Psyllid ID: psy15038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHcccEEEEEcccHcccccccccccccccccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
vccggdlpEVEIISLLEEQLPQYKLRADTLTEFigyenqdwfvpcplqaddptaltpdqIRETLNYF
Flexible Loop (DISEMBL)
vccggdlpEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF
Low Complexity Region (SEG)
VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF
Disordered region (IsUnstruct)
**CGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQA******************
Disordered Region (DISOPRED)
******LPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP***********DQIRETLNYF
Disordered Region (DISEMBL)
VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF
Disordered Region (DISPRO)
***GGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q9UPV9	953	Trafficking kinesin-bindi	yes	N/A	0.955	0.067	0.582	9e-13
Q6PD31	939	Trafficking kinesin-bindi	yes	N/A	0.955	0.068	0.567	3e-12
Q8R2H7	913	Trafficking kinesin-bindi	no	N/A	0.940	0.069	0.545	7e-11
O60296	914	Trafficking kinesin-bindi	no	N/A	0.940	0.068	0.530	7e-10

>sp|Q9UPV9|TRAK1_HUMAN Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 1  VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
          VC   DLPEVEIISLLEEQLP YKLRADT+    GY++ DW     +  D    LT +QI
Sbjct: 32 VCNSTDLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDWLHTPLISPDANIDLTTEQI 88

Query: 61 RETLNYF 67
           ETL YF
Sbjct: 89 EETLKYF 95

Involved in the regulation of endosome-to-lysosome trafficking, including endocytic trafficking of EGF-EGFR complexes and GABA-A receptors.
Homo sapiens (taxid: 9606)

>sp|Q6PD31|TRAK1_MOUSE Trafficking kinesin-binding protein 1 OS=Mus musculus GN=Trak1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 1  VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
          VC   +LPEVEIISLLEEQLP YKLRADT+    GY++ DW     +  D    LT +QI
Sbjct: 31 VCNSTNLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDWLHTPLISPDANIDLTTEQI 87

Query: 61 RETLNYF 67
           ETL YF
Sbjct: 88 EETLKYF 94

Involved in the regulation of endosome-to-lysosome trafficking, including endocytic of EGF-EGFR complexes and GABA-A receptors.

Mus musculus (taxid: 10090)

>sp|Q8R2H7|TRAK2_RAT Trafficking kinesin-binding protein 2 OS=Rattus norvegicus GN=Trak2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 1  VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
          VC   DLPEVE+++LLEEQLPQYKLR D+L  F+ YENQDW      Q D    L+P   
Sbjct: 32 VCSNEDLPEVELVNLLEEQLPQYKLRVDSL--FL-YENQDWSQSSHQQQDASETLSPVLA 88

Query: 61 RETLNY 66
           ET  Y
Sbjct: 89 EETFRY 94

May regulate endosome-to-lysosome trafficking of membrane cargo, including EGFR.

Rattus norvegicus (taxid: 10116)

>sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo sapiens GN=TRAK2 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 1  VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
          VC   DLPEVE++SLLEEQLPQY+L+ DTL  F+ YENQDW      +     AL+P   
Sbjct: 32 VCSNEDLPEVELVSLLEEQLPQYRLKVDTL--FL-YENQDWTQSPHQRQHASDALSPVLA 88

Query: 61 RETLNY 66
           ET  Y
Sbjct: 89 EETFRY 94

May regulate endosome-to-lysosome trafficking of membrane cargo, including EGFR.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
307205692	264	Trafficking kinesin-binding protein 1 [H	1.0	0.253	0.739	6e-22
380023185	1038	PREDICTED: trafficking kinesin-binding p	1.0	0.064	0.710	1e-21
328790499	990	PREDICTED: trafficking kinesin-binding p	1.0	0.067	0.710	1e-21
189241449	938	PREDICTED: similar to GA12518-PA [Tribol	1.0	0.071	0.739	5e-21
270013061	917	hypothetical protein TcasGA2_TC011611 [T	1.0	0.073	0.739	6e-21
242004003	106	conserved hypothetical protein [Pediculu	1.0	0.632	0.705	8e-21
383858128	981	PREDICTED: trafficking kinesin-binding p	1.0	0.068	0.695	2e-20
307186119	284	Trafficking kinesin-binding protein 1 [C	1.0	0.235	0.710	2e-20
345497749	1047	PREDICTED: trafficking kinesin-binding p	1.0	0.063	0.666	5e-20
340727473	980	PREDICTED: trafficking kinesin-binding p	1.0	0.068	0.681	8e-20

>gi|307205692|gb|EFN83954.1| Trafficking kinesin-binding protein 1 [Harpegnathos saltator]

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 59/69 (85%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP-LQADD-PTALTPD 58
           VC GGDLPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DWF+P P L+ +D    L+PD
Sbjct: 173 VCSGGDLPEVEIISLLEEQIPRYRLRADTLTQFQGYENADWFIPAPALKVEDVDLKLSPD 232

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 233 QIRETLNYF 241

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023185|ref|XP_003695406.1| PREDICTED: trafficking kinesin-binding protein milt-like [Apis florea]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/69 (71%), Positives = 56/69 (81%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPL--QADDPTALTPD 58
           VC GG+LPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DWF+P P     D    L+PD
Sbjct: 137 VCSGGELPEVEIISLLEEQIPRYRLRADTLTQFQGYENADWFIPSPALKSVDTDLKLSPD 196

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 197 QIRETLNYF 205

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790499|ref|XP_393589.3| PREDICTED: trafficking kinesin-binding protein milt [Apis mellifera]

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/69 (71%), Positives = 56/69 (81%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPL--QADDPTALTPD 58
           VC GG+LPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DWF+P P     D    L+PD
Sbjct: 90  VCSGGELPEVEIISLLEEQIPRYRLRADTLTQFQGYENADWFIPSPALKSVDTDLKLSPD 149

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 150 QIRETLNYF 158

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241449|ref|XP_973088.2| PREDICTED: similar to GA12518-PA [Tribolium castaneum]

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP-LQADDPT-ALTPD 58
           +C G  LPEVEIISLLEEQ+P+YKLRADTLT+F GYENQDWF+P P LQ D+    L+PD
Sbjct: 38  LCSGESLPEVEIISLLEEQIPKYKLRADTLTKFGGYENQDWFIPSPALQIDEADLKLSPD 97

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 98  QIRETLNYF 106

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013061|gb|EFA09509.1| hypothetical protein TcasGA2_TC011611 [Tribolium castaneum]

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP-LQADDPT-ALTPD 58
           +C G  LPEVEIISLLEEQ+P+YKLRADTLT+F GYENQDWF+P P LQ D+    L+PD
Sbjct: 36  LCSGESLPEVEIISLLEEQIPKYKLRADTLTKFGGYENQDWFIPSPALQIDEADLKLSPD 95

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 96  QIRETLNYF 104

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004003|ref|XP_002422936.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505835|gb|EEB10198.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 59/68 (86%), Gaps = 1/68 (1%)

Query: 1  VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP-LQADDPTALTPDQ 59
          VC G ++PEVEIISLLEEQ+P+YKLRADTLT+F GYENQDWF+P P L+ +  + L+P+Q
Sbjct: 11 VCSGEEIPEVEIISLLEEQIPRYKLRADTLTQFTGYENQDWFIPAPALKPEKQSVLSPEQ 70

Query: 60 IRETLNYF 67
          IRETLNYF
Sbjct: 71 IRETLNYF 78

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858128|ref|XP_003704554.1| PREDICTED: trafficking kinesin-binding protein milt-like [Megachile rotundata]

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 55/69 (79%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPL--QADDPTALTPD 58
           VC G +LPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DWF+P P     D    L+PD
Sbjct: 81  VCSGDELPEVEIISLLEEQIPRYRLRADTLTQFQGYENADWFIPSPALKSLDTDLKLSPD 140

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 141 QIRETLNYF 149

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186119|gb|EFN71844.1| Trafficking kinesin-binding protein 1 [Camponotus floridanus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/69 (71%), Positives = 59/69 (85%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP-LQADD-PTALTPD 58
           VC G +LPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DWF+P P L+++D    L+PD
Sbjct: 195 VCSGEELPEVEIISLLEEQIPRYRLRADTLTQFQGYENADWFIPSPALKSEDVDLKLSPD 254

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 255 QIRETLNYF 263

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497749|ref|XP_003428055.1| PREDICTED: trafficking kinesin-binding protein milt-like [Nasonia vitripennis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 56/69 (81%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCP--LQADDPTALTPD 58
           VC G +LPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DW++P     Q ++   L+PD
Sbjct: 122 VCSGEELPEVEIISLLEEQIPRYRLRADTLTQFQGYENSDWYIPSAKVAQEEEDLKLSPD 181

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 182 QIRETLNYF 190

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727473|ref|XP_003402068.1| PREDICTED: trafficking kinesin-binding protein milt-like [Bombus terrestris]

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 55/69 (79%), Gaps = 2/69 (2%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPL--QADDPTALTPD 58
           VC G +LPEVEIISLLEEQ+P+Y+LRADTLT+F GYEN DWF+P P     D    L+P+
Sbjct: 87  VCSGAELPEVEIISLLEEQIPRYRLRADTLTQFQGYENADWFIPSPALKSIDVDLKLSPE 146

Query: 59  QIRETLNYF 67
           QIRETLNYF
Sbjct: 147 QIRETLNYF 155

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
UNIPROTKB|Q9UPV9	953	TRAK1 "Trafficking kinesin-bin	0.940	0.066	0.602	1.3e-12
UNIPROTKB|F1SJP2	939	TRAK1 "Uncharacterized protein	0.955	0.068	0.582	1.7e-12
MGI|MGI:1914345	939	Trak1 "trafficking protein, ki	0.940	0.067	0.588	4.4e-12
UNIPROTKB|D4ACC5	939	Trak1 "Protein Trak1" [Rattus	0.940	0.067	0.588	4.4e-12
UNIPROTKB|F1NIH6	964	TRAK1 "Uncharacterized protein	0.940	0.065	0.588	4.6e-12
RGD|620915	913	Trak2 "trafficking protein, ki	0.940	0.069	0.545	5e-11
UNIPROTKB|O60296	914	TRAK2 "Trafficking kinesin-bin	0.925	0.067	0.552	1.3e-10

UNIPROTKB|Q9UPV9 TRAK1 "Trafficking kinesin-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 41/68 (60%), Positives = 47/68 (69%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTA-LTPDQ 59
             VC   DLPEVEIISLLEEQLP YKLRADT+    GY++ DW +  PL + D    LT +Q
Sbjct:    32 VCNSTDLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDW-LHTPLISPDANIDLTTEQ 87

Query:    60 IRETLNYF 67
             I ETL YF
Sbjct:    88 IEETLKYF 95

GO:0050811 "GABA receptor binding" evidence=IEA

GO:0006605 "protein targeting" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SJP2 TRAK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 39/67 (58%), Positives = 44/67 (65%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
             VC   DLPEVEIISLLEEQLP YKLRADT+    GY++ DW     +  D    LT +QI
Sbjct:    16 VCNSTDLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDWLHTPVISPDANIDLTTEQI 72

Query:    61 RETLNYF 67
              ETL YF
Sbjct:    73 EETLKYF 79

GO:0050811 "GABA receptor binding" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1914345 Trak1 "trafficking protein, kinesin binding 1" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 40/68 (58%), Positives = 47/68 (69%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTA-LTPDQ 59
             VC   +LPEVEIISLLEEQLP YKLRADT+    GY++ DW +  PL + D    LT +Q
Sbjct:    31 VCNSTNLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDW-LHTPLISPDANIDLTTEQ 86

Query:    60 IRETLNYF 67
             I ETL YF
Sbjct:    87 IEETLKYF 94

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0050811 "GABA receptor binding" evidence=IDA

UNIPROTKB|D4ACC5 Trak1 "Protein Trak1" [Rattus norvegicus (taxid:10116)]

 Score = 175 (66.7 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 40/68 (58%), Positives = 47/68 (69%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTA-LTPDQ 59
             VC   +LPEVEIISLLEEQLP YKLRADT+    GY++ DW +  PL + D    LT +Q
Sbjct:    31 VCNSTNLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDW-LHTPLISPDANIDLTTEQ 86

Query:    60 IRETLNYF 67
             I ETL YF
Sbjct:    87 IEETLKYF 94

GO:0005739 "mitochondrion" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050811 "GABA receptor binding" evidence=IEA

UNIPROTKB|F1NIH6 TRAK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 40/68 (58%), Positives = 47/68 (69%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTA-LTPDQ 59
             VC   +LPEVEIISLLEEQLP YKLRADT+    GY++ DW +  PL + D    LT +Q
Sbjct:    41 VCNSTNLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDW-LHTPLISPDANIDLTTEQ 96

Query:    60 IRETLNYF 67
             I ETL YF
Sbjct:    97 IEETLKYF 104

GO:0005739 "mitochondrion" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0050811 "GABA receptor binding" evidence=IEA

RGD|620915 Trak2 "trafficking protein, kinesin binding 2" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 36/66 (54%), Positives = 42/66 (63%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
             VC   DLPEVE+++LLEEQLPQYKLR D+L  F+ YENQDW      Q D    L+P   
Sbjct:    32 VCSNEDLPEVELVNLLEEQLPQYKLRVDSL--FL-YENQDWSQSSHQQQDASETLSPVLA 88

Query:    61 RETLNY 66
              ET  Y
Sbjct:    89 EETFRY 94

GO:0005102 "receptor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005769 "early endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006493 "protein O-linked glycosylation" evidence=IDA

GO:0006605 "protein targeting" evidence=IDA

GO:0006836 "neurotransmitter transport" evidence=NAS

GO:0019899 "enzyme binding" evidence=IPI

GO:0050811 "GABA receptor binding" evidence=IMP;IDA

UNIPROTKB|O60296 TRAK2 "Trafficking kinesin-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 37/67 (55%), Positives = 44/67 (65%)

Query:     1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPT-ALTPDQ 59
             VC   DLPEVE++SLLEEQLPQY+L+ DTL  F+ YENQDW    P Q    + AL+P  
Sbjct:    32 VCSNEDLPEVELVSLLEEQLPQYRLKVDTL--FL-YENQDW-TQSPHQRQHASDALSPVL 87

Query:    60 IRETLNY 66
               ET  Y
Sbjct:    88 AEETFRY 94


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.142   0.450    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       67        67   0.00091  102 3  11 22  0.48    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  517 (55 KB)
  Total size of DFA:  100 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.27u 0.08s 9.35t   Elapsed:  00:00:11
  Total cpu time:  9.27u 0.08s 9.35t   Elapsed:  00:00:12
  Start:  Thu Aug 15 14:35:46 2013   End:  Thu Aug 15 14:35:58 2013

GO:0005634 "nucleus" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005102 "receptor binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0050811 "GABA receptor binding" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UPV9	TRAK1_HUMAN	No assigned EC number	0.5820	0.9552	0.0671	yes	N/A
Q6PD31	TRAK1_MOUSE	No assigned EC number	0.5671	0.9552	0.0681	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
pfam04849	307	pfam04849, HAP1_N, HAP1 N-terminal conserved regio	5e-07

>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region

 Score = 44.0 bits (104), Expect = 5e-07
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 16 LEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPT-ALTPDQIRETLNYF 67
          LEEQLP Y +RADTL    GY++ DW    P  + D    L+ +Q  ETL Y 
Sbjct: 1  LEEQLPPYSIRADTLG---GYDDDDWKT--PRASPDARLDLSTEQRAETLKYL 48

This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	99.59
KOG4360|consensus	596		98.47

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=99.59  E-value=3.1e-16  Score=118.13  Aligned_cols=47  Identities=62%  Similarity=1.028  Sum_probs=43.3

Q ss_pred             HhhcCceeeeccccccccccccCcccccCCCCCCCCCCCCHHHHHHhhcCC
Q psy15038         17 EEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF   67 (67)
Q Consensus        17 eeqiP~YkLRaDsl~~~~gYenqDW~~~~p~~~~~~~~LSp~q~eETl~Yf   67 (67)
                      +||+|+|||||||||   ||+|+||+ +|+..|+.+.+|||+|++||||||
T Consensus         1 ~e~~~~y~~r~d~l~---~~~~~dw~-~p~~~~~~~~~ls~~~~~~~l~y~   47 (306)
T PF04849_consen    1 EEQLPPYKLRADTLY---GYDNQDWL-TPAAPPDRRPELSPEQIEETLRYF   47 (306)
T ss_pred             CCCCCCCCccccccc---cccccccc-CCCCCCCCCCCCCHHHHHHHHHHH
Confidence            589999999999996   99999999 557788888999999999999998

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4360|consensus

Probab=98.47  E-value=2.9e-08  Score=80.40  Aligned_cols=45  Identities=42%  Similarity=0.586  Sum_probs=39.5

Q ss_pred             cCceeeeccccccccccccCcccccCCCCCCCCCC--CCHHHHHHhhcCC
Q psy15038         20 LPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTA--LTPDQIRETLNYF   67 (67)
Q Consensus        20 iP~YkLRaDsl~~~~gYenqDW~~~~p~~~~~~~~--LSp~q~eETl~Yf   67 (67)
                      +|+|||++|+.+   ||+|+||.+.|.-.+|...+  +|+.+++||++||
T Consensus         1 lpqykl~~~~~~---g~~h~~~~~~p~i~~d~~~a~s~s~~~a~et~~~~   47 (596)
T KOG4360|consen    1 LPQYKLMRDTRL---GYCHADWRLGPGIPADATCAPSLSASPAEETSAYP   47 (596)
T ss_pred             CCchhhccchhh---cccccchhhCCCCchhhccCCCCcccccccCccch
Confidence            699999999996   99999999875446677666  9999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00