Psyllid ID: psy15067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
LLQGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEAGTY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEcccHHHcccccccccccccHHHHHHHccccccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
llqgeilaprppdhdetgvckfgtgckfahgahelrviprhpryrtklcqsyhqdgfcpyvyffkifhpipyytteagty
Flexible Loop (DISEMBL)
llqgeilaprppdhdetgVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEAGTY
Low Complexity Region (SEG)
LLQGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEAGTY
Disordered region (IsUnstruct)
*****************GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTT*****
Disordered Region (DISOPRED)
LLQGEILAPRPPDHDETGVCKFGTGCKFAHGAHEL********YRTKLCQSYHQDGFCPYVYFFKIFH************
Disordered Region (DISEMBL)
LLQGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEAGTY
Disordered Region (DISPRO)
*****ILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LLQGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEAGTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q7ZXW9	363	Zinc finger protein 36, C	N/A	N/A	0.575	0.126	0.586	1e-12
Q805B4	364	Zinc finger protein 36, C	N/A	N/A	0.575	0.126	0.586	2e-12
Q07352	338	Zinc finger protein 36, C	yes	N/A	0.575	0.136	0.586	4e-12
P23950	338	Zinc finger protein 36, C	no	N/A	0.575	0.136	0.586	4e-12
A4IIN5	333	Zinc finger protein 36, C	no	N/A	0.575	0.138	0.586	4e-12
P17431	338	Zinc finger protein 36, C	yes	N/A	0.575	0.136	0.586	4e-12
P47980	436	Protein TIS11 OS=Drosophi	yes	N/A	0.575	0.105	0.565	6e-12
P47974	494	Zinc finger protein 36, C	no	N/A	0.575	0.093	0.586	1e-11
P23949	367	Zinc finger protein 36, C	no	N/A	0.575	0.125	0.586	1e-11
P47979	404	Zinc finger protein zfs1	yes	N/A	0.55	0.108	0.477	2e-09

>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 141 EESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 186

Required for tubulogenesis during pronephros development.
Xenopus laevis (taxid: 8355)

>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 143 EENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 188

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

Probable regulatory protein involved in regulating the response to growth factors.

Homo sapiens (taxid: 9606)

>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

Probable regulatory protein involved in regulating the response to growth factors.

Mus musculus (taxid: 10090)

>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis GN=zfp36l2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 111 EESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 156

Required for tubulogenesis during pronephros development.

Xenopus tropicalis (taxid: 8364)

>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

Probable regulatory protein involved in regulating the response to growth factors.

Rattus norvegicus (taxid: 10116)

>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 37/46 (80%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G CK+G  C+FAHG+HELR + RHP+Y+T+ C+++H  GFCPY
Sbjct: 145 EEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPY 190

Drosophila melanogaster (taxid: 7227)

>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 163 EESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 208

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Homo sapiens (taxid: 9606)

>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 136 EESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 181

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Mus musculus (taxid: 10090)

>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zfs1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 34/44 (77%)

Query: 17  TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +G C++G+ C+FAHG  EL+  PRHP+Y+++ C+S+   G+CPY
Sbjct: 338 SGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPY 381

Binds to specific AU-rich elements (ARE) in the 3'-untranslated region of target mRNAs and promotes their degradation. Binds to ARE present in the arz1 mRNA and stimulates the rate of arz1 mRNA decay. Required for coordination of septum formation with exit from mitosis. Involved in the mating response pathway. Induces sexual development and ascus formation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
307947822	503	Tis11-like protein [Ilyanassa obsoleta]	0.575	0.091	0.630	2e-12
2353340	401	Tis11 family protein [Crassostrea virgin	0.575	0.114	0.608	2e-12
444705919	2301	Thyroid adenoma-associated protein [Tupa	0.575	0.019	0.586	2e-12
405960411	396	Butyrate response factor 1 [Crassostrea	0.575	0.116	0.608	3e-12
391330077	354	PREDICTED: uncharacterized protein LOC10	0.575	0.129	0.543	5e-12
118344116	380	zinc finger protein [Ciona intestinalis]	0.575	0.121	0.608	6e-12
312383024	572	hypothetical protein AND_04029 [Anophele	0.612	0.085	0.568	7e-12
72010393	386	PREDICTED: zinc finger protein 36, C3H1	0.587	0.121	0.595	1e-11
384485557	434	hypothetical protein RO3G_02441 [Rhizopu	0.562	0.103	0.555	2e-11
427781319	368	hypothetical protein [Rhipicephalus pulc	0.575	0.125	0.586	2e-11

>gi|307947822|gb|ABV54790.2| Tis11-like protein [Ilyanassa obsoleta]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 39/46 (84%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHGAHELR + RHP+Y+T+LC++YH  GFCPY
Sbjct: 156 EESGHCKYGDKCQFAHGAHELRNLSRHPKYKTELCRTYHSVGFCPY 201

Source: Ilyanassa obsoleta

Species: Ilyanassa obsoleta

Genus: Ilyanassa

Family: Nassariidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|2353340|gb|AAB69448.1| Tis11 family protein [Crassostrea virginica]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 39/46 (84%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHGAHELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 125 EESGHCKYGDKCQFAHGAHELRNLNRHPKYKTELCRTFHTIGFCPY 170

Source: Crassostrea virginica

Species: Crassostrea virginica

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|444705919|gb|ELW47297.1| Thyroid adenoma-associated protein [Tupaia chinensis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 15   DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
            +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 1900 EESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 1945

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405960411|gb|EKC26337.1| Butyrate response factor 1 [Crassostrea gigas]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 39/46 (84%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHGAHELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 123 EESGHCKYGDKCQFAHGAHELRNLNRHPKYKTELCRTFHTIGFCPY 168

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|391330077|ref|XP_003739491.1| PREDICTED: uncharacterized protein LOC100902394 [Metaseiulus occidentalis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 38/46 (82%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G+CK+G  C+FAHGA ELR + RHP+Y+++LC+++H +G CPY
Sbjct: 102 EENGMCKYGARCQFAHGAAELRTLARHPKYKSQLCRTFHSNGLCPY 147

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118344116|ref|NP_001071879.1| zinc finger protein [Ciona intestinalis] gi|70571730|dbj|BAE06810.1| zinc finger protein [Ciona intestinalis]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E G CK+G  C+FAHG HELR + RHP+Y+T+LC++YH  GFCPY
Sbjct: 140 EENGKCKYGDKCQFAHGKHELRRMVRHPKYKTELCRTYHTSGFCPY 185

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312383024|gb|EFR28263.1| hypothetical protein AND_04029 [Anopheles darlingi]

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 10  RPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           RP  ++E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 282 RP--YEEAGECKYGDKCQFAHGMHELRNLQRHPKYKTELCRTFHSVGFCPY 330

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|72010393|ref|XP_782811.1| PREDICTED: zinc finger protein 36, C3H1 type-like 2-A-like isoform 2 [Strongylocentrotus purpuratus]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 14  HDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           ++E G CK+G  C+FAHG HELRV+ RHP+Y+T+LC+++H  GFCPY
Sbjct: 126 YEENGTCKYGDKCQFAHGIHELRVLSRHPKYKTELCRTFHTVGFCPY 172

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|384485557|gb|EIE77737.1| hypothetical protein RO3G_02441 [Rhizopus delemar RA 99-880]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query: 16  ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           E GVC++G+ C++AHG  E+R I RH RY+T++C+ YH DG CPY
Sbjct: 288 ELGVCRYGSKCRYAHGEQEIRTITRHARYKTEICRDYHLDGTCPY 332

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|427781319|gb|JAA56111.1| hypothetical protein [Rhipicephalus pulchellus]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query: 15  DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 163 EESGTCKYGDKCQFAHGGHELRTLARHPKYKTELCRTFHTAGFCPY 208

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.575	0.261	0.586	4.9e-14
UNIPROTKB|G3V2P5	207	ZFP36L1 "Zinc finger protein 3	0.575	0.222	0.586	4.9e-14
UNIPROTKB|A4IIN5	333	zfp36l2 "Zinc finger protein 3	0.575	0.138	0.586	1.3e-13
UNIPROTKB|A7MB98	338	ZFP36L1 "Uncharacterized prote	0.575	0.136	0.586	1.3e-13
UNIPROTKB|E2R2W0	338	ZFP36L1 "Uncharacterized prote	0.575	0.136	0.586	1.3e-13
UNIPROTKB|Q07352	338	ZFP36L1 "Zinc finger protein 3	0.575	0.136	0.586	1.3e-13
UNIPROTKB|I3LB77	338	ZFP36L1 "Uncharacterized prote	0.575	0.136	0.586	1.3e-13
MGI|MGI:107946	338	Zfp36l1 "zinc finger protein 3	0.575	0.136	0.586	1.3e-13
RGD|62009	338	Zfp36l1 "zinc finger protein 3	0.575	0.136	0.586	1.3e-13
UNIPROTKB|P17431	338	Zfp36l1 "Zinc finger protein 3	0.575	0.136	0.586	1.3e-13

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   102 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 147

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   130 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 175

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A4IIN5 zfp36l2 "Zinc finger protein 36, C3H1 type-like 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 38/46 (82%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   111 EESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 156

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R2W0 ZFP36L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

UNIPROTKB|I3LB77 ZFP36L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:107946 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0043488 "regulation of mRNA stability" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|62009 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA;ISO

GO:0001570 "vasculogenesis" evidence=IEA;ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=IMP

GO:0033077 "T cell differentiation in thymus" evidence=IEA;ISO

GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO

UNIPROTKB|P17431 Zfp36l1 "Zinc finger protein 36, C3H1 type-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
             +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct:   124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P17431	TISB_RAT	No assigned EC number	0.5869	0.575	0.1360	yes	N/A
Q9C9N3	C3H14_ARATH	No assigned EC number	0.5111	0.5625	0.1451	yes	N/A
Q07352	TISB_HUMAN	No assigned EC number	0.5869	0.575	0.1360	yes	N/A
P47980	TIS1_DROME	No assigned EC number	0.5652	0.575	0.1055	yes	N/A
Q6L5G1	C3H39_ORYSJ	No assigned EC number	0.5217	0.575	0.1341	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	7e-08
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	0.001

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 47.4 bits (112), Expect = 7e-08
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 13  DHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
              E   C++     FAH      +   HP+Y+T+  + +   G+ PY
Sbjct: 120 SSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPY 167

Length = 351

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 18  GVCKFGTGCKFAHGAHELRVIPRHPR--YRTKLCQSYHQDGFCPY 60
           G C +G  C F HG      +       Y    C++  + G  P 
Sbjct: 284 GYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPS 328

Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG1677|consensus	332		99.75
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.31
KOG1595|consensus	528		99.24
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.12
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	99.04
KOG2333|consensus	614		98.87
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.81
smart00356	27	ZnF_C3H1 zinc finger.	98.61
KOG1040|consensus	325		98.57
smart00356	27	ZnF_C3H1 zinc finger.	98.42
KOG1677|consensus	332		98.35
KOG2494|consensus	331		98.12
KOG1595|consensus	528		98.12
KOG1763|consensus	343		97.78
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.41
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.38
KOG1492|consensus	377		97.15
KOG2185|consensus	486		97.01
COG5152	259	Uncharacterized conserved protein, contains RING a	96.95
KOG1040|consensus	325		96.9
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.79
KOG1492|consensus	377		96.72
COG5152	259	Uncharacterized conserved protein, contains RING a	96.62
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.17
KOG2185|consensus	486		96.06
KOG1813|consensus	313		95.4
KOG1813|consensus	313		94.74
KOG2494|consensus	331		94.67
KOG1039|consensus	344		93.56
KOG1039|consensus	344		92.93
KOG4791|consensus	667		90.47
KOG1763|consensus	343		89.09
KOG4791|consensus	667		87.15
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	83.88

>KOG1677|consensus

Probab=99.75  E-value=8.6e-19  Score=125.12  Aligned_cols=70  Identities=34%  Similarity=0.749  Sum_probs=64.1

Q ss_pred             CCCCCCCccccCCCCCCC-CCCCcccccccccc------ccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067          5 EILAPRPPDHDETGVCKF-GTGCKFAHGAHELR------VIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~-G~~C~faH~~~e~~------~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      -+++++|..|...|.|+| |++|+|+|+.++++      ....+++++|++|..|..+|.|+||.+|+|+|+....+
T Consensus       129 ~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  129 RYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             cccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            478999999999999999 99999999999999      33467899999999999999999999999999988655

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.31  E-value=9.9e-13  Score=94.41  Aligned_cols=69  Identities=26%  Similarity=0.554  Sum_probs=59.9

Q ss_pred             CCC--CCCccccCCCCCCC---CCCCccc---cccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067          6 ILA--PRPPDHDETGVCKF---GTGCKFA---HGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus         6 ~~~--~lC~~f~~~g~C~~---G~~C~fa---H~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      +++  +||..|-..|.|++   |+.|+|+   |+..++....-...++|++|.+|...|+|+||.+|.|.|+.+..+
T Consensus       226 ~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i  302 (351)
T COG5063         226 YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI  302 (351)
T ss_pred             hcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhc
Confidence            455  89999988899999   9999999   999888765544568999999999999999999999999987643

>KOG1595|consensus

Probab=99.24  E-value=3.6e-12  Score=96.41  Aligned_cols=65  Identities=31%  Similarity=0.627  Sum_probs=56.8

Q ss_pred             CCCCCCCccccCCCCCCCCCCCccccccccccccCCCC-CccccccccccccccCCCCCCCcccCCCCCCCCCC
Q psy15067          5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHP-RYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEA   77 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p-~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~   77 (80)
                      .|....|+.|. +|.|+.||.|+|||++.|..   .|| .|||++|+.-   |+|++ .-|.|+|..+++++..
T Consensus       233 hYs~tpCPefr-kG~C~rGD~CEyaHgvfEcw---LHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~  298 (528)
T KOG1595|consen  233 HYSSTPCPEFR-KGSCERGDSCEYAHGVFECW---LHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLP  298 (528)
T ss_pred             cccCccCcccc-cCCCCCCCccccccceehhh---cCHHHhccccccCC---CCCcc-ceEeeecChHHhcccC
Confidence            35688999997 59999999999999999988   566 7999999954   89998 9999999999987654

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.12  E-value=3.9e-11  Score=86.26  Aligned_cols=73  Identities=15%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CCCCCCCccccCCCCCCCCCCCccccccccccccCCCC--CccccccccccccccCCCCCCCcccCCCCCCCCCC
Q psy15067          5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHP--RYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEA   77 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p--~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~   77 (80)
                      .|+|+.|.+|...|.|+||.+|.|+|+..+...++.++  .++..+|+.+...|.|++|.+|.++|+...+...+
T Consensus       271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~  345 (351)
T COG5063         271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSV  345 (351)
T ss_pred             ccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhhhhh
Confidence            57899999999999999999999999988877666665  67889999999999999999999999987765443

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.04  E-value=2.4e-11  Score=58.80  Aligned_cols=26  Identities=38%  Similarity=0.673  Sum_probs=16.8

Q ss_pred             CCCCCCccccCCCCCCCCCCCccccc
Q psy15067          6 ILAPRPPDHDETGVCKFGTGCKFAHG   31 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~~C~faH~   31 (80)
                      +++++|++|+..|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            46677777777777777777777776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2333|consensus

Probab=98.87  E-value=6.3e-10  Score=84.36  Aligned_cols=62  Identities=21%  Similarity=0.459  Sum_probs=51.8

Q ss_pred             CCCCccccCC--CCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCC
Q psy15067          8 APRPPDHDET--GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIP   71 (80)
Q Consensus         8 ~~lC~~f~~~--g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~   71 (80)
                      ..||+.....  ..|.|||+|+|.||++.+...+  +......|+.|...|+||+|-+|||+-...
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHl  139 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--APDIGPSCPVFESLGFCPYGFKCRFLGAHL  139 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhcc--CcccCCccceeeccccCCccceeehhhccc
Confidence            6899998765  4699999999999999987654  334567899999999999999999986543

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.81  E-value=5.5e-10  Score=53.97  Aligned_cols=27  Identities=33%  Similarity=0.706  Sum_probs=21.5

Q ss_pred             ccccccccccccccCCCCCCCcccCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHPI   70 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~   70 (80)
                      +++.+|+.|...|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            468899999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=98.61  E-value=3e-08  Score=47.01  Aligned_cols=25  Identities=32%  Similarity=0.579  Sum_probs=17.0

Q ss_pred             CCCCCCccccCCCCCCCCCCCccccc
Q psy15067          6 ILAPRPPDHDETGVCKFGTGCKFAHG   31 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~~C~faH~   31 (80)
                      +++.+|+.| ..|.|++|++|+|+|+
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            456677777 5677777777777775

>KOG1040|consensus

Probab=98.57  E-value=2.5e-08  Score=72.49  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             CCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCC
Q psy15067          5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIP   71 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~   71 (80)
                      .....+|++|. .|.|+.||.|.|+|.. ++.        +...|..|+..|.|.++..|.|.|...
T Consensus        74 ~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~--------k~rec~ff~~~g~c~~~~~c~y~h~dp  130 (325)
T KOG1040|consen   74 SRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLT--------KMRECKFFSLFGECTNGKDCPYLHGDP  130 (325)
T ss_pred             cCCceeehhhh-hhhhhccCcCcchhhh-hhc--------ccccccccccccccccccCCcccCCCh
Confidence            45688999997 6999999999999987 444        245788888888888888888888874

>smart00356 ZnF_C3H1 zinc finger

Probab=98.42  E-value=1.6e-07  Score=44.40  Aligned_cols=26  Identities=42%  Similarity=1.044  Sum_probs=22.9

Q ss_pred             ccccccccccccccCCCCCCCcccCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHPI   70 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~   70 (80)
                      +++.+|+.| ..|.|++|++|+|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            467799977 89999999999999974

>KOG1677|consensus

Probab=98.35  E-value=5.6e-07  Score=64.37  Aligned_cols=66  Identities=30%  Similarity=0.624  Sum_probs=55.7

Q ss_pred             CCCccccCCCCCCCCCCCccccccccccccC--------CCCCccccccccccccccCCC-CCCCcccCCCCCCC
Q psy15067          9 PRPPDHDETGVCKFGTGCKFAHGAHELRVIP--------RHPRYRTKLCQSYHQDGFCPY-VYFFKIFHPIPYYT   74 (80)
Q Consensus         9 ~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~--------~~p~~kt~~C~~f~~~G~C~~-G~~C~f~H~~~~~~   74 (80)
                      ..|..+...+.|.++..|++.|...+.+...        ....+++.+|..|...|.|+| |+.|+|+|+.++.+
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r  161 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR  161 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence            6888888889999999999999874444322        123789999999999999999 99999999999876

>KOG2494|consensus

Probab=98.12  E-value=5.8e-07  Score=65.23  Aligned_cols=60  Identities=27%  Similarity=0.365  Sum_probs=45.2

Q ss_pred             CCCCccccCCCCCCCCCC-CccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067          8 APRPPDHDETGVCKFGTG-CKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~-C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      -++||.|+ .+.|.+||. |+|+|..+.....    +-+-.-|.+| +.|.|.+ +.|+|+|.+..++
T Consensus        37 ~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~----~g~v~aC~Ds-~kgrCsR-~nCkylHpp~hlk   97 (331)
T KOG2494|consen   37 LEVCREFL-RNTCSRGDRECKFAHPPKNCQVS----NGRVIACFDS-QKGRCSR-ENCKYLHPPQHLK   97 (331)
T ss_pred             HHHHHHHH-hccccCCCccccccCCCCCCCcc----CCeEEEEecc-ccCccCc-ccceecCCChhhh
Confidence            46899998 588999999 9999987644432    2234569866 4788984 5599999987654

>KOG1595|consensus

Probab=98.12  E-value=2.1e-06  Score=65.62  Aligned_cols=64  Identities=23%  Similarity=0.281  Sum_probs=48.9

Q ss_pred             cCCCCCCCccccCCCCCCCCCCCcccc-ccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          4 GEILAPRPPDHDETGVCKFGTGCKFAH-GAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         4 ~~~~~~lC~~f~~~g~C~~G~~C~faH-~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      .+||++.|+.=    .|.-+-.|-|+| +...-|..|+.=.|..++|+.|. .|.|+.|+.|.|+|+.-+
T Consensus       197 y~fKir~C~R~----~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfE  261 (528)
T KOG1595|consen  197 YSFKIRRCSRP----RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFE  261 (528)
T ss_pred             EeeeecccCCc----cCCCcccCCccCCCcccccCCcccccccCccCcccc-cCCCCCCCccccccceeh
Confidence            36788999743    688889999999 65555532222247789999886 499999999999999765

>KOG1763|consensus

Probab=97.78  E-value=3.2e-06  Score=61.01  Aligned_cols=65  Identities=28%  Similarity=0.456  Sum_probs=45.7

Q ss_pred             CCCCCccccCCCCCCCCCCCccccccccccccC--------C----------------C--CCccc-cccccccc-----
Q psy15067          7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRVIP--------R----------------H--PRYRT-KLCQSYHQ-----   54 (80)
Q Consensus         7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~--------~----------------~--p~~kt-~~C~~f~~-----   54 (80)
                      |+.+|-.| ..|.|..|+.|.|+|+....+...        +                +  |...| .+|++|..     
T Consensus        91 KSvvCafF-k~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~  169 (343)
T KOG1763|consen   91 KSVVCAFF-KQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENG  169 (343)
T ss_pred             hHHHHHHH-hccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC
Confidence            57789877 479999999999999988765321        0                0  11111 47996542     


Q ss_pred             -ccc---CCCCC-CCcccCCCCC
Q psy15067         55 -DGF---CPYVY-FFKIFHPIPY   72 (80)
Q Consensus        55 -~G~---C~~G~-~C~f~H~~~~   72 (80)
                       .|+   ||+|. .|.|.|-.+.
T Consensus       170 kYGWfW~CPnGg~~C~YrHaLP~  192 (343)
T KOG1763|consen  170 KYGWFWECPNGGDKCIYRHALPE  192 (343)
T ss_pred             CccceeECCCCCCeeeeeecCCc
Confidence             343   99986 8999998765

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.41  E-value=1.9e-05  Score=55.81  Aligned_cols=65  Identities=26%  Similarity=0.444  Sum_probs=46.5

Q ss_pred             CCCCCccccCCCCCCCCCCCccccccccccccC-------------CC-----CCc-cccccccccc------cc---cC
Q psy15067          7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRVIP-------------RH-----PRY-RTKLCQSYHQ------DG---FC   58 (80)
Q Consensus         7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~-------------~~-----p~~-kt~~C~~f~~------~G---~C   58 (80)
                      |+.+|..|. .+.|..|+.|+|+|+.++.+...             ..     |.. -..+|++|-.      .|   .|
T Consensus        84 K~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~C  162 (299)
T COG5252          84 KTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTC  162 (299)
T ss_pred             hhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeC
Confidence            577888885 78999999999999988876431             01     111 1267995542      23   39


Q ss_pred             CCC-CCCcccCCCCC
Q psy15067         59 PYV-YFFKIFHPIPY   72 (80)
Q Consensus        59 ~~G-~~C~f~H~~~~   72 (80)
                      |+| .+|.|.|..+.
T Consensus       163 Png~~~C~y~H~Lp~  177 (299)
T COG5252         163 PNGNMRCSYIHKLPD  177 (299)
T ss_pred             CCCCceeeeeeccCc
Confidence            988 79999998776

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.38  E-value=0.00024  Score=51.10  Aligned_cols=57  Identities=21%  Similarity=0.218  Sum_probs=41.6

Q ss_pred             CCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCC
Q psy15067          6 ILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPI   70 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~   70 (80)
                      +...+|+.|. .|.|+-++.|.|+|+..-...       .+.+|+.|...|.|..|..|.+.|.+
T Consensus       102 ~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s-------~~~~c~~Fs~~G~cs~g~~c~~~h~d  158 (285)
T COG5084         102 SSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSS-------QGPPCRSFSLKGSCSSGPSCGYSHID  158 (285)
T ss_pred             cCCcccchhc-cccCcCCCccccccCCCcccc-------cCCCcccccccceeccCCCCCccccC
Confidence            4467899885 689999999999998764442       14567766677777777777777765

>KOG1492|consensus

Probab=97.15  E-value=0.00023  Score=50.46  Aligned_cols=62  Identities=24%  Similarity=0.407  Sum_probs=42.2

Q ss_pred             CCCCccccCCCCCCCCCCCccccccccccccC------------------CCCCccccccccccccccCCCCCCCcccCC
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAHELRVIP------------------RHPRYRTKLCQSYHQDGFCPYVYFFKIFHP   69 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~------------------~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~   69 (80)
                      +..|++|..+|.|-.|..|+|.|....-.--+                  ..| .+-..|+ |+..|.|- .+.|||.|-
T Consensus       206 avycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldp-rripacr-yfllgkcn-npncryvhi  282 (377)
T KOG1492|consen  206 AVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDP-RRIPACR-YFLLGKCN-NPNCRYVHI  282 (377)
T ss_pred             eeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCc-cccchhh-hhhhccCC-CCCceEEEE
Confidence            56799998899999999999999755422100                  112 2235688 55678884 778888886


Q ss_pred             CCC
Q psy15067         70 IPY   72 (80)
Q Consensus        70 ~~~   72 (80)
                      .-.
T Consensus       283 hys  285 (377)
T KOG1492|consen  283 HYS  285 (377)
T ss_pred             eec
Confidence            543

>KOG2185|consensus

Probab=97.01  E-value=0.00025  Score=53.32  Aligned_cols=25  Identities=32%  Similarity=0.696  Sum_probs=21.6

Q ss_pred             CCCCccccCCCCCCCCCCCccccccc
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAH   33 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~   33 (80)
                      -.+|++|+ .|.|+|+++|+|+|+..
T Consensus       140 MkpC~ffL-eg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  140 MKPCKFFL-EGRCRFGENCRFSHGLD  164 (486)
T ss_pred             hccchHhh-ccccccCcccccccCcc
Confidence            36899887 58999999999999865

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.95  E-value=0.00025  Score=49.15  Aligned_cols=28  Identities=25%  Similarity=0.685  Sum_probs=24.9

Q ss_pred             ccccccccccccCCCCCCCcccCCCCCC
Q psy15067         46 TKLCQSYHQDGFCPYVYFFKIFHPIPYY   73 (80)
Q Consensus        46 t~~C~~f~~~G~C~~G~~C~f~H~~~~~   73 (80)
                      ..+|+.|..+|+|-||+.|.|+|+.+..
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhh
Confidence            3679999999999999999999997754

>KOG1040|consensus

Probab=96.90  E-value=0.00062  Score=49.74  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=24.3

Q ss_pred             CCCCCccccCCCCCCCCCCCcccccccc
Q psy15067          7 LAPRPPDHDETGVCKFGTGCKFAHGAHE   34 (80)
Q Consensus         7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e   34 (80)
                      +-+.|.+|...|.|..++.|.|.|...+
T Consensus       104 k~rec~ff~~~g~c~~~~~c~y~h~dpq  131 (325)
T KOG1040|consen  104 KMRECKFFSLFGECTNGKDCPYLHGDPQ  131 (325)
T ss_pred             ccccccccccccccccccCCcccCCChh
Confidence            4568999999999999999999998743

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.79  E-value=0.0009  Score=29.59  Aligned_cols=18  Identities=28%  Similarity=0.560  Sum_probs=11.7

Q ss_pred             CCccccCCCCCCCCCCCcccc
Q psy15067         10 RPPDHDETGVCKFGTGCKFAH   30 (80)
Q Consensus        10 lC~~f~~~g~C~~G~~C~faH   30 (80)
                      +|++|..   |+.+++|.|+|
T Consensus         1 ~Ck~~~~---C~~~~~C~f~H   18 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSH   18 (19)
T ss_pred             CCcCcCC---CCCCCcCccCC
Confidence            3664432   77777777777

>KOG1492|consensus

Probab=96.72  E-value=0.00076  Score=47.87  Aligned_cols=62  Identities=21%  Similarity=0.413  Sum_probs=47.3

Q ss_pred             CCCCccccCCCCCCCCCCCccccccccccccC---------CCC---------CccccccccccccccCCCCCCCcccCC
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAHELRVIP---------RHP---------RYRTKLCQSYHQDGFCPYVYFFKIFHP   69 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~---------~~p---------~~kt~~C~~f~~~G~C~~G~~C~f~H~   69 (80)
                      ..+|+.|. +|.|...+.|..+|.....|-+.         ..|         ..-..+|..|...|+|--|-.|.-.|-
T Consensus       233 kticpkfl-ngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelgtscknqhi  311 (377)
T KOG1492|consen  233 KTICPKFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHI  311 (377)
T ss_pred             cccChHHh-cCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceecccccccccee
Confidence            46899997 79999999999999877655321         112         112367999999999999999997776


Q ss_pred             C
Q psy15067         70 I   70 (80)
Q Consensus        70 ~   70 (80)
                      .
T Consensus       312 l  312 (377)
T KOG1492|consen  312 L  312 (377)
T ss_pred             e
Confidence            4

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.62  E-value=0.00076  Score=46.81  Aligned_cols=29  Identities=34%  Similarity=0.738  Sum_probs=26.1

Q ss_pred             CCCCccccCCCCCCCCCCCcccccccccc
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAHELR   36 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~   36 (80)
                      ..+|+.|..+|.|-|||.|+|.|+.+++.
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhhh
Confidence            57899999999999999999999988654

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.17  E-value=0.0061  Score=43.91  Aligned_cols=56  Identities=25%  Similarity=0.487  Sum_probs=45.0

Q ss_pred             CCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccc--cccCCCCCCCcccCCCCC
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ--DGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~--~G~C~~G~~C~f~H~~~~   72 (80)
                      ...|+.|-..|.|..|..|.++|....         -....|..|..  .+.|++|..|++.|....
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~  191 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFCPLGASCKFSHTLKR  191 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCcc---------cccccccccCcccccccCCCCcccccccccc
Confidence            568999988899999999999997622         12356775543  799999999999999873

>KOG2185|consensus

Probab=96.06  E-value=0.0025  Score=48.04  Aligned_cols=26  Identities=19%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             ccccccccccccCCCCCCCcccCCCCC
Q psy15067         46 TKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus        46 t~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      ..+|+ |+..|.|+|+..|||.|+..-
T Consensus       140 MkpC~-ffLeg~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  140 MKPCK-FFLEGRCRFGENCRFSHGLDV  165 (486)
T ss_pred             hccch-HhhccccccCcccccccCccc
Confidence            47899 778999999999999999653

>KOG1813|consensus

Probab=95.40  E-value=0.0044  Score=44.91  Aligned_cols=28  Identities=36%  Similarity=0.704  Sum_probs=25.9

Q ss_pred             CCCCccccCCCCCCCCCCCccccccccc
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAHEL   35 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~   35 (80)
                      ..+|+.|-.+|.|-|||+|.|.|+...+
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhhc
Confidence            5789999999999999999999999876

>KOG1813|consensus

Probab=94.74  E-value=0.0092  Score=43.30  Aligned_cols=29  Identities=28%  Similarity=0.721  Sum_probs=25.5

Q ss_pred             cccccccccccccCCCCCCCcccCCCCCC
Q psy15067         45 RTKLCQSYHQDGFCPYVYFFKIFHPIPYY   73 (80)
Q Consensus        45 kt~~C~~f~~~G~C~~G~~C~f~H~~~~~   73 (80)
                      ...+|+.|..+|+|-||.+|.|+|+....
T Consensus       185 qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            34679999999999999999999997754

>KOG2494|consensus

Probab=94.67  E-value=0.013  Score=43.02  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=26.3

Q ss_pred             cccccccccccCCCCCC-CcccCCCCCCCCCCCC
Q psy15067         47 KLCQSYHQDGFCPYVYF-FKIFHPIPYYTTEAGT   79 (80)
Q Consensus        47 ~~C~~f~~~G~C~~G~~-C~f~H~~~~~~~~~~~   79 (80)
                      .+|+.|. .|.|.+|++ |+|+|.+......-|+
T Consensus        38 eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~~g~   70 (331)
T KOG2494|consen   38 EVCREFL-RNTCSRGDRECKFAHPPKNCQVSNGR   70 (331)
T ss_pred             HHHHHHH-hccccCCCccccccCCCCCCCccCCe
Confidence            7899775 789999999 9999998876555554

>KOG1039|consensus

Probab=93.56  E-value=0.028  Score=41.53  Aligned_cols=24  Identities=29%  Similarity=0.816  Sum_probs=20.6

Q ss_pred             cccccccccccCCCCCCCcccCCCC
Q psy15067         47 KLCQSYHQDGFCPYVYFFKIFHPIP   71 (80)
Q Consensus        47 ~~C~~f~~~G~C~~G~~C~f~H~~~   71 (80)
                      .+|+ |+..|+|.+|..|||.|+.+
T Consensus         9 tic~-~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICK-YYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhh-hcccccccccceeeeeccCc
Confidence            6888 66788999999999999877

>KOG1039|consensus

Probab=92.93  E-value=0.036  Score=40.90  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             CCCccccCCCCCCCCCCCccccccc
Q psy15067          9 PRPPDHDETGVCKFGTGCKFAHGAH   33 (80)
Q Consensus         9 ~lC~~f~~~g~C~~G~~C~faH~~~   33 (80)
                      .+|++|. .|.|+||+.|+|.|+..
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCc
Confidence            7899887 69999999999999888

>KOG4791|consensus

Probab=90.47  E-value=0.078  Score=41.15  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=37.5

Q ss_pred             CCCccccCCCCCCCCCCCccccccccccccC-----------------CCC----Ccccccccccccccc-CCCCCCCcc
Q psy15067          9 PRPPDHDETGVCKFGTGCKFAHGAHELRVIP-----------------RHP----RYRTKLCQSYHQDGF-CPYVYFFKI   66 (80)
Q Consensus         9 ~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~-----------------~~p----~~kt~~C~~f~~~G~-C~~G~~C~f   66 (80)
                      ..|-.|+ ..+|+++|.|-|.|....+....                 +|.    .....+|- |...+. |. .++|-|
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~k~C~YRHSe~~~kr~e~~CY-we~~p~gC~-k~~Cgf   80 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCRKVCRYRHSEIDKKRSEIPCY-WENQPTGCQ-KLNCGF   80 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhcCcchhhhhhhcCcccccccchhhHHhhhcCcccce-eecCCCccC-CCcccc
Confidence            4565454 56688888888888765543210                 111    12346786 666666 86 789999


Q ss_pred             cCCCCC
Q psy15067         67 FHPIPY   72 (80)
Q Consensus        67 ~H~~~~   72 (80)
                      -|..+.
T Consensus        81 RH~~pP   86 (667)
T KOG4791|consen   81 RHNRPP   86 (667)
T ss_pred             ccCCCc
Confidence            996533

>KOG1763|consensus

Probab=89.09  E-value=0.081  Score=38.66  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=25.1

Q ss_pred             ccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      .++.+|- |+..|.|.-|..|.|+|+....+
T Consensus        90 PKSvvCa-fFk~g~C~KG~kCKFsHdl~~~~  119 (343)
T KOG1763|consen   90 PKSVVCA-FFKQGTCTKGDKCKFSHDLAVER  119 (343)
T ss_pred             chHHHHH-HHhccCCCCCCcccccchHHHhh
Confidence            4678998 66789999999999999976543

>KOG4791|consensus

Probab=87.15  E-value=0.39  Score=37.45  Aligned_cols=27  Identities=15%  Similarity=0.329  Sum_probs=18.9

Q ss_pred             CCCCccccCCCCCCCCCCCcccccccccc
Q psy15067          8 APRPPDHDETGVCKFGTGCKFAHGAHELR   36 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~   36 (80)
                      ...|++|+..-.|+.  -|.|-|+.-.++
T Consensus        32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~k   58 (667)
T KOG4791|consen   32 ETVCTLWQEGRCCRK--VCRYRHSEIDKK   58 (667)
T ss_pred             cchhhhhhhcCcccc--cccchhhHHhhh
Confidence            456888876666765  788888765554

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=83.88  E-value=0.87  Score=21.01  Aligned_cols=20  Identities=35%  Similarity=0.637  Sum_probs=8.4

Q ss_pred             CCccccCCCCCCCCCCCcccc
Q psy15067         10 RPPDHDETGVCKFGTGCKFAH   30 (80)
Q Consensus        10 lC~~f~~~g~C~~G~~C~faH   30 (80)
                      +|++-...|.|.- +.|.|.|
T Consensus         2 lC~yEl~Gg~Cnd-~~C~~QH   21 (23)
T PF10650_consen    2 LCPYELTGGVCND-PDCEFQH   21 (23)
T ss_pred             CCccccCCCeeCC-CCCCccc
Confidence            4444333334443 2454444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		2e-12
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		8e-09

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 38/46 (82%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
          +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPY
Sbjct: 13 EESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 58

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
           E+G C++G  C+FAHG  ELR   RHP+Y+T+LC  +   G CPY
Sbjct: 19 SESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPY 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	5e-11

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 52.3 bits (125), Expect = 5e-11
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
          E+G C++G  C+FAHG  ELR   RHP+Y+T+LC  +   G CPY
Sbjct: 20 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPY 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.89
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.57
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.56
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.45
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.31
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.15
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.99
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.93
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.8
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.61
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.5
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	98.1
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.98
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.87
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.69
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.66
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.12
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	96.95
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.85
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	96.78
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.7
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	96.56
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.23
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	94.43
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	93.78
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	87.56

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.89  E-value=4.6e-24  Score=124.28  Aligned_cols=70  Identities=34%  Similarity=0.703  Sum_probs=33.6

Q ss_pred             CcCCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          3 QGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         3 ~~~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      +-.+++++|++|+..|.|++|++|+|+|+..|++....+|.+++.+|+.|.+.|.|++|.+|+|+|+.++
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            3468999999998889999999999999999999766677889999999999999999999999999875

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.57  E-value=1.4e-15  Score=92.71  Aligned_cols=53  Identities=23%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      ..++.+|++|+ .|.|++|++|+|+|+              +.+|+.|.+.|.|++|.+|+|+|+...
T Consensus        10 ~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           10 PKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             SCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            36899999996 799999999999998              358998878999999999999999653

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.7e-15  Score=88.48  Aligned_cols=61  Identities=21%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             cCCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCCC
Q psy15067          4 GEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTT   75 (80)
Q Consensus         4 ~~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~   75 (80)
                      ...++.+|++|+. |.|++|++|.|+|+....         ++.+|++|...|.|. |++|+|.|..+...+
T Consensus         6 ~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~   66 (77)
T 2d9n_A            6 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT---------KMPECYFYSKFGECS-NKECPFLHIDPESKI   66 (77)
T ss_dssp             SCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSSC
T ss_pred             CCCcceeCHhHcc-CcCCCCCCCCCccccccC---------cCCCCcccCCCCccC-CCCeeccCCCccccC
Confidence            4568999999985 999999999999997642         256899776669999 999999999876544

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.45  E-value=1.4e-14  Score=83.84  Aligned_cols=59  Identities=22%  Similarity=0.284  Sum_probs=47.7

Q ss_pred             CCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067          5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      ..++.+|++|+. |.|++|++|.|+|+....         ++.+|++|...|.|.+ ++|+|.|..+..+
T Consensus        13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k   71 (72)
T 2rhk_C           13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT---------KMSECYFYSKFGECSN-KECPFLHIDPESK   71 (72)
T ss_dssp             CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred             CCcCeeCHHHhc-CCCCCCCCCCCccccccc---------cCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence            356889999985 999999999999986532         3578996665599999 9999999987653

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.31  E-value=1.5e-13  Score=78.97  Aligned_cols=63  Identities=25%  Similarity=0.430  Sum_probs=49.3

Q ss_pred             CCCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067          7 LAPRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus         7 ~~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      +.++|+.|. .|.|..|+ .|+|+|+.++.....  ...++.+|..|. .|.|.+| .|+|+|+.+.++
T Consensus         5 k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~~--~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A            5 RLEVCREYQ-RGNCNRGENDCRFAHPADSTMIDT--NDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             EEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCBT--TTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred             cchhCHHHh-cCCCCCCCCCCCCccCcccccccc--cCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence            456899996 69999999 599999987654311  235678999654 6999999 999999987544

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=3.6e-12  Score=77.57  Aligned_cols=62  Identities=26%  Similarity=0.419  Sum_probs=48.7

Q ss_pred             CCCCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          6 ILAPRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      .+.++|++|+. |.|..|| .|+|+|+..+.....  ...++.+|.+| ..|.|.++ .|+|.|+...
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~~--~~~~~~vC~~f-lkG~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMIDT--SDNTVTVCMDY-IKGRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCCT--TTCEEEBCHHH-HHTCCCCT-TCCSBCCCHH
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccccc--cCCccccchhh-ccCCCCCC-CcCccCChHH
Confidence            34579999985 9999999 799999987664311  23467899944 67999999 9999999754

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.99  E-value=1.9e-10  Score=68.06  Aligned_cols=60  Identities=27%  Similarity=0.413  Sum_probs=47.2

Q ss_pred             CCCCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          6 ILAPRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      .+.++|+.|.. |.|..|| .|+|+|....+...    ..+..+|..| ..|.|.++ .|+|.|++..
T Consensus         7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~----~~~~~vC~df-lkG~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE----NGRVIACFDS-LKGRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE----TTEEECCHHH-HTTCCCCS-SCSSCCCCHH
T ss_pred             ccchhcHHHhc-CCCCCCCCCCCCcCCCcccccc----CCceeehhHh-hhccccCC-CcceeCChHH
Confidence            34678999986 9999997 99999997754321    1346789966 57999998 9999998754

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=5.8e-11  Score=68.16  Aligned_cols=30  Identities=37%  Similarity=0.566  Sum_probs=27.3

Q ss_pred             CCCCCccccCCCCCCCCCCCccccccccccc
Q psy15067          7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRV   37 (80)
Q Consensus         7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~   37 (80)
                      +.+||++| ..|.|+||++|+|||+.+||+.
T Consensus        19 k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRY-MNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence            56999999 4789999999999999999985

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.80  E-value=1.7e-09  Score=64.77  Aligned_cols=58  Identities=26%  Similarity=0.372  Sum_probs=46.3

Q ss_pred             CCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          8 APRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         8 ~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      .++|+.|.. |.|..|| .|+|+|........    ..+..+|..| ..|.|.++ .|+|.|.+..
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~----~~~~~vC~df-lkG~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE----NGRVIACFDS-LKGRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB----TTBEEBCHHH-HHTCCCCT-TCCSBCCCHH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCcccccc----CCceeeehhh-hhCcCCCC-CcceecCHHH
Confidence            679999985 9999998 99999987754321    1346789966 58999988 9999999754

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.61  E-value=2.2e-08  Score=57.45  Aligned_cols=34  Identities=29%  Similarity=0.613  Sum_probs=30.3

Q ss_pred             CCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067         41 HPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus        41 ~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      ++.+++.+|+.|...|.|++|++|+|+|+.++++
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~   40 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   40 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence            3578999999887899999999999999998765

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=6.5e-09  Score=59.58  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             CCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067         42 PRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus        42 p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      |..++.+|+.| ..|.|+||.+|.|+|+.++++
T Consensus        16 P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr   47 (69)
T 2d9m_A           16 PTGYFSICDRY-MNGTCPEGNSCKFAHGNAELH   47 (69)
T ss_dssp             CCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHH
T ss_pred             CCCCcccCccc-CcCCCCCCCccCCcCCHHHHh
Confidence            44567999988 789999999999999987654

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=98.10  E-value=8.2e-07  Score=47.69  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=27.5

Q ss_pred             ccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      ..+.+|..|.+.|+||+|..|.+.|+++...
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~   48 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISGPS   48 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCCCC
Confidence            3578999999999999999999999998643

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.98  E-value=3.5e-06  Score=50.83  Aligned_cols=25  Identities=28%  Similarity=0.580  Sum_probs=22.4

Q ss_pred             ccccccccccccccCCCCCCCcccCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHP   69 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~   69 (80)
                      .++.+|+.| ..|.|.+|+.|+|+|+
T Consensus        11 ~k~~lC~~f-~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFY-ITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred             CCCccCccc-ccCcCCCCCCCCCCCC
Confidence            478999966 6899999999999998

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.87  E-value=8.2e-06  Score=47.00  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=26.0

Q ss_pred             CccccccccccccccCCCCCCCcccCCCCCCCC
Q psy15067         43 RYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTT   75 (80)
Q Consensus        43 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~   75 (80)
                      ..++.+|+.|. .|.|.+|+.|+|+|+....++
T Consensus         7 ~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~~~   38 (77)
T 2d9n_A            7 GEKTVVCKHWL-RGLCKKGDQCEFLHEYDMTKM   38 (77)
T ss_dssp             CCTTSBCHHHH-TTCCSCTTSSSSBCSCCTTTS
T ss_pred             CCcceeCHhHc-cCcCCCCCCCCCccccccCcC
Confidence            45789999555 599999999999999876543

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.69  E-value=1.2e-05  Score=46.01  Aligned_cols=32  Identities=16%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             ccccccccccccccCCCCCCCcccCCCCCCCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTE   76 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~   76 (80)
                      .++.+|+.| ..|.|.+|+.|+|+|+....+++
T Consensus        14 ~k~~vCk~f-l~G~C~~G~~C~fsH~~~~~~~~   45 (72)
T 2rhk_C           14 EKTVVCKHW-LRGLCKKGDQCEFLHEYDMTKMS   45 (72)
T ss_dssp             CCCSBCHHH-HTTCCCCGGGSSSBCSCCTTSCC
T ss_pred             CcCeeCHHH-hcCCCCCCCCCCCccccccccCC
Confidence            467899955 55999999999999998765443

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.66  E-value=7.8e-06  Score=43.85  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             CCCCCCccccCCCCCCCCCCCccccccc
Q psy15067          6 ILAPRPPDHDETGVCKFGTGCKFAHGAH   33 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~~C~faH~~~   33 (80)
                      ..+.+|..|...|.|+.|.+|.++|++.
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            5789999999999999999999999976

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.12  E-value=0.00015  Score=40.89  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=22.8

Q ss_pred             cccccccccccccCCCCC-CCcccCCCCC
Q psy15067         45 RTKLCQSYHQDGFCPYVY-FFKIFHPIPY   72 (80)
Q Consensus        45 kt~~C~~f~~~G~C~~G~-~C~f~H~~~~   72 (80)
                      +..+|+.| +.|.|.+|+ .|+|+|+...
T Consensus         5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~   32 (70)
T 3d2q_A            5 RLEVCREY-QRGNCNRGENDCRFAHPADS   32 (70)
T ss_dssp             EEEBCHHH-HTTCCSSCTTTCSSBCCCTT
T ss_pred             cchhCHHH-hcCCCCCCCCCCCCccCccc
Confidence            45799966 789999999 5999998764

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=96.95  E-value=0.00033  Score=41.00  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=22.8

Q ss_pred             cccccccccccccCCCCC-CCcccCCCCC
Q psy15067         45 RTKLCQSYHQDGFCPYVY-FFKIFHPIPY   72 (80)
Q Consensus        45 kt~~C~~f~~~G~C~~G~-~C~f~H~~~~   72 (80)
                      +..+|+.|.+ |.|.+|+ .|+|+|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~   35 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKS   35 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence            4578997765 9999996 9999999864

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.85  E-value=0.00058  Score=46.78  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=19.0

Q ss_pred             CCCccccCCCCCC----CCCCCcccccccc
Q psy15067          9 PRPPDHDETGVCK----FGTGCKFAHGAHE   34 (80)
Q Consensus         9 ~lC~~f~~~g~C~----~G~~C~faH~~~e   34 (80)
                      -||+.|+. |.|+    .+..|+|+|++..
T Consensus        90 HLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s  118 (229)
T 3u9g_A           90 HLCKLNLL-GRCHYAQSQRNLCKYSHDVLS  118 (229)
T ss_dssp             CCCHHHHT-TCCGGGTCCSSCCSSCSCTTC
T ss_pred             eechhhhc-CcCCcccCCCCCcccccccCc
Confidence            47888874 8993    3467999998864

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=96.78  E-value=0.00052  Score=40.70  Aligned_cols=28  Identities=21%  Similarity=0.458  Sum_probs=23.5

Q ss_pred             cccccccccccccCCCCC-CCcccCCCCCC
Q psy15067         45 RTKLCQSYHQDGFCPYVY-FFKIFHPIPYY   73 (80)
Q Consensus        45 kt~~C~~f~~~G~C~~G~-~C~f~H~~~~~   73 (80)
                      +..+|+.|.+ |.|.+|+ .|+|+|+....
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~   44 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSC   44 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence            4578997765 9999998 99999998753

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.70  E-value=0.0012  Score=45.14  Aligned_cols=47  Identities=19%  Similarity=0.307  Sum_probs=39.5

Q ss_pred             CCCCCCccccCC----CCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067          6 ILAPRPPDHDET----GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus         6 ~~~~lC~~f~~~----g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      .+.++|.+| +.    |.|.++++|...|                 +|+ ++..|.|.+ ..|.-+|+...
T Consensus       149 lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------IC~-~Fl~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          149 FLPEICKSY-KGEGRKQTCGQPQPCERLH-----------------ICE-HFTRGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             GSCCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------SCH-HHHTTCCCC-SSCSSCCCTTS
T ss_pred             cCchHHHHh-CCCCCCCcCCCCCCCccee-----------------ccc-hhhcCCcCC-CCccCccCccC
Confidence            368999999 52    6899999999888                 898 567899999 89999999754

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.56  E-value=0.00024  Score=42.71  Aligned_cols=28  Identities=18%  Similarity=0.413  Sum_probs=23.5

Q ss_pred             ccccccccccccccCCCCC-CCcccCCCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVY-FFKIFHPIPY   72 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~-~C~f~H~~~~   72 (80)
                      .+..+|+.|. .|.|.+|+ .|+|+|+...
T Consensus        18 ~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~   46 (98)
T 2e5s_A           18 DKLEVCREFQ-RGNCARGETDCRFAHPADS   46 (98)
T ss_dssp             SEEEBCSHHH-HTCCSSHHHHCSSBCCSSC
T ss_pred             hhhhhhHHHh-cCcCCCCCCCCCCcCCchh
Confidence            4668999665 59999999 7999999865

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.23  E-value=0.00073  Score=39.42  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=20.0

Q ss_pred             CCcCCCCCCCccccCCCCCCCCCCCccccccc
Q psy15067          2 LQGEILAPRPPDHDETGVCKFGTGCKFAHGAH   33 (80)
Q Consensus         2 ~~~~~~~~lC~~f~~~g~C~~G~~C~faH~~~   33 (80)
                      ++-|...++|++|..   |.. +.|.|.|...
T Consensus         3 ~~~~~~~e~CKf~~~---Ctn-~~C~f~Hp~~   30 (80)
T 2lhn_A            3 LGSEKSLEQCKFGTH---CTN-KRCKYRHARS   30 (80)
Confidence            344667788977652   888 8999999643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=94.43  E-value=0.0069  Score=41.37  Aligned_cols=27  Identities=19%  Similarity=0.342  Sum_probs=22.4

Q ss_pred             CCCCCccccCCCCCCCCCCCcccccccc
Q psy15067          7 LAPRPPDHDETGVCKFGTGCKFAHGAHE   34 (80)
Q Consensus         7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e   34 (80)
                      ...+|.+|.. |.|+.|+.|.|.|....
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence            3568998975 99999999999997543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=93.78  E-value=0.012  Score=40.11  Aligned_cols=25  Identities=24%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             cccccccccccCCCCCCCcccCCCCC
Q psy15067         47 KLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus        47 ~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      ..|. |++.|.|++|..|.|.|..+.
T Consensus        71 ~~C~-ffakG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCL-FFAKGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCH-HHHTTCCSCGGGCSSBBSCCC
T ss_pred             eEcC-ccccCCCCCCCCCCccCCCCC
Confidence            5899 556799999999999998764

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=87.56  E-value=0.13  Score=34.98  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=0.0

Q ss_pred             cccccccccccccCCCCCCCcccCCCCCCC
Q psy15067         45 RTKLCQSYHQDGFCPYVYFFKIFHPIPYYT   74 (80)
Q Consensus        45 kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~   74 (80)
                      +..+|+ |-.  .|.||.+|+|-|.+....
T Consensus       191 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~  217 (223)
T 3v33_A          191 RKQPCP-YGR--KCTYGIKCRFFHPERPSC  217 (223)
T ss_dssp             ------------------------------
T ss_pred             CCCCCC-CCc--ccccCCcceecCCccCCc
Confidence            446798 433  499999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	2e-06
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	9e-06
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	1e-05
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-06
 Identities = 13/21 (61%), Positives = 19/21 (90%)

Query: 40 RHPRYRTKLCQSYHQDGFCPY 60
          RHP+Y+T+LC+++H  GFCPY
Sbjct: 2  RHPKYKTELCRTFHTIGFCPY 22

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.4 bits (69), Expect = 0.002
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 16 ETGVCKFGTGCKFAHGAHE 34
            G C +G  C F H A E
Sbjct: 16 TIGFCPYGPRCHFIHNADE 34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (85), Expect = 9e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 16 ETGVCKFGTGCKFAHGAHELR 36
          E+G C++G  C+FAHG  ELR
Sbjct: 17 ESGRCRYGAKCQFAHGLGELR 37

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.3 bits (71), Expect = 0.001
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 40 RHPRYRTKLCQSYHQDGFCPY 60
             RY+T+LC++Y + G C Y
Sbjct: 3  TSSRYKTELCRTYSESGRCRY 23

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-05
 Identities = 14/21 (66%), Positives = 17/21 (80%)

Query: 16 ETGVCKFGTGCKFAHGAHELR 36
          E+G CK+G  C+FAHG HELR
Sbjct: 14 ESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (71), Expect = 0.001
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 43 RYRTKLCQSYHQDGFCPY 60
          RY+T+LC+ + + G C Y
Sbjct: 3  RYKTELCRPFEESGTCKY 20

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.52
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.49
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.41
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.4
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.3
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.26
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.92
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.65
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.61
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	97.6
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.08
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	95.32

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=3.8e-15  Score=76.41  Aligned_cols=35  Identities=34%  Similarity=0.655  Sum_probs=31.6

Q ss_pred             CcCCCCCCCccccCCCCCCCCCCCccccccccccc
Q psy15067          3 QGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRV   37 (80)
Q Consensus         3 ~~~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~   37 (80)
                      ...|||++|++|...|.|++|++|+|||+.+||+.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   38 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ   38 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcC
Confidence            45789999999998899999999999999999985

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-15  Score=76.74  Aligned_cols=34  Identities=41%  Similarity=0.776  Sum_probs=30.2

Q ss_pred             cCCCCCCCccccCCCCCCCCCCCccccccccccc
Q psy15067          4 GEILAPRPPDHDETGVCKFGTGCKFAHGAHELRV   37 (80)
Q Consensus         4 ~~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~   37 (80)
                      -+|||++|+.|...|.|++|++|+|||+.+|||+
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            4789999999988899999999999999999884

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-14  Score=71.71  Aligned_cols=33  Identities=42%  Similarity=0.955  Sum_probs=23.7

Q ss_pred             CCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067         40 RHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY   72 (80)
Q Consensus        40 ~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~   72 (80)
                      ++|+|||.+|+.|...|.|+||++|+|+|+.++
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            356777777777777777777777777777653

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.7e-15  Score=72.46  Aligned_cols=30  Identities=27%  Similarity=0.572  Sum_probs=28.2

Q ss_pred             CCCCCCCccccCCCCCCCCCCCcccccccc
Q psy15067          5 EILAPRPPDHDETGVCKFGTGCKFAHGAHE   34 (80)
Q Consensus         5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e   34 (80)
                      +|||+||+.|...|.|+||++|+|||+.+|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            589999999998999999999999999875

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.9e-13  Score=68.34  Aligned_cols=36  Identities=28%  Similarity=0.579  Sum_probs=32.6

Q ss_pred             CCCccccccccccccccCCCCCCCcccCCCCCCCCC
Q psy15067         41 HPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTE   76 (80)
Q Consensus        41 ~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~   76 (80)
                      +++|||++|+.|...|.|++|++|+|+|++++++.+
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            467999999999999999999999999999998743

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-13  Score=68.29  Aligned_cols=34  Identities=26%  Similarity=0.591  Sum_probs=31.3

Q ss_pred             CCccccccccccccccCCCCCCCcccCCCCCCCC
Q psy15067         42 PRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTT   75 (80)
Q Consensus        42 p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~   75 (80)
                      .+|||++|+.|...|.|++|++|+|+|+.+++++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            4689999999998999999999999999999875

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.5e-06  Score=39.45  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=16.4

Q ss_pred             ccccccccccccCCCCCCCcccCC
Q psy15067         46 TKLCQSYHQDGFCPYVYFFKIFHP   69 (80)
Q Consensus        46 t~~C~~f~~~G~C~~G~~C~f~H~   69 (80)
                      ..+|+ |..+|+|..|+.|.|.|+
T Consensus         6 kelCK-fYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           6 RELCK-FYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CSBCT-TTTTTCCSCSTTCSSBSS
T ss_pred             hhhhh-hheeeeecCCcCcccccC
Confidence            46777 666777777777777775

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.1e-06  Score=43.87  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             ccccccccccCCCCCCCcccCCCC
Q psy15067         48 LCQSYHQDGFCPYVYFFKIFHPIP   71 (80)
Q Consensus        48 ~C~~f~~~G~C~~G~~C~f~H~~~   71 (80)
                      +|+.|++.+.|-.|+.|+|+|.+-
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcceeecCCcccCCCcccccCCcc
Confidence            799888888999999999999643

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2e-05  Score=36.30  Aligned_cols=26  Identities=23%  Similarity=0.306  Sum_probs=22.1

Q ss_pred             CCCCCCccccCCCCCCCCCCCcccccc
Q psy15067          6 ILAPRPPDHDETGVCKFGTGCKFAHGA   32 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~~C~faH~~   32 (80)
                      -+.++|+.|. .|.|..|++|.|-|+.
T Consensus         4 kkkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhhe-eeeecCCcCcccccCC
Confidence            4678998765 7999999999999973

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=5.4e-06  Score=40.34  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             ccccccccccccccCCCCCCCcccCCC
Q psy15067         44 YRTKLCQSYHQDGFCPYVYFFKIFHPI   70 (80)
Q Consensus        44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~   70 (80)
                      ..+.+|..|.+.|+||.|..|...|++
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            357899999999999999999999975

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=6e-05  Score=39.90  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             CCccccCCCCCCCCCCCccccc
Q psy15067         10 RPPDHDETGVCKFGTGCKFAHG   31 (80)
Q Consensus        10 lC~~f~~~g~C~~G~~C~faH~   31 (80)
                      +|+.|...+.|--||+|+|+|+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            5899988889999999999994

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0016  Score=31.27  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             CCCCCCccccCCCCCCCCCCCcccccc
Q psy15067          6 ILAPRPPDHDETGVCKFGTGCKFAHGA   32 (80)
Q Consensus         6 ~~~~lC~~f~~~g~C~~G~~C~faH~~   32 (80)
                      -.+.+|..|...|.|+.|.+|.-+|++
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            457899999999999999999999984