLEPSGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPRCN 421

Query:   119 TATERAG 125
                E+ G
Sbjct:   422 VPIEKNG 428

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000422 "mitochondrion degradation" evidence=ISO

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0001963 "synaptic transmission, dopaminergic" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006914 "autophagy" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=ISO

GO:0007612 "learning" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008219 "cell death" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016235 "aggresome" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IMP

GO:0019900 "kinase binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032232 "negative regulation of actin filament bundle assembly" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0035249 "synaptic transmission, glutamatergic" evidence=IMP

GO:0042415 "norepinephrine metabolic process" evidence=IMP

GO:0042417 "dopamine metabolic process" evidence=IMP

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IDA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046928 "regulation of neurotransmitter secretion" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050804 "regulation of synaptic transmission" evidence=IMP

GO:0051087 "chaperone binding" evidence=ISO

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0060548 "negative regulation of cell death" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070842 "aggresome assembly" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

GO:0070997 "neuron death" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=ISO

ZFIN|ZDB-GENE-050417-109 park2 "Parkinson disease (autosomal recessive, juvenile) 2, parkin" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 29/67 (43%), Positives = 36/67 (53%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             +DC +  H GPC    TS    GA    Y VD   A +ARW+ ASQ TI  +T PCP C+
Sbjct:   359 RDCKEEFHEGPCR-HTTSTASAGA-LQGYVVDEEAALRARWEQASQETITKTTHPCPKCQ 416

Query:   119 TATERAG 125
                E+ G
Sbjct:   417 VPVEKNG 423

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IMP

RGD|61797 Park2 "parkinson protein 2, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             +DC +  H G CD   +  +  GA++  Y VD   A QARW++AS+ TIK +TKPCP C 
Sbjct:   366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422

Query:   119 TATERAG 125
                E+ G
Sbjct:   423 VPIEKNG 429

GO:0000139 "Golgi membrane" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000422 "mitochondrion degradation" evidence=ISO

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0001963 "synaptic transmission, dopaminergic" evidence=ISO

GO:0001964 "startle response" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;TAS

GO:0006513 "protein monoubiquitination" evidence=ISO;ISS

GO:0006914 "autophagy" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IDA

GO:0007612 "learning" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008219 "cell death" evidence=ISO;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=ISO

GO:0010506 "regulation of autophagy" evidence=ISO;ISS

GO:0014069 "postsynaptic density" evidence=IDA

GO:0016235 "aggresome" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019538 "protein metabolic process" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032232 "negative regulation of actin filament bundle assembly" evidence=ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0035249 "synaptic transmission, glutamatergic" evidence=ISO

GO:0042415 "norepinephrine metabolic process" evidence=ISO

GO:0042417 "dopamine metabolic process" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042551 "neuron maturation" evidence=IEP

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046928 "regulation of neurotransmitter secretion" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050804 "regulation of synaptic transmission" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051412 "response to corticosterone stimulus" evidence=IEP

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0060548 "negative regulation of cell death" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070842 "aggresome assembly" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO;ISS

GO:0070997 "neuron death" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|I3LF80 I3LF80 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 38/110 (34%), Positives = 52/110 (47%)

Query:    17 GFVFCKDCLQGAHIGPCDPGRTSMD-QGGASTSDYAVDPTRASQDCLQGAHIGPCDPERT 75
             G V C     GA + P +PG+  +  +GG S     V      +DC +  H G C     
Sbjct:     2 GGVLCPSPGCGAGLLP-EPGQRKVTCEGGNSLGCGLV----FCRDCKESYHEGECS---A 53

Query:    76 SMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
               +   A    Y VD   A QARW++AS+ TI+ +TKPCP C    E+ G
Sbjct:    54 LFEASAAVAQAYRVDQKAAEQARWEEASKETIRKTTKPCPRCHVPVEKNG 103

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|G3N0A5 PARK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query:    59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
             +DC +  H G C      ++  G  T  Y V+   A QARW++AS+ TIK +TKPCP C 
Sbjct:    38 RDCKEPYHEGDCG---AVIEASGTVTQAYRVNEKAAEQARWEEASKETIKKTTKPCPRCH 94

Query:   119 TATERAGK 126
                E+ G+
Sbjct:    95 VPVEKNGE 102

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|G3N0R1 PARK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 40/124 (32%), Positives = 58/124 (46%)

Query:     9 KRIGCTEC----GFVFCKDCLQGAHIGPCDPG--RTSMDQGGASTSDYAVDPTRASQDCL 62
             ++ G  EC    G V C     GA + P +PG  + S + G      +        +DC 
Sbjct:   311 QQYGAEECVLQLGGVLCPGPGCGAGLLP-EPGQRKVSCEPGHGLGCGFVF-----CRDCK 364

Query:    63 QGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATE 122
             +  H G C      ++  G  T  Y V+   A QARW++AS+ TIK +TKPCP C    E
Sbjct:   365 EPYHEGDCG---AVIEASGTVTQAYRVNEKAAEQARWEEASKETIKKTTKPCPRCHVPVE 421

Query:   123 RAGK 126
             + G+
Sbjct:   422 KNGE 425

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG0006|consensus	446		99.88
KOG1814|consensus	445		99.84
KOG1815|consensus	444		99.39
KOG1812|consensus	384		99.37
smart00647	64	IBR In Between Ring fingers. the domains occurs be	98.07
PF01485	64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	97.88
smart00647	64	IBR In Between Ring fingers. the domains occurs be	92.41
PF01485	64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	86.96

>KOG0006|consensus

Probab=99.88  E-value=2.8e-23  Score=180.90  Aligned_cols=92  Identities=43%  Similarity=0.803  Sum_probs=80.5

Q ss_pred             CCCCCCcccCCc-cCccccccccccccCCCCCCccccCcCCCCCCCcccCCcccccccccccCCCCCCCccccccccCCC
Q psy15037          4 GEDGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGA   82 (149)
Q Consensus         4 ~e~~~~~v~Cp~-C~~aFC~~Cke~WH~g~C~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~r~~m~~~~~   82 (149)
                      .||+.++++|++ |+|+||+.|++.||.+.|..--+      ++                                  +.
T Consensus       329 ~EPD~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~------as----------------------------------~t  368 (446)
T KOG0006|consen  329 PEPDQRKVTCEGGCGFAFCRECKEAYHEGECSAVFE------AS----------------------------------GT  368 (446)
T ss_pred             cCCCCCcccCCCCchhHhHHHHHhhhccccceeeec------cc----------------------------------cc
Confidence            589999999995 99999999999999999984332      11                                  12


Q ss_pred             CCCcccCChhHHhhhhhHHhhHHHHHhcCcCCCCCCcceeecCCcceeEeCCC
Q psy15037         83 STSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYP  135 (149)
Q Consensus        83 ~e~~Yg~d~~~~~~~~~e~~s~~~I~~ntK~CP~C~~~IEK~~GCNhM~~~~~  135 (149)
                      -+..|.+|++++.+++||++|..+|+++|||||+|++|+||||||+||.|--|
T Consensus       369 ~tc~y~vde~~a~~arwd~as~~TIk~tTkpCPkChvptErnGGCmHm~Ct~~  421 (446)
T KOG0006|consen  369 TTCAYRVDERAAEQARWDAASKETIKKTTKPCPKCHVPTERNGGCMHMKCTQP  421 (446)
T ss_pred             cceeeecChhhhhhhhhhhhhhhhhhhccCCCCCccCccccCCceEEeecCCC
Confidence            24568899999999999999999999999999999999999999999999765

>KOG1814|consensus

Probab=99.84  E-value=1.4e-22  Score=179.46  Aligned_cols=104  Identities=23%  Similarity=0.373  Sum_probs=81.0

Q ss_pred             CCCCCCCcccCCccCccccccccccccCC-CCCCccccCcCCCCCCCcccCCcccccccccccCCCCCCCccccccccCC
Q psy15037          3 EGEDGCKRIGCTECGFVFCKDCLQGAHIG-PCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGG   81 (149)
Q Consensus         3 ~~e~~~~~v~Cp~C~~aFC~~Cke~WH~g-~C~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~r~~m~~~~   81 (149)
                      ..||+..+++|.+|+|+||+.|+.+||+. +|....++      +...|        -+++++      +++|+     +
T Consensus       286 ~~d~~~~l~~CskCnFaFCtlCk~t~HG~s~Ck~~~~~------~~~l~--------~~~~~~------d~a~k-----~  340 (445)
T KOG1814|consen  286 KQDPGRALAICSKCNFAFCTLCKLTWHGVSPCKVKAEK------LIELY--------LEYLEA------DEARK-----R  340 (445)
T ss_pred             ccCchhhhhhhccCccHHHHHHHHhhcCCCcccCchHH------HHHHH--------HHHhhc------CHHHH-----H
Confidence            46889999999999999999999999985 79987541      11111        124443      23244     3


Q ss_pred             CCCCcccCChhHHhhh-hhHHhhHHHHHhcCcCCCCCCcceeecCCcceeEeCC
Q psy15037         82 ASTSDYAVDPTRASQA-RWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLY  134 (149)
Q Consensus        82 ~~e~~Yg~d~~~~~~~-~~e~~s~~~I~~ntK~CP~C~~~IEK~~GCNhM~~~~  134 (149)
                      .+++|||   +|+++. +.+..++.||..|+|+||+|.++|||++|||||+|..
T Consensus       341 ele~Ryg---~rvve~~vn~~lsekwl~~N~krCP~C~v~IEr~eGCnKM~C~~  391 (445)
T KOG1814|consen  341 ELEKRYG---KRVVEELVNDFLSEKWLESNSKRCPKCKVVIERSEGCNKMHCTK  391 (445)
T ss_pred             HHHHHhh---HHHHHHHHHHHHHHHHHHhcCCCCCcccceeecCCCccceeecc
Confidence            5678999   677764 4467889999999999999999999999999999974

>KOG1815|consensus

Probab=99.39  E-value=1.4e-13  Score=121.83  Aligned_cols=83  Identities=25%  Similarity=0.450  Sum_probs=61.8

Q ss_pred             CCCCcccCCccCccccccccccccCC-CCCCccccCcCCCCCCCcccCCcccccccccccCCCCCCCccccccccCCCCC
Q psy15037          6 DGCKRIGCTECGFVFCKDCLQGAHIG-PCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGAST   84 (149)
Q Consensus         6 ~~~~~v~Cp~C~~aFC~~Cke~WH~g-~C~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~r~~m~~~~~~e   84 (149)
                      .....|.|. |+..||+.|+..||.+ .|.....+                           ++++              
T Consensus       175 ~~~~~v~C~-~g~~FC~~C~~~~H~p~~C~~~~~w---------------------------l~k~--------------  212 (444)
T KOG1815|consen  175 LESVEVDCG-CGHEFCFACGEESHSPVSCPGAKKW---------------------------LKKC--------------  212 (444)
T ss_pred             CCccceeCC-CCchhHhhccccccCCCcccchHHH---------------------------HHhh--------------
Confidence            456678886 5569999999999987 69886541                           1111              


Q ss_pred             CcccCChhHHhhhhhHHhhHHHHHhcCcCCCCCCcceeecCCcceeEeCC----Cceeeeeec
Q psy15037         85 SDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLY----PMFIPLVLG  143 (149)
Q Consensus        85 ~~Yg~d~~~~~~~~~e~~s~~~I~~ntK~CP~C~~~IEK~~GCNhM~~~~----~~~~~~~~~  143 (149)
                                   ..+....+||..|||+||+|..+|||++|||||+|..    -.|..+-||
T Consensus       213 -------------~~~se~~~wi~~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~  262 (444)
T KOG1815|consen  213 -------------RDDSETINWILANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLA  262 (444)
T ss_pred             -------------hhhhhhhhhhhccCccCCCcccchhccCCccccccccCCcCCeeceeeec
Confidence                         1122344599999999999999999999999999984    456655443

>KOG1812|consensus

Probab=99.37  E-value=2.2e-13  Score=119.72  Aligned_cols=77  Identities=21%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             CCCCcccCCccCccccccccccccCC-CCCCccccCcCCCCCCCcccCCcccccccccccCCCCCCCccccccccCCCCC
Q psy15037          6 DGCKRIGCTECGFVFCKDCLQGAHIG-PCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGAST   84 (149)
Q Consensus         6 ~~~~~v~Cp~C~~aFC~~Cke~WH~g-~C~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~r~~m~~~~~~e   84 (149)
                      +......|+.|+..||..|+.+||.+ .|...++..                                           .
T Consensus       254 ~~~~~~~C~~C~~~fCv~C~~~wh~~~sC~eykk~~-------------------------------------------~  290 (384)
T KOG1812|consen  254 VKSKRRPCVKCHELFCVKCKVPWHANLSCEEYKKLN-------------------------------------------P  290 (384)
T ss_pred             hhhcccccccCCCceeecCCCcCCCCCCHHHHHHhC-------------------------------------------C
Confidence            55667789999999999999999976 688766410                                           0


Q ss_pred             CcccCChhHHhhhhhHHhhHHHHHhcCcCCCCCCcceeecCCcceeEeCCCc
Q psy15037         85 SDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGKGVYAYDLYPM  136 (149)
Q Consensus        85 ~~Yg~d~~~~~~~~~e~~s~~~I~~ntK~CP~C~~~IEK~~GCNhM~~~~~~  136 (149)
                      ..|           .+....+|+..+++.||+|+.-||+++|||||+|....
T Consensus       291 ~~~-----------~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~CrC~~  331 (384)
T KOG1812|consen  291 EEY-----------VDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCRCGH  331 (384)
T ss_pred             ccc-----------ccHHHHHHHHHhcCcCcccceeeeecCCcceEEeeccc
Confidence            011           13456778889999999999999999999999997654

>smart00647 IBR In Between Ring fingers

Probab=98.07  E-value=2.3e-06  Score=55.68  Aligned_cols=29  Identities=45%  Similarity=1.158  Sum_probs=25.4

Q ss_pred             CCCCCcccCCccCccccccccccccCC-CC
Q psy15037          5 EDGCKRIGCTECGFVFCKDCLQGAHIG-PC   33 (149)
Q Consensus         5 e~~~~~v~Cp~C~~aFC~~Cke~WH~g-~C   33 (149)
                      +++...+.|+.|++.||+.|+..||.+ .|
T Consensus        35 ~~~~~~v~C~~C~~~fC~~C~~~~H~~~~C   64 (64)
T smart00647       35 EEGCNRVTCPKCGFSFCFRCKVPWHSPVSC   64 (64)
T ss_pred             CCCCCeeECCCCCCeECCCCCCcCCCCCCC
Confidence            347789999999999999999999976 45

the domains occurs between pairs og RING fingers

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.88  E-value=5.7e-06  Score=53.64  Aligned_cols=22  Identities=36%  Similarity=0.827  Sum_probs=20.3

Q ss_pred             cccCCccCccccccccccccCC
Q psy15037         10 RIGCTECGFVFCKDCLQGAHIG   31 (149)
Q Consensus        10 ~v~Cp~C~~aFC~~Cke~WH~g   31 (149)
                      .++|+.|++.||+.|+..||.+
T Consensus        40 ~~~C~~C~~~fC~~C~~~~H~~   61 (64)
T PF01485_consen   40 IVTCPSCGTEFCFKCGEPWHEG   61 (64)
T ss_dssp             -CCTTSCCSEECSSSTSESCTT
T ss_pred             eeECCCCCCcCccccCcccCCC
Confidence            3999999999999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.

>smart00647 IBR In Between Ring fingers

Probab=92.41  E-value=0.22  Score=31.94  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=25.1

Q ss_pred             hHHHHHh--cCcCCC--CCCcceeecC--CcceeEeC
Q psy15037        103 SQVTIKV--STKPCP--SCRTATERAG--KGVYAYDL  133 (149)
Q Consensus       103 s~~~I~~--ntK~CP--~C~~~IEK~~--GCNhM~~~  133 (149)
                      .+.+|..  +.+.||  +|...|+...  |.++++|.
T Consensus         8 ~~~~i~~~~~~~~CP~~~C~~~~~~~~~~~~~~v~C~   44 (64)
T smart00647        8 LESYVESNPDLKWCPAPDCSAAIIVTEEEGCNRVTCP   44 (64)
T ss_pred             HHHHHhcCCCccCCCCCCCcceEEecCCCCCCeeECC
Confidence            4566665  688899  9999999975  89999983

the domains occurs between pairs og RING fingers

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.96  E-value=0.3  Score=31.17  Aligned_cols=26  Identities=15%  Similarity=0.188  Sum_probs=15.7

Q ss_pred             hcCcCCCC--CCcceeecCCcce--eEeCC
Q psy15037        109 VSTKPCPS--CRTATERAGKGVY--AYDLY  134 (149)
Q Consensus       109 ~ntK~CP~--C~~~IEK~~GCNh--M~~~~  134 (149)
                      .+.+.||+  |...|++..|.++  |+|..
T Consensus        16 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~   45 (64)
T PF01485_consen   16 PNIRWCPNPDCEYIIEKDDGCNSPIVTCPS   45 (64)
T ss_dssp             --CC--TTSST---ECS-SSTTS--CCTTS
T ss_pred             CCccCCCCCCCcccEEecCCCCCCeeECCC
Confidence            34579988  9999999999999  89873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
2jmo_A	80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	1e-06

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Length = 80

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 5  EDGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDP 35
          E   +++ C       CGF FC++C +  H G C  
Sbjct: 40 EPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
1wd2_A	60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	99.26
2jmo_A	80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	98.3
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	98.18
1wd2_A	60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	91.65
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	81.56

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.26  E-value=4.3e-13  Score=89.68  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             HHHhcCcCCCCCCcceeecCCcceeEeCC
Q psy15037        106 TIKVSTKPCPSCRTATERAGKGVYAYDLY  134 (149)
Q Consensus       106 ~I~~ntK~CP~C~~~IEK~~GCNhM~~~~  134 (149)
                      ||..+||+||+|+++|||++|||||+|..
T Consensus         1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~   29 (60)
T 1wd2_A            1 WIAANTKECPKCHVTIEKDGGCNHMVCRN   29 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCS
T ss_pred             CccccceECcCCCCeeEeCCCCCcEEECC
Confidence            68899999999999999999999999985

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}

Probab=98.30  E-value=2.5e-07  Score=64.03  Aligned_cols=32  Identities=34%  Similarity=0.994  Sum_probs=27.7

Q ss_pred             CCCCCcccCC-----ccCccccccccccccCCCCCCc
Q psy15037          5 EDGCKRIGCT-----ECGFVFCKDCLQGAHIGPCDPG   36 (149)
Q Consensus         5 e~~~~~v~Cp-----~C~~aFC~~Cke~WH~g~C~~~   36 (149)
                      +++.++++||     .|+++||+.|++.||..+|.+.
T Consensus        40 ~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~~~C~~~   76 (80)
T 2jmo_A           40 EPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAV   76 (80)
T ss_dssp             CSCTTSBCTTSSSTTCCSCCEETTTTEECCSSCSSSC
T ss_pred             CCCCCcCCCCCCCCCCCCCeeccccCccccCCccccc
Confidence            4567889999     9999999999999998569764

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=98.18  E-value=2.6e-07  Score=64.46  Aligned_cols=33  Identities=24%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             CCCCcccCCccCccccccccccc---cCC-CCCCccc
Q psy15037          6 DGCKRIGCTECGFVFCKDCLQGA---HIG-PCDPGRT   38 (149)
Q Consensus         6 ~~~~~v~Cp~C~~aFC~~Cke~W---H~g-~C~~~~~   38 (149)
                      ++..+++||.|++.||+.|+.+|   |.+ .|...+.
T Consensus        39 ~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~   75 (86)
T 2ct7_A           39 REQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN   75 (86)
T ss_dssp             CSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred             CCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence            45677999999999999999999   988 6988765

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=91.65  E-value=0.094  Score=34.31  Aligned_cols=27  Identities=33%  Similarity=0.792  Sum_probs=23.7

Q ss_pred             CCCCCCCcccCCc--cCcccccccccccc
Q psy15037          3 EGEDGCKRIGCTE--CGFVFCKDCLQGAH   29 (149)
Q Consensus         3 ~~e~~~~~v~Cp~--C~~aFC~~Cke~WH   29 (149)
                      +.+.+.+.+.|..  |++.||..|...|.
T Consensus        17 ek~~GCnhmtC~~~~C~~~FCw~C~~~~~   45 (60)
T 1wd2_A           17 EKDGGCNHMVCRNQNCKAEFCWVCLGPWE   45 (60)
T ss_dssp             SSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred             EeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence            4456788999998  99999999999997

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=81.56  E-value=0.6  Score=27.93  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=18.1

Q ss_pred             CCCcccCCccCcccccccccccc
Q psy15037          7 GCKRIGCTECGFVFCKDCLQGAH   29 (149)
Q Consensus         7 ~~~~v~Cp~C~~aFC~~Cke~WH   29 (149)
                      +...+.-+.|+..||..|...|-
T Consensus        18 ~~~~~~~~~C~H~f~~~Ci~~w~   40 (55)
T 1iym_A           18 GEEARFLPRCGHGFHAECVDMWL   40 (55)
T ss_dssp             TSCCEECSSSCCEECTTHHHHTT
T ss_pred             CCceEECCCCCCcccHHHHHHHH
Confidence            34455666899999999998885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1wd2a_	60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	99.33
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	97.97
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	97.41
d1wd2a_	60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	90.98
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	88.12
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	87.58
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	84.63

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.7e-14  Score=92.96  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=27.5

Q ss_pred             HHHhcCcCCCCCCcceeecCCcceeEeCC
Q psy15037        106 TIKVSTKPCPSCRTATERAGKGVYAYDLY  134 (149)
Q Consensus       106 ~I~~ntK~CP~C~~~IEK~~GCNhM~~~~  134 (149)
                      ||..|||+||+|.++|||++|||||+|..
T Consensus         1 wi~~ntK~CP~C~~~ieK~~GCnhM~C~~   29 (60)
T d1wd2a_           1 WIAANTKECPKCHVTIEKDGGCNHMVCRN   29 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCS
T ss_pred             CchhcCcCCCCCCCeEEECCCCCCeEeCC
Confidence            78899999999999999999999999964

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.3e-07  Score=59.66  Aligned_cols=35  Identities=26%  Similarity=0.544  Sum_probs=30.0

Q ss_pred             CCCCCCcccCCccCccccccccccc---cCC-CCCCccc
Q psy15037          4 GEDGCKRIGCTECGFVFCKDCLQGA---HIG-PCDPGRT   38 (149)
Q Consensus         4 ~e~~~~~v~Cp~C~~aFC~~Cke~W---H~g-~C~~~~~   38 (149)
                      .+++...++||.|++.||+.|++.|   |.+ .|...++
T Consensus        30 ~~~~~~~~~C~~C~~~fC~~C~~~w~~~H~~~tC~~~~~   68 (73)
T d2ct7a1          30 YEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN   68 (73)
T ss_dssp             CCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred             ECCCCCEEEcCCCCCeECcccCcchhcCCCCCCHHHHHH
Confidence            4567889999999999999999999   877 6877654

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=2.3e-05  Score=51.44  Aligned_cols=25  Identities=12%  Similarity=-0.035  Sum_probs=23.3

Q ss_pred             hcCcCCCCCCcceeecCCcceeEeC
Q psy15037        109 VSTKPCPSCRTATERAGKGVYAYDL  133 (149)
Q Consensus       109 ~ntK~CP~C~~~IEK~~GCNhM~~~  133 (149)
                      .+++.||+|..+|++++||++|+|.
T Consensus        16 ~~~k~CP~C~~~~~~~~~~~~~~C~   40 (73)
T d2ct7a1          16 PKFLWCAQCSFGFIYEREQLEATCP   40 (73)
T ss_dssp             CCEECCSSSCCCEECCCSCSCEECT
T ss_pred             CCCCCCCCCCCEeEECCCCCEEEcC
Confidence            4789999999999999999999994

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.048  Score=34.25  Aligned_cols=27  Identities=33%  Similarity=0.795  Sum_probs=22.7

Q ss_pred             CCCCCCCcccC--CccCcccccccccccc
Q psy15037          3 EGEDGCKRIGC--TECGFVFCKDCLQGAH   29 (149)
Q Consensus         3 ~~e~~~~~v~C--p~C~~aFC~~Cke~WH   29 (149)
                      +.+.+.+...|  +.|++.||..|++.|-
T Consensus        17 eK~~GCnhM~C~~~~C~~~fCw~C~~~~~   45 (60)
T d1wd2a_          17 EKDGGCNHMVCRNQNCKAEFCWVCLGPWE   45 (60)
T ss_dssp             SSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred             EECCCCCCeEeCCCCCCCeEECCCCCccc
Confidence            34677888999  4699999999999885

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.12  E-value=0.12  Score=31.91  Aligned_cols=21  Identities=19%  Similarity=0.528  Sum_probs=17.2

Q ss_pred             HHHHHhcCcCCCCCCcceeec
Q psy15037        104 QVTIKVSTKPCPSCRTATERA  124 (149)
Q Consensus       104 ~~~I~~ntK~CP~C~~~IEK~  124 (149)
                      ..|++...+.||.|+.+|.++
T Consensus        36 ~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_          36 DLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             HHHHHTTSSSCTTTCCCCSSC
T ss_pred             HHHhCcCcCCCCCCCcCcccc
Confidence            567777778899999999664

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.58  E-value=0.096  Score=36.75  Aligned_cols=12  Identities=58%  Similarity=1.345  Sum_probs=10.3

Q ss_pred             CcccCCccCccc
Q psy15037          9 KRIGCTECGFVF   20 (149)
Q Consensus         9 ~~v~Cp~C~~aF   20 (149)
                      .+..|-.|||+|
T Consensus        66 ~Pp~CrkCGfvF   77 (105)
T d2gmga1          66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             eChhhhhcCCee
Confidence            356899999999

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=84.63  E-value=0.18  Score=30.46  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=21.5

Q ss_pred             CCCCCCCcccCCccCcccccccccccc
Q psy15037          3 EGEDGCKRIGCTECGFVFCKDCLQGAH   29 (149)
Q Consensus         3 ~~e~~~~~v~Cp~C~~aFC~~Cke~WH   29 (149)
                      +-+++...+..+.|+..||..|...|=
T Consensus        14 ~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl   40 (55)
T d1iyma_          14 ELEDGEEARFLPRCGHGFHAECVDMWL   40 (55)
T ss_dssp             CCCTTSCCEECSSSCCEECTTHHHHTT
T ss_pred             cccCCCEEEEeCCCCCcccHHHHHHHH
Confidence            344556667788899999999999995