Psyllid ID: psy1506

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWVEEIL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEcccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHEEEHHHHHccccEEEEcccccccccccccHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEcccEEEEccHHHHc
Coil and Loop (DISEMBL)
mtgksscqlCFEAVYKNadiyllddplsavdmHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNnvsktsgwveeil
Flexible Loop (DISEMBL)
MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLnnvsktsgwveeil
Low Complexity Region (SEG)
MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWVEEIL
Disordered region (IsUnstruct)
******CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWV****
Disordered Region (DISOPRED)
*TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWVEEIL
Disordered Region (DISEMBL)
MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWVEEIL
Disordered Region (DISPRO)
***KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWVE*IL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTSGWVEEIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q7FB56	1053	Putative ABC transporter	yes	N/A	0.870	0.070	0.56	3e-17
Q96J66	1382	ATP-binding cassette sub-	yes	N/A	0.705	0.043	0.645	3e-17
P33527	1531	Multidrug resistance-asso	no	N/A	0.729	0.040	0.640	3e-17
Q9M1C7	1506	ABC transporter C family	no	N/A	0.870	0.049	0.56	3e-17
P91660	1290	Probable multidrug resist	no	N/A	0.717	0.047	0.622	9e-17
Q6Y306	1366	Multidrug resistance-asso	yes	N/A	0.729	0.045	0.612	9e-17
Q864R9	1531	Multidrug resistance-asso	N/A	N/A	0.729	0.040	0.640	1e-16
Q80WJ6	1366	Multidrug resistance-asso	yes	N/A	0.729	0.045	0.612	1e-16
O35379	1528	Multidrug resistance-asso	no	N/A	0.729	0.040	0.609	3e-16
Q8CG09	1532	Multidrug resistance-asso	no	N/A	0.729	0.040	0.625	4e-16

>sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVY+NADIYLLDDP SAVD H G+ LFEDC+ G LKDKT + VTHQ+++L   D I+ +
Sbjct: 351 RAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVM 410

Query: 72  NNVS-KTSGWVEEIL 85
            N     +G  EE+L
Sbjct: 411 QNGRVMQAGKFEELL 425

Pump for glutathione S-conjugates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4

>sp|Q96J66|ABCCB_HUMAN ATP-binding cassette sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 46/62 (74%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVY +  IYLLDDPLSAVD HVGKH+FE+CI   L+ KT +LVTHQLQYL    QI+ L
Sbjct: 646 RAVYSDRQIYLLDDPLSAVDAHVGKHIFEECIKKTLRGKTVVLVTHQLQYLEFCGQIILL 705

Query: 72  NN 73
            N
Sbjct: 706 EN 707

Participates in physiological processes involving bile acids, conjugated steroids and cyclic nucleotides. Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependent uptake of a range of physiological and synthetic lipophilic anions, including the glutathione S-conjugates leukotriene C4 and dinitrophenyl S-glutathione, steroid sulfates such as dehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as estradiol 17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, and methotrexate. Probably functions to secrete earwax.

Homo sapiens (taxid: 9606)

>sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIV 69
            AVY NADIYL DDPLSAVD HVGKH+FE+ I   G LK+KTRILVTH + YL  VD I+
Sbjct: 780 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVII 839

Query: 70  FLNN 73
            ++ 
Sbjct: 840 VMSG 843

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Homo sapiens (taxid: 9606)

>sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVY+NADIYLLDDP SAVD H G+ LFEDC+ G LKDKT + VTHQ+++L   D I+ +
Sbjct: 767 RAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVM 826

Query: 72  NNVS-KTSGWVEEIL 85
            N     +G  EE+L
Sbjct: 827 QNGRVMQAGKFEELL 841

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P91660|L259_DROME Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           +VY+ A IYLLDDPLSAVD  V +HLF+ C+ G L+  T +LVTHQ Q+L HVDQIV L 
Sbjct: 554 SVYRKASIYLLDDPLSAVDASVARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQIVILA 613

Query: 73  N 73
           N
Sbjct: 614 N 614

Vital for development.

Drosophila melanogaster (taxid: 7227)

>sp|Q6Y306|MRP9_RAT Multidrug resistance-associated protein 9 OS=Rattus norvegicus GN=Abcc12 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVY N  +YLLDDPLSAVD HVGKH+FE+CI   LK KT +LVTHQLQ+L   D+++ L
Sbjct: 616 RAVYANRQLYLLDDPLSAVDAHVGKHVFEECIKKTLKGKTVVLVTHQLQFLESCDEVILL 675

Query: 72  NN 73
            +
Sbjct: 676 ED 677

Probable transporter.

Rattus norvegicus (taxid: 10116)

>sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIV 69
            AVY NADIYL DDPLSAVD HVGKH+FE+ I   G LK+KTRILVTH + YL  VD I+
Sbjct: 780 RAVYCNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVII 839

Query: 70  FLNN 73
            ++ 
Sbjct: 840 VMSG 843

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Macaca fascicularis (taxid: 9541)

>sp|Q80WJ6|MRP9_MOUSE Multidrug resistance-associated protein 9 OS=Mus musculus GN=Abcc12 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVY N  +YLLDDPLSAVD HVGKH+FE+CI   LK KT +LVTHQLQ+L   D+++ L
Sbjct: 616 RAVYANRQLYLLDDPLSAVDAHVGKHVFEECIKKTLKGKTVVLVTHQLQFLESCDEVILL 675

Query: 72  NN 73
            +
Sbjct: 676 ED 677

Probable transporter.

Mus musculus (taxid: 10090)

>sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 2/64 (3%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIV 69
            AVY N+DIYL DDPLSAVD HVGKH+FE  +   G LK+KTRILVTH + YL  VD I+
Sbjct: 780 RAVYSNSDIYLFDDPLSAVDAHVGKHIFEKVVGPMGLLKNKTRILVTHGISYLPQVDVII 839

Query: 70  FLNN 73
            ++ 
Sbjct: 840 VMSG 843

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Mus musculus (taxid: 10090)

>sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIV 69
            AVY N+DIYLLDDPLSAVD HVGKH+FE  +   G LK+KTRILVTH + YL  VD I+
Sbjct: 781 RAVYCNSDIYLLDDPLSAVDAHVGKHIFEKVVGPMGLLKNKTRILVTHGISYLPQVDVII 840

Query: 70  FLNN 73
            ++ 
Sbjct: 841 VMSG 844

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
270006563	1317	hypothetical protein TcasGA2_TC010434 [T	0.847	0.054	0.684	1e-21
357626233	1174	hypothetical protein KGM_19552 [Danaus p	0.741	0.053	0.730	9e-21
357612899	979	putative ATP-dependent bile acid permeas	0.741	0.064	0.730	9e-21
328699977	1347	PREDICTED: probable multidrug resistance	0.752	0.047	0.734	2e-20
328706261	1349	PREDICTED: probable multidrug resistance	0.729	0.045	0.758	2e-20
270007709	1341	hypothetical protein TcasGA2_TC014403 [T	0.788	0.049	0.666	3e-20
307195368	1124	Multidrug resistance-associated protein	0.717	0.054	0.737	3e-20
328699975	1351	PREDICTED: probable multidrug resistance	0.752	0.047	0.718	3e-20
242005590	1146	predicted protein [Pediculus humanus cor	0.729	0.054	0.758	4e-20
328724603	1357	PREDICTED: probable multidrug resistance	0.752	0.047	0.734	5e-20

>gi|270006563|gb|EFA03011.1| hypothetical protein TcasGA2_TC010434 [Tribolium castaneum]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/73 (68%), Positives = 61/73 (83%), Gaps = 1/73 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK ADIYLLDDPLSAVD HVGK LFE+CI+G+LK+KT IL+THQLQYL  VDQI++L+
Sbjct: 580 AVYKQADIYLLDDPLSAVDTHVGKQLFENCIAGYLKNKTVILITHQLQYLKEVDQIIYLH 639

Query: 73  N-VSKTSGWVEEI 84
           + V K  G  +E+
Sbjct: 640 DGVVKAQGSFKEL 652

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626233|gb|EHJ76393.1| hypothetical protein KGM_19552 [Danaus plexippus]

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 53/63 (84%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK ADIYLLDDPLSAVD HVG+HLFE C+ G+LK+ TR+LVTHQLQ+L  VDQI+ L 
Sbjct: 390 AVYKRADIYLLDDPLSAVDAHVGRHLFESCVVGYLKNTTRVLVTHQLQFLRDVDQIIILK 449

Query: 73  NVS 75
           N S
Sbjct: 450 NGS 452

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612899|gb|EHJ68225.1| putative ATP-dependent bile acid permease [Danaus plexippus]

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 53/63 (84%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK ADIYLLDDPLSAVD HVG+HLFE C+ G+LK+ TR+LVTHQLQ+L  VDQI+ L 
Sbjct: 564 AVYKRADIYLLDDPLSAVDAHVGRHLFESCVVGYLKNTTRVLVTHQLQFLRDVDQIIILK 623

Query: 73  NVS 75
           N S
Sbjct: 624 NGS 626

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699977|ref|XP_003241113.1| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 54/64 (84%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK ADIYLLDDPLSAVD HVGKHLFE CI G+LK+KT IL+THQ+QYL+ VDQIV +
Sbjct: 582 RAVYKQADIYLLDDPLSAVDTHVGKHLFEKCIKGYLKNKTCILITHQIQYLSSVDQIVLM 641

Query: 72  NNVS 75
            N +
Sbjct: 642 ENAN 645

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706261|ref|XP_001943056.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK ADIYLLDDPLSAVD+ VGKHLFE CI G+LK+KTRIL+THQ+QYL+ VDQIV +
Sbjct: 584 RAVYKQADIYLLDDPLSAVDVKVGKHLFEKCILGYLKEKTRILITHQVQYLSDVDQIVLM 643

Query: 72  NN 73
           +N
Sbjct: 644 DN 645

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007709|gb|EFA04157.1| hypothetical protein TcasGA2_TC014403 [Tribolium castaneum]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 56/72 (77%), Gaps = 5/72 (6%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVY++ADIYL DDPLSAVD HVGKHLF +CI  +LKDKTR+LVTHQLQ+L   D I+ LN
Sbjct: 550 AVYRDADIYLFDDPLSAVDAHVGKHLFNECIVKYLKDKTRVLVTHQLQFLRQADLIIVLN 609

Query: 73  NVSKTSGWVEEI 84
           N     G VE+I
Sbjct: 610 N-----GQVEKI 616

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195368|gb|EFN77286.1| Multidrug resistance-associated protein 4 [Harpegnathos saltator]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/61 (73%), Positives = 51/61 (83%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVY+NADIYL DDPLSAVD HVG  LF++CIS FL+DKTRILVTHQLQYL   D ++ LN
Sbjct: 509 AVYRNADIYLFDDPLSAVDTHVGAQLFDECISDFLRDKTRILVTHQLQYLKQCDYVIILN 568

Query: 73  N 73
           N
Sbjct: 569 N 569

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699975|ref|XP_001948798.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 54/64 (84%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            A+YK ADIYLLDDPLSAVD HVGKHLFE CI G+LK+KT IL+THQ+QYL+ VDQIV +
Sbjct: 580 RAIYKQADIYLLDDPLSAVDTHVGKHLFEKCIKGYLKNKTCILITHQIQYLSSVDQIVLM 639

Query: 72  NNVS 75
            N +
Sbjct: 640 ENAN 643

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005590|ref|XP_002423647.1| predicted protein [Pediculus humanus corporis] gi|212506807|gb|EEB10909.1| predicted protein [Pediculus humanus corporis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 51/62 (82%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVY+ ADIYLLDDPLSAVD HVGKHL EDCI GFLK+KT IL THQLQYLN VD I+  
Sbjct: 559 RAVYREADIYLLDDPLSAVDAHVGKHLMEDCIVGFLKNKTVILATHQLQYLNMVDNIIIF 618

Query: 72  NN 73
           +N
Sbjct: 619 DN 620

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724603|ref|XP_001951988.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Acyrthosiphon pisum]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 53/64 (82%)

Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK ADIYLLDDPLSAVD HVGKHLFE CI G+LK+KT IL+THQLQYL  VD+IV +
Sbjct: 586 RAVYKQADIYLLDDPLSAVDTHVGKHLFEKCIKGYLKEKTCILITHQLQYLPSVDRIVLM 645

Query: 72  NNVS 75
            N +
Sbjct: 646 ENAN 649

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
FB|FBgn0032908	1225	CG9270 [Drosophila melanogaste	0.847	0.058	0.64	2.5e-18
FB|FBgn0051793	1307	CG31793 [Drosophila melanogast	0.988	0.064	0.522	8.5e-17
FB|FBgn0038740	1362	CG4562 [Drosophila melanogaste	0.705	0.044	0.633	8.6e-17
FB|FBgn0032026	1355	CG7627 [Drosophila melanogaste	0.705	0.044	0.616	1.1e-16
ZFIN|ZDB-GENE-030616-511	1327	abcc4 "ATP-binding cassette, s	0.694	0.044	0.711	1.8e-16
ZFIN|ZDB-GENE-050517-25	1368	abcc12 "ATP-binding cassette,	0.717	0.044	0.672	2.4e-16
UNIPROTKB|J9P6G2	1205	ABCC11 "Uncharacterized protei	0.717	0.050	0.672	4.3e-16
FB|FBgn0263316	1316	Mrp4 "Multidrug resistance pro	0.705	0.045	0.633	4.3e-16
UNIPROTKB|E2RBC4	1387	ABCC11 "Uncharacterized protei	0.717	0.043	0.672	5.1e-16
UNIPROTKB|F5H410	755	ABCC11 "ATP-binding cassette s	0.717	0.080	0.655	7.4e-16

FB|FBgn0032908 CG9270 [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 48/75 (64%), Positives = 57/75 (76%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY+ AD YLLDDPLSAVD HVG+HLFE+C+ GFL+DK  ILVTHQLQ+L H D IV ++
Sbjct:   482 AVYRQADTYLLDDPLSAVDTHVGRHLFEECMRGFLRDKLVILVTHQLQFLEHADLIVIMD 541

Query:    73 NVSKTS--GWVEEIL 85
                K S  G  EE+L
Sbjct:   542 K-GKISAVGTYEEML 555

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0051793 CG31793 [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:     1 MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
             ++G    ++C   AVY+ AD+YLLDDPLSAVD HVG+HLF++C+ GFL  +  ILVTHQL
Sbjct:   558 LSGGQRARICLARAVYRRADVYLLDDPLSAVDTHVGRHLFDECMRGFLGKQLVILVTHQL 617

Query:    60 QYLNHVDQIVFLN--NVSKTSGWVEEIL 85
             Q+L   D IV ++  +VS   G  EE+L
Sbjct:   618 QFLEDADLIVIMDKGHVS-ACGTYEEML 644

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0038740 CG4562 [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY+ ADIYLLDDPLSAVD HVG+HLF+ C+ GFL+++  +LVTHQLQ+L   D IV ++
Sbjct:   581 AVYRKADIYLLDDPLSAVDTHVGRHLFDQCMRGFLREEIVLLVTHQLQFLEQADVIVIMD 640

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0032026 CG7627 [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY+   IYLLDDPLSAVD HV +HLFE C+ G+L+++  IL THQLQ+L H DQIV ++
Sbjct:   583 AVYRETSIYLLDDPLSAVDTHVARHLFEQCMRGYLRERIVILATHQLQFLQHADQIVIMD 642

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042060 "wound healing" evidence=IMP

ZFIN|ZDB-GENE-030616-511 abcc4 "ATP-binding cassette, sub-family C (CFTR/MRP), member 4" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 42/59 (71%), Positives = 48/59 (81%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
             AVY++ADIYLLDDPLSAVD  V +HLFE C+ G LKDK RILVTHQLQYL   +QI+ L
Sbjct:   550 AVYQDADIYLLDDPLSAVDAEVSRHLFEQCVCGILKDKPRILVTHQLQYLKAANQILVL 608

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-050517-25 abcc12 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" [Danio rerio (taxid:7955)]

 Score = 217 (81.4 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 41/61 (67%), Positives = 49/61 (80%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY N DI+LLDDPLSAVD HVGKH+FE+CI   LK K+ ILVTHQLQYL   D+++ L+
Sbjct:   615 AVYSNRDIFLLDDPLSAVDAHVGKHIFEECIKKELKGKSVILVTHQLQYLEFCDEVMLLD 674

Query:    73 N 73
             N
Sbjct:   675 N 675

GO:0016887 "ATPase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P6G2 ABCC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 214 (80.4 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 41/61 (67%), Positives = 48/61 (78%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY + ++YLLDDPLSAVD HVGKH+FE+CI   L  KT ILVTHQLQYL   DQI+FL 
Sbjct:   469 AVYSDRELYLLDDPLSAVDTHVGKHIFEECIKKMLSGKTIILVTHQLQYLALCDQIIFLE 528

Query:    73 N 73
             +
Sbjct:   529 D 529

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0263316 Mrp4 "Multidrug resistance protein 4 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY+ ADIYLLDDPLSAVD HVG+HLF+ C+ G+L+ +  ILVTHQLQ+L   D IV ++
Sbjct:   560 AVYRRADIYLLDDPLSAVDTHVGRHLFDQCMRGYLRSELVILVTHQLQFLEQADLIVIMD 619

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034059 "response to anoxia" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

UNIPROTKB|E2RBC4 ABCC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 214 (80.4 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 41/61 (67%), Positives = 48/61 (78%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY + ++YLLDDPLSAVD HVGKH+FE+CI   L  KT ILVTHQLQYL   DQI+FL 
Sbjct:   648 AVYSDRELYLLDDPLSAVDTHVGKHIFEECIKKMLSGKTIILVTHQLQYLALCDQIIFLE 707

Query:    73 N 73
             +
Sbjct:   708 D 708

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F5H410 ABCC11 "ATP-binding cassette sub-family C member 11" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query:    13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
             AVY +  IYLLDDPLSAVD HVGKH+FE+CI   L+ KT +LVTHQLQYL    QI+ L 
Sbjct:   647 AVYSDRQIYLLDDPLSAVDAHVGKHIFEECIKKTLRGKTVVLVTHQLQYLEFCGQIILLE 706

Query:    73 N 73
             N
Sbjct:   707 N 707

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80WJ6	MRP9_MOUSE	No assigned EC number	0.6129	0.7294	0.0453	yes	N/A
Q6Y306	MRP9_RAT	No assigned EC number	0.6129	0.7294	0.0453	yes	N/A
Q54VJ0	ABCC2_DICDI	No assigned EC number	0.5068	0.8588	0.0527	yes	N/A
Q96J66	ABCCB_HUMAN	No assigned EC number	0.6451	0.7058	0.0434	yes	N/A
Q7FB56	AB15C_ARATH	3, ., 6, ., 3, ., 4, 4	0.56	0.8705	0.0702	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-35
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	3e-24
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-22
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-22
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-18
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	2e-15
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-15
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-15
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-14
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-09
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-08
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-08
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	6e-08
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	6e-08
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-07
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-06
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-06
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-06
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	4e-06
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-06
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-06
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	8e-06
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-05
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	3e-05
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-05
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	5e-05
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	6e-05
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-04
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-04
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-04
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	2e-04
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-04
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-04
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-04
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	3e-04
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	0.001
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	0.001
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.001
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	0.001
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	0.001
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	0.002
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	0.002
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	0.002
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	0.002
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	0.003
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	0.003
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	0.003
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	0.004
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	0.004
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	0.004
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	0.004

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  119 bits (300), Expect = 1e-35
 Identities = 46/62 (74%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFL 71
           AVY +ADIYLLDDPLSAVD HVG+H+FE+CI G L + KTRILVTHQLQ L H DQIV L
Sbjct: 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVL 200

Query: 72  NN 73
           +N
Sbjct: 201 DN 202

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 94.0 bits (234), Expect = 3e-24
 Identities = 36/73 (49%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVY N+D+Y+ DDPLSA+D HVG+ +F+ CI   L+ KTR+LVT+QL +L+ VD+I+ ++
Sbjct: 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVH 813

Query: 73  N-VSKTSGWVEEI 84
             + K  G  EE+
Sbjct: 814 EGMIKEEGTYEEL 826

Length = 1622

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 89.6 bits (222), Expect = 1e-22
 Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIVF 70
           AVY NADIYL DDPLSAVD HVGKH+FE  I   G LK+KTRILVTH + YL  VD I+ 
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833

Query: 71  L 71
           +
Sbjct: 834 M 834

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 88.3 bits (219), Expect = 3e-22
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
           AVY N D+YLLDDPLSA+D HVG+ + E+C  G L  KTR+L THQ+  +   D +V L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854

Length = 1560

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 77.7 bits (191), Expect = 1e-18
 Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVY N+DIY+ DDPLSA+D HV   +F+ C+   LK KTR+LVT+QL +L  +D+I+ ++
Sbjct: 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVS 813

Query: 73  N-VSKTSGWVEEI 84
             + K  G   E+
Sbjct: 814 EGMIKEEGTFAEL 826

Length = 1495

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 67.7 bits (165), Expect = 2e-15
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTH 57
           ++G    ++C   A+Y+N +I  LDDP SA+D+H+  HL ++ I  FL+D  +T +LVTH
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200

Query: 58  QLQYLNHVDQIVFLNN 73
           +LQYL H D I+ + +
Sbjct: 201 KLQYLPHADWIIAMKD 216

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 28/61 (45%), Positives = 43/61 (70%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P + +D+   K +FE C+   + +KTRILVT +L++L   D+I+ L+
Sbjct: 562 AVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621

Query: 73  N 73
            
Sbjct: 622 E 622

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232

Query: 73  NVS 75
             S
Sbjct: 233 EGS 235

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 63.2 bits (155), Expect = 3e-14
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ ++  I +LD+  SA+D    + L  + +    K KT I++ H+L  +   D+I+ L+
Sbjct: 110 ALLRDPPILILDEATSALDPE-TEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLD 168

Query: 73  N 73
           +
Sbjct: 169 D 169

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ +N  I +LD+  SA+D      + +  +   LK +T +++ H+L  + + D+I+ L+
Sbjct: 479 ALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRIIVLD 537

Query: 73  N 73
           N
Sbjct: 538 N 538

Length = 567

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+   A + LLD+P + +D    + + +  +    K KT +++TH+L+     D+IV L+
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLD 528

Query: 73  N 73
           N
Sbjct: 529 N 529

Length = 559

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ ++  I LLD+P SA+D    +   +  +  +L  KT +LVTH+   L+ VD+I+ ++
Sbjct: 615 ALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMD 673

Query: 73  N 73
           N
Sbjct: 674 N 674

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+  +  I LLD+P SA+DM+  + L E  +   L DKT I++TH+   L+ VD+I+ ++
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMD 212

Query: 73  N 73
           +
Sbjct: 213 S 213

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 16  KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
           ++A I LLD+P   +D    + L    I   LKDKT I +TH L  + H+D+I+FL N
Sbjct: 115 QDAPIVLLDEPTVGLDPITERQLLS-LIFEVLKDKTLIWITHHLTGIEHMDKILFLEN 171

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQYL-NHVDQIVFLNN 73
           N D+ LLD+P + VD+   K +++  +   L+   KT ++VTH L  +  + D+++ LN 
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214

Query: 74  VSKTSGWVEEIL 85
               SG  EE+L
Sbjct: 215 HLIASGPPEEVL 226

Length = 254

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYL-NHVDQIVF 70
           A+  N D+ LLD+P S +D    +    + +    ++ +T I+VTH  +      D+++ 
Sbjct: 94  ALLLNPDLLLLDEPTSGLDPA-SRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV 152

Query: 71  LNN 73
           L +
Sbjct: 153 LKD 155

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ KN  I LLD+  SA+D H  + +    +    K +T I++ H+L  + + D+I+ L 
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQA-ALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209

Query: 73  N 73
           +
Sbjct: 210 D 210

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+     I LLD+  SA+D      + ++ +   L+ +T I++ H+L  +   D+I+ L+
Sbjct: 623 ALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLD 681

Query: 73  N 73
            
Sbjct: 682 Q 682

Length = 709

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ +   + LLD+P +++D H  + + +  ++   + +T ++VTHQL+ L   DQI  + 
Sbjct: 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557

Query: 73  N 73
           +
Sbjct: 558 D 558

Length = 588

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 16  KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
            +A ++LLD+P   +D    + +    +    + KT ++VTH+L+ L  +D+I+ L+N
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN 547

Length = 573

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ K+  I +LD+  SA+D    + L +  +   +K++T  ++ H+L  + + D+IV L 
Sbjct: 152 ALLKDPPILILDEATSALD-TESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLE 210

Query: 73  N 73
           +
Sbjct: 211 D 211

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 41.3 bits (98), Expect = 8e-06
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-----KTRILVTHQLQYL-NHVDQIVF 70
           + DI LLD+P + +D    + L E      LK      KT I+VTH L  L    D+++ 
Sbjct: 152 DPDILLLDEPTAGLDPAGRRELLE-----LLKKLKAEGKTIIIVTHDLDLLLELADRVIV 206

Query: 71  LNN 73
           L +
Sbjct: 207 LED 209

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ ++  I +LD+  S +D    K L ++ +   +K +T I++ H+L  + + D+I+ L+
Sbjct: 153 AMLRDPKILILDEATSNIDTETEK-LIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLD 211

Query: 73  N 73
           +
Sbjct: 212 D 212

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 13  AVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI 68
           A+  +A + LLD+P   +D      + + L E       ++KT +++TH+L  L   D+I
Sbjct: 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAE-----HAQNKTVLMITHRLTGLEQFDRI 543

Query: 69  VFLNN 73
             ++N
Sbjct: 544 CVMDN 548

Length = 574

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL-QYLNHVDQIVFLNN 73
           + D+ LLD+P + VD    + ++E       +  T ++VTH L   L + D+++ LN 
Sbjct: 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
           A+ K+A I +LD+  SA+D    + + +  +   ++ +T +++ H+L  +   D+IV +
Sbjct: 483 ALLKDAPILILDEATSALDNESERLV-QAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 38.7 bits (91), Expect = 6e-05
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFL 71
           A+Y N  I +LD+P S +D   G+      I+       TRI++ H+ + L   D+I+ L
Sbjct: 110 ALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVL 168

Query: 72  NN 73
            +
Sbjct: 169 ED 170

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ KNA I +LD+  SA+D+     + ++ I    K++T  ++ H+L  + + D ++FL+
Sbjct: 485 AILKNAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLD 543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ K+A I LLD+  SA+D    + L +  +   +K +T +++ H+L  +   D+IV ++
Sbjct: 490 AILKDAPILLLDEATSALDAE-SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548

Query: 73  N 73
            
Sbjct: 549 Q 549

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
           A+ +N  + +LD+  SA+D    +   +  +  + + +T +++ H+L  +   DQI+ L
Sbjct: 164 ALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVL 221

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQ 58
           ++G    +LC   A+    D+ L+D+P SA+D    + + E C+   LK++ T I+VTH 
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE--LKEQYTIIMVTHN 219

Query: 59  LQYLNHV-DQIVFLNNVSKTSG 79
           +Q  + V D   F N      G
Sbjct: 220 MQQASRVADWTAFFNTEIDEYG 241

Length = 274

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
           A  ++A + LLD+P + +D      +  + +    + +T +LVTH+L      D+IV L
Sbjct: 472 AFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ +   + +LD+  SA+D    + L E   S     +T +L+ H+L  +   DQI+ L 
Sbjct: 631 ALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLK 687

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 19  DIYLLDDPLSAVDMHVGKHL---FEDCISGFLKDKTRILVTH-QLQYLNHVDQIVFLNN 73
            + LLD+P  A+D  V K L               T + VTH Q + L   D++V LN 
Sbjct: 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRL--GVTTVFVTHDQEEALELADRVVVLNQ 213

Length = 345

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 11/70 (15%)

Query: 19  DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK---TRILVTH-QLQYLNHVDQIVFLNNV 74
            + LLD+PLSA+D  V +HL  + I   L+ +   T I+VTH Q + L+  D+IV +N+ 
Sbjct: 154 GLLLLDEPLSALDARVREHLRTE-IRQ-LQRRLGVTTIMVTHDQEEALSMADRIVVMNH- 210

Query: 75  SKTSGWVEEI 84
               G +E++
Sbjct: 211 ----GVIEQV 216

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
           ++G    +LC   A+  + ++ L+D+P SA+D  V     ED I    ++ T ++VTH +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALD-PVATSKIEDLIEELAEEYTVVIVTHNM 239

Query: 60  Q 60
           Q
Sbjct: 240 Q 240

Length = 285

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
           ++G    +LC    +  + ++ L+D+P SA+D  +     ED I    +D T ++VTH +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALD-PISTTKIEDLIHKLKEDYTIVIVTHNM 205

Query: 60  QYLNHVDQIV--FLNNVSKTSGWVEEIL 85
           Q    V +    FLN     SG  ++I 
Sbjct: 206 QQATRVSKYTSFFLNGEIIESGLTDQIF 233

Length = 250

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
           ++G    +LC   A+    D+ L+D+P SA+D  +     ED I+   +D T ++VTH +
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALD-PISTLAIEDLINELKQDYTIVIVTHNM 207

Query: 60  QYLNHV-DQIVFLN 72
           Q    V DQ  F N
Sbjct: 208 QQAARVSDQTAFFN 221

Length = 258

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHV-DQIVFLNN 73
           + ++ +LD+P S +D    +  F + +    K+ KT +L +H L+    + D++  LNN
Sbjct: 113 DPELLILDEPTSGLDP-ESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNN 170

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 19  DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNN 73
           ++ LLD+P SA+D  +     E+ I+   K+ T ++VTH +Q    V D+  FL N
Sbjct: 161 EVLLLDEPTSALDP-ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLN 215

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           NA+I +LDD LSAVD      +  + +  + + +T I+  H+L  L    +I+ + 
Sbjct: 469 NAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQ 523

Length = 569

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVD----MHVGKHLFEDCISGFLKDK-TRIL 54
           ++G    +LC   A+    DI L+D+P SA+D    M + + +FE      LK   T I+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE------LKKNYTIII 217

Query: 55  VTHQLQ 60
           VTH +Q
Sbjct: 218 VTHNMQ 223

Length = 267

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTH-QLQYLNHVDQIV 69
           A+ +   ++L+D+PLS +D  +   +  + +    +    T I VTH Q++ +   D+I 
Sbjct: 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202

Query: 70  FLNN 73
            +N+
Sbjct: 203 VMND 206

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ +N  I LLD+  SA+D    K L ++ +   +K +T I++ H+L  + + D I  L 
Sbjct: 153 ALLRNPKILLLDEATSALDAESEK-LVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQ 211

Query: 73  N 73
           N
Sbjct: 212 N 212

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQ 58
           ++G    +LC   A+  N D+ L+D+P SA+D  V     E+ I   LK+K T ++VTH 
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALD-PVSTRKIEELILK-LKEKYTIVIVTHN 213

Query: 59  LQYLNHV-DQIVFL 71
           +Q    V DQ  F 
Sbjct: 214 MQQAARVSDQTAFF 227

Length = 259

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 18  ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
           A I LLD+P   +D      L ED ++  L  +T +L+TH L
Sbjct: 490 APILLLDEPTEHLDAETADELLEDLLAA-LSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 33.9 bits (79), Expect = 0.003
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 18/71 (25%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD------KTRILVTHQLQYLNHV- 65
           A+ +   I LLD+P S +D+     L E      L+       KT ++V H    LN   
Sbjct: 111 ALAQEPPILLLDEPTSHLDIAHQIELLE-----LLRRLARERGKTVVMVLH---DLNLAA 162

Query: 66  ---DQIVFLNN 73
              D+++ L +
Sbjct: 163 RYADRVILLKD 173

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
           ++G    +LC    +  + ++ L+D+P SA+D  +     ED I    ++ T ++VTH +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALD-PIATSKIEDLIEELAEEYTVVVVTHNM 259

Query: 60  QYLNHV-DQI-VFL 71
           Q    + DQ  VFL
Sbjct: 260 QQAARISDQTAVFL 273

Length = 305

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
           N ++ L+D+P SA+D  +     ED I    K+ T I+VTH +Q
Sbjct: 167 NPEVILMDEPCSALD-PIATAKIEDLIEDLKKEYTVIIVTHNMQ 209

Length = 253

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 1   MTGKSSCQLCF-EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL 59
           ++G    +LC   A+    ++ LLD+P SA+D  +     E+ +    KD T  LVTH +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALD-PIATRRVEELMVELKKDYTIALVTHNM 208

Query: 60  QYLNHVDQIVFLNNVSKTSG 79
           Q    V       +V  + G
Sbjct: 209 QQAIRVADTTAFFSVDISQG 228

Length = 261

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 17  NADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQ 60
           +  I LLD+P SA+D +  GK   E+ + G   D T +LVT  +Q
Sbjct: 166 SPKIILLDEPTSALDPISAGK--IEETLLGLKDDYTMLLVTRSMQ 208

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.96
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.95
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.95
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.95
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.95
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.95
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.95
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.95
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.95
KOG0055|consensus	1228		99.94
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.94
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.94
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.94
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.94
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.94
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.94
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.94
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.94
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.94
KOG0058|consensus	716		99.94
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.94
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.94
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.94
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.94
KOG0055|consensus	1228		99.94
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.94
COG1123	539	ATPase components of various ABC-type transport sy	99.94
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.94
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
COG1123	539	ATPase components of various ABC-type transport sy	99.94
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.94
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.94
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.94
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.94
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.94
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.94
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.94
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.94
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.94
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.94
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.94
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.94
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.93
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.93
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.93
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.93
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.93
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.93
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.93
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.93
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.93
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.93
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.93
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.93
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.93
COG4988	559	CydD ABC-type transport system involved in cytochr	99.93
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.93
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.93
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.93
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.93
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.93
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.93
cd03246	173	ABCC_Protease_Secretion This family represents the	99.93
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.93
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.93
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.93
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.93
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.93
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.93
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.93
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.93
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.93
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.93
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.93
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.93
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.93
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.93
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.93
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.93
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.93
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.93
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.93
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.93
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.93
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.93
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.93
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.93
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.93
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.93
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.93
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.93
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.93
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.93
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.93
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.93
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG4172	534	ABC-type uncharacterized transport system, duplica	99.93
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.93
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.93
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.92
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.92
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.92
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.92
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.92
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.92
KOG0057|consensus	591		99.92
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.92
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.92
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.92
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.92
PRK10908	222	cell division protein FtsE; Provisional	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.92
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.92
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.92
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.92
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.92
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.92
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.92
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.92
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.92
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.92
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.92
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.92
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.92
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.92
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.92
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.92
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.92
COG4987	573	CydC ABC-type transport system involved in cytochr	99.92
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.92
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.92
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10938	490	putative molybdenum transport ATP-binding protein	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.92
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.92
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.92
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.92
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.92
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.92
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.92
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.92
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.92
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.92
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.92
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.92
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.92
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.91
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.91
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.91
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.91
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.91
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.91
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.91
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.91
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.91
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.91
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.91
KOG0054|consensus	1381		99.91
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.91
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.91
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.91
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.91
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.91
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.91
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.91
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.91
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.91
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.91
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.91
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.91
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.91
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.91
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.91
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.91
PTZ00243	1560	ABC transporter; Provisional	99.91
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.91
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.9
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.9
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.9
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.9
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.9
PLN03211	659	ABC transporter G-25; Provisional	99.9
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.9
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.9
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.9
COG4172	534	ABC-type uncharacterized transport system, duplica	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.9
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.9
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.9
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.89
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.89
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.89
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.89
PTZ00243	1560	ABC transporter; Provisional	99.89
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.89
PRK10938	490	putative molybdenum transport ATP-binding protein	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.88
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.88
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.88
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.88
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.88
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.88
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.88
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.88
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.88
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.88
PRK13409	590	putative ATPase RIL; Provisional	99.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.88
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.88
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.87
PRK11147	635	ABC transporter ATPase component; Reviewed	99.87
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.87
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.87
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.87
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.87
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.87
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.87
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.87
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.87
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.86
PLN03073	718	ABC transporter F family; Provisional	99.86
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.86
PLN03140	1470	ABC transporter G family member; Provisional	99.86
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.86
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.86
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.86
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.85
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.85
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.85
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.85
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.85
PRK13409	590	putative ATPase RIL; Provisional	99.85
PLN03073	718	ABC transporter F family; Provisional	99.85
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.85
PRK11147	635	ABC transporter ATPase component; Reviewed	99.85
COG4559	259	ABC-type hemin transport system, ATPase component	99.85
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.85
KOG0056|consensus	790		99.85
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.85
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.84
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.83
PLN03140	1470	ABC transporter G family member; Provisional	99.83
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.82
KOG0054|consensus	1381		99.82
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.82
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.82
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.82
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.82
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.82
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
KOG0061|consensus	613		99.81
COG0488	530	Uup ATPase components of ABC transporters with dup	99.81
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.81
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.81
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.81
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.8
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.8
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.8
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.8
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.79
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.79
KOG0059|consensus	885		99.78
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.78
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.78
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.77
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.75
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.74
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.73
COG0488	530	Uup ATPase components of ABC transporters with dup	99.73
KOG0062|consensus	582		99.73
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.72
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.72
PHA02562	562	46 endonuclease subunit; Provisional	99.7
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.7
PRK10869	553	recombination and repair protein; Provisional	99.69
KOG0927|consensus	614		99.69
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.65
PRK03918	880	chromosome segregation protein; Provisional	99.64
KOG0062|consensus	582		99.64
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.63
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.63
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.61
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.6
KOG0065|consensus	1391		99.6
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.59
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.57
PRK01156	895	chromosome segregation protein; Provisional	99.56
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.56
KOG0927|consensus	614		99.56
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.56
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.55
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.54
COG4178	604	ABC-type uncharacterized transport system, permeas	99.54
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.53
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.51
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.5
KOG0066|consensus	807		99.5
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.49
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.46
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.45
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.44
PRK02224	880	chromosome segregation protein; Provisional	99.43
PRK00064	361	recF recombination protein F; Reviewed	99.43
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.34
KOG0066|consensus	807		99.34
TIGR00611	365	recf recF protein. All proteins in this family for	99.31
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.28
KOG0060|consensus	659		99.27
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.27
KOG2355|consensus	291		99.25
KOG0065|consensus	1391		99.16
PRK14079	349	recF recombination protein F; Provisional	99.15
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.11
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.09
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.08
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.08
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.08
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.07
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.04
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.01
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.0
KOG0063|consensus	592		98.94
KOG0064|consensus	728		98.91
KOG0063|consensus	592		98.82
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.81
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.78
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.77
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.69
PRK13695	174	putative NTPase; Provisional	98.63
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.61
cd01128	249	rho_factor Transcription termination factor rho is	98.59
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.58
COG3910	233	Predicted ATPase [General function prediction only	98.56
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.41
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.4
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.36
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.28
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	98.26
KOG0964|consensus	1200		98.21
PRK06067	234	flagellar accessory protein FlaH; Validated	98.14
PF13175	415	AAA_15: AAA ATPase domain	98.07
KOG0933|consensus	1174		98.05
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.01
KOG0962|consensus	1294		97.98
PF13166	712	AAA_13: AAA domain	97.85
COG4637	373	Predicted ATPase [General function prediction only	97.84
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.8
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	97.75
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.75
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.68
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	97.57
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	97.54
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.46
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.27
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.2
PRK05399	854	DNA mismatch repair protein MutS; Provisional	97.14
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	97.04
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.01
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	96.92
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	96.9
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.71
PF13514	1111	AAA_27: AAA domain	96.33
smart00382	148	AAA ATPases associated with a variety of cellular	96.32
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.3
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	96.02
COG3044	554	Predicted ATPase of the ABC class [General functio	95.88
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	95.82
KOG0996|consensus	1293		95.79
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	95.65
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	95.58
PRK14088	440	dnaA chromosomal replication initiation protein; P	95.55
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	95.16
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.04
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	95.02
KOG0018|consensus	1141		94.83
PRK06893	229	DNA replication initiation factor; Validated	94.21
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	94.02
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	93.99
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	93.68
PF12846	304	AAA_10: AAA-like domain	93.67
COG4938	374	Uncharacterized conserved protein [Function unknow	93.61
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	93.25
TIGR00929	785	VirB4_CagE type IV secretion/conjugal transfer ATP	93.06
PRK14087	450	dnaA chromosomal replication initiation protein; P	92.73
PRK04296	190	thymidine kinase; Provisional	92.69
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	92.3

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=9.9e-32  Score=172.58  Aligned_cols=85  Identities=21%  Similarity=0.314  Sum_probs=77.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~-   78 (85)
                      ||||+|||+|||||+.+|+++++|||||+|||+...+++..+.....+|.|.++|||++.++.. +|||++|++|.+.. 
T Consensus       138 SGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~  217 (240)
T COG1126         138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE  217 (240)
T ss_pred             CcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence            7999999999999999999999999999999999999998766666789999999999999865 89999999997764 


Q ss_pred             CcccccC
Q psy1506          79 GWVEEIL   85 (85)
Q Consensus        79 g~~~~~~   85 (85)
                      |+|++++
T Consensus       218 g~p~~~f  224 (240)
T COG1126         218 GPPEEFF  224 (240)
T ss_pred             cCHHHHh
Confidence            8887753

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.7e-29  Score=165.83  Aligned_cols=85  Identities=31%  Similarity=0.406  Sum_probs=75.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeecC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTSG   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~g   79 (85)
                      |+||+||+.|||||+++|++++|||||+|+|+.++..+++.+.+...+|+||++||||++.+ .++|++++|++..+..|
T Consensus       141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G  220 (254)
T COG1121         141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASG  220 (254)
T ss_pred             CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEecc
Confidence            89999999999999999999999999999999999988876555555699999999999986 67999999988777779


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus       221 ~~~~~~  226 (254)
T COG1121         221 PPEEVL  226 (254)
T ss_pred             Chhhcc
Confidence            988763

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=6.8e-30  Score=170.82  Aligned_cols=85  Identities=22%  Similarity=0.272  Sum_probs=76.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||||||+|||||+.+|++|+.|||||+|||++.+.+++.+....++ |.|+++|||.++.++ .|||+.+|++|++++
T Consensus       143 SGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE  222 (339)
T COG1135         143 SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE  222 (339)
T ss_pred             CcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence            799999999999999999999999999999999999999776554443 899999999999986 599999999999986


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |+..+++
T Consensus       223 ~G~v~~vF  230 (339)
T COG1135         223 EGTVSEVF  230 (339)
T ss_pred             eccHHHhh
Confidence             8877653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.5e-29  Score=163.44  Aligned_cols=84  Identities=23%  Similarity=0.360  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      ||||+||++|||||..+|+++|+|||||+||...+..++..+....+ .+.|.++||||+..+.+ |||+++|++|++++
T Consensus       143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE  222 (252)
T COG1124         143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE  222 (252)
T ss_pred             ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence            79999999999999999999999999999999999999877655443 36799999999999875 99999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       ++.+++
T Consensus       223 ~~~~~~l  229 (252)
T COG1124         223 IGPTEEL  229 (252)
T ss_pred             eechhhh
Confidence             666554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=2.2e-28  Score=158.46  Aligned_cols=77  Identities=23%  Similarity=0.253  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~   77 (85)
                      ||||+|||+|||||+++|++++.||||++||.++.+.++..+.+...+ |.|+|+||||+.....|||++.+++|++.
T Consensus       144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            799999999999999999999999999999999999999876665544 88999999999999999999999999854

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.1e-28  Score=155.50  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      ||||||||++||||+++|++++|||||+|||..+.+.+.+.+.+...+|+++++.||.++++. .||+++++++|.++. 
T Consensus       135 S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~  214 (245)
T COG4555         135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE  214 (245)
T ss_pred             chhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence            799999999999999999999999999999999877776554444456999999999999986 799999999998875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++.+
T Consensus       215 gs~~~l  220 (245)
T COG4555         215 GSIEAL  220 (245)
T ss_pred             CCHHHH
Confidence            776643

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.95  E-value=5.3e-28  Score=159.22  Aligned_cols=85  Identities=26%  Similarity=0.309  Sum_probs=76.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||+.|||||+.+|++++|||||++||...+-++++.+.+... +|.|+|++.||++.. .+||++++|++|++..
T Consensus       140 SGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a  219 (258)
T COG1120         140 SGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA  219 (258)
T ss_pred             ChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence            79999999999999999999999999999999999999987665553 489999999999875 7899999999999875


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |.|++++
T Consensus       220 ~G~p~evl  227 (258)
T COG1120         220 QGTPEEVL  227 (258)
T ss_pred             ecCcchhc
Confidence             9998864

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=4.7e-28  Score=158.10  Aligned_cols=84  Identities=26%  Similarity=0.296  Sum_probs=74.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++||.+|+.+|++++|||||++||+...+.+++.+.+...+ |.|+|++|||++.+ .+||++++|++|++..
T Consensus       140 SGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~  219 (235)
T COG1122         140 SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA  219 (235)
T ss_pred             CCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence            899999999999999999999999999999999999998765555445 68999999999987 5699999999999864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+|+++
T Consensus       220 ~g~p~~i  226 (235)
T COG1122         220 DGDPAEI  226 (235)
T ss_pred             cCCHHHH
Confidence             887765

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.95  E-value=3.6e-28  Score=177.21  Aligned_cols=83  Identities=24%  Similarity=0.384  Sum_probs=76.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||++||||++++|++++||||||+||+.+.+.+.+. +..+..|+|+|+++|++..+.+||++++|++|++.. |
T Consensus       611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~-L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g  689 (709)
T COG2274         611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG  689 (709)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH-HHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence            79999999999999999999999999999999988888766 455677899999999999999999999999999986 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+|+
T Consensus       690 s~~el  694 (709)
T COG2274         690 SHEEL  694 (709)
T ss_pred             CHHHH
Confidence            88775

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.95  E-value=6.8e-28  Score=158.27  Aligned_cols=85  Identities=26%  Similarity=0.302  Sum_probs=74.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~   78 (85)
                      ||||.|||.+||||+.+|++++|||||++|||-++..+-+.+....++ ++|+|+||||+++ +..+||+.+|++|++..
T Consensus       137 SGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q  216 (309)
T COG1125         137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ  216 (309)
T ss_pred             CcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence            799999999999999999999999999999999888887766554444 8999999999987 57799999999999874


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       ++|++++
T Consensus       217 ~~~P~~il  224 (309)
T COG1125         217 YDTPDEIL  224 (309)
T ss_pred             eCCHHHHH
Confidence             8887753

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.95  E-value=7.2e-28  Score=172.32  Aligned_cols=83  Identities=24%  Similarity=0.381  Sum_probs=75.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||++||||++++|+++|||||||+||+++.+.+.+. +....+++|+|++||+++.+..+|+|+++++|++.+ |
T Consensus       487 SGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G  565 (588)
T PRK11174        487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQG  565 (588)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecC
Confidence            79999999999999999999999999999999998888765 455567899999999999999999999999999876 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       566 ~~~eL  570 (588)
T PRK11174        566 DYAEL  570 (588)
T ss_pred             CHHHH
Confidence            87765

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.7e-27  Score=159.78  Aligned_cols=85  Identities=24%  Similarity=0.288  Sum_probs=76.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      ||||+||+.||.|++.+|+++|.||||++||...+.++++.+.+..+ .|.++|+||||+..+ ..||+|++|..|++++
T Consensus       155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE  234 (316)
T COG0444         155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE  234 (316)
T ss_pred             CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence            79999999999999999999999999999999999999877655444 489999999999986 5699999999999987


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |++++++
T Consensus       235 ~g~~~~i~  242 (316)
T COG0444         235 EGPVEEIF  242 (316)
T ss_pred             eCCHHHHh
Confidence             8887763

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.6e-27  Score=162.56  Aligned_cols=84  Identities=23%  Similarity=0.245  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++++||||++||+.+...+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++.+
T Consensus       142 SgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~  221 (343)
T TIGR02314       142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE  221 (343)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888765544444 89999999999987 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       222 ~g~~~~v  228 (343)
T TIGR02314       222 QGTVSEI  228 (343)
T ss_pred             EcCHHHH
Confidence             776654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>KOG0055|consensus

Probab=99.94  E-value=1.1e-27  Score=179.78  Aligned_cols=84  Identities=24%  Similarity=0.389  Sum_probs=76.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      ||||||||+|||||+++|+|||||||||+||++. +++.+..+....+|+|.|+|+|+++.++++|++++|++|++++ |
T Consensus       491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G  569 (1228)
T KOG0055|consen  491 SGGQKQRIAIARALVRNPKILLLDEATSALDAES-ERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG  569 (1228)
T ss_pred             ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH-HHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence            7999999999999999999999999999999985 4555666778889999999999999999999999999999987 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +++|++
T Consensus       570 ~h~ELi  575 (1228)
T KOG0055|consen  570 THDELI  575 (1228)
T ss_pred             CHHHHH
Confidence            998864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.7e-27  Score=155.32  Aligned_cols=74  Identities=26%  Similarity=0.347  Sum_probs=68.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g   74 (85)
                      |||||||++|||||+.+|++++|||||++||.-++..+.+.+.+.|.+ +.|+++||||.++. ..+|||++|.++
T Consensus       132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            899999999999999999999999999999999999998888887764 78999999999885 569999999984

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=2.4e-27  Score=159.35  Aligned_cols=85  Identities=27%  Similarity=0.333  Sum_probs=76.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~   78 (85)
                      ||||+|||.|||||..+|+|++||||||+|||-.+.++..++++...+ ++||++||||+++ ++..|||.+|++|+++.
T Consensus       166 SGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ  245 (386)
T COG4175         166 SGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ  245 (386)
T ss_pred             cchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence            799999999999999999999999999999999888887776655443 7899999999987 57799999999999986


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |+|+|++
T Consensus       246 ~Gtp~eIl  253 (386)
T COG4175         246 VGTPEEIL  253 (386)
T ss_pred             eCCHHHHH
Confidence             9999874

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=5.1e-27  Score=152.17  Aligned_cols=84  Identities=23%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++.+. .||++++|++|++..
T Consensus       138 SgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~  217 (235)
T cd03261         138 SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA  217 (235)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence            79999999999999999999999999999999988888776544444 3789999999999864 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       218 ~g~~~~~  224 (235)
T cd03261         218 EGTPEEL  224 (235)
T ss_pred             ecCHHHH
Confidence             666543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.94  E-value=4.7e-27  Score=161.20  Aligned_cols=84  Identities=24%  Similarity=0.259  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+.+.+.....+ ++|+|++||+++++ ..||++++|++|++..
T Consensus       131 SGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~  210 (363)
T TIGR01186       131 SGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ  210 (363)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence            799999999999999999999999999999999999888776554443 89999999999875 6699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       211 ~g~~~ei  217 (363)
T TIGR01186       211 VGTPDEI  217 (363)
T ss_pred             eCCHHHH
Confidence             877664

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.94  E-value=5.8e-27  Score=157.57  Aligned_cols=84  Identities=20%  Similarity=0.295  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+++|++++|||||+|||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       140 S~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~  219 (306)
T PRK13537        140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE  219 (306)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999888887665444346899999999999874 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       220 g~~~~l  225 (306)
T PRK13537        220 GAPHAL  225 (306)
T ss_pred             CCHHHH
Confidence            777654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.94  E-value=7.2e-27  Score=156.65  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||+|||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       126 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~  205 (302)
T TIGR01188       126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE  205 (302)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            799999999999999999999999999999999888887665444446899999999999875 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       206 g~~~~l  211 (302)
T TIGR01188       206 GTPEEL  211 (302)
T ss_pred             CCHHHH
Confidence            776553

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.6e-27  Score=160.45  Aligned_cols=84  Identities=20%  Similarity=0.274  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ |.|+|+|||+.+.+ ..||++++|++|++..
T Consensus       136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~  215 (356)
T PRK11650        136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ  215 (356)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            799999999999999999999999999999999988888766544444 88999999999876 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       216 ~g~~~~~  222 (356)
T PRK11650        216 IGTPVEV  222 (356)
T ss_pred             ECCHHHH
Confidence             887765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=6.2e-27  Score=152.32  Aligned_cols=83  Identities=24%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      ||||++|++||||++.+|+++++||||+||||-....+- .++...++  +.|+++||||++.+ ..||+++++.+|++.
T Consensus       147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~  225 (263)
T COG1127         147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI  225 (263)
T ss_pred             cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence            799999999999999999999999999999998766554 45555443  78999999999886 568999999999997


Q ss_pred             c-Cccccc
Q psy1506          78 S-GWVEEI   84 (85)
Q Consensus        78 ~-g~~~~~   84 (85)
                      + |+++++
T Consensus       226 ~~Gt~~el  233 (263)
T COG1127         226 AEGTPEEL  233 (263)
T ss_pred             EeCCHHHH
Confidence            5 988875

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.5e-27  Score=158.66  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ |.|+|+||||++.+. .||++++|++|++++
T Consensus       160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive  239 (330)
T PRK15093        160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE  239 (330)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999998888766554443 889999999999874 699999999999975


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       240 ~g~~~~i  246 (330)
T PRK15093        240 TAPSKEL  246 (330)
T ss_pred             ECCHHHH
Confidence             776554

>KOG0058|consensus

Probab=99.94  E-value=4.5e-27  Score=169.54  Aligned_cols=84  Identities=24%  Similarity=0.445  Sum_probs=75.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      ||||||||+|||||+++|+||||||.||+||.+ .+.+.++.+....+++|+++|.|+++.++.+|+|+++++|++.+ |
T Consensus       606 SGGQKQRIAIARALlr~P~VLILDEATSALDae-SE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G  684 (716)
T KOG0058|consen  606 SGGQKQRIAIARALLRNPRVLILDEATSALDAE-SEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG  684 (716)
T ss_pred             cchHHHHHHHHHHHhcCCCEEEEechhhhcchh-hHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence            799999999999999999999999999999998 45555666766677899999999999999999999999999987 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.+|++
T Consensus       685 ~h~eLl  690 (716)
T KOG0058|consen  685 THDELL  690 (716)
T ss_pred             cHHHHh
Confidence            777753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2e-27  Score=152.78  Aligned_cols=83  Identities=24%  Similarity=0.289  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      ||||.||++|||||+.+|++||||||||+|||-...++ ++++..+++..||++|||+++... .+|+..++..|++++ 
T Consensus       151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~  229 (253)
T COG1117         151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF  229 (253)
T ss_pred             ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence            79999999999999999999999999999999877766 566777778899999999998764 589999999999886 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       230 g~T~~i  235 (253)
T COG1117         230 GPTDKI  235 (253)
T ss_pred             cCHHhh
Confidence            887765

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.94  E-value=1.4e-26  Score=149.31  Aligned_cols=83  Identities=27%  Similarity=0.251  Sum_probs=72.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...+ .|+|++||+++.+ ..||++++|++|++.. 
T Consensus       143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  221 (227)
T cd03260         143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF  221 (227)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence            789999999999999999999999999999999888887665444344 8999999999986 4699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       222 g~~~~~  227 (227)
T cd03260         222 GPTEQI  227 (227)
T ss_pred             cCcccC
Confidence            777664

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=6e-27  Score=156.68  Aligned_cols=85  Identities=25%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||+++||||+.+|++|+||||+++||.+.++.+-.++.+...+ |.|.++||||.++. ..+|||++|++|+|..
T Consensus       139 SGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq  218 (345)
T COG1118         139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ  218 (345)
T ss_pred             ChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence            799999999999999999999999999999999888777665554444 88999999999875 6799999999999875


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |+++|++
T Consensus       219 vg~p~ev~  226 (345)
T COG1118         219 VGPPDEVY  226 (345)
T ss_pred             eCCHHHHh
Confidence             8888763

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=9.4e-27  Score=155.95  Aligned_cols=83  Identities=23%  Similarity=0.267  Sum_probs=73.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++||+||+++|+++||||||+||||..+..+++.+.....++ .||+++||.++.+. .||++++|++|++..
T Consensus       138 S~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~  217 (293)
T COG1131         138 SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA  217 (293)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence            7899999999999999999999999999999999888887765555566 79999999999875 499999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       218 ~g~~~~  223 (293)
T COG1131         218 EGTPEE  223 (293)
T ss_pred             eCCHHH
Confidence             76654

>KOG0055|consensus

Probab=99.94  E-value=4.4e-27  Score=176.65  Aligned_cols=84  Identities=25%  Similarity=0.424  Sum_probs=77.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||++||||+++||+||||||.||+||.+ ++++.++.+.....|+|.|+|.|+++.+++||.|.++++|++.+ |
T Consensus      1128 SGGQKQRIAIARAilRnPkILLLDEATSALDse-SErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSE-SERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred             CchHHHHHHHHHHHHcCCCeeeeeccchhhhhh-hHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence            799999999999999999999999999999998 56676777888888999999999999999999999999999987 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.++++
T Consensus      1207 tH~~L~ 1212 (1228)
T KOG0055|consen 1207 THDELL 1212 (1228)
T ss_pred             cHHHHH
Confidence            887763

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.94  E-value=5.9e-27  Score=167.25  Aligned_cols=84  Identities=26%  Similarity=0.407  Sum_probs=75.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++||||||+||+++.+.+.+.+. ...+++|+++|+|+++.+..+|+|++|++|++.+ |
T Consensus       467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G  545 (567)
T COG1132         467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG  545 (567)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence            7899999999999999999999999999999998888876654 4447789999999999998899999999999876 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus       546 ~h~eLl  551 (567)
T COG1132         546 THEELL  551 (567)
T ss_pred             CHHHHH
Confidence            988763

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.94  E-value=6.6e-27  Score=165.68  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=76.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |||||||+.+|+||+++|++||+||||++||+.++.++++.+..... .|.++++||||+..+. .||++++|++|++++
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE  235 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE  235 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence            79999999999999999999999999999999999999877655443 5899999999999975 599999999999986


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |++++++
T Consensus       236 ~G~~~~i~  243 (539)
T COG1123         236 TGPTEEIL  243 (539)
T ss_pred             ecCHHHHH
Confidence             9888764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=9.2e-27  Score=157.79  Aligned_cols=84  Identities=18%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+... .|.|+|++|||++.+ ..||++++|++|++++
T Consensus       155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive  234 (326)
T PRK11022        155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE  234 (326)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999999988876655444 488999999999987 4699999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       235 ~g~~~~~  241 (326)
T PRK11022        235 TGKAHDI  241 (326)
T ss_pred             ECCHHHH
Confidence             776554

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.94  E-value=7.5e-27  Score=170.07  Aligned_cols=81  Identities=26%  Similarity=0.337  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++||||||+||+.+.+.+++.+.+   .++|+|++||+++.+..+|++++|++|++.+ |
T Consensus       617 SGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G  693 (710)
T TIGR03796       617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRG  693 (710)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence            79999999999999999999999999999999999988876543   4789999999999998999999999999985 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       694 ~~~~L  698 (710)
T TIGR03796       694 THEEL  698 (710)
T ss_pred             CHHHH
Confidence            87765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.94  E-value=1.4e-26  Score=150.01  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~  224 (236)
T cd03219         145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE  224 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence            789999999999999999999999999999999888887765443346889999999999874 599999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       225 ~~~~~~  230 (236)
T cd03219         225 GTPDEV  230 (236)
T ss_pred             cCHHHh
Confidence            766553

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.3e-26  Score=154.63  Aligned_cols=84  Identities=18%  Similarity=0.222  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.++..+.+.+.....+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       146 SgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~  225 (288)
T PRK13643        146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC  225 (288)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999988888765443334589999999999987 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       226 g~~~~~  231 (288)
T PRK13643        226 GTPSDV  231 (288)
T ss_pred             CCHHHH
Confidence            777654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.94  E-value=1e-26  Score=164.74  Aligned_cols=84  Identities=18%  Similarity=0.261  Sum_probs=75.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||||+.+|+++++|||+|+||+..+..+++.+.+...+ |.|.++||||+.++.. ||||++|++|++++
T Consensus       431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE  510 (539)
T COG1123         431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE  510 (539)
T ss_pred             CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE
Confidence            799999999999999999999999999999999999998876555444 8999999999999865 99999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+.+++
T Consensus       511 ~G~~~~v  517 (539)
T COG1123         511 EGPTEKV  517 (539)
T ss_pred             eCCHHHH
Confidence             866654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.94  E-value=1e-26  Score=157.78  Aligned_cols=84  Identities=15%  Similarity=0.233  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ |.|+|+||||+..+. .||++++|++|++++
T Consensus       163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive  242 (330)
T PRK09473        163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME  242 (330)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888765544443 889999999999875 699999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       243 ~g~~~~i  249 (330)
T PRK09473        243 YGNARDV  249 (330)
T ss_pred             ECCHHHH
Confidence             877654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=8.2e-27  Score=166.62  Aligned_cols=83  Identities=19%  Similarity=0.347  Sum_probs=74.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+++...+++.+ ....+++|+|+|||+++.+..||+|++|++|++.+ |
T Consensus       482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l-~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g  560 (582)
T PRK11176        482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERG  560 (582)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence            799999999999999999999999999999999988887665 44456799999999999888999999999999876 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       561 ~~~~l  565 (582)
T PRK11176        561 THAEL  565 (582)
T ss_pred             CHHHH
Confidence            77664

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=9.2e-27  Score=166.83  Aligned_cols=83  Identities=14%  Similarity=0.272  Sum_probs=74.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+++.+.+.+.+ ..+.+++|+|++||+++.+..+|++++|++|++.+ |
T Consensus       478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l-~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G  556 (592)
T PRK10790        478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQG  556 (592)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEc
Confidence            789999999999999999999999999999999988887654 44556799999999999998999999999999886 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       557 ~~~~L  561 (592)
T PRK10790        557 THQQL  561 (592)
T ss_pred             CHHHH
Confidence            87765

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.94  E-value=1.4e-26  Score=150.20  Aligned_cols=83  Identities=19%  Similarity=0.187  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+++.+.+... .|.|+|++||+++.+. .||++++|++|++..
T Consensus       146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~  225 (241)
T cd03256         146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF  225 (241)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            78999999999999999999999999999999988888776554434 3789999999999875 699999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       226 ~~~~~~  231 (241)
T cd03256         226 DGPPAE  231 (241)
T ss_pred             ecCHHH
Confidence             66554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.94  E-value=9.7e-27  Score=159.60  Aligned_cols=84  Identities=21%  Similarity=0.257  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+...+.+...+  |.|+|++||+++++ ..+|++++|++|++.
T Consensus       139 SgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~  218 (362)
T TIGR03258       139 SGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA  218 (362)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            789999999999999999999999999999999888888765544444  78999999999886 569999999999987


Q ss_pred             c-Cccccc
Q psy1506          78 S-GWVEEI   84 (85)
Q Consensus        78 ~-g~~~~~   84 (85)
                      . |+++++
T Consensus       219 ~~g~~~~~  226 (362)
T TIGR03258       219 AHGEPQAL  226 (362)
T ss_pred             EEcCHHHH
Confidence            5 887765

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1e-26  Score=159.01  Aligned_cols=84  Identities=20%  Similarity=0.264  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+..++.+...+.+...+ +.|+|+|||+.+++ ..+|++++|++|++..
T Consensus       138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~  217 (351)
T PRK11432        138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ  217 (351)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988887765544443 78999999999886 6799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       218 ~g~~~~~  224 (351)
T PRK11432        218 IGSPQEL  224 (351)
T ss_pred             EcCHHHH
Confidence             887765

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=1.4e-26  Score=146.53  Aligned_cols=85  Identities=19%  Similarity=0.303  Sum_probs=77.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~-   78 (85)
                      |+||.||++|||||+.+|+++++|||||+|||+...+++..+.....+|+|.++|||.+.+.+. +.+++++++|.+.+ 
T Consensus       154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~  233 (256)
T COG4598         154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE  233 (256)
T ss_pred             CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence            7999999999999999999999999999999999999987655556689999999999999876 79999999999976 


Q ss_pred             CcccccC
Q psy1506          79 GWVEEIL   85 (85)
Q Consensus        79 g~~~~~~   85 (85)
                      |+|++++
T Consensus       234 G~P~qvf  240 (256)
T COG4598         234 GPPEQVF  240 (256)
T ss_pred             CChHHHh
Confidence            9988764

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.94  E-value=9.9e-27  Score=169.20  Aligned_cols=83  Identities=28%  Similarity=0.424  Sum_probs=75.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++||||||+||+++.+.+.+.+ ....+++|+|+|||+++.+..||+|++|++|++.+ |
T Consensus       603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G  681 (694)
T TIGR03375       603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG  681 (694)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence            799999999999999999999999999999999988887664 44556899999999999998999999999999986 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       682 ~~~eL  686 (694)
T TIGR03375       682 PKDQV  686 (694)
T ss_pred             CHHHH
Confidence            88775

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.6e-26  Score=155.49  Aligned_cols=84  Identities=21%  Similarity=0.241  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.....+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       167 SgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~  246 (305)
T PRK13651        167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKD  246 (305)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999988888766544444589999999999876 5799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       247 g~~~~~  252 (305)
T PRK13651        247 GDTYDI  252 (305)
T ss_pred             CCHHHH
Confidence            776654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.94  E-value=2.2e-26  Score=147.96  Aligned_cols=84  Identities=18%  Similarity=0.231  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus       133 S~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~  212 (220)
T cd03265         133 SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA  212 (220)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            799999999999999999999999999999999888887665544444 789999999999875 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       ++++++
T Consensus       213 ~~~~~~~  219 (220)
T cd03265         213 EGTPEEL  219 (220)
T ss_pred             eCChHHc
Confidence             666553

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.94  E-value=1.6e-26  Score=155.10  Aligned_cols=84  Identities=21%  Similarity=0.316  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       137 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~  216 (303)
T TIGR01288       137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE  216 (303)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999988887765544446889999999999874 699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       217 g~~~~~  222 (303)
T TIGR01288       217 GRPHAL  222 (303)
T ss_pred             cCHHHH
Confidence            766553

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.8e-26  Score=156.13  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.....+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~  257 (320)
T PRK13631        178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT  257 (320)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            79999999999999999999999999999999988888766544444689999999999976 5799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       258 g~~~~~  263 (320)
T PRK13631        258 GTPYEI  263 (320)
T ss_pred             CCHHHH
Confidence            777653

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.4e-26  Score=156.94  Aligned_cols=84  Identities=18%  Similarity=0.263  Sum_probs=74.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||..+...+++.+.+... .|.|+|+||||+..+. .||++++|++|++++
T Consensus       156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive  235 (327)
T PRK11308        156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE  235 (327)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999999988876655444 3889999999999985 599999999999876


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       236 ~g~~~~~  242 (327)
T PRK11308        236 KGTKEQI  242 (327)
T ss_pred             ECCHHHH
Confidence             776654

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.7e-26  Score=153.99  Aligned_cols=84  Identities=20%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.++..+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus       146 SgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~  225 (287)
T PRK13637        146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL  225 (287)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999988887765444343 88999999999986 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       226 ~g~~~~~  232 (287)
T PRK13637        226 QGTPREV  232 (287)
T ss_pred             ECCHHHH
Confidence             776653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.2e-26  Score=168.55  Aligned_cols=81  Identities=25%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++||||||+||+.+.+.+.+.+.+ .  ++|+|+|||+++.+..+|+|++|++|++.+ |
T Consensus       590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G  666 (686)
T TIGR03797       590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER-L--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG  666 (686)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-h--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence            79999999999999999999999999999999998888776533 3  579999999999998999999999999986 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       667 ~~~~L  671 (686)
T TIGR03797       667 TYDEL  671 (686)
T ss_pred             CHHHH
Confidence            87765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.94  E-value=1.5e-26  Score=157.14  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=73.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ +.|+|+||||+..+. .||++++|++|++++
T Consensus       163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive  242 (331)
T PRK15079        163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE  242 (331)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888765544443 889999999999875 599999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       243 ~g~~~~i  249 (331)
T PRK15079        243 LGTYDEV  249 (331)
T ss_pred             EcCHHHH
Confidence             776554

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.9e-26  Score=149.61  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       139 S~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (237)
T PRK11614        139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE  218 (237)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence            78999999999999999999999999999999988888766544444689999999999876 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       219 ~~~~~~  224 (237)
T PRK11614        219 DTGDAL  224 (237)
T ss_pred             CCHHHH
Confidence            776653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.94  E-value=1.9e-26  Score=157.06  Aligned_cols=84  Identities=21%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+++|+++||||||+|||+.++..+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~  253 (340)
T PRK13536        174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE  253 (340)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999988888765554446899999999999874 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       254 g~~~~l  259 (340)
T PRK13536        254 GRPHAL  259 (340)
T ss_pred             cCHHHH
Confidence            777654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.3e-26  Score=149.53  Aligned_cols=83  Identities=22%  Similarity=0.216  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~  226 (243)
T TIGR02315       147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF  226 (243)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            799999999999999999999999999999999888887665444343 78999999999987 5699999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       227 ~~~~~~  232 (243)
T TIGR02315       227 DGAPSE  232 (243)
T ss_pred             cCCHHH
Confidence             76654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.94  E-value=2.6e-26  Score=147.20  Aligned_cols=76  Identities=13%  Similarity=0.175  Sum_probs=67.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus       140 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       140 SGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            789999999999999999999999999999999888887665443345889999999999875 6999999999864

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.93  E-value=2.2e-26  Score=149.59  Aligned_cols=84  Identities=24%  Similarity=0.266  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (239)
T cd03296         138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ  217 (239)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            789999999999999999999999999999999888887665444443 78999999999876 5699999999999864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       218 ~~~~~~~  224 (239)
T cd03296         218 VGTPDEV  224 (239)
T ss_pred             ecCHHHH
Confidence             666543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.93  E-value=1.9e-26  Score=157.71  Aligned_cols=84  Identities=23%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+..++.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~  217 (353)
T PRK10851        138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ  217 (353)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999988887765544444 78999999999886 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       218 ~g~~~~i  224 (353)
T PRK10851        218 AGTPDQV  224 (353)
T ss_pred             EcCHHHH
Confidence             877664

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-26  Score=152.78  Aligned_cols=83  Identities=19%  Similarity=0.190  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.....+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       147 SgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~  226 (287)
T PRK13641        147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH  226 (287)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            79999999999999999999999999999999988888766544334589999999999986 5699999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       227 g~~~~  231 (287)
T PRK13641        227 ASPKE  231 (287)
T ss_pred             CCHHH
Confidence            76654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.9e-26  Score=157.73  Aligned_cols=84  Identities=30%  Similarity=0.347  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++||||+++||+..+..+.+.+.+...+ +.|+|+|||+.+++ ..||++++|++|++..
T Consensus       136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~  215 (353)
T TIGR03265       136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ  215 (353)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999888887765544443 78999999999886 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       216 ~g~~~~~  222 (353)
T TIGR03265       216 VGTPQEI  222 (353)
T ss_pred             EcCHHHH
Confidence             887765

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.93  E-value=2.5e-26  Score=145.12  Aligned_cols=84  Identities=24%  Similarity=0.318  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+|||||+++||+|+++-+|++||||||+|||.-+.++...+.+... ++.|+++|||.++.+. .+++++++++|++.+
T Consensus       131 SGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~  210 (231)
T COG3840         131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA  210 (231)
T ss_pred             CchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence            79999999999999999999999999999999998888876555554 4789999999999874 689999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+.+++
T Consensus       211 ~g~~~~~  217 (231)
T COG3840         211 QGSTQEL  217 (231)
T ss_pred             eccHHHH
Confidence             776654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.93  E-value=3.8e-26  Score=149.11  Aligned_cols=83  Identities=18%  Similarity=0.294  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~  225 (250)
T PRK11264        146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ  225 (250)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654443345889999999999874 699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       226 ~~~~~  230 (250)
T PRK11264        226 GPAKA  230 (250)
T ss_pred             CCHHH
Confidence            66554

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.9e-26  Score=152.31  Aligned_cols=84  Identities=21%  Similarity=0.168  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+ |.|+|++||+++.+..||++++|++|++.. 
T Consensus       142 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~  221 (279)
T PRK13650        142 SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST  221 (279)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999888887665444444 899999999998876799999999999874 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       222 g~~~~~  227 (279)
T PRK13650        222 STPREL  227 (279)
T ss_pred             CCHHHH
Confidence            776553

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.93  E-value=2.7e-26  Score=158.00  Aligned_cols=84  Identities=26%  Similarity=0.289  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|||||+++||+..++.+...+.+...+ +.|+|+|||+..++ ..+|++++|++|++..
T Consensus       146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~  225 (375)
T PRK09452        146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ  225 (375)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999888887765544443 88999999999885 6799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       226 ~g~~~~i  232 (375)
T PRK09452        226 DGTPREI  232 (375)
T ss_pred             EcCHHHH
Confidence             777664

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.2e-26  Score=158.08  Aligned_cols=84  Identities=23%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~  214 (369)
T PRK11000        135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  214 (369)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999888887665444443 78999999999876 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       215 ~g~~~~i  221 (369)
T PRK11000        215 VGKPLEL  221 (369)
T ss_pred             EcCHHHH
Confidence             777654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.6e-26  Score=151.59  Aligned_cols=84  Identities=21%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+|.|+|++||+++.+..||++++|++|++.. |
T Consensus       138 S~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g  217 (274)
T PRK13644        138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEG  217 (274)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887665443346899999999999887799999999999865 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       218 ~~~~~  222 (274)
T PRK13644        218 EPENV  222 (274)
T ss_pred             CHHHH
Confidence            76553

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.93  E-value=4e-26  Score=146.06  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus       132 SgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  211 (213)
T cd03259         132 SGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ  211 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            78999999999999999999999999999999988888776544434 388999999999886 4699999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.9e-26  Score=155.56  Aligned_cols=83  Identities=24%  Similarity=0.283  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+ .+....+++|+|++||+++.+.. ||++++|++|++.+ 
T Consensus       227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~-~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~  305 (329)
T PRK14257        227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEE-LILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA  305 (329)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998887655 45555567999999999999765 99999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       306 g~~~~l  311 (329)
T PRK14257        306 GETKTI  311 (329)
T ss_pred             CCHHHH
Confidence            888765

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.93  E-value=3.7e-26  Score=147.68  Aligned_cols=83  Identities=17%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       135 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  214 (232)
T cd03218         135 SGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE  214 (232)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence            78999999999999999999999999999999988888765544334588999999999876 5699999999998864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       215 ~~~~~  219 (232)
T cd03218         215 GTPEE  219 (232)
T ss_pred             eCHHH
Confidence            66554

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.93  E-value=5.7e-26  Score=144.76  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=67.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|++++|||||++||+...+.+.+.+.+...++.|+|++||+++.+. .||++++|++|+++
T Consensus       128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            789999999999999999999999999999999888887655443356889999999999875 69999999999763

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.3e-26  Score=151.19  Aligned_cols=82  Identities=21%  Similarity=0.230  Sum_probs=72.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       140 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~  219 (274)
T PRK13647        140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE  219 (274)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999998888766544444589999999999987 5799999999999875 


Q ss_pred             Cccc
Q psy1506          79 GWVE   82 (85)
Q Consensus        79 g~~~   82 (85)
                      |+++
T Consensus       220 g~~~  223 (274)
T PRK13647        220 GDKS  223 (274)
T ss_pred             CCHH
Confidence            6654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.2e-26  Score=152.88  Aligned_cols=84  Identities=23%  Similarity=0.251  Sum_probs=72.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.....+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus       147 SgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~  226 (290)
T PRK13634        147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL  226 (290)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999988887665444343 88999999999986 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       227 ~g~~~~~  233 (290)
T PRK13634        227 QGTPREI  233 (290)
T ss_pred             ECCHHHH
Confidence             776653

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.93  E-value=3.5e-26  Score=148.28  Aligned_cols=83  Identities=19%  Similarity=0.336  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+..||++++|++|++.. |
T Consensus       140 SgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~  218 (237)
T cd03252         140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMH-DICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQG  218 (237)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEc
Confidence            7899999999999999999999999999999998888876654 4445889999999999887799999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       219 ~~~~~  223 (237)
T cd03252         219 SHDEL  223 (237)
T ss_pred             CHHHH
Confidence            66543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.93  E-value=3.8e-26  Score=148.38  Aligned_cols=83  Identities=20%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. . ||++++|++|++..
T Consensus       146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~  225 (243)
T TIGR01978       146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK  225 (243)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence            789999999999999999999999999999999888887665444345789999999999875 4 79999999998865


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       226 ~g~~~~  231 (243)
T TIGR01978       226 SGDVEL  231 (243)
T ss_pred             ecCHHH
Confidence             66653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.93  E-value=2.8e-26  Score=155.27  Aligned_cols=84  Identities=25%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus       102 SgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~  181 (325)
T TIGR01187       102 SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ  181 (325)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999888887765544444 78999999999886 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       182 ~g~~~~~  188 (325)
T TIGR01187       182 IGTPEEI  188 (325)
T ss_pred             EcCHHHH
Confidence             777654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.93  E-value=3.6e-26  Score=158.52  Aligned_cols=84  Identities=20%  Similarity=0.261  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+|||||++|||||+++|+++||||||++||+..+..+++.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       141 SgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~  220 (402)
T PRK09536        141 SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA  220 (402)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            78999999999999999999999999999999988888766544444688999999999987 5799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       221 G~~~ev  226 (402)
T PRK09536        221 GPPADV  226 (402)
T ss_pred             cCHHHH
Confidence            887764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-26  Score=156.10  Aligned_cols=84  Identities=20%  Similarity=0.249  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus       142 SgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~  221 (343)
T PRK11153        142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE  221 (343)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999988888765444343 789999999999874 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       222 ~g~~~~~  228 (343)
T PRK11153        222 QGTVSEV  228 (343)
T ss_pred             EcCHHHH
Confidence             766543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.93  E-value=4e-26  Score=146.60  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       134 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (222)
T cd03224         134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE  213 (222)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence            78999999999999999999999999999999988888776544434678999999999986 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       214 ~~~~~~  219 (222)
T cd03224         214 GTAAEL  219 (222)
T ss_pred             CCHHHH
Confidence            666543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.3e-26  Score=162.98  Aligned_cols=83  Identities=27%  Similarity=0.404  Sum_probs=75.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||+++||||++++++++|||||++||.++.+.+.+. +....+++|++++||++..+..+|+|++|++|++.+ |
T Consensus       458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g  536 (559)
T COG4988         458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQG  536 (559)
T ss_pred             CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccC
Confidence            78999999999999999999999999999999987777654 556667799999999999999999999999999886 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      .++++
T Consensus       537 ~~~~L  541 (559)
T COG4988         537 THEEL  541 (559)
T ss_pred             CHHHH
Confidence            87765

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.9e-26  Score=150.52  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       138 SgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~  217 (271)
T PRK13638        138 SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH  217 (271)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            78999999999999999999999999999999988888766544444588999999999987 4699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       218 g~~~~  222 (271)
T PRK13638        218 GAPGE  222 (271)
T ss_pred             CCHHH
Confidence            76654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.93  E-value=4.8e-26  Score=149.44  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  233 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  233 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887665443345899999999999876 599999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       234 ~~~~~  238 (257)
T PRK10619        234 GAPEQ  238 (257)
T ss_pred             CCHHH
Confidence            66554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=1e-26  Score=158.51  Aligned_cols=85  Identities=26%  Similarity=0.289  Sum_probs=75.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY-LNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+|||+|||||+.+|+++|||||+|+||.+.+..+..++.+... .|.|.|+||||.++ +..+|||++|++|++..
T Consensus       138 SGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q  217 (352)
T COG3842         138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ  217 (352)
T ss_pred             ChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence            79999999999999999999999999999999988888777655544 38999999999876 57899999999999986


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |+|++++
T Consensus       218 ~gtP~eiY  225 (352)
T COG3842         218 VGTPEEIY  225 (352)
T ss_pred             cCCHHHHh
Confidence             9998864

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.93  E-value=3.7e-26  Score=147.94  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .+|++++|++|++..
T Consensus       127 S~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  206 (230)
T TIGR02770       127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE  206 (230)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665444443 789999999999874 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       207 ~~~~~~~  213 (230)
T TIGR02770       207 RGTVKEI  213 (230)
T ss_pred             eCCHHHH
Confidence             666553

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.93  E-value=3.3e-26  Score=166.75  Aligned_cols=82  Identities=23%  Similarity=0.391  Sum_probs=74.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+++.+.+.+.+.+ . +++|+|+|||+++.+..+|++++|++|++.+ |
T Consensus       613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G  690 (708)
T TIGR01193       613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG  690 (708)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence            79999999999999999999999999999999998888776543 3 5789999999999988999999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       691 ~~~~L  695 (708)
T TIGR01193       691 SHDEL  695 (708)
T ss_pred             CHHHH
Confidence            87765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.5e-26  Score=149.17  Aligned_cols=84  Identities=20%  Similarity=0.199  Sum_probs=76.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||.|||+|||||+.+|+++|.|||+++|||.+++.+++.+.+... .|.|+|+..|+.+.. .+|+|++-|++|++++
T Consensus       149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf  228 (258)
T COG3638         149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF  228 (258)
T ss_pred             CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence            79999999999999999999999999999999999999987665544 589999999999986 6799999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       229 Dg~~~el  235 (258)
T COG3638         229 DGPASEL  235 (258)
T ss_pred             eCChhhh
Confidence             887664

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.93  E-value=4.8e-26  Score=146.04  Aligned_cols=76  Identities=22%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... ++.|+|++||+++.+..||++++|++|++
T Consensus       142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            78999999999999999999999999999999988888766544434 47899999999988778999999999863

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.93  E-value=2.5e-26  Score=167.73  Aligned_cols=81  Identities=25%  Similarity=0.336  Sum_probs=72.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|+++|||||||+||+++.+.+.+   ....+++|+|+|||+++.+..+|+|++|++|++.+ |
T Consensus       619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G  695 (711)
T TIGR00958       619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG  695 (711)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence            7899999999999999999999999999999998777765   22346789999999999988899999999999986 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       696 t~~eL  700 (711)
T TIGR00958       696 THKQL  700 (711)
T ss_pred             CHHHH
Confidence            88765

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.93  E-value=7.3e-26  Score=141.34  Aligned_cols=76  Identities=25%  Similarity=0.306  Sum_probs=67.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i   76 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+.+.+..||++++|++|++
T Consensus        98 S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246          98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            7899999999999999999999999999999998888877654443458899999999988777999999999863

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.93  E-value=7.9e-26  Score=144.72  Aligned_cols=77  Identities=25%  Similarity=0.353  Sum_probs=67.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|.+.
T Consensus       134 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~~  211 (213)
T cd03235         134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA  211 (213)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEee
Confidence            789999999999999999999999999999999888887765444446889999999999874 68999999987544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.93  E-value=6.7e-26  Score=146.92  Aligned_cols=81  Identities=23%  Similarity=0.307  Sum_probs=70.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       116 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  195 (230)
T TIGR01184       116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN  195 (230)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence            789999999999999999999999999999999888887765544443 78999999999886 4699999999998864


Q ss_pred             -Ccc
Q psy1506          79 -GWV   81 (85)
Q Consensus        79 -g~~   81 (85)
                       |++
T Consensus       196 ~~~~  199 (230)
T TIGR01184       196 IGQI  199 (230)
T ss_pred             ccCc
Confidence             554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=3.7e-26  Score=163.72  Aligned_cols=83  Identities=22%  Similarity=0.362  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      ||||+||++||||++++|++++||||||+||+.+.+.+++.+. ...+++|+|+|||+++.++.+|++++|++|++.+ |
T Consensus       473 SgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~-~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g  551 (588)
T PRK13657        473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG  551 (588)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-HHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence            7999999999999999999999999999999999888876654 4446799999999999888999999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       552 ~~~~l  556 (588)
T PRK13657        552 SFDEL  556 (588)
T ss_pred             CHHHH
Confidence            76654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.93  E-value=6.2e-26  Score=147.27  Aligned_cols=83  Identities=17%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... +|.|+|++||+++.+..||++++|++|++.. 
T Consensus       134 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~  213 (236)
T TIGR03864       134 NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD  213 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence            78999999999999999999999999999999998888876544433 4789999999999876799999999998865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      +++++
T Consensus       214 ~~~~~  218 (236)
T TIGR03864       214 GAAAE  218 (236)
T ss_pred             CCHHH
Confidence            66543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.93  E-value=6.9e-26  Score=145.54  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .+.|+|++||+++.+..+|++++|++|++.
T Consensus       143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            78999999999999999999999999999999988888766544433 378999999999887778999999999764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=5.8e-26  Score=147.62  Aligned_cols=83  Identities=17%  Similarity=0.257  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.....++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       138 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  217 (240)
T PRK09493        138 SGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED  217 (240)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            789999999999999999999999999999999888887654443345889999999999875 599999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       218 g~~~~  222 (240)
T PRK09493        218 GDPQV  222 (240)
T ss_pred             CCHHH
Confidence            66554

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.93  E-value=5.2e-26  Score=161.87  Aligned_cols=84  Identities=23%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|+++||||||++||+++.+.+.+.+.+...+++|+|++||+++....+|++++|++|++.+ |
T Consensus       456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g  535 (544)
T TIGR01842       456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG  535 (544)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence            799999999999999999999999999999999888887665433336789999999998888899999999999876 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       536 ~~~~l  540 (544)
T TIGR01842       536 ERDEV  540 (544)
T ss_pred             CHHHH
Confidence            77664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.93  E-value=5e-26  Score=150.47  Aligned_cols=84  Identities=24%  Similarity=0.280  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus       162 S~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~  241 (269)
T cd03294         162 SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ  241 (269)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544333 378999999999886 5699999999999864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       242 ~g~~~~~  248 (269)
T cd03294         242 VGTPEEI  248 (269)
T ss_pred             eCCHHHH
Confidence             665543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3e-26  Score=155.60  Aligned_cols=85  Identities=24%  Similarity=0.304  Sum_probs=74.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~   78 (85)
                      ||||+|||++||||+++|++++||||+|+||++.+..+..++.+..++ +.|+|+||||..+ +..+||+.+|++|++..
T Consensus       135 SGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q  214 (338)
T COG3839         135 SGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ  214 (338)
T ss_pred             ChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence            799999999999999999999999999999999888887776554443 7899999999866 56799999999999975


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |+|.+++
T Consensus       215 ~g~p~ely  222 (338)
T COG3839         215 VGTPLELY  222 (338)
T ss_pred             cCChHHHh
Confidence             9888763

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.3e-26  Score=150.46  Aligned_cols=84  Identities=21%  Similarity=0.193  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       147 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  226 (280)
T PRK13649        147 SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS  226 (280)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence            78999999999999999999999999999999988888776544434578999999999987 4699999999999864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       227 g~~~~~  232 (280)
T PRK13649        227 GKPKDI  232 (280)
T ss_pred             CCHHHH
Confidence            766543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.9e-26  Score=151.11  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ |.|++++||+++.+. .||++++|++|++.+
T Consensus       143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~  222 (283)
T PRK13636        143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL  222 (283)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665444443 899999999999875 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       223 ~g~~~~~  229 (283)
T PRK13636        223 QGNPKEV  229 (283)
T ss_pred             eCCHHHH
Confidence             776653

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.2e-26  Score=148.32  Aligned_cols=83  Identities=23%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~  226 (250)
T PRK14245        148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH-ELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY  226 (250)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence            7899999999999999999999999999999998888876654 445678999999999987 5699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       227 ~~~~~~  232 (250)
T PRK14245        227 DDTKKI  232 (250)
T ss_pred             CCHHHH
Confidence            776654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.93  E-value=5.6e-26  Score=156.74  Aligned_cols=84  Identities=29%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+++.+.+...+ ++|+|++||+++++ ..+|++++|++|++..
T Consensus       166 SgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~  245 (382)
T TIGR03415       166 SGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ  245 (382)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888776655443 89999999999986 6799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       246 ~g~~~ei  252 (382)
T TIGR03415       246 HGTPEEI  252 (382)
T ss_pred             ecCHHHH
Confidence             877664

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.93  E-value=6.7e-26  Score=148.81  Aligned_cols=84  Identities=13%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+.+.+. .||++++|++|++..
T Consensus       153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~  232 (258)
T PRK11701        153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE  232 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            799999999999999999999999999999999888887665443333 789999999999985 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       233 ~~~~~~~  239 (258)
T PRK11701        233 SGLTDQV  239 (258)
T ss_pred             eCCHHHH
Confidence             766553

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.93  E-value=3.9e-26  Score=162.65  Aligned_cols=83  Identities=22%  Similarity=0.358  Sum_probs=74.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|+|||++.....||+++++++|++.. |
T Consensus       471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L-~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g  549 (571)
T TIGR02203       471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERG  549 (571)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeC
Confidence            799999999999999999999999999999999999887665 44556799999999998888999999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       550 ~~~~l  554 (571)
T TIGR02203       550 THNEL  554 (571)
T ss_pred             CHHHH
Confidence            76654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.93  E-value=6.2e-26  Score=146.84  Aligned_cols=84  Identities=20%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+.....+ |.|+|++||+++.+. .||++++|++|++..
T Consensus       142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  221 (233)
T cd03258         142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE  221 (233)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665444444 889999999999874 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       222 ~~~~~~~  228 (233)
T cd03258         222 EGTVEEV  228 (233)
T ss_pred             ecCHHHH
Confidence             665543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5e-26  Score=156.77  Aligned_cols=84  Identities=21%  Similarity=0.279  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+... .+.|+|++||+.+++ ..+|++++|++|++..
T Consensus       151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~  230 (377)
T PRK11607        151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ  230 (377)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence            79999999999999999999999999999999988888766554444 478999999999885 6799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       231 ~g~~~~~  237 (377)
T PRK11607        231 IGEPEEI  237 (377)
T ss_pred             EcCHHHH
Confidence             887765

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.3e-26  Score=151.16  Aligned_cols=84  Identities=23%  Similarity=0.279  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus       147 SgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~  226 (286)
T PRK13646        147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS  226 (286)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544333 489999999999986 5699999999999874


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       227 ~g~~~~~  233 (286)
T PRK13646        227 QTSPKEL  233 (286)
T ss_pred             ECCHHHH
Confidence             776553

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.93  E-value=9.8e-26  Score=145.18  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=68.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus       147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE  226 (228)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence            789999999999999999999999999999999888887665444444 789999999999875 699999999998753

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.93  E-value=8.1e-26  Score=144.37  Aligned_cols=75  Identities=27%  Similarity=0.311  Sum_probs=66.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|+
T Consensus       136 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            799999999999999999999999999999999988888765444445889999999999875 499999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.93  E-value=6.5e-26  Score=149.86  Aligned_cols=84  Identities=14%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus       145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~  224 (269)
T PRK11831        145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA  224 (269)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665443333 789999999998874 599999999999865


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       225 ~g~~~~~  231 (269)
T PRK11831        225 HGSAQAL  231 (269)
T ss_pred             eCCHHHH
Confidence             666543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.93  E-value=1.7e-25  Score=138.82  Aligned_cols=77  Identities=19%  Similarity=0.234  Sum_probs=67.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~   77 (85)
                      |+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+. .||+++++++|++.
T Consensus        84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  161 (163)
T cd03216          84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV  161 (163)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            789999999999999999999999999999999888887665443345889999999998764 59999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.93  E-value=8.3e-26  Score=149.03  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus       152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  231 (265)
T TIGR02769       152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE  231 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence            789999999999999999999999999999999888887665444443 789999999999875 699999999998865


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       232 ~g~~~~~  238 (265)
T TIGR02769       232 ECDVAQL  238 (265)
T ss_pred             ECCHHHH
Confidence             776654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=6.7e-26  Score=162.31  Aligned_cols=83  Identities=24%  Similarity=0.380  Sum_probs=74.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+++.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.+ |
T Consensus       477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l-~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g  555 (574)
T PRK11160        477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG  555 (574)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence            789999999999999999999999999999999988887654 44456899999999999988899999999999876 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       556 ~~~~l  560 (574)
T PRK11160        556 THQEL  560 (574)
T ss_pred             CHHHH
Confidence            87765

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.93  E-value=1e-25  Score=144.93  Aligned_cols=78  Identities=27%  Similarity=0.330  Sum_probs=68.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEc--Ccee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLN--NVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~--~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .+.|+|++||+++.+ ..||++++|+  +|++
T Consensus       133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i  212 (220)
T cd03293         133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI  212 (220)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEE
Confidence            79999999999999999999999999999999998888876554434 478999999999876 5699999999  7988


Q ss_pred             ec
Q psy1506          77 TS   78 (85)
Q Consensus        77 ~~   78 (85)
                      ..
T Consensus       213 ~~  214 (220)
T cd03293         213 VA  214 (220)
T ss_pred             EE
Confidence            65

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=9.4e-26  Score=147.60  Aligned_cols=83  Identities=20%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+...+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  234 (255)
T PRK11300        155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA  234 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence            799999999999999999999999999999999888887665544444 78999999999987 5699999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       235 ~~~~~~  240 (255)
T PRK11300        235 NGTPEE  240 (255)
T ss_pred             cCCHHH
Confidence             66554

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.5e-26  Score=154.91  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       130 SgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~  209 (352)
T PRK11144        130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA  209 (352)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence            789999999999999999999999999999999888887665444444 78999999999876 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       210 ~g~~~~i  216 (352)
T PRK11144        210 FGPLEEV  216 (352)
T ss_pred             ecCHHHH
Confidence             777654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=147.56  Aligned_cols=84  Identities=23%  Similarity=0.257  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.....++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  219 (255)
T PRK11231        140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ  219 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence            79999999999999999999999999999999988888766544334588999999999986 4699999999998864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       220 ~~~~~~  225 (255)
T PRK11231        220 GTPEEV  225 (255)
T ss_pred             cCHHHh
Confidence            665543

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.7e-26  Score=150.53  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .+.|+|++||+++.+ ..||++++|++|++..
T Consensus       152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~  231 (289)
T PRK13645        152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS  231 (289)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544433 378999999999886 5699999999999864


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       232 ~g~~~~  237 (289)
T PRK13645        232 IGSPFE  237 (289)
T ss_pred             eCCHHH
Confidence             66554

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.93  E-value=8.8e-26  Score=150.16  Aligned_cols=83  Identities=17%  Similarity=0.235  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus       140 S~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l-~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g  218 (275)
T cd03289         140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYD  218 (275)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH-HHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecC
Confidence            689999999999999999999999999999999887776554 44456899999999998877799999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       219 ~~~~l  223 (275)
T cd03289         219 SIQKL  223 (275)
T ss_pred             CHHHH
Confidence            88775

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.93  E-value=1.4e-25  Score=143.14  Aligned_cols=78  Identities=23%  Similarity=0.178  Sum_probs=68.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++.+. .+|++++|++|++..
T Consensus       128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~  206 (208)
T cd03268         128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE  206 (208)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence            789999999999999999999999999999999888887665444446789999999999875 699999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.93  E-value=9.4e-26  Score=147.24  Aligned_cols=82  Identities=24%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  224 (247)
T TIGR00972       146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ-ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY  224 (247)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876544 444458999999999986 4699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       225 ~~~~~  229 (247)
T TIGR00972       225 GPTEQ  229 (247)
T ss_pred             CCHHH
Confidence            66654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=147.93  Aligned_cols=83  Identities=23%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+.+.+. ...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       156 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  234 (258)
T PRK14268        156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM-NLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF  234 (258)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876544 444578999999999887 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       235 ~~~~~~  240 (258)
T PRK14268        235 GQTRQI  240 (258)
T ss_pred             CCHHHH
Confidence            666543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.93  E-value=8.8e-26  Score=154.32  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+++.+.+...+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       133 SgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~  212 (354)
T TIGR02142       133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA  212 (354)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence            789999999999999999999999999999999888888765544444 78999999999887 4699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       213 ~g~~~~~  219 (354)
T TIGR02142       213 AGPIAEV  219 (354)
T ss_pred             ECCHHHH
Confidence             766553

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.93  E-value=1.2e-25  Score=143.78  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=66.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+++.+. .||++++|++|+
T Consensus       139 S~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       139 SGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            789999999999999999999999999999999888887765543345889999999999875 599999999874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.93  E-value=1.4e-25  Score=146.24  Aligned_cols=82  Identities=18%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh--CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH--VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.+.+.+......+.|+|++||+++.+..  +|++++|++|++..
T Consensus       147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~  226 (248)
T PRK09580        147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK  226 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence            7899999999999999999999999999999998888876543333457899999999988754  79999999998865


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+++
T Consensus       227 ~g~~~  231 (248)
T PRK09580        227 SGDFT  231 (248)
T ss_pred             eCCHH
Confidence             6654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.6e-26  Score=156.55  Aligned_cols=84  Identities=23%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+.+.+.+... .++|+|++||+++.+ ..||++++|++|++..
T Consensus       166 SgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~  245 (400)
T PRK10070        166 SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ  245 (400)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence            79999999999999999999999999999999988888776554433 478999999999886 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       246 ~g~~~~l  252 (400)
T PRK10070        246 VGTPDEI  252 (400)
T ss_pred             cCCHHHH
Confidence             766553

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.2e-25  Score=149.20  Aligned_cols=84  Identities=24%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ +.|++++||+++.+ ..||++++|++|++..
T Consensus       139 S~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~  218 (277)
T PRK13652        139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA  218 (277)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence            799999999999999999999999999999999888887665444444 78999999999987 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       219 ~g~~~~~  225 (277)
T PRK13652        219 YGTVEEI  225 (277)
T ss_pred             ECCHHHH
Confidence             776654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=146.04  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+...+.+.+.+.....+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~  218 (241)
T PRK10895        139 SGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH  218 (241)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence            79999999999999999999999999999999988877665433334588999999999876 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       219 ~~~~~~  224 (241)
T PRK10895        219 GTPTEI  224 (241)
T ss_pred             CCHHHH
Confidence            666543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=147.44  Aligned_cols=83  Identities=23%  Similarity=0.255  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  230 (254)
T PRK14273        152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII-NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE  230 (254)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876544 445578999999999986 4699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       231 g~~~~~  236 (254)
T PRK14273        231 SSTDEL  236 (254)
T ss_pred             CCHHHH
Confidence            766543

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.2e-25  Score=149.52  Aligned_cols=83  Identities=20%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.+.+.+++.+.+...+ |.|++++||+++.+..||+++++++|++.. 
T Consensus       142 S~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~  221 (279)
T PRK13635        142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE  221 (279)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999988887765544444 789999999998876799999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       222 g~~~~  226 (279)
T PRK13635        222 GTPEE  226 (279)
T ss_pred             CCHHH
Confidence            76554

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=146.43  Aligned_cols=84  Identities=21%  Similarity=0.186  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+. .||++++|++|++..
T Consensus       133 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  212 (241)
T PRK14250        133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE  212 (241)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence            78999999999999999999999999999999988887765544333 3889999999999875 699999999998864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       213 ~~~~~~~  219 (241)
T PRK14250        213 YAKTYDF  219 (241)
T ss_pred             eCCHHHH
Confidence             665543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.93  E-value=1.4e-25  Score=144.95  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||+++++++|++..
T Consensus       133 S~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~  212 (230)
T TIGR03410       133 SGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA  212 (230)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665544443 789999999999876 599999999998875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       213 ~~~~~~~  219 (230)
T TIGR03410       213 SGAGDEL  219 (230)
T ss_pred             ECCHHHc
Confidence             666543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=147.16  Aligned_cols=82  Identities=23%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       151 SgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14242        151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELI-HELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV  229 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4445578999999999987 5699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       230 g~~~~  234 (253)
T PRK14242        230 GPTEQ  234 (253)
T ss_pred             CCHHH
Confidence            66554

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=149.49  Aligned_cols=84  Identities=17%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.+...+.+.+.+... .|.|++++||+++.+..||++++|++|++.. 
T Consensus       146 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~  225 (280)
T PRK13633        146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME  225 (280)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence            78999999999999999999999999999999998888766544434 4899999999999876699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       226 g~~~~~  231 (280)
T PRK13633        226 GTPKEI  231 (280)
T ss_pred             cCHHHH
Confidence            776653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.93  E-value=1.1e-25  Score=146.47  Aligned_cols=83  Identities=23%  Similarity=0.281  Sum_probs=71.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus       137 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  216 (242)
T cd03295         137 SGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ  216 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665444343 78999999999876 5699999999999864


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       217 ~~~~~~  222 (242)
T cd03295         217 VGTPDE  222 (242)
T ss_pred             ecCHHH
Confidence             65543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.93  E-value=1.6e-25  Score=143.71  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=72.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       135 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  213 (220)
T cd03263         135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI  213 (220)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence            789999999999999999999999999999999888887654 44445689999999999875 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       214 ~~~~~~  219 (220)
T cd03263         214 GSPQEL  219 (220)
T ss_pred             CCHHHc
Confidence            776654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.93  E-value=1.5e-25  Score=145.47  Aligned_cols=82  Identities=28%  Similarity=0.362  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++||||++.+|++++|||||++||+.+++.+.+.+... .++.++|++||+++.+..||++++|++|++.. +
T Consensus       141 S~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~  219 (238)
T cd03249         141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQG  219 (238)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeC
Confidence            789999999999999999999999999999999888887665443 47889999999998877899999999999875 5


Q ss_pred             cccc
Q psy1506          80 WVEE   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +.++
T Consensus       220 ~~~~  223 (238)
T cd03249         220 THDE  223 (238)
T ss_pred             CHHH
Confidence            5543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.93  E-value=2e-25  Score=142.75  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+... .+.|+|++||+++.+. .||++++|++|++..
T Consensus       132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            79999999999999999999999999999999988888776554444 3789999999998865 599999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.6e-25  Score=148.46  Aligned_cols=84  Identities=17%  Similarity=0.195  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...++.|++++||+++.+. .||++++|++|++.. 
T Consensus       139 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~  218 (275)
T PRK13639        139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE  218 (275)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887765544345899999999999875 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       219 g~~~~~  224 (275)
T PRK13639        219 GTPKEV  224 (275)
T ss_pred             CCHHHH
Confidence            776653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-25  Score=148.74  Aligned_cols=84  Identities=17%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+..||++++|++|++.. 
T Consensus       142 S~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~  221 (277)
T PRK13642        142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE  221 (277)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887665444444 899999999999876799999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       222 g~~~~~  227 (277)
T PRK13642        222 AAPSEL  227 (277)
T ss_pred             CCHHHH
Confidence            776653

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.93  E-value=9.9e-26  Score=155.60  Aligned_cols=85  Identities=16%  Similarity=0.258  Sum_probs=75.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |||||||++||||++-+|++++||||||+||......+.+.+..... .|.+.+++|||+..++ .|+++++|++|++++
T Consensus       428 SGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE  507 (534)
T COG4172         428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE  507 (534)
T ss_pred             CcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee
Confidence            79999999999999999999999999999999998888876544333 4789999999999985 599999999999987


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |+.++++
T Consensus       508 ~G~~~~if  515 (534)
T COG4172         508 QGPTEAVF  515 (534)
T ss_pred             eCCHHHHh
Confidence             8887763

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-25  Score=147.59  Aligned_cols=84  Identities=20%  Similarity=0.215  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+..||++++|++|++.. 
T Consensus       144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~  223 (269)
T PRK13648        144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE  223 (269)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887665444333 789999999998876699999999999874 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       224 g~~~~~  229 (269)
T PRK13648        224 GTPTEI  229 (269)
T ss_pred             cCHHHH
Confidence            766543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.93  E-value=1.3e-25  Score=161.24  Aligned_cols=83  Identities=24%  Similarity=0.393  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.. |
T Consensus       473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l-~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g  551 (585)
T TIGR01192       473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG  551 (585)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887654 44556899999999999888899999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       552 ~~~~l  556 (585)
T TIGR01192       552 SFQEL  556 (585)
T ss_pred             CHHHH
Confidence            76654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.93  E-value=2.1e-25  Score=142.61  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus       138 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            789999999999999999999999999999999888887665443345889999999999875 5899999998863

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.8e-25  Score=144.81  Aligned_cols=83  Identities=18%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+..... .+.|+|++||+++.+. .||++++|++|++.+
T Consensus       131 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~  210 (232)
T PRK10771        131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW  210 (232)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544434 3789999999999875 589999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       211 ~g~~~~  216 (232)
T PRK10771        211 DGPTDE  216 (232)
T ss_pred             eCCHHH
Confidence             66554

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.92  E-value=2.6e-25  Score=142.60  Aligned_cols=78  Identities=22%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+ ..+|++++|++|++..
T Consensus       138 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~  216 (218)
T cd03266         138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY  216 (218)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence            78999999999999999999999999999999988888766544434588999999999886 4699999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.92  E-value=1.6e-25  Score=146.48  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .+.|+|++||+.+.+. .||++++|++|++..
T Consensus       150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~  229 (253)
T TIGR02323       150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE  229 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888776544434 3789999999999875 699999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       230 ~~~~~~  235 (253)
T TIGR02323       230 SGLTDQ  235 (253)
T ss_pred             ECCHHH
Confidence             66544

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.92  E-value=2.1e-25  Score=142.93  Aligned_cols=78  Identities=23%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ |.|+|++||+.+.+ ..||++++|++|++..
T Consensus       133 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  212 (214)
T cd03297         133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY  212 (214)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            789999999999999999999999999999999888887665444444 78999999999987 4699999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=146.15  Aligned_cols=83  Identities=23%  Similarity=0.227  Sum_probs=72.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  226 (250)
T PRK14247        148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL-ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW  226 (250)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence            7899999999999999999999999999999998888876654 444578999999999987 4699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       227 g~~~~~  232 (250)
T PRK14247        227 GPTREV  232 (250)
T ss_pred             CCHHHH
Confidence            666543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.92  E-value=2.2e-25  Score=144.23  Aligned_cols=82  Identities=24%  Similarity=0.370  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+..||++++|++|++.. +
T Consensus       140 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~  218 (234)
T cd03251         140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERG  218 (234)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeC
Confidence            789999999999999999999999999999999888887655 44446889999999998876799999999998865 6


Q ss_pred             cccc
Q psy1506          80 WVEE   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      ++++
T Consensus       219 ~~~~  222 (234)
T cd03251         219 THEE  222 (234)
T ss_pred             CHHH
Confidence            6554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.92  E-value=2.2e-25  Score=144.95  Aligned_cols=83  Identities=14%  Similarity=0.282  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+++.+ ..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       145 S~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~  223 (242)
T TIGR03411       145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE  223 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence            789999999999999999999999999999999888887654 44445789999999999875 699999999999874 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       224 ~~~~~~  229 (242)
T TIGR03411       224 GSLDQV  229 (242)
T ss_pred             CCHHHH
Confidence            666543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.9e-25  Score=147.28  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~  228 (265)
T PRK10575        149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA  228 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            799999999999999999999999999999999888887665443333 78999999999987 4699999999999864


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       229 ~~~~~~  234 (265)
T PRK10575        229 QGTPAE  234 (265)
T ss_pred             ecCHHH
Confidence             66554

>KOG0057|consensus

Probab=99.92  E-value=1.8e-25  Score=157.82  Aligned_cols=84  Identities=27%  Similarity=0.434  Sum_probs=77.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||+++|||++++|+|+++|||||+||.++.+++++.+.. ...++|+|+|-|+++.+..||+|+++++|.+.+ |
T Consensus       489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~g  567 (591)
T KOG0057|consen  489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYG  567 (591)
T ss_pred             ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEec
Confidence            79999999999999999999999999999999999999987654 557899999999999999999999999999875 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.++++
T Consensus       568 th~ell  573 (591)
T KOG0057|consen  568 THSELL  573 (591)
T ss_pred             cHHHHh
Confidence            877653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.3e-25  Score=144.96  Aligned_cols=83  Identities=17%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+.+.+. .+|++++|++|++.. 
T Consensus       143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~  222 (242)
T PRK11124        143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654433335889999999999875 599999999998865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       223 ~~~~~  227 (242)
T PRK11124        223 GDASC  227 (242)
T ss_pred             CCHHH
Confidence            66544

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.92  E-value=2.9e-25  Score=145.06  Aligned_cols=82  Identities=20%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. . +|++++|++|++..
T Consensus       153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~  232 (252)
T CHL00131        153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK  232 (252)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence            789999999999999999999999999999999888887665443345889999999998875 4 79999999999875


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+++
T Consensus       233 ~~~~~  237 (252)
T CHL00131        233 TGDAE  237 (252)
T ss_pred             ecChh
Confidence             6654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.92  E-value=2.4e-25  Score=139.95  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i   76 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus       106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            789999999999999999999999999999999888887665443345789999999998875 5999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.92  E-value=1.4e-25  Score=163.30  Aligned_cols=83  Identities=22%  Similarity=0.344  Sum_probs=74.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||+++|||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.+ |
T Consensus       595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g  673 (694)
T TIGR01846       595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG  673 (694)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence            799999999999999999999999999999999988887665 44456899999999999988899999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       674 ~~~~l  678 (694)
T TIGR01846       674 RHEEL  678 (694)
T ss_pred             CHHHH
Confidence            87664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.92  E-value=3e-25  Score=142.84  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=68.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.....++.|+|++||+++.+. .||++++|++|++..
T Consensus       139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        139 SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            789999999999999999999999999999999888887655443345789999999999875 589999999998764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.3e-25  Score=157.57  Aligned_cols=84  Identities=12%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+++.+.....+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~  486 (506)
T PRK13549        407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD  486 (506)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            79999999999999999999999999999999988888766544445689999999999987 4699999999999864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       487 ~~~~~~  492 (506)
T PRK13549        487 LINHNL  492 (506)
T ss_pred             eccccC
Confidence            666654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.5e-25  Score=161.92  Aligned_cols=84  Identities=11%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++|||||||++||+.+...+++.+.+...+ |.|+|++|||++.+. .||++++|++|++.+
T Consensus       465 SgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~  544 (623)
T PRK10261        465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE  544 (623)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888765554444 789999999999874 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       545 ~g~~~~i  551 (623)
T PRK10261        545 IGPRRAV  551 (623)
T ss_pred             ecCHHHH
Confidence             776654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.92  E-value=1.8e-25  Score=147.63  Aligned_cols=83  Identities=18%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus       151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~  230 (267)
T PRK15112        151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE  230 (267)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence            789999999999999999999999999999999888887665544343 789999999999875 599999999998865


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       231 ~~~~~~  236 (267)
T PRK15112        231 RGSTAD  236 (267)
T ss_pred             cCCHHH
Confidence             65544

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.8e-25  Score=157.17  Aligned_cols=84  Identities=14%  Similarity=0.196  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~  226 (510)
T PRK09700        147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS  226 (510)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence            799999999999999999999999999999999988888765544446889999999999875 699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       227 g~~~~~  232 (510)
T PRK09700        227 GMVSDV  232 (510)
T ss_pred             cchhhC
Confidence            777664

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.92  E-value=2.6e-25  Score=145.89  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       139 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (256)
T TIGR03873       139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA  218 (256)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence            78999999999999999999999999999999988888766544434578999999999987 5699999999998875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       219 g~~~~~  224 (256)
T TIGR03873       219 GPPREV  224 (256)
T ss_pred             cCHHHh
Confidence            766553

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.92  E-value=2.6e-25  Score=144.06  Aligned_cols=82  Identities=28%  Similarity=0.371  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+... .++.|+|++||+.+.+..||++++|++|++.. |
T Consensus       139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~  217 (236)
T cd03253         139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERG  217 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeC
Confidence            789999999999999999999999999999999888887665443 34889999999999886799999999998865 5


Q ss_pred             cccc
Q psy1506          80 WVEE   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      ++++
T Consensus       218 ~~~~  221 (236)
T cd03253         218 THEE  221 (236)
T ss_pred             CHHH
Confidence            5544

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=1.7e-25  Score=158.95  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus       158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~  237 (529)
T PRK15134        158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE  237 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765444343 789999999999874 699999999999864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |.++++
T Consensus       238 ~g~~~~~  244 (529)
T PRK15134        238 QNRAATL  244 (529)
T ss_pred             eCCHHHH
Confidence             665543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.92  E-value=3.3e-25  Score=143.03  Aligned_cols=77  Identities=25%  Similarity=0.246  Sum_probs=67.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+.+.+..+|++++|++|++.
T Consensus       148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~  225 (228)
T PRK10584        148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ  225 (228)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence            789999999999999999999999999999999888887665443343 78999999999887779999999999875

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.92  E-value=3.2e-25  Score=141.20  Aligned_cols=79  Identities=19%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh--hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN--HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~--~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+++.+.+...++.|+|++||+++.+.  .+|++++|++|++..
T Consensus       106 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  185 (200)
T cd03217         106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK  185 (200)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665444345789999999999876  699999999998875


Q ss_pred             -C
Q psy1506          79 -G   79 (85)
Q Consensus        79 -g   79 (85)
                       |
T Consensus       186 ~~  187 (200)
T cd03217         186 SG  187 (200)
T ss_pred             Ec
Confidence             5

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.92  E-value=2.6e-25  Score=143.53  Aligned_cols=82  Identities=23%  Similarity=0.386  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+. .+.++.|+|++||+++.+..||++++|++|++.. +
T Consensus       141 S~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~  219 (229)
T cd03254         141 SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE-KLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEG  219 (229)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeC
Confidence            7899999999999999999999999999999998888876654 4456889999999998877799999999999875 6


Q ss_pred             cccc
Q psy1506          80 WVEE   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +.++
T Consensus       220 ~~~~  223 (229)
T cd03254         220 THDE  223 (229)
T ss_pred             CHHH
Confidence            5544

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.92  E-value=3.4e-25  Score=143.08  Aligned_cols=83  Identities=24%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||+++++ +|++.. 
T Consensus       115 S~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~  193 (223)
T TIGR03771       115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD  193 (223)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence            78999999999999999999999999999999998888876544444688999999999986 469999999 788764 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       194 ~~~~~~  199 (223)
T TIGR03771       194 GTPQQL  199 (223)
T ss_pred             cCHHHh
Confidence            666553

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.92  E-value=2.5e-25  Score=145.91  Aligned_cols=83  Identities=18%  Similarity=0.205  Sum_probs=71.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+... .|.|++++||+++.+ ..||++++|++|++..
T Consensus       142 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~  221 (254)
T PRK10418        142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE  221 (254)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544334 378999999999987 4699999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       222 ~~~~~~  227 (254)
T PRK10418        222 QGDVET  227 (254)
T ss_pred             ecCHHH
Confidence             66554

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.92  E-value=1.8e-25  Score=159.94  Aligned_cols=83  Identities=24%  Similarity=0.357  Sum_probs=74.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..+|++++|++|++.. |
T Consensus       453 SgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g  531 (569)
T PRK10789        453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL-RQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRG  531 (569)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEec
Confidence            789999999999999999999999999999999988887664 44457899999999999888899999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       532 ~~~~l  536 (569)
T PRK10789        532 NHDQL  536 (569)
T ss_pred             CHHHH
Confidence            76654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=1.3e-25  Score=173.29  Aligned_cols=84  Identities=40%  Similarity=0.684  Sum_probs=76.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||++||||++++|+++|||||||+||+++.+.+++.++....+++|+|++||+++.+..+|+|++|++|++.+ |
T Consensus       742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G  821 (1495)
T PLN03232        742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG  821 (1495)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence            799999999999999999999999999999999999898877665557899999999999999999999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+++
T Consensus       822 t~~eL  826 (1495)
T PLN03232        822 TFAEL  826 (1495)
T ss_pred             CHHHH
Confidence            76654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.1e-25  Score=146.26  Aligned_cols=84  Identities=21%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+++.+.+... .+.|+|++||+++.+ ..||++++|++|++..
T Consensus       145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  224 (265)
T PRK10253        145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA  224 (265)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999998888776554434 378999999999876 5699999999999864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       225 ~g~~~~~  231 (265)
T PRK10253        225 QGAPKEI  231 (265)
T ss_pred             eCCHHHH
Confidence             666543

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.7e-25  Score=145.27  Aligned_cols=83  Identities=23%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14239        150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY  228 (252)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4444568999999999876 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       229 g~~~~~  234 (252)
T PRK14239        229 NDTKQM  234 (252)
T ss_pred             CCHHHH
Confidence            665543

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.6e-25  Score=147.96  Aligned_cols=84  Identities=21%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+..||++++|++|++.. 
T Consensus       145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~  224 (282)
T PRK13640        145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ  224 (282)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887765444343 889999999998877799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       225 g~~~~~  230 (282)
T PRK13640        225 GSPVEI  230 (282)
T ss_pred             CCHHHH
Confidence            776653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.6e-25  Score=146.10  Aligned_cols=83  Identities=23%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  235 (259)
T PRK14274        157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI-LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC  235 (259)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999888877654 4444578999999999986 4699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       236 g~~~~~  241 (259)
T PRK14274        236 NDTNKM  241 (259)
T ss_pred             CCHHHH
Confidence            776654

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.7e-25  Score=143.42  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+... +|.|+|++||+++.+..++++++|++|++..
T Consensus       147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~  225 (233)
T PRK11629        147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA  225 (233)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544333 4889999999999887778999999998864

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-25  Score=146.33  Aligned_cols=82  Identities=22%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..+|++++|++|++.. 
T Consensus       158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  236 (260)
T PRK10744        158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF  236 (260)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876544 444578999999999887 4699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       237 g~~~~  241 (260)
T PRK10744        237 GNTDT  241 (260)
T ss_pred             CCHHH
Confidence            66554

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.92  E-value=2.8e-25  Score=148.98  Aligned_cols=83  Identities=22%  Similarity=0.272  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+++|++++|||||+|||+.+.+.+++.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       135 S~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l-~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~  213 (301)
T TIGR03522       135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVAD  213 (301)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4455578999999999987 4699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       214 g~~~~~  219 (301)
T TIGR03522       214 KKLDEL  219 (301)
T ss_pred             CCHHHH
Confidence            776653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3e-25  Score=145.13  Aligned_cols=82  Identities=21%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  229 (251)
T PRK14244        151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI-QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY  229 (251)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888777654 44455789999999999874 699999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       230 ~~~~~  234 (251)
T PRK14244        230 NTTQE  234 (251)
T ss_pred             CCHHH
Confidence            66554

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-25  Score=145.54  Aligned_cols=82  Identities=22%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  229 (253)
T PRK14267        151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV  229 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876654 444568999999999986 4699999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       230 ~~~~~  234 (253)
T PRK14267        230 GPTRK  234 (253)
T ss_pred             CCHHH
Confidence            66654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.92  E-value=2.8e-25  Score=145.36  Aligned_cols=83  Identities=20%  Similarity=0.260  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ +.|+|++||+++.+ ..+|++++|++|++..
T Consensus       148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T TIGR03005       148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE  227 (252)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887665444443 78999999999987 5699999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       228 ~g~~~~  233 (252)
T TIGR03005       228 QGKPDE  233 (252)
T ss_pred             eCCHHH
Confidence             66554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.92  E-value=3.1e-25  Score=145.90  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+...+.+.+.+..... .|.|+|++||+++.+ ..||++++|++|++..
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~  233 (262)
T PRK09984        154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY  233 (262)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544433 378999999999976 5699999999998864


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       234 ~g~~~~  239 (262)
T PRK09984        234 DGSSQQ  239 (262)
T ss_pred             eCCHHH
Confidence             76654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.92  E-value=3.7e-25  Score=141.45  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .+.|+|++||+++.+. .||++++|++|++..
T Consensus       130 S~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence            78999999999999999999999999999999988888776554433 3789999999999874 599999999998753

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.92  E-value=4.6e-25  Score=142.11  Aligned_cols=82  Identities=21%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~  205 (223)
T TIGR03740       126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ  205 (223)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence            78999999999999999999999999999999988888766544434578999999999987 5699999999999865 


Q ss_pred             Cccc
Q psy1506          79 GWVE   82 (85)
Q Consensus        79 g~~~   82 (85)
                      |++.
T Consensus       206 ~~~~  209 (223)
T TIGR03740       206 GKIN  209 (223)
T ss_pred             cChh
Confidence            6543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.5e-25  Score=156.12  Aligned_cols=84  Identities=26%  Similarity=0.395  Sum_probs=76.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||++||++|||+|++|+++++|||||.|||+.+.++++..+.+ ..+|+|+++|||++..++.+|+|++|++|++.+ |
T Consensus       476 SGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G  554 (573)
T COG4987         476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG  554 (573)
T ss_pred             CchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCeeeecC
Confidence            79999999999999999999999999999999999999977544 456899999999999999999999999999875 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      .+++++
T Consensus       555 ~~~~Ll  560 (573)
T COG4987         555 THAELL  560 (573)
T ss_pred             CHHhhh
Confidence            887753

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.92  E-value=4.2e-25  Score=137.92  Aligned_cols=76  Identities=22%  Similarity=0.275  Sum_probs=67.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i   76 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+.+.+. .+|++++|++|++
T Consensus        97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230          97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            789999999999999999999999999999999988888765544445789999999999875 6999999998863

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.92  E-value=5.2e-25  Score=140.76  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ....++.|+|++||+++.+. .+|++++|++|++..
T Consensus       132 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~  209 (211)
T cd03264         132 SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLL-SELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF  209 (211)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence            799999999999999999999999999999999888887654 44444689999999999874 699999999998753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.2e-25  Score=144.78  Aligned_cols=82  Identities=23%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||+++||||+.+|++++|||||++||+.+...+.+.+. ...++.|+|++||+++.+ ..+|++++|++|++.. 
T Consensus       144 S~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  222 (246)
T PRK14269        144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK-ELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF  222 (246)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence            7899999999999999999999999999999998888776544 444588999999999987 4699999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       223 g~~~~  227 (246)
T PRK14269        223 GESKE  227 (246)
T ss_pred             CCHHH
Confidence            66554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.92  E-value=3e-25  Score=156.33  Aligned_cols=83  Identities=24%  Similarity=0.303  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~  216 (490)
T PRK10938        137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET  216 (490)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence            799999999999999999999999999999999988888765544445889999999998874 699999999998864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       217 ~~~~~  221 (490)
T PRK10938        217 GEREE  221 (490)
T ss_pred             CCHHH
Confidence            66554

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=4.4e-25  Score=156.11  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+.+.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~  224 (506)
T PRK13549        145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT  224 (506)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence            799999999999999999999999999999999888888765544446889999999999874 699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       225 ~~~~~~  230 (506)
T PRK13549        225 RPAAGM  230 (506)
T ss_pred             cccccC
Confidence            776654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.4e-25  Score=146.56  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...+ +.|+|++||+++.+..||++++|++|++.. 
T Consensus       144 S~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~  223 (271)
T PRK13632        144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ  223 (271)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887765444444 489999999998876799999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       224 g~~~~  228 (271)
T PRK13632        224 GKPKE  228 (271)
T ss_pred             cCHHH
Confidence            66554

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3e-25  Score=146.50  Aligned_cols=82  Identities=22%  Similarity=0.246  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~  244 (268)
T PRK14248        166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY  244 (268)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH-HHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4444568999999999886 4699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       245 ~~~~~  249 (268)
T PRK14248        245 DQTEQ  249 (268)
T ss_pred             CCHHH
Confidence            66544

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=1.7e-25  Score=172.40  Aligned_cols=85  Identities=28%  Similarity=0.337  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcC----ce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNN----VS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~----g~   75 (85)
                      |+|||||++|||||+++|+|||||||||+||+++.+.+.+.+.+.. .+++|+|+|+|+++.+..||+|++|++    |+
T Consensus      1360 SGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~ 1439 (1466)
T PTZ00265       1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGS 1439 (1466)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCC
Confidence            7999999999999999999999999999999998887776554332 368999999999999999999999998    88


Q ss_pred             ee--cCcccccC
Q psy1506          76 KT--SGWVEEIL   85 (85)
Q Consensus        76 i~--~g~~~~~~   85 (85)
                      ++  .|+.++++
T Consensus      1440 iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1440 FVQAHGTHEELL 1451 (1466)
T ss_pred             EEEEecCHHHHH
Confidence            43  48887763

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.92  E-value=8.1e-25  Score=137.06  Aligned_cols=77  Identities=31%  Similarity=0.421  Sum_probs=68.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.+++.+. .+.++.|+|++||+.+.+..+|++++|++|++..
T Consensus       100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~  176 (178)
T cd03247         100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM  176 (178)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            7899999999999999999999999999999998888876654 4456789999999999887799999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.92  E-value=4.6e-25  Score=140.90  Aligned_cols=78  Identities=24%  Similarity=0.291  Sum_probs=68.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|++++||+.+.+ ..||++++|++|++..
T Consensus       130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  208 (210)
T cd03269         130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL  208 (210)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence            78999999999999999999999999999999988888766544334578999999999887 4699999999998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-25  Score=160.76  Aligned_cols=84  Identities=17%  Similarity=0.245  Sum_probs=72.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++|||||||++||+..+..+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus       170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~  249 (623)
T PRK10261        170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE  249 (623)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence            799999999999999999999999999999999888887665444334 88999999999987 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       250 ~g~~~~~  256 (623)
T PRK10261        250 TGSVEQI  256 (623)
T ss_pred             cCCHHHh
Confidence             666543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.92  E-value=6.9e-25  Score=137.68  Aligned_cols=78  Identities=24%  Similarity=0.292  Sum_probs=68.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||+++|||++.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+ ..+|++++|++|++..
T Consensus        99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  178 (180)
T cd03214          99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA  178 (180)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            789999999999999999999999999999999888887655433344 78999999999987 5699999999998753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=4.6e-25  Score=156.27  Aligned_cols=84  Identities=13%  Similarity=0.260  Sum_probs=73.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       142 SgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~  221 (510)
T PRK15439        142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS  221 (510)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            79999999999999999999999999999999988888876554444688999999999987 4699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       222 g~~~~~  227 (510)
T PRK15439        222 GKTADL  227 (510)
T ss_pred             cChHHc
Confidence            776654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=5.2e-25  Score=156.01  Aligned_cols=84  Identities=12%  Similarity=0.213  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++|||||||+|||+.+.+.+.+.+.+...+|.|+|++||+++++. .||++++|++|++.. 
T Consensus       405 SgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~  484 (510)
T PRK15439        405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA  484 (510)
T ss_pred             CcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            799999999999999999999999999999999988887765444446889999999999875 699999999998874 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      ++++++
T Consensus       485 ~~~~~~  490 (510)
T PRK15439        485 LTGAAI  490 (510)
T ss_pred             EccccC
Confidence            666553

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=3e-25  Score=157.63  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus       427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  506 (529)
T PRK15134        427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE  506 (529)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765544444 789999999999874 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       507 ~~~~~~~  513 (529)
T PRK15134        507 QGDCERV  513 (529)
T ss_pred             EcCHHHH
Confidence             766554

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.92  E-value=6e-25  Score=141.10  Aligned_cols=77  Identities=31%  Similarity=0.440  Sum_probs=67.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+++.+. .+.++.|+|++||+++....||+++++++|++..
T Consensus       142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~  218 (220)
T cd03245         142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR-QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA  218 (220)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence            7899999999999999999999999999999998888876644 4444589999999998777799999999998753

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.6e-25  Score=144.12  Aligned_cols=82  Identities=24%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..+|++++|++|++.. 
T Consensus       148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~  226 (250)
T PRK14240        148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI-QELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF  226 (250)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888877654 4445578999999999876 4699999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       227 ~~~~~  231 (250)
T PRK14240        227 GDTVD  231 (250)
T ss_pred             CCHHH
Confidence            65544

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4e-25  Score=144.47  Aligned_cols=82  Identities=30%  Similarity=0.300  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14251        149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM-ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA  227 (251)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876544 444568999999999986 4699999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       228 ~~~~~  232 (251)
T PRK14251        228 GPTEE  232 (251)
T ss_pred             CCHHH
Confidence            66554

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.92  E-value=5.2e-25  Score=144.83  Aligned_cols=83  Identities=23%  Similarity=0.232  Sum_probs=71.3

Q ss_pred             CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN-HVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~-~~d~v~~l~   72 (85)
                      |+||+||++|||||+      .+|++++|||||++||+.+.+.+.+.+.+.. .++.|+|++||+++.+. .||++++|+
T Consensus       136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  215 (258)
T PRK13548        136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH  215 (258)
T ss_pred             CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence            789999999999999      5999999999999999998888876654444 35789999999999875 699999999


Q ss_pred             Cceeec-Ccccc
Q psy1506          73 NVSKTS-GWVEE   83 (85)
Q Consensus        73 ~g~i~~-g~~~~   83 (85)
                      +|++.. |++++
T Consensus       216 ~G~i~~~~~~~~  227 (258)
T PRK13548        216 QGRLVADGTPAE  227 (258)
T ss_pred             CCEEEeeCCHHH
Confidence            998865 66554

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.92  E-value=7.7e-25  Score=141.57  Aligned_cols=78  Identities=21%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+++.+.....++.|+|++||+.+.+. .+|+++++++|++..
T Consensus       144 SgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            789999999999999999999999999999999888887765444445789999999998874 699999999998753

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=3e-25  Score=171.32  Aligned_cols=84  Identities=20%  Similarity=0.301  Sum_probs=75.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+|++||||||+||+++.+.+.+. ++...+++|+|+|+|+++.+..+|+|++|++|++.+ |
T Consensus      1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232       1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence            78999999999999999999999999999999987776544 555567899999999999999999999999999986 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus      1452 t~~eLl 1457 (1495)
T PLN03232       1452 SPQELL 1457 (1495)
T ss_pred             CHHHHH
Confidence            988763

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.3e-25  Score=144.00  Aligned_cols=82  Identities=22%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+. +..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       149 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14249        149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY  227 (251)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence            78999999999999999999999999999999988877665 444456789999999999875 589999999998864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       228 ~~~~~  232 (251)
T PRK14249        228 GRTGE  232 (251)
T ss_pred             CCHHH
Confidence            66554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=6.3e-25  Score=155.18  Aligned_cols=84  Identities=12%  Similarity=0.184  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+...++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~  222 (501)
T PRK10762        143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE  222 (501)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence            79999999999999999999999999999999998888766544444578999999999987 4699999999999864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       223 ~~~~~~  228 (501)
T PRK10762        223 REVADL  228 (501)
T ss_pred             cCcCcC
Confidence            666543

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.9e-25  Score=144.16  Aligned_cols=83  Identities=22%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~  227 (251)
T PRK14270        149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF  227 (251)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence            789999999999999999999999999999999888887654 44444689999999999864 599999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       228 ~~~~~~  233 (251)
T PRK14270        228 NKTEKI  233 (251)
T ss_pred             CCHHHH
Confidence            666543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.1e-25  Score=145.48  Aligned_cols=82  Identities=21%  Similarity=0.238  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~  243 (267)
T PRK14235        165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI-DELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV  243 (267)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888877654 4444568999999999987 4689999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       244 g~~~~  248 (267)
T PRK14235        244 GDTEK  248 (267)
T ss_pred             CCHHH
Confidence            66554

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.4e-25  Score=143.80  Aligned_cols=82  Identities=22%  Similarity=0.231  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+ +.+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       150 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14272        150 SGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM-TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH  228 (252)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888877654 44445789999999999875 599999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       229 ~~~~~  233 (252)
T PRK14272        229 GPTDQ  233 (252)
T ss_pred             CCHHH
Confidence            66654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.92  E-value=6.3e-25  Score=140.31  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=66.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i   76 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++|++
T Consensus       137 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         137 SGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            789999999999999999999999999999999888887665443345789999999999874 6999999998864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.9e-25  Score=145.08  Aligned_cols=84  Identities=19%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcC-----
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNN-----   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~-----   73 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+++.+..... .+.|+|++||+++.+. .||++++|++     
T Consensus       152 SgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~  231 (261)
T PRK14258        152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI  231 (261)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcC
Confidence            78999999999999999999999999999999988888766544323 4789999999999874 6999999998     


Q ss_pred             ceeec-Cccccc
Q psy1506          74 VSKTS-GWVEEI   84 (85)
Q Consensus        74 g~i~~-g~~~~~   84 (85)
                      |++.. |+++++
T Consensus       232 G~i~~~~~~~~~  243 (261)
T PRK14258        232 GQLVEFGLTKKI  243 (261)
T ss_pred             ceEEEeCCHHHH
Confidence            98865 776654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.92  E-value=8.2e-25  Score=144.63  Aligned_cols=84  Identities=13%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||++++|++|++..
T Consensus       153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~  232 (268)
T PRK10419        153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE  232 (268)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence            789999999999999999999999999999999888887665443333 789999999999875 699999999998865


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       233 ~g~~~~~  239 (268)
T PRK10419        233 TQPVGDK  239 (268)
T ss_pred             eCChhhc
Confidence             776654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.92  E-value=7.8e-25  Score=144.32  Aligned_cols=80  Identities=20%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .+.|+|++||+++.+ ..||++++|++|++..
T Consensus       135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~  214 (257)
T PRK11247        135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL  214 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            78999999999999999999999999999999988888766544433 478999999999986 5699999999998864


Q ss_pred             -Cc
Q psy1506          79 -GW   80 (85)
Q Consensus        79 -g~   80 (85)
                       ++
T Consensus       215 ~~~  217 (257)
T PRK11247        215 DLT  217 (257)
T ss_pred             ecc
Confidence             44

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=3.1e-25  Score=172.03  Aligned_cols=84  Identities=43%  Similarity=0.754  Sum_probs=76.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      ||||||||+||||++++|+++|||||||+||+++.+.+++.++....+++|+|++||+++.+..+|+|++|++|++.+ |
T Consensus       742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G  821 (1622)
T PLN03130        742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG  821 (1622)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence            799999999999999999999999999999999988888777665557899999999999999999999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       822 t~~eL  826 (1622)
T PLN03130        822 TYEEL  826 (1622)
T ss_pred             CHHHH
Confidence            77654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=3.7e-25  Score=171.60  Aligned_cols=84  Identities=21%  Similarity=0.311  Sum_probs=75.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+|++||||||+||.++.+.+.+. ++...+++|+|+|+|+++.+..||+|++|++|++.+ |
T Consensus      1376 SgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130       1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence            78999999999999999999999999999999987776554 555567899999999999999999999999999986 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus      1455 t~~eLl 1460 (1622)
T PLN03130       1455 TPENLL 1460 (1622)
T ss_pred             CHHHHH
Confidence            988763

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.92  E-value=3.3e-25  Score=158.18  Aligned_cols=83  Identities=24%  Similarity=0.358  Sum_probs=73.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||+++|||++++|++++|||||++||+.+.+.+++.+ ....+++|+|++||+++.+..+|+++.+++|++.+ |
T Consensus       478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l-~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g  556 (576)
T TIGR02204       478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG  556 (576)
T ss_pred             CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence            789999999999999999999999999999999888777654 44456899999999998888899999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       557 ~~~~l  561 (576)
T TIGR02204       557 THAEL  561 (576)
T ss_pred             cHHHH
Confidence            76553

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.3e-25  Score=144.49  Aligned_cols=83  Identities=22%  Similarity=0.222  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14256        150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI-EELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC  228 (252)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4444568999999999987 5699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       229 ~~~~~~  234 (252)
T PRK14256        229 GETKKI  234 (252)
T ss_pred             CCHHHH
Confidence            766543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7e-25  Score=154.95  Aligned_cols=84  Identities=14%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+...+.+++.+.+....|.|+|++|||++++ ..||++++|++|++.. 
T Consensus       398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~  477 (501)
T PRK11288        398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE  477 (501)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence            79999999999999999999999999999999998888876544445688999999999987 5699999999998764 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       478 ~~~~~~  483 (501)
T PRK11288        478 LAREQA  483 (501)
T ss_pred             EccccC
Confidence            766653

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.92  E-value=7.2e-25  Score=137.40  Aligned_cols=75  Identities=27%  Similarity=0.263  Sum_probs=66.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...+ +.|++++||+.+.+. .||++++|++|+
T Consensus       102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            789999999999999999999999999999999888887665544445 789999999999876 699999998874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=5.1e-25  Score=156.14  Aligned_cols=83  Identities=17%  Similarity=0.248  Sum_probs=72.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+... .|.|+|++||+++.+. .||++++|++|++..
T Consensus       170 SgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~  249 (520)
T TIGR03269       170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE  249 (520)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence            79999999999999999999999999999999998888776544434 4789999999999874 699999999999864


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       250 ~g~~~~  255 (520)
T TIGR03269       250 EGTPDE  255 (520)
T ss_pred             ecCHHH
Confidence             66554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.92  E-value=1.4e-24  Score=137.58  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=67.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcC-ceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNN-VSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~-g~i~   77 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++. + ..||++++|++ |++.
T Consensus       110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~  189 (192)
T cd03232         110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV  189 (192)
T ss_pred             CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence            7899999999999999999999999999999998888877654433458899999999973 4 56999999998 8876


Q ss_pred             c
Q psy1506          78 S   78 (85)
Q Consensus        78 ~   78 (85)
                      +
T Consensus       190 ~  190 (192)
T cd03232         190 Y  190 (192)
T ss_pred             e
Confidence            4

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=8.6e-25  Score=154.32  Aligned_cols=83  Identities=16%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++++. .||++++|++|++.. 
T Consensus       143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~  222 (500)
T TIGR02633       143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT  222 (500)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence            799999999999999999999999999999999988888765444446889999999999875 699999999998864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      +++++
T Consensus       223 ~~~~~  227 (500)
T TIGR02633       223 KDMST  227 (500)
T ss_pred             cCccc
Confidence            65543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8.8e-25  Score=154.07  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       136 SgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~  215 (491)
T PRK10982        136 SVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT  215 (491)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence            789999999999999999999999999999999988887765444446889999999999874 699999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       216 ~~~~~  220 (491)
T PRK10982        216 QPLAG  220 (491)
T ss_pred             cChhh
Confidence            66554

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8.2e-25  Score=142.91  Aligned_cols=82  Identities=22%  Similarity=0.235  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+.+.+. .+.++.|++++||+++.+ ..+|++++|++|++.. 
T Consensus       148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~  226 (250)
T PRK14262        148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE-ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY  226 (250)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH-HHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888776544 444578999999999876 5699999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       227 g~~~~  231 (250)
T PRK14262        227 GPTRE  231 (250)
T ss_pred             cCHHH
Confidence            76654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8.9e-25  Score=142.69  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+. +..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~  225 (249)
T PRK14253        147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL-MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH  225 (249)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            78999999999999999999999999999999988877765 444445689999999999865 599999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       226 g~~~~  230 (249)
T PRK14253        226 DDTQV  230 (249)
T ss_pred             CCHHH
Confidence            66543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.2e-24  Score=139.51  Aligned_cols=78  Identities=21%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+.+...+ +.|+|++||+.+.+. .||++++|++|++..
T Consensus       130 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~  209 (213)
T TIGR01277       130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV  209 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence            789999999999999999999999999999999888887765544443 789999999999864 699999999998864

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.9e-25  Score=144.89  Aligned_cols=82  Identities=22%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+...+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       170 S~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  248 (272)
T PRK14236        170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY  248 (272)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence            7899999999999999999999999999999998887776544 444578999999999886 5699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       249 g~~~~  253 (272)
T PRK14236        249 GDTDT  253 (272)
T ss_pred             CCHHH
Confidence            66554

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.5e-25  Score=146.07  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=71.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+. +..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~  262 (286)
T PRK14275        184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDL-IQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH  262 (286)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            78999999999999999999999999999999988888765 44454568999999999987 4699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       263 g~~~~  267 (286)
T PRK14275        263 APTAQ  267 (286)
T ss_pred             CCHHH
Confidence            66544

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.92  E-value=1.5e-24  Score=138.40  Aligned_cols=79  Identities=14%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++||||++.+|+++||||||++||+.....+.+.+. ...++.|+|++||+++.+..+|++++|++|++.. |
T Consensus       127 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g  205 (207)
T cd03369         127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIR-EEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD  205 (207)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecC
Confidence            7899999999999999999999999999999998887776544 4445889999999999876699999999998864 5


Q ss_pred             c
Q psy1506          80 W   80 (85)
Q Consensus        80 ~   80 (85)
                      +
T Consensus       206 ~  206 (207)
T cd03369         206 H  206 (207)
T ss_pred             C
Confidence            4

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.7e-25  Score=143.18  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=70.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       150 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14255        150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL-ELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF  228 (252)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876544 4444589999999999874 699999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++.+
T Consensus       229 ~~~~~  233 (252)
T PRK14255        229 ADTKQ  233 (252)
T ss_pred             CCHHH
Confidence            65543

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8e-25  Score=144.87  Aligned_cols=83  Identities=24%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .||++++|++|++.. 
T Consensus       169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  247 (271)
T PRK14238        169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV-QELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY  247 (271)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 44455789999999999864 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       248 g~~~~~  253 (271)
T PRK14238        248 DDTDKI  253 (271)
T ss_pred             CCHHHH
Confidence            766543

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=5.1e-25  Score=145.20  Aligned_cols=84  Identities=20%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      ||||+||+.|||||+.+|+++++|||+|+||...+..+...+..... .|.+.+++|||+..+.+ +|++.+|..|++++
T Consensus       111 SGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE  190 (268)
T COG4608         111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE  190 (268)
T ss_pred             CchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence            79999999999999999999999999999999998888876554443 48999999999999876 89999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+.+++
T Consensus       191 ~g~~~~~  197 (268)
T COG4608         191 IGPTEEV  197 (268)
T ss_pred             ecCHHHH
Confidence             877765

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=9.3e-25  Score=144.47  Aligned_cols=83  Identities=18%  Similarity=0.236  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+...+.+++.+......+.|+|++||+...+. .||++++|++|++.. 
T Consensus       145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~  224 (264)
T PRK13546        145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY  224 (264)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887765443345889999999999875 599999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       225 g~~~~  229 (264)
T PRK13546        225 GELDD  229 (264)
T ss_pred             CCHHH
Confidence            76654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=5.8e-25  Score=155.86  Aligned_cols=84  Identities=19%  Similarity=0.287  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ |.|+|++||+++.+. .||++++|++|++..
T Consensus       429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  508 (520)
T TIGR03269       429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK  508 (520)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765444343 789999999999874 699999999999865


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       509 ~g~~~~~  515 (520)
T TIGR03269       509 IGDPEEI  515 (520)
T ss_pred             ECCHHHH
Confidence             776553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.92  E-value=9.9e-25  Score=155.83  Aligned_cols=78  Identities=23%  Similarity=0.308  Sum_probs=69.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |||||||++||||++.+|+++||||||++||+++.+.+.+.+.+.. .+++|+|++||+++.+..+|++++|++|++.+
T Consensus       472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~  550 (555)
T TIGR01194       472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK  550 (555)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence            7999999999999999999999999999999999888876655433 46899999999998888899999999998864

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9e-25  Score=144.89  Aligned_cols=83  Identities=25%  Similarity=0.327  Sum_probs=71.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-------
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN-------   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~-------   72 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+. .+.++.|+|++||+++.+ ..||++++|+       
T Consensus       163 SgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~  241 (274)
T PRK14265        163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL-ELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYG  241 (274)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence            7899999999999999999999999999999998888876544 444568999999999987 4699999997       


Q ss_pred             --Cceeec-Cccccc
Q psy1506          73 --NVSKTS-GWVEEI   84 (85)
Q Consensus        73 --~g~i~~-g~~~~~   84 (85)
                        +|++.. |+++++
T Consensus       242 ~~~G~~~~~g~~~~~  256 (274)
T PRK14265        242 KRRGKLVEFSPTEQM  256 (274)
T ss_pred             ccCceEEEeCCHHHH
Confidence              688765 776654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=143.99  Aligned_cols=83  Identities=20%  Similarity=0.259  Sum_probs=70.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+ ..||+++++ +|++.. 
T Consensus       144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~  222 (272)
T PRK15056        144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS  222 (272)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence            78999999999999999999999999999999988888766544334588999999999886 568999877 788764 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       223 g~~~~~  228 (272)
T PRK15056        223 GPTETT  228 (272)
T ss_pred             cCHHhc
Confidence            776653

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.92  E-value=1.7e-24  Score=137.36  Aligned_cols=78  Identities=17%  Similarity=0.141  Sum_probs=67.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc-hh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-YL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+++.+.+...++.|+|++||+++ .+ ..+|++++|++|++..
T Consensus       113 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~  192 (194)
T cd03213         113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY  192 (194)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence            789999999999999999999999999999999888887665443345899999999996 45 4699999999998753

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=1e-24  Score=154.09  Aligned_cols=84  Identities=15%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  476 (501)
T PRK10762        397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE  476 (501)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            79999999999999999999999999999999998888876554444688999999999987 4699999999998864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      ++++++
T Consensus       477 ~~~~~~  482 (501)
T PRK10762        477 FTREQA  482 (501)
T ss_pred             eccccC
Confidence            665553

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.92  E-value=1.1e-24  Score=142.67  Aligned_cols=83  Identities=18%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhc-------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYK-------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~-------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~   72 (85)
                      |+||+||++|||||+.       +|+++||||||++||+.+.+.+.+.+.....++.|+|++||+++.+ ..||++++|+
T Consensus       128 S~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~  207 (248)
T PRK03695        128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLK  207 (248)
T ss_pred             CHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            7899999999999997       6799999999999999988888765544434588999999999876 5699999999


Q ss_pred             Cceeec-Ccccc
Q psy1506          73 NVSKTS-GWVEE   83 (85)
Q Consensus        73 ~g~i~~-g~~~~   83 (85)
                      +|++.. |++++
T Consensus       208 ~G~i~~~g~~~~  219 (248)
T PRK03695        208 QGKLLASGRRDE  219 (248)
T ss_pred             CCEEEEECCHHH
Confidence            999865 66554

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.92  E-value=1.2e-24  Score=145.15  Aligned_cols=84  Identities=37%  Similarity=0.620  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.....+++.++..+.++.|+|++||+++.+..||++++|++|++.. |
T Consensus       161 SgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g  240 (282)
T cd03291         161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG  240 (282)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999877777655444455789999999998887799999999999864 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       241 ~~~~~  245 (282)
T cd03291         241 TFSEL  245 (282)
T ss_pred             CHHHH
Confidence            66543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.91  E-value=6.4e-25  Score=169.72  Aligned_cols=84  Identities=19%  Similarity=0.315  Sum_probs=75.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+|++||||||+||+++.+.+.+. ++...+++|+|+|+|+++.+..+|+|++|++|++.+ |
T Consensus      1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957      1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence            78999999999999999999999999999999987766544 555567899999999999999999999999999986 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus      1502 ~~~eLl 1507 (1522)
T TIGR00957      1502 APSNLL 1507 (1522)
T ss_pred             CHHHHH
Confidence            988763

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.2e-24  Score=143.58  Aligned_cols=83  Identities=24%  Similarity=0.240  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-------
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN-------   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~-------   72 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|+       
T Consensus       153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~  231 (264)
T PRK14243        153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM-HELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG  231 (264)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence            789999999999999999999999999999999888877654 4444568999999999886 5699999998       


Q ss_pred             --Cceeec-Cccccc
Q psy1506          73 --NVSKTS-GWVEEI   84 (85)
Q Consensus        73 --~g~i~~-g~~~~~   84 (85)
                        +|++.. |+++++
T Consensus       232 ~~~g~i~~~~~~~~~  246 (264)
T PRK14243        232 GRYGYLVEFDRTEKI  246 (264)
T ss_pred             ccCceEEEeCCHHHH
Confidence              688865 666554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.6e-24  Score=153.37  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||||+.+|+++||||||++||+...+.+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus       411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  489 (510)
T PRK09700        411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ  489 (510)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999988888876544445688999999999886 5699999999998864

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.1e-24  Score=144.02  Aligned_cols=72  Identities=24%  Similarity=0.295  Sum_probs=64.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~   73 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++
T Consensus       156 S~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~  228 (269)
T PRK14259        156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETM-HELKKNFTIVIVTHNMQQAVRVSDMTAFFNA  228 (269)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence            789999999999999999999999999999999888887654 4445578999999999887 56999999996

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.91  E-value=1.2e-24  Score=140.98  Aligned_cols=82  Identities=23%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||+|||+.+.+.+.+.+.....+ +.|+|++||+++.+ ..||++++|++|++..
T Consensus       132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~  211 (232)
T cd03300         132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ  211 (232)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence            789999999999999999999999999999999888887665443333 88999999999986 4699999999998864


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+.+
T Consensus       212 ~~~~~  216 (232)
T cd03300         212 IGTPE  216 (232)
T ss_pred             cCCHH
Confidence             5544

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.3e-24  Score=142.78  Aligned_cols=82  Identities=24%  Similarity=0.255  Sum_probs=70.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc------C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN------N   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~------~   73 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+ ..+.++.|+|++||+++.+ ..||++++|+      +
T Consensus       150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~  228 (258)
T PRK14241        150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKP  228 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCC
Confidence            789999999999999999999999999999999888887654 4444568999999999986 5699999996      7


Q ss_pred             ceeec-Ccccc
Q psy1506          74 VSKTS-GWVEE   83 (85)
Q Consensus        74 g~i~~-g~~~~   83 (85)
                      |++.. |++++
T Consensus       229 g~i~~~~~~~~  239 (258)
T PRK14241        229 GRLVEIDDTEK  239 (258)
T ss_pred             ceEEecCCHHH
Confidence            88865 66654

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.91  E-value=2.4e-24  Score=139.61  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+||++|||||+.+|  +++||||||++||+.+...+++.+.+...+|.|+|++||+++.+..||++++|      +
T Consensus       139 SgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~  218 (226)
T cd03270         139 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVH  218 (226)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCcccc
Confidence            789999999999999998  59999999999999998888876554444688999999999887789999999      7


Q ss_pred             Cceeec
Q psy1506          73 NVSKTS   78 (85)
Q Consensus        73 ~g~i~~   78 (85)
                      +|++++
T Consensus       219 ~G~iv~  224 (226)
T cd03270         219 GGEIVA  224 (226)
T ss_pred             CCEEEe
Confidence            777764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.91  E-value=2.4e-24  Score=140.09  Aligned_cols=78  Identities=13%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++++. .||++++|++|++..
T Consensus       155 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  234 (236)
T cd03267         155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY  234 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence            789999999999999999999999999999999988887765443343 789999999999874 599999999998753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.91  E-value=1.7e-24  Score=142.30  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=71.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+++.+ ..+.++.|+|++||+++.+..||++++|++|++.. |
T Consensus       158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g  236 (257)
T cd03288         158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV-MTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECD  236 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeC
Confidence            689999999999999999999999999999999877776554 44456889999999999877799999999999875 6


Q ss_pred             cccc
Q psy1506          80 WVEE   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      ++++
T Consensus       237 ~~~~  240 (257)
T cd03288         237 TPEN  240 (257)
T ss_pred             CHHH
Confidence            6654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.91  E-value=2.4e-24  Score=134.25  Aligned_cols=74  Identities=24%  Similarity=0.385  Sum_probs=65.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~   75 (85)
                      |+||+||++||||++.+|++++|||||++||+.....+.+.+ ..+.++.|++++||+++.+..||++++|++|+
T Consensus        98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228          98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            789999999999999999999999999999999888887654 44455789999999999876699999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.6e-24  Score=143.06  Aligned_cols=83  Identities=27%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+ ..+.++.++|++||+++.+ ..||++++|++|++.. 
T Consensus       165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  243 (267)
T PRK14237        165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM-FELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY  243 (267)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4445578999999999886 5699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       244 g~~~~~  249 (267)
T PRK14237        244 DKTRNI  249 (267)
T ss_pred             CCHHHH
Confidence            766543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2e-24  Score=152.26  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||+|||+.+.+.+++.+.....+|.|+|++||+++++ ..||++++|++|++.. 
T Consensus       393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~  472 (491)
T PRK10982        393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI  472 (491)
T ss_pred             CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence            79999999999999999999999999999999999988876544445689999999999987 4699999999998863 


Q ss_pred             Ccc
Q psy1506          79 GWV   81 (85)
Q Consensus        79 g~~   81 (85)
                      +++
T Consensus       473 ~~~  475 (491)
T PRK10982        473 VDT  475 (491)
T ss_pred             Ecc
Confidence            443

>KOG0054|consensus

Probab=99.91  E-value=7.2e-25  Score=166.90  Aligned_cols=84  Identities=57%  Similarity=0.878  Sum_probs=79.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      ||||||||++|||+++++++++||.|+|++|.+..+.+++.++....+++|+|+|||..++++.+|.|++|++|++.. |
T Consensus       645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~G  724 (1381)
T KOG0054|consen  645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESG  724 (1381)
T ss_pred             cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEeccc
Confidence            799999999999999999999999999999999999999999977778999999999999999999999999999986 9


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++|+
T Consensus       725 ty~el  729 (1381)
T KOG0054|consen  725 TYEEL  729 (1381)
T ss_pred             CHHHH
Confidence            88875

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.91  E-value=2e-24  Score=153.91  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=69.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||+++|||++++|++++|||||++||+++.+.+.+.+.+... +++|+|++||+++.+..+|++++|++|++.+
T Consensus       451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e  529 (547)
T PRK10522        451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE  529 (547)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence            78999999999999999999999999999999988888766544433 4789999999998888899999999999874

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=141.59  Aligned_cols=82  Identities=21%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .+|++++|++|++.. 
T Consensus       151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14261        151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLI-EDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF  229 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence            789999999999999999999999999999999888887654 44444689999999999874 699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       230 g~~~~  234 (253)
T PRK14261        230 DKTTQ  234 (253)
T ss_pred             CCHHH
Confidence            66554

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=143.58  Aligned_cols=83  Identities=23%  Similarity=0.259  Sum_probs=71.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+ ..+.++.|+|++||+++.+ ..+|++++|++|++.. 
T Consensus       165 SgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~  243 (276)
T PRK14271        165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE  243 (276)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999888887654 4444458999999999986 4699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       244 g~~~~~  249 (276)
T PRK14271        244 GPTEQL  249 (276)
T ss_pred             CCHHHH
Confidence            666543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.8e-24  Score=140.66  Aligned_cols=83  Identities=25%  Similarity=0.265  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+ ..||++++|++|++.+
T Consensus       132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~  211 (237)
T TIGR00968       132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ  211 (237)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887765443444 78999999999986 4599999999999875


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |+.++
T Consensus       212 ~~~~~~  217 (237)
T TIGR00968       212 IGSPDE  217 (237)
T ss_pred             ecCHHH
Confidence             66554

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.91  E-value=3.5e-24  Score=138.33  Aligned_cols=78  Identities=19%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc-chh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL-QYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~-~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||+++||||+.+|++++|||||++||+.+...+.+.+.+...++.|+|++||+. +.+ ..||++++|++|++..
T Consensus       145 S~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  224 (226)
T cd03234         145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY  224 (226)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence            78999999999999999999999999999999988888766544334578999999998 454 6799999999998764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.91  E-value=2.2e-24  Score=152.27  Aligned_cols=78  Identities=14%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.....+|.|+|++||+++++ ..||++++|++|++..
T Consensus       405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~  483 (500)
T TIGR02633       405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG  483 (500)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999988888766544445688999999999987 4699999999998764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.91  E-value=2.1e-24  Score=141.80  Aligned_cols=83  Identities=23%  Similarity=0.332  Sum_probs=69.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceee-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKT-   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~-   77 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+++.+.+...+ +.|+|++||+++.+ ..||++++|++ ++. 
T Consensus       122 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~  200 (251)
T PRK09544        122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC  200 (251)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence            789999999999999999999999999999999888887665444344 78999999999987 56999999976 454 


Q ss_pred             cCccccc
Q psy1506          78 SGWVEEI   84 (85)
Q Consensus        78 ~g~~~~~   84 (85)
                      .|+++++
T Consensus       201 ~g~~~~~  207 (251)
T PRK09544        201 SGTPEVV  207 (251)
T ss_pred             eCCHHHH
Confidence            4666543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.4e-24  Score=142.04  Aligned_cols=83  Identities=27%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-------
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN-------   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~-------   72 (85)
                      |+||+||++|||||+.+|++++|||||+|||+.+...+++.+. .+.++.|+|++||+++.+ ..||++++|+       
T Consensus       151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~-~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~  229 (261)
T PRK14263        151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV-ELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGT  229 (261)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence            7899999999999999999999999999999998888876654 445578999999999986 5699999995       


Q ss_pred             -Cceeec-Cccccc
Q psy1506          73 -NVSKTS-GWVEEI   84 (85)
Q Consensus        73 -~g~i~~-g~~~~~   84 (85)
                       +|++.. |+++++
T Consensus       230 ~~G~i~~~g~~~~~  243 (261)
T PRK14263        230 RTGYLVEMGPTAQI  243 (261)
T ss_pred             CCceEEEeCCHHHH
Confidence             788765 776553

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.91  E-value=3.7e-24  Score=137.50  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=68.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+.+.+..||++++|++|++..
T Consensus       141 S~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~  217 (221)
T cd03244         141 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE  217 (221)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence            789999999999999999999999999999999888877654 44445689999999998887799999999998864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3.1e-24  Score=141.09  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=67.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEc--Ccee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLN--NVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~--~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... +|.|+|++||+++.+ ..||++++|+  +|++
T Consensus       130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i  209 (255)
T PRK11248        130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRV  209 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence            78999999999999999999999999999999988888766544333 488999999999987 4699999998  4877


Q ss_pred             ec
Q psy1506          77 TS   78 (85)
Q Consensus        77 ~~   78 (85)
                      ..
T Consensus       210 ~~  211 (255)
T PRK11248        210 VE  211 (255)
T ss_pred             EE
Confidence            54

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.91  E-value=2.3e-24  Score=139.98  Aligned_cols=82  Identities=26%  Similarity=0.254  Sum_probs=70.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...+ +.|++++||++..+. .||++++|++|++..
T Consensus       131 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~  210 (235)
T cd03299         131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ  210 (235)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888887655443333 889999999999865 699999999998864


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+++
T Consensus       211 ~~~~~  215 (235)
T cd03299         211 VGKPE  215 (235)
T ss_pred             ecCHH
Confidence             6544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=3.2e-24  Score=134.13  Aligned_cols=82  Identities=17%  Similarity=0.263  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~-   78 (85)
                      |+||.||++|||||+.+|+++++||||++|||+....+...+.+....|.|-++|||..+..+. +.+++.|++|++++ 
T Consensus       143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~  222 (242)
T COG4161         143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence            7999999999999999999999999999999998888876544444468999999999998864 89999999999986 


Q ss_pred             Cccc
Q psy1506          79 GWVE   82 (85)
Q Consensus        79 g~~~   82 (85)
                      |+.+
T Consensus       223 g~a~  226 (242)
T COG4161         223 GDAS  226 (242)
T ss_pred             cchh
Confidence            7654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.91  E-value=2.2e-24  Score=143.18  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=72.1

Q ss_pred             CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEE
Q psy1506           1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIV   69 (85)
Q Consensus         1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~   69 (85)
                      |+||+||++|||||+         .+|+++||||||++||+.+.+.+.+.+.+...+ +.|+|++||+++.+. .||+++
T Consensus       147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~  226 (272)
T PRK13547        147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA  226 (272)
T ss_pred             CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence            789999999999999         599999999999999999988888765544444 789999999999874 699999


Q ss_pred             EEcCceeec-Cccccc
Q psy1506          70 FLNNVSKTS-GWVEEI   84 (85)
Q Consensus        70 ~l~~g~i~~-g~~~~~   84 (85)
                      +|++|++.. |+++++
T Consensus       227 ~l~~G~i~~~g~~~~~  242 (272)
T PRK13547        227 MLADGAIVAHGAPADV  242 (272)
T ss_pred             EEECCeEEEecCHHHH
Confidence            999999874 666543

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=152.88  Aligned_cols=85  Identities=24%  Similarity=0.290  Sum_probs=78.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceee-cC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKT-SG   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~-~g   79 (85)
                      |+|||||+++||||+.+|.+++||||-++||.+....+...+.....+|.|+|+|+|+++.+..+|++++|++|.+. +|
T Consensus       474 SgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG  553 (580)
T COG4618         474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFG  553 (580)
T ss_pred             CchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcC
Confidence            79999999999999999999999999999999988888877766667899999999999999999999999999986 58


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.+|++
T Consensus       554 ~r~eVL  559 (580)
T COG4618         554 PREEVL  559 (580)
T ss_pred             CHHHHH
Confidence            888763

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.1e-24  Score=140.23  Aligned_cols=82  Identities=20%  Similarity=0.240  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+...+.+.+ ..+.++.|+|++||+++.+. .++++++|++|++.. 
T Consensus       148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~  226 (250)
T PRK14266        148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLI-HKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES  226 (250)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence            789999999999999999999999999999999888877654 44455789999999998864 589999999998865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       227 g~~~~  231 (250)
T PRK14266        227 GLTDQ  231 (250)
T ss_pred             CCHHH
Confidence            76654

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.91  E-value=2.5e-24  Score=139.06  Aligned_cols=82  Identities=20%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEc--Cceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLN--NVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~--~g~i~   77 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+..... .+.|+|++||+.+.+..||++++|+  .|++.
T Consensus       139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~  218 (225)
T PRK10247        139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ  218 (225)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHh
Confidence            78999999999999999999999999999999988877765544333 3789999999999887799999996  35655


Q ss_pred             cCccc
Q psy1506          78 SGWVE   82 (85)
Q Consensus        78 ~g~~~   82 (85)
                      +|..+
T Consensus       219 ~~~~~  223 (225)
T PRK10247        219 EARYE  223 (225)
T ss_pred             hhhhc
Confidence            56544

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.8e-24  Score=141.29  Aligned_cols=83  Identities=22%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc-----Cc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN-----NV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~-----~g   74 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+. .+.++.|+|++||+++.+ ..||++++|+     +|
T Consensus       152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G  230 (259)
T PRK14260        152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH-SLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIG  230 (259)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCc
Confidence            7899999999999999999999999999999998888776544 444568999999999987 4699999997     48


Q ss_pred             eeec-Cccccc
Q psy1506          75 SKTS-GWVEEI   84 (85)
Q Consensus        75 ~i~~-g~~~~~   84 (85)
                      ++.. |+++++
T Consensus       231 ~i~~~~~~~~~  241 (259)
T PRK14260        231 QMVEFGVTTQI  241 (259)
T ss_pred             eEEEeCCHHHH
Confidence            8765 776653

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.91  E-value=5e-24  Score=134.08  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             CCCchhHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~--p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i   76 (85)
                      |+||+||+++|||++.+  |++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+..+|++++|++|..
T Consensus        89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~  166 (176)
T cd03238          89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG  166 (176)
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence            68999999999999999  99999999999999998888876654444468999999999988877999999988654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.91  E-value=4.9e-24  Score=137.45  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=66.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+.+. .+.++.|+|++||+++.+..||++++|++|++
T Consensus       152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY-DWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            7899999999999999999999999999999998888876544 44456899999999998867999999998863

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=3.4e-24  Score=152.34  Aligned_cols=84  Identities=21%  Similarity=0.234  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+++.+.....+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       145 SGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~  224 (549)
T PRK13545        145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY  224 (549)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999888887665443345889999999999874 599999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       225 G~~~el  230 (549)
T PRK13545        225 GDIKEV  230 (549)
T ss_pred             CCHHHH
Confidence            776553

>PTZ00243 ABC transporter; Provisional

Probab=99.91  E-value=2.6e-24  Score=166.60  Aligned_cols=83  Identities=17%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~-p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+|||||++|||||+++ |+|+|||||||+||+++.+.+.+. +....+++|+|+|+|+++.+..||+|++|++|++.+ 
T Consensus      1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243       1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999995 899999999999999987777554 555567899999999999999999999999999986 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus      1526 Gt~~eL 1531 (1560)
T PTZ00243       1526 GSPREL 1531 (1560)
T ss_pred             CCHHHH
Confidence            988876

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.8e-24  Score=150.69  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+ ..||++++|++|++..
T Consensus       142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~  220 (501)
T PRK11288        142 SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA  220 (501)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            79999999999999999999999999999999998888876554444688999999999987 4699999999998763

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.1e-24  Score=140.23  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~  233 (257)
T PRK14246        155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW  233 (257)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999888777654 4444568999999999987 5699999999999864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       234 g~~~~~  239 (257)
T PRK14246        234 GSSNEI  239 (257)
T ss_pred             CCHHHH
Confidence            766543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.4e-24  Score=141.95  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=68.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE-EEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIV-FLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~-~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+.++.|+|++||+++.+. .+|+++ +|++|++..
T Consensus       182 SgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L-~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~  260 (285)
T PRK14254        182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLI-EELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE  260 (285)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence            789999999999999999999999999999999888887654 44444579999999999875 589975 579998864


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       261 ~g~~~~  266 (285)
T PRK14254        261 FDDTDK  266 (285)
T ss_pred             eCCHHH
Confidence             66544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.90  E-value=3.5e-24  Score=165.42  Aligned_cols=84  Identities=19%  Similarity=0.273  Sum_probs=75.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+|++||||||+||+++.+.+.+. +....+++|+|+|+|+++.+..+|+|++|++|++.+ |
T Consensus      1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271      1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence            78999999999999999999999999999999987777655 455567899999999999998999999999999986 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +|++++
T Consensus      1434 ~p~~Ll 1439 (1490)
T TIGR01271      1434 SIQKLL 1439 (1490)
T ss_pred             CHHHHH
Confidence            887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.90  E-value=1e-23  Score=131.09  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      |+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+. ..  +.|+|++||+.+....||++++|+++
T Consensus        93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~~~d~i~~l~~~  163 (166)
T cd03223          93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWKFHDRVLDLDGE  163 (166)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence            7899999999999999999999999999999998888776543 33  58999999998876779999999875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.9e-24  Score=139.80  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+...+.+.+.+. .+.++.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~-~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~  241 (265)
T PRK14252        163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS-DLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF  241 (265)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            7899999999999999999999999999999998888876554 444568999999999987 4699999999999864 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |+.++
T Consensus       242 g~~~~  246 (265)
T PRK14252        242 GATDT  246 (265)
T ss_pred             CCHHH
Confidence            66544

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.90  E-value=9.6e-24  Score=135.80  Aligned_cols=76  Identities=22%  Similarity=0.275  Sum_probs=66.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i   76 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.++..+..... .+.|+|++||+++....||++++|++|++
T Consensus       143 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       143 SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            78999999999999999999999999999999988888766544433 47999999999987677999999999875

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.90  E-value=8.9e-24  Score=138.56  Aligned_cols=75  Identities=21%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+.+... .+.|+|++||+++.+. .||++++|+++.
T Consensus       117 SgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~  193 (246)
T cd03237         117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP  193 (246)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence            78999999999999999999999999999999988888766544433 3789999999999875 599999997653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.90  E-value=1.2e-23  Score=133.35  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      |+|++||++||||++++|+++|.||||.+|||..+.+++..+.+....|.||++.|||.+.+.. ..+++.+++|++..
T Consensus       139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~  217 (223)
T COG2884         139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR  217 (223)
T ss_pred             CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence            7999999999999999999999999999999999999997765555579999999999998865 68999999999864

>PLN03211 ABC transporter G-25; Provisional

Probab=99.90  E-value=9.3e-24  Score=153.52  Aligned_cols=84  Identities=20%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||+|+.+|++++|||||+|||+.++..+.+.+.+...+|+|+|+++|+++. + ..+|++++|++|++.+
T Consensus       208 SgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~  287 (659)
T PLN03211        208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF  287 (659)
T ss_pred             ChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence            7999999999999999999999999999999999998887655444468999999999974 4 6699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       288 ~G~~~~~  294 (659)
T PLN03211        288 FGKGSDA  294 (659)
T ss_pred             ECCHHHH
Confidence             877654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.90  E-value=1.3e-23  Score=133.78  Aligned_cols=75  Identities=63%  Similarity=0.940  Sum_probs=65.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~g~   75 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.+++.++... .++.|+|++||+++.+..+|++++|++|+
T Consensus       129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            7899999999999999999999999999999998888876555443 45789999999998876699999999874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.90  E-value=1.4e-23  Score=134.78  Aligned_cols=75  Identities=37%  Similarity=0.627  Sum_probs=65.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH-HHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFED-CISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~-~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~   75 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+++. ++.... .+.|+|++||+.+.+..||++++|++|.
T Consensus       142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            78999999999999999999999999999999988877762 444443 4789999999998877799999998873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.90  E-value=1.9e-23  Score=131.53  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=65.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhh-hCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLN-HVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~-~~d~v~~l~~g~i   76 (85)
                      |+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...++ .|++++||+++.+. .||++++|+++..
T Consensus        73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~  150 (177)
T cd03222          73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence            7899999999999999999999999999999998888876654444454 89999999999876 5999999997643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.90  E-value=7.8e-24  Score=146.28  Aligned_cols=84  Identities=17%  Similarity=0.270  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      ||||||||.||+||+++|+++|.||||++||.....++++.+..... -|.+++++|||+..+.. +|+|.+|.+|++++
T Consensus       159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE  238 (534)
T COG4172         159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE  238 (534)
T ss_pred             CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence            79999999999999999999999999999999988888876544433 38899999999999864 89999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |..+++
T Consensus       239 ~~~t~~l  245 (534)
T COG4172         239 TGTTETL  245 (534)
T ss_pred             cCcHHHH
Confidence             776654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.3e-23  Score=141.14  Aligned_cols=82  Identities=21%  Similarity=0.254  Sum_probs=69.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeE-EEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQI-VFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v-~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.....+.+.+ ..+.++.|+|++||+++.+. .||++ ++|++|++..
T Consensus       202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L-~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~  280 (305)
T PRK14264        202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLI-EELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE  280 (305)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE
Confidence            789999999999999999999999999999999888877654 44444589999999999874 69996 5779999874


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       281 ~g~~~~  286 (305)
T PRK14264        281 YDDTDK  286 (305)
T ss_pred             eCCHHH
Confidence             66554

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.90  E-value=1.5e-23  Score=133.44  Aligned_cols=71  Identities=21%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+.+...++.|+|++||+++....||++++|
T Consensus       136 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       136 SGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence            78999999999999999999999999999999988888766544334588999999999877779998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.90  E-value=2.4e-23  Score=127.04  Aligned_cols=72  Identities=24%  Similarity=0.337  Sum_probs=63.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++||||++.+|++++||||+++||+.+...+.+.+ +.+  +.|++++||+.+.+. .||++++|++|+
T Consensus        72 S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~--~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL-KEY--PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            789999999999999999999999999999999888776654 333  469999999999874 589999999874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.90  E-value=1.3e-23  Score=162.29  Aligned_cols=84  Identities=37%  Similarity=0.608  Sum_probs=74.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++.+|+++|||||+++||+.+.+.+++.++....+++|+|++||+++.+..||++++|++|++.. |
T Consensus       550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g  629 (1490)
T TIGR01271       550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYG  629 (1490)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEc
Confidence            789999999999999999999999999999999999998766555556899999999999888899999999998864 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       630 ~~~~l  634 (1490)
T TIGR01271       630 TFSEL  634 (1490)
T ss_pred             CHHHH
Confidence            66543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.90  E-value=1.2e-23  Score=162.30  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=65.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      |+|||||++|||||+++|++|||||||++||+.+.+.+.+.+.+... +|+|+|++||+++.+..||++++|++|
T Consensus       581 SGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        581 SGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence            78999999999999999999999999999999988887765443333 489999999999988889999999986

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=1.2e-23  Score=162.80  Aligned_cols=84  Identities=51%  Similarity=0.763  Sum_probs=74.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhh--hcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG--FLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~--~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+++.+...  ..+++|+|++||+++.+..+|++++|++|++..
T Consensus       762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~  841 (1522)
T TIGR00957       762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE  841 (1522)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence            799999999999999999999999999999999999998877642  346789999999999988899999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       842 ~g~~~~l  848 (1522)
T TIGR00957       842 MGSYQEL  848 (1522)
T ss_pred             eCCHHHH
Confidence             776554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.89  E-value=3.1e-23  Score=149.80  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=74.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||+|+.+|++++|||||+|||+.++..+++.+.+...+|+|+|+++|++. . ...+|++++|++|++.+
T Consensus       168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~  247 (617)
T TIGR00955       168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY  247 (617)
T ss_pred             CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence            799999999999999999999999999999999999998876555456899999999986 4 46799999999999876


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       248 ~G~~~~~  254 (617)
T TIGR00955       248 LGSPDQA  254 (617)
T ss_pred             ECCHHHH
Confidence             887654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=5.6e-23  Score=136.01  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=70.4

Q ss_pred             CCCchhHHHHHHHHhcC---CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~---p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+||+.|||+|+.+   |++++|||||++||+...+.+.+.+.+...+|.|+|+++|+++++..+|+++.|      
T Consensus       171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~  250 (261)
T cd03271         171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGD  250 (261)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCC
Confidence            78999999999999996   799999999999999998888776544444688999999999988889999999      


Q ss_pred             cCceeec-Ccc
Q psy1506          72 NNVSKTS-GWV   81 (85)
Q Consensus        72 ~~g~i~~-g~~   81 (85)
                      ++|++.+ |++
T Consensus       251 ~~G~iv~~Gt~  261 (261)
T cd03271         251 GGGQVVASGTP  261 (261)
T ss_pred             CCCEEEEeCCC
Confidence            7888865 653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2.8e-23  Score=147.62  Aligned_cols=80  Identities=25%  Similarity=0.361  Sum_probs=69.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+.+ .  ..+.|||++||+++.+. .||++++|++|++. +
T Consensus       157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~--~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~  233 (530)
T PRK15064        157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVL-N--ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVY  233 (530)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence            799999999999999999999999999999999888776554 3  24789999999999874 69999999999883 3


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       234 ~g~~~~  239 (530)
T PRK15064        234 PGNYDE  239 (530)
T ss_pred             cCCHHH
Confidence             76654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.89  E-value=7.8e-23  Score=130.48  Aligned_cols=78  Identities=12%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEe-cCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVT-HQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vt-H~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+++.+++.+.+...+ +.++++++ |+.+.+ ..||++++|++|++.
T Consensus       120 S~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~  199 (202)
T cd03233         120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI  199 (202)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence            789999999999999999999999999999999888887765544344 56666655 455665 569999999999876


Q ss_pred             c
Q psy1506          78 S   78 (85)
Q Consensus        78 ~   78 (85)
                      .
T Consensus       200 ~  200 (202)
T cd03233         200 Y  200 (202)
T ss_pred             e
Confidence            4

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.89  E-value=3.8e-23  Score=132.93  Aligned_cols=81  Identities=14%  Similarity=0.084  Sum_probs=68.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++||||++.+|++++||||++++|+.+.+.+.+.+.+.. ++.++|++||++..+. .||++++|++|++.+ 
T Consensus       106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~  184 (213)
T PRK15177        106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMC  184 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEe
Confidence            7899999999999999999999999999999998887776544433 3468999999999874 699999999999875 


Q ss_pred             Cccc
Q psy1506          79 GWVE   82 (85)
Q Consensus        79 g~~~   82 (85)
                      ++.+
T Consensus       185 ~~~~  188 (213)
T PRK15177        185 EDLA  188 (213)
T ss_pred             CCHH
Confidence            5543

>PTZ00243 ABC transporter; Provisional

Probab=99.89  E-value=2.7e-23  Score=161.04  Aligned_cols=84  Identities=40%  Similarity=0.625  Sum_probs=74.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++.+|+++||||||++||+.+.+.+++.++....+|+|+|++||+++.+..+|++++|++|++.. |
T Consensus       784 SGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G  863 (1560)
T PTZ00243        784 SGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSG  863 (1560)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEec
Confidence            789999999999999999999999999999999888888765543446899999999999988899999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       864 ~~~~l  868 (1560)
T PTZ00243        864 SSADF  868 (1560)
T ss_pred             CHHHH
Confidence            76654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.89  E-value=3.5e-23  Score=146.80  Aligned_cols=70  Identities=27%  Similarity=0.405  Sum_probs=63.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+|||||+++|||++++|++++|||||++||+++.+.+++.+ ....+++|+|++||+++.+..+|++++|
T Consensus       460 SgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEAL-RALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            799999999999999999999999999999999999887665 4455789999999999988889999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.89  E-value=4.5e-23  Score=162.02  Aligned_cols=84  Identities=14%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+|||||+++|+||+.+|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++++. .|||+++|++|++.. 
T Consensus      2072 SGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257      2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            799999999999999999999999999999999988888765544456899999999999875 699999999999865 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus      2152 Gs~q~L 2157 (2272)
T TIGR01257      2152 GTIQHL 2157 (2272)
T ss_pred             CCHHHH
Confidence            877653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.89  E-value=4.6e-23  Score=145.26  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhh-h-CCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLN-H-VDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~   77 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.+.+.+.+.+.+...++ .|+|++||+++.+. . +|++++|++|++.
T Consensus       403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~  482 (490)
T PRK10938        403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY  482 (490)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence            7899999999999999999999999999999999888887654444454 47999999999874 3 7999999999875


Q ss_pred             c
Q psy1506          78 S   78 (85)
Q Consensus        78 ~   78 (85)
                      .
T Consensus       483 ~  483 (490)
T PRK10938        483 R  483 (490)
T ss_pred             E
Confidence            4

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.4e-23  Score=146.17  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+ ..+  +.|+|++||+.+++. .||++++|++|++. .
T Consensus       440 SgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~  516 (530)
T PRK15064        440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMAL-EKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDF  516 (530)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-HHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEc
Confidence            799999999999999999999999999999999888887654 333  359999999999875 59999999999875 3


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       517 ~g~~~~~  523 (530)
T PRK15064        517 SGTYEEY  523 (530)
T ss_pred             CCCHHHH
Confidence             766553

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.88  E-value=1.4e-22  Score=124.53  Aligned_cols=75  Identities=25%  Similarity=0.306  Sum_probs=65.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~   75 (85)
                      |+||+||+++||+++.+|++++|||||++||+.+...+.+.+.....++.|++++||+.+.+.. ||+++++++|+
T Consensus        82 S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267          82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            7899999999999999999999999999999998888776554433446899999999999765 79999998864

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=1.4e-22  Score=130.14  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~   73 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.+.+.+.+...++.|+|++||+.+.+ ..|+++++++.
T Consensus       139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            78999999999999999999999999999999988877765444445678999999999987 56899998863

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=129.94  Aligned_cols=85  Identities=19%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-hhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-LNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~~-   78 (85)
                      |+|+|.|+.|||||+.+|++++|||||+|+||-....+.+.+.....+|..|+++-|+..+ +..|||.+++..|++.. 
T Consensus       141 SGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~  220 (243)
T COG1137         141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE  220 (243)
T ss_pred             ccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence            7999999999999999999999999999999998888865544444578999999999866 68899999999999875 


Q ss_pred             CcccccC
Q psy1506          79 GWVEEIL   85 (85)
Q Consensus        79 g~~~~~~   85 (85)
                      |+|++++
T Consensus       221 G~p~ei~  227 (243)
T COG1137         221 GSPEEIV  227 (243)
T ss_pred             CCHHHHh
Confidence            9998763

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=1.3e-22  Score=132.15  Aligned_cols=84  Identities=23%  Similarity=0.229  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceee-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKT-   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~-   77 (85)
                      +.||+.|+.|||||+.+|++++||||.+|+.+....++.+.+.+... .|.|+++|.||++.+ ..|||+++|+.|++. 
T Consensus       151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA  230 (250)
T COG0411         151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA  230 (250)
T ss_pred             ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence            57999999999999999999999999999999999988876544444 368999999999985 679999999999865 


Q ss_pred             cCccccc
Q psy1506          78 SGWVEEI   84 (85)
Q Consensus        78 ~g~~~~~   84 (85)
                      +|+|+++
T Consensus       231 eG~P~eV  237 (250)
T COG0411         231 EGTPEEV  237 (250)
T ss_pred             cCCHHHH
Confidence            5999886

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=146.56  Aligned_cols=84  Identities=19%  Similarity=0.216  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+++|++++|||||++||+.+.+.+.+.+.+...++.|++++||+.+....||++++|++|++.. |
T Consensus       146 S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g  225 (648)
T PRK10535        146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNP  225 (648)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeec
Confidence            789999999999999999999999999999999888887664433345899999999999877799999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++++.
T Consensus       226 ~~~~~  230 (648)
T PRK10535        226 PAQEK  230 (648)
T ss_pred             Ccccc
Confidence            76653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=1.7e-22  Score=128.86  Aligned_cols=71  Identities=20%  Similarity=0.126  Sum_probs=61.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC-CeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~-d~v~~l   71 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+..++..| +|++.+
T Consensus       131 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            78999999999999999999999999999999988888765544334578999999999998654 677666

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.88  E-value=1.3e-22  Score=130.61  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l   71 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...+|.|+|++||+.+.+. .||+++.+
T Consensus       151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            789999999999999999999999999999999888887665444345889999999988874 69998876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=9.6e-23  Score=141.07  Aligned_cols=84  Identities=25%  Similarity=0.393  Sum_probs=76.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|.|||+++||+++++|+|++|||.||+||.++.+.+.. .+.....|+|.+++.|+++.+..+|+|++|++|++.+ |
T Consensus       401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg  479 (497)
T COG5265         401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG  479 (497)
T ss_pred             cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence            7999999999999999999999999999999998887754 4566678999999999999999999999999999987 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ..++++
T Consensus       480 ~h~~ll  485 (497)
T COG5265         480 THEELL  485 (497)
T ss_pred             cHHHHH
Confidence            877653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.88  E-value=1.5e-22  Score=159.13  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+|||||+++||||+.+|++++|||||+|||+..++.+++.+.+ ..+|+|+|++||+++.+. .||++++|++|++.. 
T Consensus      1063 SGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~-l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257      1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            79999999999999999999999999999999998888876544 456899999999999875 699999999999865 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus      1142 Gs~~~ 1146 (2272)
T TIGR01257      1142 GTPLF 1146 (2272)
T ss_pred             cCHHH
Confidence            76654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.88  E-value=2.2e-22  Score=144.99  Aligned_cols=73  Identities=18%  Similarity=0.312  Sum_probs=64.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~   73 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+.+.+.+... .+.|+|++|||++++. .||++++|++
T Consensus       455 SGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~  529 (590)
T PRK13409        455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG  529 (590)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence            79999999999999999999999999999999988888766544434 3789999999999875 6999999976

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=1.9e-22  Score=144.21  Aligned_cols=80  Identities=20%  Similarity=0.228  Sum_probs=67.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+...+.+.+. +...  +.|+|++||+++++. .||++++|++|++. +
T Consensus       165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~  241 (556)
T PRK11819        165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPW  241 (556)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEe
Confidence            79999999999999999999999999999999988877654 4443  259999999999875 58999999999874 3


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       242 ~g~~~~  247 (556)
T PRK11819        242 EGNYSS  247 (556)
T ss_pred             cCCHHH
Confidence             65543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=146.34  Aligned_cols=80  Identities=20%  Similarity=0.367  Sum_probs=69.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||+++.+|+++||||||++||+.+...+.+.+ ..+ . .|+|+||||..++. .||++++|++|++. +
T Consensus       432 SgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L-~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~  508 (638)
T PRK10636        432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL-IDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPF  508 (638)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-HHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEc
Confidence            799999999999999999999999999999999888776654 444 3 49999999999875 59999999999885 3


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       509 ~g~~~~  514 (638)
T PRK10636        509 DGDLED  514 (638)
T ss_pred             CCCHHH
Confidence             66654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=3e-22  Score=128.02  Aligned_cols=72  Identities=19%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+.+.+.. ++++.++.
T Consensus       129 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence            7899999999999999999999999999999998888876654444568899999999998876 88887754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.87  E-value=2.2e-22  Score=145.75  Aligned_cols=80  Identities=21%  Similarity=0.272  Sum_probs=68.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+.+. +..+  +.|+|+|||+..++. .||++++|++|++. +
T Consensus       158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~-L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~  234 (635)
T PRK11147        158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGF-LKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY  234 (635)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence            79999999999999999999999999999999987777654 4433  359999999999985 58999999999885 3


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       235 ~g~~~~  240 (635)
T PRK11147        235 PGNYDQ  240 (635)
T ss_pred             cCCHHH
Confidence             66543

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=3.2e-22  Score=125.74  Aligned_cols=77  Identities=19%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~   77 (85)
                      |+|..|||+||||++..|++++.||||.+||..+.+++...++.... .|.|.|+||||+.....|+|.+.|++|++.
T Consensus       148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~  225 (228)
T COG4181         148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV  225 (228)
T ss_pred             CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence            79999999999999999999999999999999999999988777655 489999999999999999999999999875

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.87  E-value=4e-22  Score=126.99  Aligned_cols=71  Identities=18%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l   71 (85)
                      |+||+||+++|||++.+|+++||||||++||+...+.+.+.+.+...++.|+|++||+.... ..+++++.+
T Consensus       127 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         127 SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            78999999999999999999999999999999988888766544334588999999988765 568998876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.87  E-value=3e-22  Score=143.06  Aligned_cols=80  Identities=20%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+  +.|+|+|||+.+.+. .||++++|++|++. +
T Consensus       163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L-~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~  239 (552)
T TIGR03719       163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHL-QEY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPW  239 (552)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHH-HhC--CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEe
Confidence            799999999999999999999999999999999888776553 333  359999999999875 58999999999864 3


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       240 ~g~~~~  245 (552)
T TIGR03719       240 EGNYSS  245 (552)
T ss_pred             cCCHHH
Confidence             66554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.6e-22  Score=134.51  Aligned_cols=84  Identities=20%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |||.||||+|+|||+..|++++||||.++||....++++..+-+...+ +..|++|||.++++ ..+|++++|++|++..
T Consensus       130 SGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A  209 (352)
T COG4148         130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA  209 (352)
T ss_pred             CcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence            799999999999999999999999999999998888887654333333 67999999999885 6799999999999864


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |..+++
T Consensus       210 ~g~~e~v  216 (352)
T COG4148         210 SGPLEEV  216 (352)
T ss_pred             cCcHHHH
Confidence             877765

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.87  E-value=5.2e-22  Score=130.85  Aligned_cols=73  Identities=23%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~   73 (85)
                      |+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.+. .||++++|++
T Consensus       141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~  214 (255)
T cd03236         141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG  214 (255)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence            789999999999999999999999999999999888887655443345789999999999876 5999999965

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.8e-22  Score=145.37  Aligned_cols=79  Identities=24%  Similarity=0.316  Sum_probs=67.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||||+.+|++|||||||++||+.+...+.+. +..+  +.|+|+||||..++. .||++++|++|++. +
T Consensus       151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~-L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~  227 (638)
T PRK10636        151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW-LKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEY  227 (638)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence            79999999999999999999999999999999987766544 3333  469999999999985 59999999999885 2


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+++
T Consensus       228 ~g~~~  232 (638)
T PRK10636        228 TGNYS  232 (638)
T ss_pred             cCCHH
Confidence             6544

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=2.2e-22  Score=131.85  Aligned_cols=84  Identities=21%  Similarity=0.304  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |-|+.||+.+..+++++|+++|||||||||||.+.+.+-+.++....+|.|||++||.++.+. .||++++|++|+.+ +
T Consensus       132 SKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~  211 (300)
T COG4152         132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY  211 (300)
T ss_pred             hhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe
Confidence            569999999999999999999999999999999887776666666668999999999999875 69999999999765 5


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+.+++
T Consensus       212 G~v~~i  217 (300)
T COG4152         212 GTVEDI  217 (300)
T ss_pred             ccHHHH
Confidence            876543

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.3e-22  Score=128.54  Aligned_cols=85  Identities=25%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |||||||..+|+.++.+.++++||||.++||.+.+..+++.+.+...+ |+|+++|-||..+.+ ++|+|+-|++|+++.
T Consensus       137 SGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~  216 (252)
T COG4604         137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK  216 (252)
T ss_pred             ccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence            799999999999999999999999999999999999998876555544 899999999999985 699999999999985


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |++++++
T Consensus       217 ~G~~~eii  224 (252)
T COG4604         217 QGSPDEII  224 (252)
T ss_pred             cCCHHHhc
Confidence             9998863

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.87  E-value=3.1e-22  Score=126.28  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY   61 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~   61 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+++.
T Consensus       129 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            7899999999999999999999999999999998888877654444458899999999764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=1e-21  Score=127.22  Aligned_cols=84  Identities=19%  Similarity=0.226  Sum_probs=74.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+|-+++||||+.+|++++||||+.||-|...+++++.+.+...+ +.||++|.++..+. ..+||.++|++|+++.
T Consensus       138 SGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~  217 (237)
T COG0410         138 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL  217 (237)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE
Confidence            799999999999999999999999999999999999999776555444 67999999999875 6799999999999985


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+.+++
T Consensus       218 ~G~~~eL  224 (237)
T COG0410         218 SGTAAEL  224 (237)
T ss_pred             ecCHHHH
Confidence             887765

>PLN03073 ABC transporter F family; Provisional

Probab=99.86  E-value=7e-22  Score=144.83  Aligned_cols=80  Identities=21%  Similarity=0.353  Sum_probs=68.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++||||++.+|+++||||||++||+.+.+.+.+.+. .+ + .|+|++||+..++. .||++++|++|++. +
T Consensus       629 SgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~-~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~  705 (718)
T PLN03073        629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV-LF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPF  705 (718)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH-Hc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            7999999999999999999999999999999998887765543 22 3 49999999999875 59999999999886 3


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |++++
T Consensus       706 ~g~~~~  711 (718)
T PLN03073        706 HGTFHD  711 (718)
T ss_pred             CCCHHH
Confidence             65543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.86  E-value=1.5e-21  Score=150.30  Aligned_cols=82  Identities=13%  Similarity=0.113  Sum_probs=71.3

Q ss_pred             CCCchhHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcCc-ee
Q psy1506           1 MTGKSSCQLCFEAVYKNAD-IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNNV-SK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~-illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~g-~i   76 (85)
                      |+|||||++||++|+.+|+ +++|||||+|||+.++..+.+.+.+...+|+|+|+++|+++. + ..+|++++|++| ++
T Consensus       903 SgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i  982 (1394)
T TIGR00956       903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT  982 (1394)
T ss_pred             CHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence            7899999999999999997 999999999999999988887665554578999999999986 3 569999999987 87


Q ss_pred             ec-Cccc
Q psy1506          77 TS-GWVE   82 (85)
Q Consensus        77 ~~-g~~~   82 (85)
                      .+ |++.
T Consensus       983 v~~G~~~  989 (1394)
T TIGR00956       983 VYFGDLG  989 (1394)
T ss_pred             EEECCcc
Confidence            65 7753

>PLN03140 ABC transporter G family member; Provisional

Probab=99.86  E-value=1.6e-21  Score=150.67  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--hhhCCeEEEEcC-ceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--LNHVDQIVFLNN-VSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~~~~d~v~~l~~-g~i~   77 (85)
                      |+|||||++||++|+.+|++++|||||+|||+.++..+++.+.+...+|+|+|+++|+++.  ...+|++++|++ |++.
T Consensus      1021 SgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140       1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence            7899999999999999999999999999999999998887765555568999999999974  367999999996 7876


Q ss_pred             c-Ccc
Q psy1506          78 S-GWV   81 (85)
Q Consensus        78 ~-g~~   81 (85)
                      + |++
T Consensus      1101 ~~G~~ 1105 (1470)
T PLN03140       1101 YSGPL 1105 (1470)
T ss_pred             EECCc
Confidence            4 765

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.86  E-value=1.4e-21  Score=142.19  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=62.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||++||||++++|++++|||||++||+.+.+.+.+.+ +.  .+.|+|++||+++.+..+|++++|++
T Consensus       584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~--~~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE--FGITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence            799999999999999999999999999999999888776543 32  37899999999998888999999974

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=1.1e-21  Score=124.84  Aligned_cols=68  Identities=24%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI   68 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v   68 (85)
                      |+||+||++||||++.+|++++|||||++||+.+.+.+.+.+.+...++.|+|++||+...+..+|.-
T Consensus       129 S~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~  196 (200)
T PRK13540        129 SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYE  196 (200)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchh
Confidence            78999999999999999999999999999999988888766554334688999999999888777643

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=1.5e-21  Score=123.79  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI   68 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v   68 (85)
                      |+||+||+++|||++.+|++++|||||++||+.+.+.+.+.+.....++.|+|++||+.+.+..+|.+
T Consensus       125 S~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~  192 (195)
T PRK13541        125 SSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL  192 (195)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence            78999999999999999999999999999999988877765433334678999999999988777654

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.86  E-value=1.3e-21  Score=146.20  Aligned_cols=84  Identities=21%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+||+.||++|..+|  ++++|||||++||+.....+++.+.+...+|.|||+|+|+++.+..||++++|      +
T Consensus       491 SgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~  570 (943)
T PRK00349        491 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVH  570 (943)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCC
Confidence            789999999999999997  99999999999999999988876555445689999999999988789999999      8


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.. |+++++
T Consensus       571 ~G~iv~~g~~~e~  583 (943)
T PRK00349        571 GGEVVASGTPEEI  583 (943)
T ss_pred             CCEEeeccCHHHH
Confidence            888875 776654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.86  E-value=1.5e-21  Score=145.77  Aligned_cols=84  Identities=18%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+||+.||++|..+|  ++|||||||+|||+.....+++.+.+...+|.|||+|+|+++.+..||++++|      +
T Consensus       489 SGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~  568 (924)
T TIGR00630       489 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIH  568 (924)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCC
Confidence            789999999999999986  89999999999999999988876655545689999999999988889999999      8


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.. |+++++
T Consensus       569 ~G~Iv~~g~~~el  581 (924)
T TIGR00630       569 GGEVVASGTPEEI  581 (924)
T ss_pred             CCEEeeccCHHHH
Confidence            888875 776554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.85  E-value=3.2e-21  Score=125.91  Aligned_cols=78  Identities=17%  Similarity=0.263  Sum_probs=67.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYLN-HVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~   77 (85)
                      |.||+||+.|||||+.+|+++|||||++|||..+++.+.+.+......  +.++++|||..+++. ..++++.+++|++.
T Consensus       173 S~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~  252 (257)
T COG1119         173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV  252 (257)
T ss_pred             CHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence            789999999999999999999999999999999887887665444433  579999999998875 56999999999886


Q ss_pred             c
Q psy1506          78 S   78 (85)
Q Consensus        78 ~   78 (85)
                      .
T Consensus       253 ~  253 (257)
T COG1119         253 A  253 (257)
T ss_pred             e
Confidence            5

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.85  E-value=1.1e-21  Score=139.19  Aligned_cols=58  Identities=31%  Similarity=0.417  Sum_probs=52.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL   59 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~   59 (85)
                      |+|||||++||||++++|++++||||||+||+++.+.+.+.+ ....+++|+|+|||++
T Consensus       472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL  529 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence            789999999999999999999999999999999988887665 4456789999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.85  E-value=2.9e-21  Score=136.26  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=70.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |.||+|-|+||||+..+++++|||||||+|+....+.+++.+.+...+|.++|+|||+++++ ..||++.+|++|+.+.
T Consensus       147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~  225 (500)
T COG1129         147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG  225 (500)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence            56999999999999999999999999999999999999877655566899999999999886 6799999999998764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.85  E-value=2.1e-21  Score=138.76  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=66.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC-ceee-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN-VSKT-   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~-g~i~-   77 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+.+.+ ..+ .+ ++|++||+++++. .||++++|++ |++. 
T Consensus       445 SgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~-~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~  521 (552)
T TIGR03719       445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL-LEF-AG-CAVVISHDRWFLDRIATHILAFEGDSHVEW  521 (552)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHC-CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence            799999999999999999999999999999999888887654 443 23 8999999999875 5999999986 5654 


Q ss_pred             c-Cccc
Q psy1506          78 S-GWVE   82 (85)
Q Consensus        78 ~-g~~~   82 (85)
                      + |+.+
T Consensus       522 ~~g~~~  527 (552)
T TIGR03719       522 FEGNYS  527 (552)
T ss_pred             eCCCHH
Confidence            3 5543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.85  E-value=1.8e-21  Score=139.20  Aligned_cols=80  Identities=18%  Similarity=0.306  Sum_probs=66.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC-ceee-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN-VSKT-   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~-g~i~-   77 (85)
                      |+||+||++||||++.+|+++||||||++||+.+...+.+.+ ... .+ ++|++||+++++. .||++++|++ |++. 
T Consensus       447 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~-~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~  523 (556)
T PRK11819        447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL-LEF-PG-CAVVISHDRWFLDRIATHILAFEGDSQVEW  523 (556)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-HhC-CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEE
Confidence            799999999999999999999999999999999888887654 433 34 8999999999874 6999999986 6664 


Q ss_pred             -cCcccc
Q psy1506          78 -SGWVEE   83 (85)
Q Consensus        78 -~g~~~~   83 (85)
                       .|+.++
T Consensus       524 ~~g~~~~  530 (556)
T PRK11819        524 FEGNFQE  530 (556)
T ss_pred             ecCCHHH
Confidence             365543

>PRK13409 putative ATPase RIL; Provisional

Probab=99.85  E-value=2.7e-21  Score=139.39  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=64.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g   74 (85)
                      |+||+||++||+||+.+|++++|||||++||+..+..+.+.+.+... +.|+|++||+++.+. .+|++++|+++
T Consensus       214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            78999999999999999999999999999999988888776544444 889999999999875 58999999763

>PLN03073 ABC transporter F family; Provisional

Probab=99.85  E-value=2.4e-21  Score=142.02  Aligned_cols=79  Identities=27%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~-~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.....+.+.+ ..+  +.|+|+|||+..++. .||++++|++|++. +
T Consensus       346 SgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L-~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~  422 (718)
T PLN03073        346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL-LKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTY  422 (718)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            799999999999999999999999999999999887776543 333  679999999999885 59999999999885 3


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+++
T Consensus       423 ~g~~~  427 (718)
T PLN03073        423 KGDYD  427 (718)
T ss_pred             CCCHH
Confidence             5543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.85  E-value=2.5e-21  Score=149.19  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=72.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcc-hh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQ-YL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~g~i~   77 (85)
                      |+|||||++||++|+.+|++++|||||+|||+.++..+.+.+.+... .|+|+|+++|++. .+ ..+|++++|++|++.
T Consensus       211 SGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv  290 (1394)
T TIGR00956       211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI  290 (1394)
T ss_pred             CcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence            79999999999999999999999999999999999999876655444 3889999999974 44 569999999999887


Q ss_pred             c-Cccccc
Q psy1506          78 S-GWVEEI   84 (85)
Q Consensus        78 ~-g~~~~~   84 (85)
                      + |+++++
T Consensus       291 ~~G~~~~~  298 (1394)
T TIGR00956       291 YFGPADKA  298 (1394)
T ss_pred             EECCHHHH
Confidence            5 777653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.85  E-value=2.3e-21  Score=140.42  Aligned_cols=80  Identities=21%  Similarity=0.328  Sum_probs=66.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEc-Cceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLN-NVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~-~g~i~~   78 (85)
                      |+||+||++||||++.+|++|||||||++||+.+...+.+. +..+  +.|+|+||||..++. .||++++++ +|++..
T Consensus       442 SgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~  518 (635)
T PRK11147        442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEEL-LDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR  518 (635)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH-HHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence            79999999999999999999999999999999987766543 4443  459999999999875 699999997 788752


Q ss_pred             --Ccccc
Q psy1506          79 --GWVEE   83 (85)
Q Consensus        79 --g~~~~   83 (85)
                        |+.++
T Consensus       519 ~~g~y~~  525 (635)
T PRK11147        519 YVGGYHD  525 (635)
T ss_pred             ccCCHHH
Confidence              65543

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=4.7e-21  Score=123.54  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~   73 (85)
                      |+|.+|||.+||.|+      .++++++||||||+||.......++...+...+|..|+.|-||++.. .+|||+++|.+
T Consensus       137 SGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~  216 (259)
T COG4559         137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ  216 (259)
T ss_pred             CchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence            799999999999998      34568999999999999988888876555556789999999999985 68999999999


Q ss_pred             ceeec-CcccccC
Q psy1506          74 VSKTS-GWVEEIL   85 (85)
Q Consensus        74 g~i~~-g~~~~~~   85 (85)
                      |++.. |.|++++
T Consensus       217 Grv~a~g~p~~vl  229 (259)
T COG4559         217 GRVIASGSPQDVL  229 (259)
T ss_pred             CeEeecCCHHHhc
Confidence            99875 9998864

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.85  E-value=3.6e-21  Score=122.19  Aligned_cols=68  Identities=19%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV   69 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~   69 (85)
                      |+||+||++||||++.+|++++|||||++||+...+.+.+.+.+...++.|+|++||+...+ .+++++
T Consensus       129 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~  196 (198)
T TIGR01189       129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL  196 (198)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence            78999999999999999999999999999999988877765544345688999999987543 234443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG0056|consensus

Probab=99.85  E-value=1.9e-21  Score=137.41  Aligned_cols=84  Identities=25%  Similarity=0.381  Sum_probs=75.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||.||||++||+++++|.+++|||.||+||..+.+.+. ..+.....++|.|+|.|+++.+-++|.|+++++|.|++ |
T Consensus       676 SGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQ-aaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG  754 (790)
T KOG0056|consen  676 SGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ-AALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERG  754 (790)
T ss_pred             CCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHH-HHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecC
Confidence            799999999999999999999999999999999877764 55666678899999999999999999999999999987 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ..+|++
T Consensus       755 ~HeeLl  760 (790)
T KOG0056|consen  755 RHEELL  760 (790)
T ss_pred             cHHHHH
Confidence            888763

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=3.2e-21  Score=123.37  Aligned_cols=77  Identities=19%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcC--cee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNN--VSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~--g~i   76 (85)
                      |+||+||+.+||||..+|++++||||+++||.-+++.+...++..|. .|+.+++|||+.++. -.+++.++|..  |++
T Consensus       134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv  213 (259)
T COG4525         134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV  213 (259)
T ss_pred             cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence            79999999999999999999999999999999998888777777776 489999999999885 46899999985  455


Q ss_pred             e
Q psy1506          77 T   77 (85)
Q Consensus        77 ~   77 (85)
                      +
T Consensus       214 v  214 (259)
T COG4525         214 V  214 (259)
T ss_pred             e
Confidence            4

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.84  E-value=1.3e-20  Score=121.06  Aligned_cols=75  Identities=7%  Similarity=0.010  Sum_probs=63.3

Q ss_pred             CCCchhHHHHHHHHhc----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE
Q psy1506           1 MTGKSSCQLCFEAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIV   69 (85)
Q Consensus         1 ~~g~~~~~~laral~~----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~   69 (85)
                      |+||+||+++|||++.          +|++++|||||++||+.....+.+.+.+...++.|+|++||+++.+. .+++++
T Consensus       125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~  204 (213)
T cd03279         125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLE  204 (213)
T ss_pred             CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEE
Confidence            6899999999999984          67899999999999999888876654433334889999999998875 589999


Q ss_pred             EEcCce
Q psy1506          70 FLNNVS   75 (85)
Q Consensus        70 ~l~~g~   75 (85)
                      ++++|.
T Consensus       205 ~~~~~~  210 (213)
T cd03279         205 VIKTPG  210 (213)
T ss_pred             EEecCC
Confidence            999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=1.2e-20  Score=141.23  Aligned_cols=84  Identities=21%  Similarity=0.294  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+||+.||++|+.+|   +++||||||+|||+.....+++.+.+...+|.|+|+++|+++.+..+|+++.|      
T Consensus       832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~  911 (943)
T PRK00349        832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGD  911 (943)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCC
Confidence            789999999999999999   99999999999999988888876544444688999999999988889999999      


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|++.. |+++++
T Consensus       912 ~~G~Iv~~Gt~~el  925 (943)
T PRK00349        912 GGGEIVATGTPEEV  925 (943)
T ss_pred             CCCEEEEeCCHHHH
Confidence            6888875 877664

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.83  E-value=2.7e-20  Score=139.08  Aligned_cols=84  Identities=21%  Similarity=0.292  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhc---CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYK---NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~---~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+||+.||++|+.   +|++++|||||+|||+...+.+.+.+.+...+|.|+|+++|+++.+..+|+++.|      
T Consensus       830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~  909 (924)
T TIGR00630       830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGD  909 (924)
T ss_pred             CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccC
Confidence            7899999999999997   5999999999999999998888876544445689999999999988789999999      


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|++.. |+++++
T Consensus       910 ~gG~iv~~G~~~~l  923 (924)
T TIGR00630       910 GGGTIVASGTPEEV  923 (924)
T ss_pred             CCCEEEEeCCHHHh
Confidence            6888875 888775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03140 ABC transporter G family member; Provisional

Probab=99.83  E-value=1.1e-20  Score=146.04  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=72.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcc-h-hhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQ-Y-LNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~-~-~~~~d~v~~l~~g~i~   77 (85)
                      |+|||||+++|++++.+|++++|||||+|||+.++..+.+.+.+... .|.|+|+++|++. . ...+|++++|++|++.
T Consensus       338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv  417 (1470)
T PLN03140        338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV  417 (1470)
T ss_pred             CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence            79999999999999999999999999999999999999876555444 4789999999974 4 4679999999999987


Q ss_pred             c-Cccccc
Q psy1506          78 S-GWVEEI   84 (85)
Q Consensus        78 ~-g~~~~~   84 (85)
                      + |+++++
T Consensus       418 y~G~~~~~  425 (1470)
T PLN03140        418 YQGPRDHI  425 (1470)
T ss_pred             EeCCHHHH
Confidence            5 876654

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=3.2e-20  Score=117.38  Aligned_cols=84  Identities=14%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      |+||+||+.|||-|+..|+++++||||.|||.....+++..+.....+ +.++++||||+..... ++|..+|++|.+++
T Consensus       153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve  232 (258)
T COG4107         153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE  232 (258)
T ss_pred             chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence            799999999999999999999999999999999888888765444444 7899999999998864 89999999998876


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |-++.+
T Consensus       233 ~GLTDrv  239 (258)
T COG4107         233 SGLTDRV  239 (258)
T ss_pred             ccccccc
Confidence             766654

>KOG0054|consensus

Probab=99.82  E-value=2.8e-20  Score=142.16  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=75.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |-||||-+++||||+++++|++|||+|+++|+++ ..+.+..++...+++||+.|.|+++.+-.+|||++|++|++.+ +
T Consensus      1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~T-D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPET-DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred             ChHHHHHHHHHHHHhccCCEEEEecccccCChHH-HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecC
Confidence            5799999999999999999999999999999985 5555677777778999999999999999999999999999986 8


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +|++++
T Consensus      1356 sP~~Ll 1361 (1381)
T KOG0054|consen 1356 SPAELL 1361 (1381)
T ss_pred             ChHHHH
Confidence            888764

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.82  E-value=5.7e-20  Score=117.24  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=61.8

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+++|++++    .+|++++|||||++||+.....+.+.+ ....++.++|++||+++.+..+|+++.+..
T Consensus       115 S~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l-~~~~~~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         115 SGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLL-KEFSKETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHH-HHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence            689999999999987    467999999999999999888887654 444457899999999988878999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=5.6e-20  Score=120.41  Aligned_cols=73  Identities=12%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             CCCchhHHHHHHHHhcC----CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~----p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||++|||+++.+    |++++|||||++||+.....+.+.+.+...+|.++|++||+.+.+..||+++++.+
T Consensus       157 S~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~  233 (247)
T cd03275         157 SGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR  233 (247)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence            68999999999999864    89999999999999998888876554443458899999999887888999999874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=5.1e-20  Score=118.99  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=68.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcch-hhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQY-LNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~-~~~~d~v~~l~~g~i~   77 (85)
                      |+||||.+++++|.++.|++++|||-|++|||++++.+++.-.+-..+ +.|.++|||+++. +.+.+|.++|++|+|+
T Consensus       150 SGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv  228 (263)
T COG1101         150 SGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV  228 (263)
T ss_pred             cchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence            799999999999999999999999999999999999998765444444 6799999999976 5789999999999986

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.82  E-value=9.3e-20  Score=116.74  Aligned_cols=73  Identities=21%  Similarity=0.190  Sum_probs=62.3

Q ss_pred             CCCchhH------HHHHHHHhcCCCEEEEecCCCCCCHHHHH-HHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSC------QLCFEAVYKNADIYLLDDPLSAVDMHVGK-HLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~------~~laral~~~p~illlDEP~~~LD~~~~~-~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+||      +++|||++.+|+++++|||+++||+.... .+.+.+.+...+ +.++|++||+++....+|+++.|+
T Consensus       117 S~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~  196 (204)
T cd03240         117 SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVE  196 (204)
T ss_pred             CccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEe
Confidence            7899996      78999999999999999999999999877 777655443334 789999999988877799999997


Q ss_pred             C
Q psy1506          73 N   73 (85)
Q Consensus        73 ~   73 (85)
                      +
T Consensus       197 ~  197 (204)
T cd03240         197 K  197 (204)
T ss_pred             e
Confidence            5

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.82  E-value=4.4e-20  Score=143.66  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc------
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN------   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~------   72 (85)
                      |+||+||+.||+||..+|  ++++|||||+|||+...+.+++.+.+...+|.|||+|+|+++.+..||++++|.      
T Consensus       478 SGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~  557 (1809)
T PRK00635        478 SGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIF  557 (1809)
T ss_pred             CHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccC
Confidence            789999999999999999  899999999999999888888765544456899999999999777899999996      


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.. |+++++
T Consensus       558 gG~Iv~~G~~~ei  570 (1809)
T PRK00635        558 GGEVLFNGSPREF  570 (1809)
T ss_pred             CCEEEEecCHHHH
Confidence            667764 665543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=5.1e-20  Score=143.30  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             CCCchhHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc-----
Q psy1506           1 MTGKSSCQLCFEAVY---KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN-----   72 (85)
Q Consensus         1 ~~g~~~~~~laral~---~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~-----   72 (85)
                      |+||+||++|||+|+   .+|+++||||||+|||+...+.+++.+.+...+|.|+|+++|+++.+..+|++++|.     
T Consensus       811 SGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~  890 (1809)
T PRK00635        811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGN  890 (1809)
T ss_pred             CHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCC
Confidence            789999999999998   699999999999999999988888765544456899999999999887799999995     


Q ss_pred             -Cceeec-Cccccc
Q psy1506          73 -NVSKTS-GWVEEI   84 (85)
Q Consensus        73 -~g~i~~-g~~~~~   84 (85)
                       +|++.. |+++++
T Consensus       891 ~~G~iv~~Gtpeel  904 (1809)
T PRK00635        891 LGGYLLASCSPEEL  904 (1809)
T ss_pred             CCCEEEEeCCHHHH
Confidence             567654 777654

>KOG0061|consensus

Probab=99.81  E-value=3.2e-20  Score=134.28  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch-h-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-L-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~g~i~~   78 (85)
                      |+|||+|+++|.-++.+|.++++||||+|||...+..+.+.+.+..++|+|||++=|++.. + ...|++++|.+|+.++
T Consensus       172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy  251 (613)
T KOG0061|consen  172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY  251 (613)
T ss_pred             ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence            7899999999999999999999999999999999999998776666679999999999965 3 6689999999998876


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |++++.
T Consensus       252 ~G~~~~~  258 (613)
T KOG0061|consen  252 SGSPREL  258 (613)
T ss_pred             ecCHHHH
Confidence             887653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.81  E-value=4e-20  Score=131.92  Aligned_cols=79  Identities=25%  Similarity=0.336  Sum_probs=66.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-~   78 (85)
                      |+|||-|++||+||..+|++|||||||++||..+...+ +..+.. .+| |+|+||||-.++.. |++|+.+++|++. +
T Consensus       155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y  231 (530)
T COG0488         155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY  231 (530)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence            79999999999999999999999999999999866655 444443 245 99999999999965 8999999999775 3


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |..+
T Consensus       232 ~Gny~  236 (530)
T COG0488         232 KGNYS  236 (530)
T ss_pred             cCCHH
Confidence             6554

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.81  E-value=1e-19  Score=115.82  Aligned_cols=85  Identities=19%  Similarity=0.296  Sum_probs=75.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~~   78 (85)
                      ++||||||++||||.-+|+++|.||..++||...+..+....+.... -|.+.|+|+.++..+++ +|+|++|++|++++
T Consensus       151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE  230 (267)
T COG4167         151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE  230 (267)
T ss_pred             CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee
Confidence            57999999999999999999999999999999988888776665544 38999999999999986 89999999999875


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |++.+++
T Consensus       231 ~G~t~~v~  238 (267)
T COG4167         231 RGSTADVL  238 (267)
T ss_pred             cCChhhhh
Confidence             9888764

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=6.3e-20  Score=117.26  Aligned_cols=83  Identities=14%  Similarity=0.287  Sum_probs=71.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      ||||||++.|++.++.+|+++++|||++|+......+.- .+++....++++++|.||+.++. .+++|-+|+.|.+.. 
T Consensus       149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E  227 (249)
T COG4674         149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE  227 (249)
T ss_pred             ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence            799999999999999999999999999999766555554 45666677889999999999985 589999999998864 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+.+++
T Consensus       228 Gsld~v  233 (249)
T COG4674         228 GSLDEV  233 (249)
T ss_pred             ccHHHh
Confidence            887654

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.81  E-value=1.8e-19  Score=117.15  Aligned_cols=71  Identities=17%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+||++||||++.    +|+++++||||++||+...+.+++.+ ..+.++.++|+++|+.+....||++++|.
T Consensus       160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~~~~ii~~~h~~~~~~~~d~i~~l~  234 (243)
T cd03272         160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSDGAQFITTTFRPELLEVADKFYGVK  234 (243)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence            6899999999999973    68999999999999999888887654 44445778888899877677899999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=1.6e-19  Score=119.86  Aligned_cols=82  Identities=16%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      |-|||-|+.||.+|+++|++++|||||-|||..++..+.+ +++.. . ++.||+++||+++.+ ..|+||+.++.|++.
T Consensus       158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~-Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv  236 (325)
T COG4586         158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE-FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV  236 (325)
T ss_pred             cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH-HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence            5699999999999999999999999999999988777765 44443 3 478999999999886 579999999999988


Q ss_pred             c-Ccccc
Q psy1506          78 S-GWVEE   83 (85)
Q Consensus        78 ~-g~~~~   83 (85)
                      + |+.++
T Consensus       237 ~dg~l~~  243 (325)
T COG4586         237 FDGTLAQ  243 (325)
T ss_pred             ecccHHH
Confidence            6 66543

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.80  E-value=2e-19  Score=114.75  Aligned_cols=74  Identities=14%  Similarity=0.044  Sum_probs=63.1

Q ss_pred             CCCchhHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC---CcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK---DKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral----~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~---~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+++|+|+    +.+|++++|||||+++|+.....+.+.+.+...+   +.+++++||+++.+...|+|.+|+.
T Consensus       111 S~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~  190 (198)
T cd03276         111 SGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRM  190 (198)
T ss_pred             ChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEe
Confidence            68999999999999    5899999999999999999888887765554332   3589999999998877799999986


Q ss_pred             c
Q psy1506          74 V   74 (85)
Q Consensus        74 g   74 (85)
                      +
T Consensus       191 ~  191 (198)
T cd03276         191 K  191 (198)
T ss_pred             c
Confidence            4

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.80  E-value=2.6e-19  Score=126.46  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      |||-.||+.|||.|..+|++|||||||.|+|..+..++++.+.+...+|.+|+++|.++.++ ..||||++|++|++.
T Consensus       403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~  480 (500)
T COG1129         403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV  480 (500)
T ss_pred             CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence            79999999999999999999999999999999999999987666667899999999999875 579999999999886

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.80  E-value=3.4e-19  Score=124.95  Aligned_cols=77  Identities=23%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      |-|++|||.|.+||+.+|++|||||||+-|-|...++++..+.+...+|+|||+|||.+.++ ..||++.+|++|+++
T Consensus       142 sVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv  219 (501)
T COG3845         142 SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV  219 (501)
T ss_pred             CcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence            45999999999999999999999999999999999999987666666899999999999886 569999999999865

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.79  E-value=5.1e-19  Score=111.41  Aligned_cols=73  Identities=15%  Similarity=0.110  Sum_probs=63.2

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+++||+++    .+|+++++|||++++|+...+.+.+.+.+...+|.++|++||+++....+|+++.+.+
T Consensus        96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~  172 (178)
T cd03239          96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence            689999999999996    6999999999999999998888876654444456899999999988878999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=6.5e-19  Score=115.49  Aligned_cols=71  Identities=18%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+||+++|||++    .+|+++++||||++||+...+.+++.+ ..+.+|.++|++||+.+....||+++-+.
T Consensus       168 S~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l-~~~~~g~~ii~iSH~~~~~~~~d~v~~~~  242 (251)
T cd03273         168 SGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI-KTHFKGSQFIVVSLKEGMFNNANVLFRTR  242 (251)
T ss_pred             CHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence            689999999999998    578999999999999999888887654 44456889999999977778899998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0059|consensus

Probab=99.78  E-value=3.2e-19  Score=133.20  Aligned_cols=84  Identities=18%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+|+|.|+++|.|++.+|++++|||||+|+||..++.++..+.+..++|+.+|++||.+++.+ .|+|+.+|.+|++.. 
T Consensus       700 SgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci  779 (885)
T KOG0059|consen  700 SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI  779 (885)
T ss_pred             CCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence            799999999999999999999999999999999888887654443445569999999999986 599999999999876 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       780 Gs~q~L  785 (885)
T KOG0059|consen  780 GSPQEL  785 (885)
T ss_pred             cChHHH
Confidence            887764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=6.7e-19  Score=110.55  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch-hhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY-LNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~-~~~~d~v~~l~~g~i   76 (85)
                      |||.+||++++|-|...|+|++||||||+||+.+.+.+-..+.+..+ ++..+++|||+.+. +.++++++.+..|++
T Consensus       135 SGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         135 SGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             cchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            79999999999999999999999999999999988888665555553 57899999999987 688999999998865

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.78  E-value=1e-18  Score=112.57  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=61.2

Q ss_pred             CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+++|||++.    +|+++++||||++||+.....+.+. +..+.++.++|++||+.+....||++++|..
T Consensus       129 S~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~-l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         129 SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANY-IKERTKNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             CHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence            6899999999999974    5799999999999999988877655 4455567799999999766778999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=1.2e-18  Score=113.77  Aligned_cols=84  Identities=26%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |.||+.|++++-|...+|+|||+||..+..|+...++-...+.+...++.|+|+|||+++.++ .||++++|++|++.. 
T Consensus       149 SSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~  228 (249)
T COG1134         149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME  228 (249)
T ss_pred             cHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEc
Confidence            689999999999999999999999999999999888877665444467899999999999985 699999999999975 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       229 G~~~~v  234 (249)
T COG1134         229 GSPEEV  234 (249)
T ss_pred             CCHHHH
Confidence            998875

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.75  E-value=9e-18  Score=104.03  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+.+++++..    +|+++++|||++++|+.....+...+.+...++.+++++||+.+....+|+++.|+.
T Consensus        79 S~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227          79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             cccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            6899999999999986    789999999999999998888877655544457899999999998878899999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.74  E-value=1.4e-17  Score=110.75  Aligned_cols=73  Identities=11%  Similarity=0.087  Sum_probs=62.6

Q ss_pred             CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      |+||+||+++|++++.    +|+++++|||+++||+.....+.+.+ ..+.++.++|++||++.....+|+++.+.++
T Consensus       172 S~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-~~~~~~~tii~isH~~~~~~~~d~~~~l~~~  248 (276)
T cd03241         172 SGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-KELSRSHQVLCITHLPQVAAMADNHFLVEKE  248 (276)
T ss_pred             ChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence            6899999999997654    99999999999999999888887654 4445578999999999877779999999865

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=1.7e-17  Score=107.00  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=59.8

Q ss_pred             CCCchhHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-C-cEEEEEecCcch-hhhCC--eEEEE
Q psy1506           1 MTGKSSCQLCFEAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-D-KTRILVTHQLQY-LNHVD--QIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral----~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~-~tvi~vtH~~~~-~~~~d--~v~~l   71 (85)
                      |+||+|++.+++++    +.+|+++++||||++||+.....+++.+.....+ | .++|++||++.. ...+|  +++++
T Consensus       128 S~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l  207 (213)
T cd03277         128 SGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCV  207 (213)
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEE
Confidence            78999998877554    5899999999999999999988888766554444 4 579999999755 45554  78888


Q ss_pred             cCce
Q psy1506          72 NNVS   75 (85)
Q Consensus        72 ~~g~   75 (85)
                      ++|+
T Consensus       208 ~~g~  211 (213)
T cd03277         208 YNGP  211 (213)
T ss_pred             ecCc
Confidence            8875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.73  E-value=1.3e-17  Score=119.12  Aligned_cols=79  Identities=22%  Similarity=0.380  Sum_probs=64.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-~   78 (85)
                      |||||.|+.||+.++.+|.+|||||||+.||..+.+.+- ..+..+  ..|+|+||||..++.. +++++.+++ .+. +
T Consensus       441 SGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe-~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~  516 (530)
T COG0488         441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE-EALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEF  516 (530)
T ss_pred             CHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence            799999999999999999999999999999998766554 434333  3599999999999965 899999986 443 2


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |+.++
T Consensus       517 ~g~y~~  522 (530)
T COG0488         517 EGGYED  522 (530)
T ss_pred             CCCHHH
Confidence             65544

>KOG0062|consensus

Probab=99.73  E-value=2.1e-17  Score=116.75  Aligned_cols=74  Identities=18%  Similarity=0.328  Sum_probs=63.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~   77 (85)
                      |||||+||+||...+.+|.+|+|||||+.||.++...+.+. ++.+  +..||+||||.+++.. |+++++.++|.+.
T Consensus       484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~A-l~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt  558 (582)
T KOG0062|consen  484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKA-LKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVT  558 (582)
T ss_pred             CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHH-HHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence            79999999999999999999999999999999877666543 3333  3479999999999864 9999999999875

>TIGR00634 recN DNA repair protein RecN

Probab=99.72  E-value=2.4e-17  Score=118.45  Aligned_cols=74  Identities=15%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             CCCchhHHHHHHHHhcC----CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~----p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~   75 (85)
                      |+||+||++||++++..    |+++|||||++|+|+.+...+...+ ....++.+||+|||++.....||+++++++|.
T Consensus       442 SgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l-~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~  519 (563)
T TIGR00634       442 SGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL-AQLSERHQVLCVTHLPQVAAHADAHFKVEKEG  519 (563)
T ss_pred             CHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence            78999999999999985    6999999999999999888887654 44456899999999998887899999998753

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.72  E-value=1.4e-17  Score=103.29  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=61.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+|||.||++.|+|+..|+.++||||+|.||..-+....++.+.+.. .|...+.||||.+..+...||+-|
T Consensus       136 SGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         136 SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             CcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence            79999999999999999999999999999999877777766666654 588999999999888766777655

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.70  E-value=5e-17  Score=115.96  Aligned_cols=71  Identities=15%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             CCCchhHHHHHHHHh----------cCCCEEEEecCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q psy1506           1 MTGKSSCQLCFEAVY----------KNADIYLLDDPL-SAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV   69 (85)
Q Consensus         1 ~~g~~~~~~laral~----------~~p~illlDEP~-~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~   69 (85)
                      |+||+||++||+||+          .+|++++||||| ++||+.....+... +... ++.++|++||+......+|+++
T Consensus       470 S~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~-l~~~-~~~~iiiish~~~~~~~~d~~~  547 (562)
T PHA02562        470 SQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSI-LDSL-KDTNVFVISHKDHDPQKFDRHL  547 (562)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHH-HHhC-CCCeEEEEECchhchhhhhcEE
Confidence            799999999999987          599999999998 78999988888765 4444 6789999999977777789999


Q ss_pred             EEcC
Q psy1506          70 FLNN   73 (85)
Q Consensus        70 ~l~~   73 (85)
                      +|.+
T Consensus       548 ~l~~  551 (562)
T PHA02562        548 KMEK  551 (562)
T ss_pred             EEEE
Confidence            9986

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.8e-16  Score=103.11  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhC--CeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV--DQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~--d~v~~l~~g~i~~   78 (85)
                      |+|.|+|..|+..++.+|++.|||||-||||..+-+.+.+-+-....++.++++|||....+.+.  |++.+|-+|+++.
T Consensus       146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~  225 (251)
T COG0396         146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK  225 (251)
T ss_pred             CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence            79999999999999999999999999999999877766554333345689999999998888764  9999999999975


Q ss_pred             -Ccc
Q psy1506          79 -GWV   81 (85)
Q Consensus        79 -g~~   81 (85)
                       |.+
T Consensus       226 sG~~  229 (251)
T COG0396         226 SGDP  229 (251)
T ss_pred             cCCH
Confidence             877

>PRK10869 recombination and repair protein; Provisional

Probab=99.69  E-value=9.2e-17  Score=115.35  Aligned_cols=73  Identities=14%  Similarity=0.014  Sum_probs=64.0

Q ss_pred             CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      |+||+||++||++++.    +|++++||||++|+|..+...+.+.+ ....++.++|+|||++.....+|+.+.+.++
T Consensus       432 SgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l-~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~  508 (553)
T PRK10869        432 SGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLL-RQLGESTQVMCVTHLPQVAGCGHQHFFVSKE  508 (553)
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            7899999999999997    58999999999999999888887654 4445678999999999888889999999864

>KOG0927|consensus

Probab=99.69  E-value=4.3e-17  Score=115.71  Aligned_cols=81  Identities=22%  Similarity=0.370  Sum_probs=65.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCcee-ec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSK-TS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i-~~   78 (85)
                      |+|||-|++|||+|..+|++++|||||++||.++...+ +..+....+. ++++++|.-+++. .|.+|+.+++++. .+
T Consensus       223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL-ee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y  300 (614)
T KOG0927|consen  223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL-EEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYY  300 (614)
T ss_pred             CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeee
Confidence            79999999999999999999999999999999865544 4444433322 8999999999986 5999999998874 34


Q ss_pred             -Ccccc
Q psy1506          79 -GWVEE   83 (85)
Q Consensus        79 -g~~~~   83 (85)
                       |+.+.
T Consensus       301 ~Gnydq  306 (614)
T KOG0927|consen  301 EGNYDQ  306 (614)
T ss_pred             cCCHHH
Confidence             76554

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.65  E-value=1.6e-16  Score=101.30  Aligned_cols=77  Identities=17%  Similarity=0.065  Sum_probs=63.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+|+..+++++ .+|+++++|||++++|+.....+...+++.+. .+.+++++||+.+....+|++..+++|++..
T Consensus        93 s~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~  170 (200)
T cd03280          93 SSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEF  170 (200)
T ss_pred             HHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEE
Confidence            57999999999885 89999999999999999988877655455443 5789999999865567799999999988753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK03918 chromosome segregation protein; Provisional

Probab=99.64  E-value=8.4e-16  Score=114.22  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             CCCchhH------HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSC------QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~------~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+++      +++|++++.+|++++|||||++||+.....+...+......+.++|+|||+..+...||++++|+.
T Consensus       790 S~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~  868 (880)
T PRK03918        790 SGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSL  868 (880)
T ss_pred             CHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEe
Confidence            7899994      555667889999999999999999998888876544333356799999999887777999999983

>KOG0062|consensus

Probab=99.64  E-value=9.1e-17  Score=113.54  Aligned_cols=79  Identities=24%  Similarity=0.390  Sum_probs=62.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee-c
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT-S   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~-~   78 (85)
                      |||-|=|++|||||..+|++|||||||+.||..+...+ +..+..+  +.|+++||||-.++.. |..|+.+++-++. +
T Consensus       200 SGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL-e~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~Y  276 (582)
T KOG0062|consen  200 SGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL-ENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYY  276 (582)
T ss_pred             CcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH-HHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhh
Confidence            79999999999999999999999999999999865443 3444433  3799999999999975 7788888765553 2


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+.+
T Consensus       277 kGN~~  281 (582)
T KOG0062|consen  277 KGNYS  281 (582)
T ss_pred             cCcHH
Confidence             5543

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=5e-16  Score=97.97  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~   73 (85)
                      |+|.+||+.|||.++.+-+|++|||||++||..+++-+.+.+.+....|..++=+-||.+.-. .+||++-+..
T Consensus       154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            799999999999999999999999999999999988888765555567999999999987754 4899887753

>TIGR00618 sbcc exonuclease SbcC

Probab=99.63  E-value=1.3e-15  Score=115.38  Aligned_cols=73  Identities=11%  Similarity=0.007  Sum_probs=63.2

Q ss_pred             CCCchhHHHHHHHHhc----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEE
Q psy1506           1 MTGKSSCQLCFEAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIV   69 (85)
Q Consensus         1 ~~g~~~~~~laral~~----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~   69 (85)
                      |||++++++||+||+.          +|+++|+||||++||+.....++..+......|++|++|||+++... .+++|.
T Consensus       952 SgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~ 1031 (1042)
T TIGR00618       952 SGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRIL 1031 (1042)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEE
Confidence            7999999999999985          79999999999999999888887765444446889999999998864 589999


Q ss_pred             EEcC
Q psy1506          70 FLNN   73 (85)
Q Consensus        70 ~l~~   73 (85)
                      +++.
T Consensus      1032 v~~~ 1035 (1042)
T TIGR00618      1032 VKKT 1035 (1042)
T ss_pred             EEEC
Confidence            9975

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.61  E-value=2e-15  Score=106.14  Aligned_cols=82  Identities=13%  Similarity=0.152  Sum_probs=74.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |||+.||+-+||-|..+|+++++.+||.|||..+.+.+.+.+++...+|+.|+++|-+++++ ..||+|.+|.+|++.. 
T Consensus       405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~  484 (501)
T COG3845         405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI  484 (501)
T ss_pred             CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence            79999999999999999999999999999999999999888888778899999999999985 6799999999999874 


Q ss_pred             Cccc
Q psy1506          79 GWVE   82 (85)
Q Consensus        79 g~~~   82 (85)
                      .+++
T Consensus       485 ~~~~  488 (501)
T COG3845         485 VPPE  488 (501)
T ss_pred             cccc
Confidence            4444

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.7e-15  Score=95.21  Aligned_cols=62  Identities=19%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL   62 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~   62 (85)
                      |.||+.|+++||-+++.+++.|||||+++||.+....+-..+.....+|..|+.+||.+...
T Consensus       132 SAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             chhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence            78999999999999999999999999999999865555444334455788999999987554

>KOG0065|consensus

Probab=99.60  E-value=1.3e-16  Score=121.43  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--hhhCCeEEEEcC-cee
Q psy1506           1 MTGKSSCQLCFEAVYKNA-DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--LNHVDQIVFLNN-VSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p-~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~~~~d~v~~l~~-g~i   76 (85)
                      |+.||+|+.||--|+.+| .|++|||||||||..++..+++.+.+....|+||+++=|+++.  .+..|++++|++ |+.
T Consensus       931 s~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqt 1010 (1391)
T KOG0065|consen  931 STEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQT 1010 (1391)
T ss_pred             CHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeE
Confidence            688999999999999999 8999999999999999998887766656679999999999975  477899999997 465


Q ss_pred             ec-Cccc
Q psy1506          77 TS-GWVE   82 (85)
Q Consensus        77 ~~-g~~~   82 (85)
                      ++ |+..
T Consensus      1011 VY~G~lG 1017 (1391)
T KOG0065|consen 1011 VYFGPLG 1017 (1391)
T ss_pred             EEecCcc
Confidence            54 7654

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.59  E-value=1.1e-15  Score=106.18  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeecC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTSG   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~g   79 (85)
                      |||||+|+++.-|++-+.+|+++||--+.-||..++..++.++-..+ .|+||+.||||-.+...+||.+.+++|++.+-
T Consensus       450 StGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             ccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence            79999999999999999999999999999999999999888776655 59999999999999999999999999998764


Q ss_pred             cc
Q psy1506          80 WV   81 (85)
Q Consensus        80 ~~   81 (85)
                      .+
T Consensus       530 tg  531 (546)
T COG4615         530 TG  531 (546)
T ss_pred             cc
Confidence            43

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.57  E-value=1.8e-15  Score=98.42  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      -|.=|+|.||.|++.+|+++|.||||+++++.+...++..+..... +|.|+++++||+..+. .||++-+|.=|+-++ 
T Consensus       161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES  240 (330)
T COG4170         161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES  240 (330)
T ss_pred             cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence            3788999999999999999999999999999999999876554443 4789999999999874 699999999887654 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      +..+++
T Consensus       241 a~~e~l  246 (330)
T COG4170         241 APSEEL  246 (330)
T ss_pred             cchhHH
Confidence            554443

>PRK01156 chromosome segregation protein; Provisional

Probab=99.56  E-value=1.3e-14  Score=108.52  Aligned_cols=72  Identities=14%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             CCCchhHHHH------HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-C-cEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLC------FEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-D-KTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~l------aral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~-~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+||++++++      ||+++.+|++++|||||++||+.....+...+..... . + .++|++||+..+...||+++.+
T Consensus       803 S~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~  882 (895)
T PRK01156        803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEV  882 (895)
T ss_pred             CHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEE
Confidence            7899999975      5999999999999999999999987777655432222 2 3 4899999999988889999999


Q ss_pred             c
Q psy1506          72 N   72 (85)
Q Consensus        72 ~   72 (85)
                      .
T Consensus       883 ~  883 (895)
T PRK01156        883 K  883 (895)
T ss_pred             E
Confidence            7

>TIGR00606 rad50 rad50

Probab=99.56  E-value=1.3e-14  Score=112.06  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=57.5

Q ss_pred             CCCchh------HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCcchhh-h----
Q psy1506           1 MTGKSS------CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LKDKTRILVTHQLQYLN-H----   64 (85)
Q Consensus         1 ~~g~~~------~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~~~~~-~----   64 (85)
                      |+||+|      |++||||++.+|++++|||||++||+.+...+...+....     ..|.++|++||++.++. .    
T Consensus      1201 S~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~ 1280 (1311)
T TIGR00606      1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSE 1280 (1311)
T ss_pred             chhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhcc
Confidence            789999      9999999999999999999999999998887765543322     13679999999998753 2    


Q ss_pred             -CCeEEEEc
Q psy1506          65 -VDQIVFLN   72 (85)
Q Consensus        65 -~d~v~~l~   72 (85)
                       +++++.+.
T Consensus      1281 ~~~~~~~~~ 1289 (1311)
T TIGR00606      1281 YVEKFYRLK 1289 (1311)
T ss_pred             ccceeeeee
Confidence             34555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0927|consensus

Probab=99.56  E-value=3.8e-15  Score=105.97  Aligned_cols=74  Identities=23%  Similarity=0.371  Sum_probs=61.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~   77 (85)
                      |.||+.||.||+.++..|.+++|||||++||..+...+. ..++.+  ..++|+||||+..+.. ++++++..+|.+.
T Consensus       511 S~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~la-eaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~  585 (614)
T KOG0927|consen  511 SDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALA-EAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVT  585 (614)
T ss_pred             ccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHH-HHHhcc--CCceeeeechhhHHHHHHHHhHhhccCcee
Confidence            689999999999999999999999999999998655543 444443  3489999999998864 7899888887654

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.56  E-value=9.9e-15  Score=109.90  Aligned_cols=71  Identities=18%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+++++||++++    .+|+++|||||+++||+.+...+...+ ....++.++|+|||++..+..||+++.+.
T Consensus      1091 S~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~-~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168      1091 SGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLL-KEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred             CccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHH-HHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence            799999999999984    677999999999999999888887654 44445678999999998887799886554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.55  E-value=2e-14  Score=101.10  Aligned_cols=72  Identities=24%  Similarity=0.413  Sum_probs=60.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYLNH-VDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~~~-~d~v~~l~~   73 (85)
                      |||..||+++|.||.+++++++||||++.||.+.+-.+. ..++.. . +++|.++|.||+..+.+ +||+++.++
T Consensus       457 SGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G  531 (591)
T COG1245         457 SGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG  531 (591)
T ss_pred             CchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence            799999999999999999999999999999998544443 344443 2 46899999999999876 799999864

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.54  E-value=2.9e-14  Score=100.34  Aligned_cols=72  Identities=25%  Similarity=0.334  Sum_probs=60.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH-VDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~   73 (85)
                      |||..||++||.|+.++++++++|||+|-||...+-..... ++.+. .+++|++|.||+..+.+ +|-|.++.+
T Consensus       215 SGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~-Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG  288 (591)
T COG1245         215 SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV-IRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG  288 (591)
T ss_pred             CchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH-HHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence            79999999999999999999999999999999865555444 44444 47999999999999976 788877764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.54  E-value=2e-14  Score=103.66  Aligned_cols=71  Identities=21%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+|++||+++||.++++|++++|||.|++||+.+...+++.+ +....+.|+|-|+|+.......++.+-+.
T Consensus       517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            689999999999999999999999999999999888887664 44446889999999987766555554443

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.53  E-value=3e-14  Score=94.50  Aligned_cols=72  Identities=17%  Similarity=0.124  Sum_probs=56.0

Q ss_pred             CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhC---Ce
Q psy1506           1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHV---DQ   67 (85)
Q Consensus         1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~---d~   67 (85)
                      |+||+|++++|++|+         .+|+++++|||+++||+...+.+++.+.+ .  + .+++++|+...+ ..|   .+
T Consensus       185 S~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~-~--~-q~ii~~~~~~~~~~~~~~~~~  260 (270)
T cd03242         185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG-R--V-QTFVTTTDLADFDALWLRRAQ  260 (270)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc-C--C-CEEEEeCCchhccchhccCcc
Confidence            689999999999985         79999999999999999988877655432 2  2 456666665544 334   68


Q ss_pred             EEEEcCcee
Q psy1506          68 IVFLNNVSK   76 (85)
Q Consensus        68 v~~l~~g~i   76 (85)
                      ++.+++|++
T Consensus       261 i~~l~~g~i  269 (270)
T cd03242         261 IFRVDAGTL  269 (270)
T ss_pred             EEEEeCcEE
Confidence            999998875

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.51  E-value=5.7e-14  Score=103.62  Aligned_cols=84  Identities=24%  Similarity=0.300  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc-----
Q psy1506           1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN-----   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~-----   72 (85)
                      |||.-||+-||.-|.+..   -+++|||||.||-....+++++.+-+...+|-|||+|.|+++.++.+|.|+=|-     
T Consensus       824 SGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~  903 (935)
T COG0178         824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGD  903 (935)
T ss_pred             cchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCC
Confidence            799999999999999887   799999999999888888888765555667999999999999999999999884     


Q ss_pred             -Cceeec-Cccccc
Q psy1506          73 -NVSKTS-GWVEEI   84 (85)
Q Consensus        73 -~g~i~~-g~~~~~   84 (85)
                       .|.++. |+|+++
T Consensus       904 ~GG~iva~GTPeev  917 (935)
T COG0178         904 GGGEIVASGTPEEV  917 (935)
T ss_pred             CCceEEEecCHHHH
Confidence             466764 999886

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.50  E-value=3.4e-14  Score=92.17  Aligned_cols=74  Identities=12%  Similarity=0.000  Sum_probs=58.5

Q ss_pred             CCCchhHHHHHHHH--hcCCCEEEEecC---CCCCCHHHHHHHHHHHHhhh--cCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAV--YKNADIYLLDDP---LSAVDMHVGKHLFEDCISGF--LKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral--~~~p~illlDEP---~~~LD~~~~~~i~~~~~~~~--~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+|++++..+++++  +.+|+++|||||   |+++|+.......   ++.+  ..+.+++++||..+....|+++..+++
T Consensus        91 S~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i---l~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~  167 (222)
T cd03285          91 STFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI---AEYIATQIKCFCLFATHFHELTALADEVPNVKN  167 (222)
T ss_pred             ChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH---HHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence            68999999999999  899999999999   8889987654332   2222  247899999997444567899888888


Q ss_pred             ceee
Q psy1506          74 VSKT   77 (85)
Q Consensus        74 g~i~   77 (85)
                      |++.
T Consensus       168 g~~~  171 (222)
T cd03285         168 LHVT  171 (222)
T ss_pred             EEEE
Confidence            8764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0066|consensus

Probab=99.50  E-value=7.1e-14  Score=98.72  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=61.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee--
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT--   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~--   77 (85)
                      |+||+.||++|-.-+..|+++||||||++||.+....+.+. ++.+  +..||+||||...+.. ....+++++-.|.  
T Consensus       706 SGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI  782 (807)
T KOG0066|consen  706 SGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEI  782 (807)
T ss_pred             CCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhc
Confidence            79999999999999999999999999999999866655433 3333  3479999999888754 4678888775443  


Q ss_pred             cCcccc
Q psy1506          78 SGWVEE   83 (85)
Q Consensus        78 ~g~~~~   83 (85)
                      .|+.++
T Consensus       783 dGdFeD  788 (807)
T KOG0066|consen  783 DGDFED  788 (807)
T ss_pred             cccHHH
Confidence            255443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.49  E-value=1.1e-13  Score=105.25  Aligned_cols=73  Identities=16%  Similarity=0.021  Sum_probs=60.5

Q ss_pred             CCCchhHHHHHHHHhc--------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYK--------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~--------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l   71 (85)
                      |+||+++++||+||+.        +|+++++||||++||+.....++..+......|++|++|||....... ..++.|-
T Consensus       951 SgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~ 1030 (1047)
T PRK10246        951 SGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK 1030 (1047)
T ss_pred             CHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceEEEE
Confidence            7999999999999995        899999999999999998888887654444568999999997666544 5677766


Q ss_pred             cC
Q psy1506          72 NN   73 (85)
Q Consensus        72 ~~   73 (85)
                      ..
T Consensus      1031 k~ 1032 (1047)
T PRK10246       1031 KI 1032 (1047)
T ss_pred             EC
Confidence            53

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.46  E-value=2.2e-13  Score=103.04  Aligned_cols=71  Identities=13%  Similarity=0.022  Sum_probs=60.5

Q ss_pred             CCCchhHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~----~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||++++++|++|+.    +|++++||||+++||+.+...+... +..+.++..+|++||+...+..||+++.+.
T Consensus      1076 Sgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~-l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169      1076 SGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKL-IREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHH-HHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence            7999999999999984    7899999999999999988877664 455555678999999988778899987765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.45  E-value=2.2e-13  Score=86.90  Aligned_cols=74  Identities=11%  Similarity=0.047  Sum_probs=58.6

Q ss_pred             chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEcCceee
Q psy1506           4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLNNVSKT   77 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~   77 (85)
                      .++++..+.++..+|+++++|||++++|+.....+...+++.. ..+.++|++||+.+....++++..++++.+.
T Consensus        95 e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~  169 (202)
T cd03243          95 ELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHME  169 (202)
T ss_pred             HHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEE
Confidence            4566777788889999999999999999987776665545443 3478999999998887777877777776664

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.44  E-value=1.7e-14  Score=91.46  Aligned_cols=84  Identities=23%  Similarity=0.306  Sum_probs=67.3

Q ss_pred             CCCchhHHHHHHHHh-------cCCCEEEEecCCCCCCHHHHHHHHHHHHh-hhcCCcEEEEEecCcch-hhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVY-------KNADIYLLDDPLSAVDMHVGKHLFEDCIS-GFLKDKTRILVTHQLQY-LNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~-------~~p~illlDEP~~~LD~~~~~~i~~~~~~-~~~~~~tvi~vtH~~~~-~~~~d~v~~l   71 (85)
                      |+|.=|||-+|...+       -..+++++|||.++||..-...+ ..++. ....|.+||+.+||++. ++.+|+++.+
T Consensus       127 SGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL  205 (248)
T COG4138         127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLL  205 (248)
T ss_pred             CcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHH
Confidence            688899998887765       23469999999999999744444 44444 45579999999999975 7899999999


Q ss_pred             cCceee-cCcccccC
Q psy1506          72 NNVSKT-SGWVEEIL   85 (85)
Q Consensus        72 ~~g~i~-~g~~~~~~   85 (85)
                      ++|++. .|..+|++
T Consensus       206 ~rG~l~~~G~~~eVl  220 (248)
T COG4138         206 KRGKLLASGRREEVL  220 (248)
T ss_pred             hcCeEEeecchhhhc
Confidence            999886 49888875

>PRK02224 chromosome segregation protein; Provisional

Probab=99.43  E-value=5.5e-13  Score=99.52  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             CCCchh------HHHHHHHHhcC-----C-CEEEEecCCCCCCHHHHHHHHHHHHhhhc-CC-cEEEEEecCcchhhhCC
Q psy1506           1 MTGKSS------CQLCFEAVYKN-----A-DIYLLDDPLSAVDMHVGKHLFEDCISGFL-KD-KTRILVTHQLQYLNHVD   66 (85)
Q Consensus         1 ~~g~~~------~~~laral~~~-----p-~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~-~tvi~vtH~~~~~~~~d   66 (85)
                      |+||++      |+++++++..+     | ++++|||||+++|+.....+...+ ..+. .| .++|++||+..++..+|
T Consensus       783 S~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l-~~~~~~~~~qviiish~~~~~~~ad  861 (880)
T PRK02224        783 SGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLV-ESMRRLGVEQIVVVSHDDELVGAAD  861 (880)
T ss_pred             CccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHH-HHHHhcCCCeEEEEECChHHHHhcC
Confidence            799999      89999998863     2 679999999999999887777543 4433 34 47999999999887899


Q ss_pred             eEEEEcCc
Q psy1506          67 QIVFLNNV   74 (85)
Q Consensus        67 ~v~~l~~g   74 (85)
                      +++.+.+.
T Consensus       862 ~~~~~~~~  869 (880)
T PRK02224        862 DLVRVEKD  869 (880)
T ss_pred             eeEEeecC
Confidence            99999753

>PRK00064 recF recombination protein F; Reviewed

Probab=99.43  E-value=5.8e-13  Score=91.65  Aligned_cols=73  Identities=25%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h--CCeE
Q psy1506           1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H--VDQI   68 (85)
Q Consensus         1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~--~d~v   68 (85)
                      |+||++++.+|++++         .+|++++||||+++||+..++.+++.+. ..  +..+++++|+...+. .  .+++
T Consensus       275 S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~-~~--~~qv~it~~~~~~~~~~~~~~~i  351 (361)
T PRK00064        275 STGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLK-GL--GAQVFITTTDLEDLADLLENAKI  351 (361)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHh-cc--CCEEEEEcCChhhhhhhhccCcE
Confidence            789999999999885         7999999999999999998777765432 21  457899999876543 2  3578


Q ss_pred             EEEcCcee
Q psy1506          69 VFLNNVSK   76 (85)
Q Consensus        69 ~~l~~g~i   76 (85)
                      +.+++|++
T Consensus       352 ~~v~~G~i  359 (361)
T PRK00064        352 FHVEQGKI  359 (361)
T ss_pred             EEEeCCEE
Confidence            99999876

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.34  E-value=4.2e-12  Score=93.93  Aligned_cols=85  Identities=20%  Similarity=0.214  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc------
Q psy1506           1 MTGKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN------   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~------   72 (85)
                      |+|..||+-||.-+-++=-  +++||||+.||-+....+++..+.+....|-|+|+|.||.+.+..+|+++=+-      
T Consensus       483 SGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~  562 (935)
T COG0178         483 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEH  562 (935)
T ss_pred             ChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcC
Confidence            7999999999999987654  89999999999998888888776655556889999999999999999999874      


Q ss_pred             Cceeec-CcccccC
Q psy1506          73 NVSKTS-GWVEEIL   85 (85)
Q Consensus        73 ~g~i~~-g~~~~~~   85 (85)
                      .|.+++ |+|++++
T Consensus       563 GGeIv~~Gtp~~i~  576 (935)
T COG0178         563 GGEIVAEGTPEELL  576 (935)
T ss_pred             CCEEEEccCHHHHH
Confidence            467775 9988764

>KOG0066|consensus

Probab=99.34  E-value=2.6e-13  Score=95.91  Aligned_cols=74  Identities=22%  Similarity=0.414  Sum_probs=60.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~   77 (85)
                      |+|-|-||++||||..+|-+|.|||||+.||......+ ...++-|  .+|.++||||-.++.. |..|+.|++.++.
T Consensus       414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLh  488 (807)
T KOG0066|consen  414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLH  488 (807)
T ss_pred             CCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence            78999999999999999999999999999999643332 3334444  3599999999999964 8999999876553

>TIGR00611 recf recF protein

Probab=99.31  E-value=5.7e-12  Score=86.96  Aligned_cols=59  Identities=22%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             CCCchhHHHHHHHHhc---------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506           1 MTGKSSCQLCFEAVYK---------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL   62 (85)
Q Consensus         1 ~~g~~~~~~laral~~---------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~   62 (85)
                      |+||++++.+|.+|+.         +|+++|||||+++||+..++.+++.+..   .|..+++++|+.+.+
T Consensus       277 S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~---~~~qv~it~~~~~~~  344 (365)
T TIGR00611       277 SQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS---LGVQVFVTAISLDHL  344 (365)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh---cCCEEEEEecChhhc
Confidence            7899999999999999         9999999999999999877777654322   257999999987654

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.28  E-value=2.1e-11  Score=78.24  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||++.++||--|+    ..+++++||||.++||..+...+... +....++.-+|++||+...+..+++.+.+.
T Consensus       138 SgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~-l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~  212 (220)
T PF02463_consen  138 SGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADL-LKELSKQSQFIITTHNPEMFEDADKLIGVT  212 (220)
T ss_dssp             -HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHH-HHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            789999999986653    67889999999999999998888765 445556688999999998888888766553

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0060|consensus

Probab=99.27  E-value=1.3e-11  Score=88.74  Aligned_cols=70  Identities=21%  Similarity=0.258  Sum_probs=61.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |.|.+||+++||.++++|++-+|||.||++|.+....+++.+.   +.|.|.|-|+|+....+.-|.++.|+.
T Consensus       572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence            6899999999999999999999999999999998777775532   348899999999888888888888875

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.27  E-value=1.2e-11  Score=78.13  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=44.2

Q ss_pred             HHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEecCcchhhhCC
Q psy1506           9 LCFEAVYK--NADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-DKTRILVTHQLQYLNHVD   66 (85)
Q Consensus         9 ~laral~~--~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d   66 (85)
                      .+++++..  +|+++++|||++|+|+.....+...+++... + +.+++++||+.+....++
T Consensus        68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~  129 (185)
T smart00534       68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD  129 (185)
T ss_pred             HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence            45666665  9999999999999999877777666555443 3 789999999986555554

>KOG2355|consensus

Probab=99.25  E-value=2.7e-11  Score=78.66  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |-|||.|+.|++.|++.-++++|||-|-.||.-++..+++.+..... +|.||++.||-++-+ ....+++.+++|++..
T Consensus       149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            57999999999999999999999999999999988888876555554 589999999998876 4689999999998863

>KOG0065|consensus

Probab=99.16  E-value=2.1e-11  Score=93.62  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=70.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch--hhhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY--LNHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~--~~~~d~v~~l~~g~i~   77 (85)
                      |+|||+|+++|-+++.+|+++.+||+|.|||..+.-++.+.+.+... -+.|.++.-+.+..  ....|.|.+|.+|.++
T Consensus       262 SGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i  341 (1391)
T KOG0065|consen  262 SGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI  341 (1391)
T ss_pred             cCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE
Confidence            79999999999999999999999999999999998888876555444 36788887787643  5678999999999887


Q ss_pred             c-Cccccc
Q psy1506          78 S-GWVEEI   84 (85)
Q Consensus        78 ~-g~~~~~   84 (85)
                      + |+.+++
T Consensus       342 y~Gp~d~~  349 (1391)
T KOG0065|consen  342 YQGPRDEV  349 (1391)
T ss_pred             EeccHHHH
Confidence            5 887664

>PRK14079 recF recombination protein F; Provisional

Probab=99.15  E-value=2.1e-10  Score=78.79  Aligned_cols=72  Identities=14%  Similarity=0.023  Sum_probs=54.9

Q ss_pred             CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+||++++.+|+.|+         .+|++++||||++.||......+++.+...   . .+++++-  +....+++++.+
T Consensus       265 S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~-q~~it~t--~~~~~~~~~~~~  338 (349)
T PRK14079        265 SRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---P-QAIVAGT--EAPPGAALTLRI  338 (349)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---C-cEEEEcC--CCCCCCceEEEE
Confidence            789999999999998         899999999999999998777776543221   1 2333322  234568999999


Q ss_pred             cCceeec
Q psy1506          72 NNVSKTS   78 (85)
Q Consensus        72 ~~g~i~~   78 (85)
                      ++|.+..
T Consensus       339 ~~~~~~~  345 (349)
T PRK14079        339 EAGVFTP  345 (349)
T ss_pred             eccEecC
Confidence            9987764

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.11  E-value=2.5e-10  Score=73.69  Aligned_cols=60  Identities=18%  Similarity=0.118  Sum_probs=47.1

Q ss_pred             chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C---CcEEEEEecCcchhh
Q psy1506           4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K---DKTRILVTHQLQYLN   63 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~---~~tvi~vtH~~~~~~   63 (85)
                      .+||++++++++.+|+++++|||++|+|+.....+...+++... +   +.+++++||+.+...
T Consensus        95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~  158 (213)
T cd03281          95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN  158 (213)
T ss_pred             HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence            36899999999999999999999999999765556544444432 2   248999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.09  E-value=1.9e-10  Score=73.93  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhh
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNH   64 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~   64 (85)
                      .|++| +..+.+++.+|+++++|||++|+|+.....+...+++.+. .+.+++++||+.+....
T Consensus        94 ~e~~~-~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282          94 SEMSE-TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             HHHHH-HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            45564 5666778899999999999999999776666555555443 57899999999877543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.08  E-value=4e-10  Score=79.29  Aligned_cols=76  Identities=16%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-h-CCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-H-VDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i   76 (85)
                      ||||+.|..||+++...|.+++.||-.|.||+.++..+...+-+..+ .|.|++++||+++... . .|+++.+.-|..
T Consensus       509 StGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v  587 (593)
T COG2401         509 STGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV  587 (593)
T ss_pred             CcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence            79999999999999999999999999999999999999887655544 4899999999999874 3 588888765543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.08  E-value=5.2e-10  Score=71.56  Aligned_cols=58  Identities=16%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             hHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh
Q psy1506           6 SCQLCFEAVYK--NADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN   63 (85)
Q Consensus         6 ~~~~laral~~--~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~   63 (85)
                      +++.-+...+.  +|+++++|||++++|+.....+...+++.. .++.++|++||+++.+.
T Consensus        92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~  152 (199)
T cd03283          92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD  152 (199)
T ss_pred             HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence            34444444445  999999999999999987776654444433 45789999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.08  E-value=3.1e-10  Score=73.43  Aligned_cols=73  Identities=15%  Similarity=0.122  Sum_probs=46.8

Q ss_pred             CCchhHH----HHHHHH--hcCCCEEEEecC---CCCCCHHHHHHHHHHHHhhh-cC-CcEEEEEecCcchhhhCCeEEE
Q psy1506           2 TGKSSCQ----LCFEAV--YKNADIYLLDDP---LSAVDMHVGKHLFEDCISGF-LK-DKTRILVTHQLQYLNHVDQIVF   70 (85)
Q Consensus         2 ~g~~~~~----~laral--~~~p~illlDEP---~~~LD~~~~~~i~~~~~~~~-~~-~~tvi~vtH~~~~~~~~d~v~~   70 (85)
                      .||++..    .+++++  +.+|++++||||   |+++|...   +...+++.+ .. +.++|++||+.+....++++..
T Consensus        88 ~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~  164 (216)
T cd03284          88 GGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPR  164 (216)
T ss_pred             cCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCC
Confidence            4666643    355555  469999999999   88888753   222233322 23 7899999999765555665555


Q ss_pred             EcCceee
Q psy1506          71 LNNVSKT   77 (85)
Q Consensus        71 l~~g~i~   77 (85)
                      +.++++.
T Consensus       165 v~~~~~~  171 (216)
T cd03284         165 VKNFHVA  171 (216)
T ss_pred             eEEEEEE
Confidence            5555543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.07  E-value=7.9e-10  Score=83.42  Aligned_cols=73  Identities=14%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             CCCchhHHHHHHHHh------cC--CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY------KN--ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~------~~--p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |||++=.++||-+|+      .+  -++++|||||..||+.....+...+-.....+..|++|||+.++...++.++.++
T Consensus       817 SGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i~V~  896 (908)
T COG0419         817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVK  896 (908)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEEEEE
Confidence            678877666665544      66  7999999999999999888887665444445799999999998888888888876


Q ss_pred             C
Q psy1506          73 N   73 (85)
Q Consensus        73 ~   73 (85)
                      .
T Consensus       897 k  897 (908)
T COG0419         897 K  897 (908)
T ss_pred             e
Confidence            4

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.04  E-value=5.3e-10  Score=87.16  Aligned_cols=57  Identities=21%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             CCCchhHHH----HHHH--------HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506           1 MTGKSSCQL----CFEA--------VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus         1 ~~g~~~~~~----lara--------l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      |+||+|+++    +|++        +..+|++++|||||+++|+.+...++..+ ..+  +.++|++|+.+.
T Consensus      1249 SgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll-~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680      1249 SGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLL-RAL--DLDFVMTSEREW 1317 (1353)
T ss_pred             CchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH-HHh--CCCEEEEccchh
Confidence            799999996    5755        45799999999999999999888887654 333  678999999764

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.01  E-value=3.9e-10  Score=84.10  Aligned_cols=63  Identities=14%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNH   64 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~   64 (85)
                      |.||++++.+++++ .+|.++|+|||++|+|+.....+...++..+ ..+.++|++||+.+....
T Consensus       392 S~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~  455 (782)
T PRK00409        392 SGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL  455 (782)
T ss_pred             HHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence            56899999999998 8999999999999999988777765555544 357899999999876543

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.00  E-value=1.9e-09  Score=67.95  Aligned_cols=61  Identities=20%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh
Q psy1506           1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL   62 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~   62 (85)
                      |.|+++.+.++..+...+   .++++|||-++|.|...+.+.+.+ ....+ +.-+|++||.+..+
T Consensus       238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l-~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELL-KELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHH-HHTGGGSSEEEEEES-GGG-
T ss_pred             CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHH-HhhCccCCEEEEeCccchhc
Confidence            579999988888888666   899999999999999888888654 44443 78999999998654

>KOG0063|consensus

Probab=98.94  E-value=3.6e-09  Score=74.70  Aligned_cols=73  Identities=25%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~   73 (85)
                      |+|..||.++|.+.+.+++++++|||.+.||.+.+.+....+......+.=+|+|.||++.+.+ .|-+.++..
T Consensus       215 sggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  215 SGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG  288 (592)
T ss_pred             ccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence            6899999999999999999999999999999985555443333334457789999999999876 677777753

>KOG0064|consensus

Probab=98.91  E-value=1.3e-09  Score=78.34  Aligned_cols=67  Identities=18%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVF   70 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~   70 (85)
                      |+|.+||+++||.++++|++-+|||.||++.+.....+++..   ..-|.+.+-|||++..+.+-...+-
T Consensus       614 sgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~a---k~~gi~llsithrpslwk~h~~ll~  680 (728)
T KOG0064|consen  614 SGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA---KDAGISLLSITHRPSLWKYHTHLLE  680 (728)
T ss_pred             cchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHH---HhcCceEEEeecCccHHHHHHHHHh
Confidence            689999999999999999999999999999888777777643   2247899999999987765444333

>KOG0063|consensus

Probab=98.82  E-value=4.9e-09  Score=74.07  Aligned_cols=72  Identities=21%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhh--hcCCcEEEEEecCcchhhh-CCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG--FLKDKTRILVTHQLQYLNH-VDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~--~~~~~tvi~vtH~~~~~~~-~d~v~~l~~   73 (85)
                      |+|..||+++|.+|-+.+++++.|||.+-||.+. +......+..  +..++|-++|.||+-...+ +||+++.+.
T Consensus       458 SggelQRval~KOGGKpAdvYliDEpsAylDSeQ-Ri~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  458 SGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ-RIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             CchhhHHHHHHHhcCCCCceEEecCchhhcChHH-HHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            7899999999999999999999999999999974 3333333333  2356899999999876655 899998864

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.81  E-value=2e-08  Score=62.55  Aligned_cols=71  Identities=15%  Similarity=0.001  Sum_probs=48.5

Q ss_pred             CCchh------HHHHHHHHhcCCCEEEEecCCCCCC---HHHHHHHHHHHHhhhcCCcEEEEEecCcch---------hh
Q psy1506           2 TGKSS------CQLCFEAVYKNADIYLLDDPLSAVD---MHVGKHLFEDCISGFLKDKTRILVTHQLQY---------LN   63 (85)
Q Consensus         2 ~g~~~------~~~laral~~~p~illlDEP~~~LD---~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~---------~~   63 (85)
                      .|+.|      +.....+...+|+++++|||++.+|   ......+...+......|.|+++++|....         +.
T Consensus        74 ~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~  153 (187)
T cd01124          74 PAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVE  153 (187)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCcee
Confidence            45666      4444455667999999999999998   554444443322223458899999997643         43


Q ss_pred             -hCCeEEEEc
Q psy1506          64 -HVDQIVFLN   72 (85)
Q Consensus        64 -~~d~v~~l~   72 (85)
                       .+|.++.|+
T Consensus       154 ~~aD~ii~l~  163 (187)
T cd01124         154 YLVDGVIRLR  163 (187)
T ss_pred             EeeeEEEEEE
Confidence             479898887

A related protein is found in archaea.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.78  E-value=9.9e-09  Score=76.64  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=48.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY   61 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~   61 (85)
                      |.||+++..+++++ .+|.++|+|||++|+|+.....+...++..+. .|.++|++||+.+.
T Consensus       387 S~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL  447 (771)
T TIGR01069       387 SGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL  447 (771)
T ss_pred             HHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence            46888888888776 78999999999999999988777555555543 57899999998765

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.77  E-value=3.9e-08  Score=65.71  Aligned_cols=65  Identities=17%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--h------------hhCCeEEEEcCceee
Q psy1506          12 EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--L------------NHVDQIVFLNNVSKT   77 (85)
Q Consensus        12 ral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~------------~~~d~v~~l~~g~i~   77 (85)
                      .+...+|+++++|||++.      +.+ ..+++....|.++++++|+...  +            ..++++++|++|+ .
T Consensus       189 ~i~~~~P~villDE~~~~------e~~-~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~  260 (270)
T TIGR02858       189 LIRSMSPDVIVVDEIGRE------EDV-EALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-G  260 (270)
T ss_pred             HHHhCCCCEEEEeCCCcH------HHH-HHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-C
Confidence            334479999999999742      112 2333334468999999997654  3            2369999999876 4


Q ss_pred             cCccccc
Q psy1506          78 SGWVEEI   84 (85)
Q Consensus        78 ~g~~~~~   84 (85)
                      .|.++++
T Consensus       261 ~g~~~~i  267 (270)
T TIGR02858       261 PGTVEAV  267 (270)
T ss_pred             CCceeec
Confidence            5777665

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.69  E-value=2.9e-08  Score=63.47  Aligned_cols=41  Identities=5%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             chhHHHHHHHHhcCCCEEEEecCC-----CCCCHHHHHHHHHHHHh
Q psy1506           4 KSSCQLCFEAVYKNADIYLLDDPL-----SAVDMHVGKHLFEDCIS   44 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlDEP~-----~~LD~~~~~~i~~~~~~   44 (85)
                      |++++.+||+++.+|+++++||||     ++||+...+.+.+.+.+
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~  202 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA  202 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence            778899999999999999999999     99999988888766543

>PRK13695 putative NTPase; Provisional

Probab=98.63  E-value=5.1e-08  Score=60.76  Aligned_cols=72  Identities=13%  Similarity=0.048  Sum_probs=50.1

Q ss_pred             CchhHHHHHHHHhcCCCEEEEec--CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDE--P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      +.+-+..+++....+|+++++||  |+.++|....    +.+......+.++++++|+......++++..+.+|++..
T Consensus        82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~----~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~  155 (174)
T PRK13695         82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFV----KAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYE  155 (174)
T ss_pred             HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH----HHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEE
Confidence            44556666777778999999999  5555555432    222222345789999999854445689999999988764

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.61  E-value=1.6e-07  Score=70.65  Aligned_cols=65  Identities=11%  Similarity=0.031  Sum_probs=50.8

Q ss_pred             HHhcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecCcchh----------hhCCeEEEEcCceee
Q psy1506          13 AVYKNADIYLLDDPLSAV-DMHVGKHLFEDCISGFLKDKTRILVTHQLQYL----------NHVDQIVFLNNVSKT   77 (85)
Q Consensus        13 al~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~----------~~~d~v~~l~~g~i~   77 (85)
                      .+..+|+++++|||+.+| |+...+.+.+.+....+.|.+++++||+++.+          ..|+..++|.+|++.
T Consensus       648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~  723 (818)
T PRK13830        648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR  723 (818)
T ss_pred             hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence            346899999999999999 68777766655444444688999999998765          358999999888753

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.59  E-value=3.7e-08  Score=65.15  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=58.7

Q ss_pred             CCCc--------hhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH-HHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEE
Q psy1506           1 MTGK--------SSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKH-LFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVF   70 (85)
Q Consensus         1 ~~g~--------~~~~~laral~~~p~illlDEP~~~LD~~~~~~-i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~   70 (85)
                      |+|+        +|++++||++.++++|.+|  ||+.+|..+... +.   ..... .+.|.|+++|++......+.|.+
T Consensus       131 sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i---~~~~~~~~~~~ivls~~la~~~~~paI~v  205 (249)
T cd01128         131 SGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI---FEEFKGTGNMELVLDRRLAERRIFPAIDI  205 (249)
T ss_pred             CCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH---HHHHhcCCCcEEEEchHHhhCCCCCeEEE
Confidence            6799        9999999999999999999  999999543332 32   22233 56799999999999999999999


Q ss_pred             EcCceee
Q psy1506          71 LNNVSKT   77 (85)
Q Consensus        71 l~~g~i~   77 (85)
                      |++|.+.
T Consensus       206 l~s~sr~  212 (249)
T cd01128         206 LKSGTRK  212 (249)
T ss_pred             cCCCCcc
Confidence            9998763

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.58  E-value=2e-07  Score=60.59  Aligned_cols=58  Identities=14%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchhh
Q psy1506           6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYLN   63 (85)
Q Consensus         6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~~   63 (85)
                      ++++-......+|.++++|||++|.++.....+...+++.+.+  +.+++++||+.+...
T Consensus        98 ~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~  157 (218)
T cd03286          98 SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD  157 (218)
T ss_pred             HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence            3444344445789999999999999999888887765555443  789999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.56  E-value=6.6e-07  Score=57.56  Aligned_cols=76  Identities=18%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i~   77 (85)
                      |||..=--.+.+.+ ++.-+++||||-++|.|.-+-.++..+-.....|.-+|++||.+-.+.. ..+|+.++.+.+.
T Consensus       131 SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~  207 (233)
T COG3910         131 SHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE  207 (233)
T ss_pred             ccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence            45655444455555 6778999999999999986666665543444568899999999877665 4688888766443

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.41  E-value=6.2e-07  Score=50.83  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHH
Q psy1506          17 NADIYLLDDPLSAVDMHVGKHLFEDC   42 (85)
Q Consensus        17 ~p~illlDEP~~~LD~~~~~~i~~~~   42 (85)
                      .|++++|||||+++|+.+.+.++..+
T Consensus        63 ~~~~l~lDEaF~~lD~~~~~~~~~~l   88 (90)
T PF13558_consen   63 SPRLLFLDEAFSKLDEENIERLMDLL   88 (90)
T ss_dssp             TBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            37899999999999999888877543

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.40  E-value=1.2e-06  Score=57.06  Aligned_cols=57  Identities=16%  Similarity=0.091  Sum_probs=39.8

Q ss_pred             hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEecCcchh
Q psy1506           6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-DKTRILVTHQLQYL   62 (85)
Q Consensus         6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH~~~~~   62 (85)
                      +++.-...-+.++.++|+|||.+|.|+.....+...+++.+. . +.++|++||+.+..
T Consensus        99 ~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~  157 (222)
T cd03287          99 SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG  157 (222)
T ss_pred             HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence            444444444578999999999999887666555444444433 3 67999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.36  E-value=9.2e-07  Score=68.61  Aligned_cols=67  Identities=21%  Similarity=0.224  Sum_probs=55.8

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI   68 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v   68 (85)
                      |||+|+-.++|.-|+    +.+|+++|||--++||..+...+... +....++.-.|+|||+...+..+|+.
T Consensus      1068 SGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~-i~e~s~~sQFIvIThr~~~m~~ad~l 1138 (1163)
T COG1196        1068 SGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARL-IKEMSKETQFIVITHRKGTMEAADRL 1138 (1163)
T ss_pred             CCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHH-HHHhCcCCeEEEEEcChHHHHHHHHH
Confidence            799999999887765    78899999999999999998888755 55556778899999998887766553

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.28  E-value=2.7e-06  Score=64.37  Aligned_cols=53  Identities=11%  Similarity=-0.010  Sum_probs=41.6

Q ss_pred             HHHHHhcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506          10 CFEAVYKNADIYLLDDPLSAV-DMHVGKHLFEDCISGFLKDKTRILVTHQLQYL   62 (85)
Q Consensus        10 laral~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~   62 (85)
                      +++++..+|+++++|||+.+| |+...+.+.+.+....+.|.+++++||+++.+
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~  733 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA  733 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            567888999999999999999 67766666554433334578999999998765

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.26  E-value=5.8e-06  Score=59.98  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=59.1

Q ss_pred             CCCchhHHHHHHHHh--c--CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVY--K--NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~--~--~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |||..+|++||.-.+  .  +.+.++|||--+|+--.++..+-+. ++...+..-|++|||.+.....+|.-+.+.+
T Consensus       433 SGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~-L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K  508 (557)
T COG0497         433 SGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKK-LRRLSEHHQVLCVTHLPQVAAMADTHFLVEK  508 (557)
T ss_pred             chhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHH-HHHHhcCceEEEEecHHHHHhhhcceEEEEE
Confidence            799999999987644  2  2569999999999999988888765 4556777899999999999888877776654

>KOG0964|consensus

Probab=98.21  E-value=8.6e-07  Score=67.21  Aligned_cols=70  Identities=19%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      ||||++.++||..++    -.+++++|||.-++||+..+..+... +.......-.|.+|-+++.+..+|+++-.
T Consensus      1099 SGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~l-IkelS~~aQFI~TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1099 SGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADL-IKELSDSAQFITTTFRPELLSVADKFYGV 1172 (1200)
T ss_pred             cCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHH-HHHHhhccceEeecccHHHHHHHHhhhce
Confidence            799999999988876    34579999999999999988888654 55566566788888899888888877544

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.14  E-value=2e-05  Score=51.16  Aligned_cols=70  Identities=11%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             CchhHHHHHHHHhc--CCCEEEEecCCCCC---CHHHHHHHHHHHHhhhcCCcEEEEEecCcch-------hhh-CCeEE
Q psy1506           3 GKSSCQLCFEAVYK--NADIYLLDDPLSAV---DMHVGKHLFEDCISGFLKDKTRILVTHQLQY-------LNH-VDQIV   69 (85)
Q Consensus         3 g~~~~~~laral~~--~p~illlDEP~~~L---D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~-------~~~-~d~v~   69 (85)
                      ++.+.+...+.++.  +|+++++|||++.+   |......++..+.....++.|+++++|....       +.. +|-++
T Consensus       104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI  183 (234)
T PRK06067        104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYL  183 (234)
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEE
Confidence            45677788888886  99999999999654   4433334333332223457899999997543       232 57777


Q ss_pred             EEc
Q psy1506          70 FLN   72 (85)
Q Consensus        70 ~l~   72 (85)
                      .|+
T Consensus       184 ~L~  186 (234)
T PRK06067        184 KLR  186 (234)
T ss_pred             EEE
Confidence            776

>PF13175 AAA_15: AAA ATPase domain

Probab=98.07  E-value=2.3e-05  Score=53.85  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=44.2

Q ss_pred             CCCchhHHHHHHHHh------cC-CC---EEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506           1 MTGKSSCQLCFEAVY------KN-AD---IYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQY   61 (85)
Q Consensus         1 ~~g~~~~~~laral~------~~-p~---illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~   61 (85)
                      ++|-++.+.++..+.      .+ +.   ++++|||-+.|.|..++.++..+..... .+..+|++||.+..
T Consensus       343 g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  343 GSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             CcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            467776666655542      22 22   9999999999999988888766544433 37899999998754

>KOG0933|consensus

Probab=98.05  E-value=4.9e-06  Score=63.38  Aligned_cols=67  Identities=19%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI   68 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v   68 (85)
                      ||||||-|+|+..|.    +.+++|||||.-++||.+..+.+-.. ++....+.-.|+||=--..+.+++.+
T Consensus      1084 SGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~m-IkthF~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1084 SGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRM-IKTHFTHSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred             cCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHH-HHhhCCCCeEEEEEchhhccccchhh
Confidence            799999998765543    78899999999999999988888765 45555667788888665556666543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.01  E-value=1.7e-05  Score=58.51  Aligned_cols=57  Identities=12%  Similarity=0.177  Sum_probs=39.5

Q ss_pred             CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506           1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus         1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      |+|++|-+++|-.+.      .+.++ ++|||++.||+..+..+...++...  ..-||+.||+-+
T Consensus       553 S~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e  615 (650)
T TIGR03185       553 SAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEE  615 (650)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHh
Confidence            789999876655433      34556 5699999999987777765444332  457888888754

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0962|consensus

Probab=97.98  E-value=1.3e-05  Score=62.48  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH---Hhhhc--CCcEEEEEecCcchhh------hCCeEEEEc
Q psy1506           7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDC---ISGFL--KDKTRILVTHQLQYLN------HVDQIVFLN   72 (85)
Q Consensus         7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~---~~~~~--~~~tvi~vtH~~~~~~------~~d~v~~l~   72 (85)
                      |+++|-.+..++.+|-|||||.+||..+...+...+   +...+  .+.-.|++|||-.++.      ++++++.+.
T Consensus      1197 RLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~ 1273 (1294)
T KOG0962|consen 1197 RLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVK 1273 (1294)
T ss_pred             HHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeec
Confidence            788999999999999999999999999877666543   22222  3568999999987643      245676665

>PF13166 AAA_13: AAA domain

Probab=97.85  E-value=6.5e-05  Score=55.55  Aligned_cols=62  Identities=21%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             CCCchhHHHHHHHHh--c-------CCCEEEEecCCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEecCcchh
Q psy1506           1 MTGKSSCQLCFEAVY--K-------NADIYLLDDPLSAVDMHVGKHLFEDCISGF--LKDKTRILVTHQLQYL   62 (85)
Q Consensus         1 ~~g~~~~~~laral~--~-------~p~illlDEP~~~LD~~~~~~i~~~~~~~~--~~~~tvi~vtH~~~~~   62 (85)
                      |.|.+..++||-=|.  .       +..++++|.|.|+||......+...+....  .+.+-||+-||+..++
T Consensus       502 SEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~  574 (712)
T PF13166_consen  502 SEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF  574 (712)
T ss_pred             CHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence            568888888774332  3       567999999999999998888887766554  4567899999998764

>COG4637 Predicted ATPase [General function prediction only]

Probab=97.84  E-value=0.00015  Score=49.97  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             CCCchhHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh--CCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY--KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH--VDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~--~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~   72 (85)
                      |-|++.=++++-+|.  +.|.++++|||-.+|-|..-..+... .....+..-|+++||....+..  ...++++.
T Consensus       272 SDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~-~~sAak~sQv~VsTHS~rLl~~~e~~~v~~~~  346 (373)
T COG4637         272 SDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAEL-MRSAAKRSQVIVSTHSPRLLNAVEEHSVFWLD  346 (373)
T ss_pred             cccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHH-HHHhhccceEEEEeCCHHHHhhccccceEEec
Confidence            568899999999988  56889999999999999866655544 3444444489999999887654  34555554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.80  E-value=0.0001  Score=48.15  Aligned_cols=56  Identities=16%  Similarity=0.092  Sum_probs=34.9

Q ss_pred             cCCCEEEEecCCCCC----CHHHHHHHHHHHHhhhcCCcEEEEEecCcch--------hhh-CCeEEEEc
Q psy1506          16 KNADIYLLDDPLSAV----DMHVGKHLFEDCISGFLKDKTRILVTHQLQY--------LNH-VDQIVFLN   72 (85)
Q Consensus        16 ~~p~illlDEP~~~L----D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--------~~~-~d~v~~l~   72 (85)
                      .+|+++++|||++++    |+...+.+.+.+......|.|++++ |+...        ..+ +|-++.|+
T Consensus       116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccccccccceeEEEeeeEEEEEE
Confidence            369999999999999    7665566655433233446666554 54332        122 46677665

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=97.75  E-value=6.9e-05  Score=56.58  Aligned_cols=49  Identities=18%  Similarity=0.094  Sum_probs=35.9

Q ss_pred             HHhcCCCEEEEecCCCCCC-HHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506          13 AVYKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQY   61 (85)
Q Consensus        13 al~~~p~illlDEP~~~LD-~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~   61 (85)
                      .+-.+|+++++|||+..|| +...+.+.+.+....+.|.+++++||+++.
T Consensus       631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  680 (811)
T PRK13873        631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD  680 (811)
T ss_pred             HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            3457899999999999999 555555544433333457899999998764

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.75  E-value=3.6e-05  Score=50.20  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             HhcCCCEEEEecCCCC------CCHHHHHHHHHHHHhhhc-CCcEEEEEecCc
Q psy1506          14 VYKNADIYLLDDPLSA------VDMHVGKHLFEDCISGFL-KDKTRILVTHQL   59 (85)
Q Consensus        14 l~~~p~illlDEP~~~------LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~   59 (85)
                      ...+|+++++| |+++      .|+.....++..+..... .+.++++++|..
T Consensus       108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            35799999999 7764      588766667665544333 388999999975

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.68  E-value=0.00018  Score=43.04  Aligned_cols=55  Identities=13%  Similarity=0.036  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhcCCCEEEEecCCCCCCH----------HHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506           6 SCQLCFEAVYKNADIYLLDDPLSAVDM----------HVGKHLFEDCISGFL-KDKTRILVTHQLQY   61 (85)
Q Consensus         6 ~~~~laral~~~p~illlDEP~~~LD~----------~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~   61 (85)
                      .++..+++...+|+++++|||++-++.          ...+.+ ..+..... .+.++++++|....
T Consensus        74 ~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~vv~~~~~~~~  139 (165)
T cd01120          74 LSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL-RELLERARKGGVTVIFTLQVPSG  139 (165)
T ss_pred             HHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhcCCceEEEEEecCCc
Confidence            345678888899999999999965443          323333 34444443 47899999997643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=97.57  E-value=0.00034  Score=48.73  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=51.7

Q ss_pred             CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h---CCe
Q psy1506           1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H---VDQ   67 (85)
Q Consensus         1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~---~d~   67 (85)
                      |+||.+-+++|.-|+         .+++||+|||-+|-||..-+..++..    ...+.-+++++-+.+.+. .   ..+
T Consensus       277 S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~----~~~~~Q~fvT~t~~~~~~~~~~~~~~  352 (363)
T COG1195         277 SQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT----IELGVQVFVTTTDLEDIDDNLDENAQ  352 (363)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh----cccCCeEEEEccCHHHhhhhhhccce
Confidence            799999888876655         78899999999999999755554432    233556677666655443 2   347


Q ss_pred             EEEEcCceee
Q psy1506          68 IVFLNNVSKT   77 (85)
Q Consensus        68 v~~l~~g~i~   77 (85)
                      ++..++|.+.
T Consensus       353 ~f~V~~g~i~  362 (363)
T COG1195         353 MFHVEDGKIT  362 (363)
T ss_pred             EEEEecceec
Confidence            8888888763

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=97.54  E-value=0.00027  Score=53.39  Aligned_cols=49  Identities=10%  Similarity=0.058  Sum_probs=37.0

Q ss_pred             HHhcCCCEEEEecCCCCCC-HHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506          13 AVYKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFLKDKTRILVTHQLQY   61 (85)
Q Consensus        13 al~~~p~illlDEP~~~LD-~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~   61 (85)
                      .+..+|.++++|||...|| +...+.+.+.+....+.|..++++||+++.
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            4567899999999999999 666656654443333457899999999755

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.46  E-value=0.00024  Score=45.29  Aligned_cols=56  Identities=13%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      ++++++..+|+++++|||.   |++.....    ++....|..++.+.|..+.....+|++.+
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l  121 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence            5778899999999999996   66543322    33344688899999988765556666554

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00152 dephospho-CoA kinase

Probab=97.27  E-value=0.00029  Score=44.31  Aligned_cols=71  Identities=11%  Similarity=0.020  Sum_probs=55.0

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch--h-hhCCeEEEEcCc
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY--L-NHVDQIVFLNNV   74 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~-~~~d~v~~l~~g   74 (85)
                      -|+-+|..||.++..+|+.+..+|  +.+||...+.+.+.+.....++.++++.+|.+..  + ..||.+++++.+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            388899999999999999887776  7899998888776543333345688999997743  3 468999998754

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.20  E-value=0.00025  Score=48.12  Aligned_cols=69  Identities=14%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCc-EEEEEecCcchhhhCCeEEEEcCceeec-Ccccc
Q psy1506           7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDK-TRILVTHQLQYLNHVDQIVFLNNVSKTS-GWVEE   83 (85)
Q Consensus         7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~-tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g~~~~   83 (85)
                      .-.+..+|..+|+++++|||.+   .+    .+. +++....|. +++.+.|..+.....+|+..|..|.... |.+.+
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~  278 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG---DE----AFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFA  278 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC---HH----HHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHH
Confidence            3467778999999999999996   22    222 233334454 5688999887655578877776665442 44443

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=97.14  E-value=0.0013  Score=50.30  Aligned_cols=56  Identities=14%  Similarity=0.081  Sum_probs=37.4

Q ss_pred             hHHHHHHHHhc--CCCEEEEecC---CCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEecCcchhhh
Q psy1506           6 SCQLCFEAVYK--NADIYLLDDP---LSAVDMHVGKHLFEDCISGFL-K-DKTRILVTHQLQYLNH   64 (85)
Q Consensus         6 ~~~~laral~~--~p~illlDEP---~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH~~~~~~~   64 (85)
                      -...++..+-.  ++.++|+|||   |+.+|..   .+...+++.+. . +.+++++||..+....
T Consensus       673 E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~---aia~aile~l~~~~~~~~l~aTH~~el~~l  735 (854)
T PRK05399        673 EMTETANILNNATERSLVLLDEIGRGTSTYDGL---SIAWAVAEYLHDKIGAKTLFATHYHELTEL  735 (854)
T ss_pred             HHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH---HHHHHHHHHHHhcCCceEEEEechHHHHHH
Confidence            34556666654  8899999999   7778753   33344444443 3 5789999998654333

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.04  E-value=0.0059  Score=43.66  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCC-----CHHHHHHH----------HHHHHhhhc-CCcEEEEEecCc-chhh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAV-----DMHVGKHL----------FEDCISGFL-KDKTRILVTHQL-QYLN   63 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~L-----D~~~~~~i----------~~~~~~~~~-~~~tvi~vtH~~-~~~~   63 (85)
                      ||=.+|-..|..|+-..+++||+||-|++-     |...++-+          ...+...+. .|.+.|+|.-.. .++.
T Consensus       324 SGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~  403 (448)
T PF09818_consen  324 SGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFD  403 (448)
T ss_pred             CchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHh
Confidence            455689999999999999999999999986     44322222          111112222 366666665544 4578


Q ss_pred             hCCeEEEEcCc
Q psy1506          64 HVDQIVFLNNV   74 (85)
Q Consensus        64 ~~d~v~~l~~g   74 (85)
                      .+|+|+.|++=
T Consensus       404 vAD~Vi~Md~Y  414 (448)
T PF09818_consen  404 VADRVIMMDEY  414 (448)
T ss_pred             hCCEEEEecCc
Confidence            89999999874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.01  E-value=0.0016  Score=44.77  Aligned_cols=41  Identities=15%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506          21 YLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL   62 (85)
Q Consensus        21 lllDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~   62 (85)
                      +++|||+.++|+..+..+++. ++...++.++|++||+++.+
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~-LEep~~~~~~Ilvth~~~~l  156 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKV-LEEPPPQVVFLLVSHAADKV  156 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHH-HHhCcCCCEEEEEeCChHhC
Confidence            456899999999988888765 44444578899999998753

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=96.92  E-value=0.0049  Score=44.04  Aligned_cols=54  Identities=9%  Similarity=-0.091  Sum_probs=40.0

Q ss_pred             cC--CCCCCHHHHHHHHHHHHhhhc---CCc-----EEEEEecCcchhhhCCeEEEEcCceeec-Cc
Q psy1506          25 DP--LSAVDMHVGKHLFEDCISGFL---KDK-----TRILVTHQLQYLNHVDQIVFLNNVSKTS-GW   80 (85)
Q Consensus        25 EP--~~~LD~~~~~~i~~~~~~~~~---~~~-----tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g~   80 (85)
                      ||  ++|+|+.....+.+. ++...   +|.     ||++.+|+++. ..||++..+.+|++.. +.
T Consensus       273 e~P~~~G~dp~~~~~l~~l-ler~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~  337 (438)
T PRK07721        273 EPPTTKGYTPSVFAILPKL-LERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQ  337 (438)
T ss_pred             CCCccccCCHHHHHHHHHH-HHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEecc
Confidence            64  679999877666544 33333   464     89999999985 6789999999998864 44

>PF00488 MutS_V: MutS domain V C-terminus

Probab=96.90  E-value=0.0073  Score=39.68  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=35.7

Q ss_pred             hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh
Q psy1506          15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL   62 (85)
Q Consensus        15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~   62 (85)
                      ..+..++|+||+..|=++.....+...+++.+.+  +..++++||..+..
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~  169 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA  169 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence            3566699999999999999888887777766542  67899999987653

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.71  E-value=0.00089  Score=48.07  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhh-hcCCcEEEEEecCcch--------h-hh-CCeEEEEc
Q psy1506          34 VGKHLFEDCISG-FLKDKTRILVTHQLQY--------L-NH-VDQIVFLN   72 (85)
Q Consensus        34 ~~~~i~~~~~~~-~~~~~tvi~vtH~~~~--------~-~~-~d~v~~l~   72 (85)
                      .++.++.. +.. ...|.|+++++|+.+.        + .+ +|.|+.|+
T Consensus       142 ~r~~l~~L-i~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       142 VRREIFRL-VARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHHH-HHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            34555443 343 3458999999997643        1 33 68888886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF13514 AAA_27: AAA domain

Probab=96.33  E-value=0.019  Score=45.07  Aligned_cols=56  Identities=14%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             HHHHHHHH-hcCCCE-EEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh
Q psy1506           7 CQLCFEAV-YKNADI-YLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN   63 (85)
Q Consensus         7 ~~~laral-~~~p~i-lllDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~   63 (85)
                      |++++..+ -.+.++ +|+|++|.+.|..-....+.. +....+..-||+-||+.+.+.
T Consensus      1039 RLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~-L~~ls~~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1039 RLALAELLAEQGEPLPFILDDIFVNFDDERARAALEL-LAELSRRRQVIYFTCHEHLVE 1096 (1111)
T ss_pred             HHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHH-HHHhccCCeEEEEeccHHHHH
Confidence            67777777 344444 999999999999877777655 455555567777777766544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.32  E-value=0.035  Score=31.59  Aligned_cols=55  Identities=22%  Similarity=0.064  Sum_probs=37.1

Q ss_pred             chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH------HHHhhhcCCcEEEEEecC
Q psy1506           4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFE------DCISGFLKDKTRILVTHQ   58 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~------~~~~~~~~~~tvi~vtH~   58 (85)
                      +..+..+.++-..+|.++++||+..-.+.........      ........+..+|.++|.
T Consensus        65 ~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       65 LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            4456667777777789999999999999875554432      111223346788888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.30  E-value=0.0086  Score=41.28  Aligned_cols=54  Identities=11%  Similarity=0.119  Sum_probs=37.8

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE
Q psy1506           8 QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI   68 (85)
Q Consensus         8 ~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v   68 (85)
                      -++.++|..+|+++++||+.   |+++....+    +....|.+++.+.|..+.....+|+
T Consensus       186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l----~aa~tGh~v~~T~Ha~~~~~~~~Rl  239 (343)
T TIGR01420       186 NALRAALREDPDVILIGEMR---DLETVELAL----TAAETGHLVFGTLHTNSAAQTIERI  239 (343)
T ss_pred             HHHHHhhccCCCEEEEeCCC---CHHHHHHHH----HHHHcCCcEEEEEcCCCHHHHHHHH
Confidence            35778899999999999997   777554333    2345688889999976544333443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=96.02  E-value=0.0093  Score=42.60  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=46.8

Q ss_pred             CCCchhHHHHHHHHh-------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY-------KNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~-------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      +.|++.|+..+.+.+       .++-++++|+||...|+.  +++- ...... ..|.+..+.+|....+..+.+   .+
T Consensus       223 s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~~G~~~~~~s~l~~L~ERag~---~~  296 (432)
T PRK06793        223 SHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPIGGKTLLMESYMKKLLERSGK---TQ  296 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCCCCeeeeeeccchhHHHHhcc---CC
Confidence            357788888877766       788999999999999985  4443 223222 247788887884444544433   25


Q ss_pred             Cceee
Q psy1506          73 NVSKT   77 (85)
Q Consensus        73 ~g~i~   77 (85)
                      +|.+.
T Consensus       297 ~GSiT  301 (432)
T PRK06793        297 KGSIT  301 (432)
T ss_pred             CcceE
Confidence            66553

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=95.88  E-value=0.048  Score=39.25  Aligned_cols=74  Identities=22%  Similarity=0.235  Sum_probs=51.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH----------H---Hhhhc-CCcEEEEEecCcch-hhhC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFED----------C---ISGFL-KDKTRILVTHQLQY-LNHV   65 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~----------~---~~~~~-~~~tvi~vtH~~~~-~~~~   65 (85)
                      ||-+++-..|=+++-...+++++||-+++...-... ++..          +   +.... .+.++|.|+-.... +..+
T Consensus       322 SGStsmAa~IQeaiEagak~lliDED~sAtNllvrd-Vlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~a  400 (554)
T COG3044         322 SGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD-VLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVA  400 (554)
T ss_pred             CchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh-HHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhc
Confidence            566788889999999999999999999987542211 1111          1   11121 23788888887765 5678


Q ss_pred             CeEEEEcCce
Q psy1506          66 DQIVFLNNVS   75 (85)
Q Consensus        66 d~v~~l~~g~   75 (85)
                      ||+++|++.+
T Consensus       401 DRaIvMeDhr  410 (554)
T COG3044         401 DRAIVMEDHR  410 (554)
T ss_pred             ceEEEecccC
Confidence            9999998754

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=95.82  E-value=0.03  Score=43.02  Aligned_cols=47  Identities=13%  Similarity=0.072  Sum_probs=33.7

Q ss_pred             hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecCcch
Q psy1506          15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQLQY   61 (85)
Q Consensus        15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~~~~   61 (85)
                      +.++.++|+||+-.|-|+.....+...+++.+.  .+..++++||..+.
T Consensus       669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL  717 (840)
T TIGR01070       669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFEL  717 (840)
T ss_pred             CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHH
Confidence            467889999999777776666665555554433  46789999998654

>KOG0996|consensus

Probab=95.79  E-value=0.012  Score=46.31  Aligned_cols=71  Identities=14%  Similarity=0.178  Sum_probs=52.6

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |||.|=--+||..++    +..++|+|||.-++||..+.--+ ...++...++.-.|+||=+-+.+..+++.+-+.
T Consensus      1197 SGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIV-anYIkErTkNAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1197 SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIV-ANYIKERTKNAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred             CcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhH-HHHHHHhccCCeEEEEEehhhHHHHHhhheeeE
Confidence            688887666666654    67889999999999999876544 445666566778888887777666677665544

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.071  Score=39.58  Aligned_cols=44  Identities=20%  Similarity=0.257  Sum_probs=34.9

Q ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506          19 DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL   62 (85)
Q Consensus        19 ~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~   62 (85)
                      +++++|.|.+++|.......+..+.....+++-+|+.||+..++
T Consensus       557 kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~  600 (758)
T COG4694         557 KVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFY  600 (758)
T ss_pred             eeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceeh
Confidence            57899999999999876666655555556788999999996554

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=95.58  E-value=0.076  Score=33.13  Aligned_cols=64  Identities=11%  Similarity=0.107  Sum_probs=43.7

Q ss_pred             HHHHHHh--cCCCEEEEecCCCCCCH--HHHHHHHHHHHhhhcCCcEEEEEecCcch--hhhCCeEEEEcC
Q psy1506           9 LCFEAVY--KNADIYLLDDPLSAVDM--HVGKHLFEDCISGFLKDKTRILVTHQLQY--LNHVDQIVFLNN   73 (85)
Q Consensus         9 ~laral~--~~p~illlDEP~~~LD~--~~~~~i~~~~~~~~~~~~tvi~vtH~~~~--~~~~d~v~~l~~   73 (85)
                      ..|+..+  .+.++++|||-..+++.  -..+.+++ +++...++..+|++.++...  +..+|.|..|+.
T Consensus        85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~-ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~  154 (159)
T cd00561          85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVD-LLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE  154 (159)
T ss_pred             HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHH-HHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence            3444444  46799999999888533  23455654 34444457799999998743  467999988865

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=95.55  E-value=0.05  Score=38.84  Aligned_cols=48  Identities=23%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             cCCCEEEEecCCCCCCHH-HHHHHHHHHHhhhcCCcEEEEEe-cCcchhh
Q psy1506          16 KNADIYLLDDPLSAVDMH-VGKHLFEDCISGFLKDKTRILVT-HQLQYLN   63 (85)
Q Consensus        16 ~~p~illlDEP~~~LD~~-~~~~i~~~~~~~~~~~~tvi~vt-H~~~~~~   63 (85)
                      .++++|++|||...++.. ..+.++..+-....+++.+|+++ |++..+.
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~  242 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS  242 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence            379999999999888754 33456554333344566777766 5666554

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=95.16  E-value=0.094  Score=33.37  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             HHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCc
Q psy1506           9 LCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNV   74 (85)
Q Consensus         9 ~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g   74 (85)
                      ..|+..+  .+.++++|||-..+++..  ..+.+.+ +++...++..+|++-++.. . +..+|.|..|+.+
T Consensus       105 ~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~-~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~  175 (178)
T PRK07414        105 QYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLE-FLEKRPSHVDVILTGPEMPESLLAIADQITELRRS  175 (178)
T ss_pred             HHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHH-HHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence            4455555  457899999999988543  2344543 3444445678999999864 3 4679999988764

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.04  E-value=0.093  Score=33.71  Aligned_cols=55  Identities=24%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             cCCCEEEEecCCCCC------CHHHHHHHHHHHHhhh-cCCcEEEEEecCc---------chhh-hCCeEEEEc
Q psy1506          16 KNADIYLLDDPLSAV------DMHVGKHLFEDCISGF-LKDKTRILVTHQL---------QYLN-HVDQIVFLN   72 (85)
Q Consensus        16 ~~p~illlDEP~~~L------D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~---------~~~~-~~d~v~~l~   72 (85)
                      .+++.+++| +.+.+      |...++.+. .+.+.. ..+.|+++++|..         ..+. .||.+++|+
T Consensus       106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~-~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       106 LGASRVVID-PISLLETLFDDDAERRTELF-RFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hCCCEEEEc-ChHHHhhhcCCHHHHHHHHH-HHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            368899999 44433      333334343 344443 4588999999942         2233 379999886

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=95.02  E-value=0.084  Score=39.13  Aligned_cols=55  Identities=24%  Similarity=0.391  Sum_probs=39.6

Q ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh--CCeEEEEc
Q psy1506          17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH--VDQIVFLN   72 (85)
Q Consensus        17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~   72 (85)
                      .|.++|.+||-+.|-|.....++ .+++....+.-+|++||..+.+..  -+.++++.
T Consensus       301 r~~ILLiEEPEahLHPq~q~~l~-~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~lv  357 (581)
T COG3593         301 RPNILLIEEPEAHLHPQLQAVLW-DLLNNLPLGLQRIVTTHSPHLLSLADLDSICRLV  357 (581)
T ss_pred             ccceEEEeCchhhcCHHHHHHHH-HHHhcCCcceEEEEEcCCcccccccCcccEEEEE
Confidence            44599999999999998666444 334433345789999999988754  46666554

>KOG0018|consensus

Probab=94.83  E-value=0.073  Score=41.77  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |||.|=-.+||.-+.    +.+|+++|||.-++||-.+..++...+ .  ..+.-.|+||=-..+...+|-.+-+.
T Consensus      1053 SGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyI-r--~~~~Q~IvISLK~~~y~kadaLVGvy 1125 (1141)
T KOG0018|consen 1053 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYI-R--SSNFQFIVISLKEEFYQKADALVGVY 1125 (1141)
T ss_pred             CccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHH-h--cCCceEEEEeccHHHhhhhhceeeec
Confidence            789998888887766    557899999999999999888886544 3  45667788887777777776655444

>PRK06893 DNA replication initiation factor; Validated

Probab=94.21  E-value=0.13  Score=33.38  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=27.5

Q ss_pred             hcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506          15 YKNADIYLLDDPLSAV-DMHVGKHLFEDCISGF-LKDKTRILVTHQL   59 (85)
Q Consensus        15 ~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~   59 (85)
                      +.+++++++||+..-. |....+.++.. +... .++.+++++|++.
T Consensus        89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l-~n~~~~~~~~illits~~  134 (229)
T PRK06893         89 LEQQDLVCLDDLQAVIGNEEWELAIFDL-FNRIKEQGKTLLLISADC  134 (229)
T ss_pred             cccCCEEEEeChhhhcCChHHHHHHHHH-HHHHHHcCCcEEEEeCCC
Confidence            3578999999998764 44444455543 4433 3466776666543

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=94.02  E-value=0.18  Score=32.38  Aligned_cols=65  Identities=9%  Similarity=0.067  Sum_probs=45.1

Q ss_pred             HHHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcC
Q psy1506           8 QLCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNN   73 (85)
Q Consensus         8 ~~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~   73 (85)
                      ...|+..+  .+.++++|||-+.+++..  ..+.+.+. ++...++..+|++-++.. . +..+|.|..|+.
T Consensus       104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~-L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~  174 (191)
T PRK05986        104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEA-LNARPGMQHVVITGRGAPRELIEAADLVTEMRP  174 (191)
T ss_pred             HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHH-HHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence            45566665  457899999999988643  23455543 444445678999999864 3 467999998875

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=93.99  E-value=0.33  Score=27.81  Aligned_cols=53  Identities=13%  Similarity=-0.062  Sum_probs=32.4

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCcc
Q psy1506           7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LKDKTRILVTHQLQ   60 (85)
Q Consensus         7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~~   60 (85)
                      ......+...++.++++||.... ++.....+...+....     ..+..+|++++...
T Consensus        74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            34455666778999999998876 3333444443332222     24568888888543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=93.68  E-value=0.22  Score=31.48  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             HHHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCc
Q psy1506           8 QLCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNV   74 (85)
Q Consensus         8 ~~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g   74 (85)
                      ...|+..+  .+.++++|||-+.+++..  ..+.+.+. ++...++.-+|++.++.. . +..+|.|..|+.-
T Consensus        86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~l-L~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~v  157 (173)
T TIGR00708        86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEA-LQERPGHQHVIITGRGCPQDLLELADLVTEMRPV  157 (173)
T ss_pred             HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHH-HHhCCCCCEEEEECCCCCHHHHHhCceeeeeccc
Confidence            34555555  567999999999877543  33455543 444445678999999864 3 4679999998753

Alternate name: corrinoid adenosyltransferase.

>PF12846 AAA_10: AAA-like domain

Probab=93.67  E-value=0.15  Score=33.46  Aligned_cols=48  Identities=15%  Similarity=0.158  Sum_probs=33.8

Q ss_pred             cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh
Q psy1506          16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN   63 (85)
Q Consensus        16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~   63 (85)
                      ..|.++++||...-++.......+..+.+..+ .|..++++||++..+.
T Consensus       219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~  267 (304)
T PF12846_consen  219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLP  267 (304)
T ss_pred             CceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHh
Confidence            36779999999888876444444445555544 4889999999876543

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=93.61  E-value=0.16  Score=35.08  Aligned_cols=48  Identities=8%  Similarity=0.068  Sum_probs=36.2

Q ss_pred             HhcCCC-EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506          14 VYKNAD-IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY   61 (85)
Q Consensus        14 l~~~p~-illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~   61 (85)
                      +..+|+ ++|..+|-+.|-|+.+-.+.+.+......|.-+++.||.-..
T Consensus       256 li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhi  304 (374)
T COG4938         256 LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHI  304 (374)
T ss_pred             eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHH
Confidence            334444 889999999999998777776555555679999999996433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=93.25  E-value=0.58  Score=33.17  Aligned_cols=53  Identities=17%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             HHHHHHhcCCCEEEEec----------CCCCCCHHHHHHHHHHHHhhhc-----CCcEEEEEecCcchh
Q psy1506           9 LCFEAVYKNADIYLLDD----------PLSAVDMHVGKHLFEDCISGFL-----KDKTRILVTHQLQYL   62 (85)
Q Consensus         9 ~laral~~~p~illlDE----------P~~~LD~~~~~~i~~~~~~~~~-----~~~tvi~vtH~~~~~   62 (85)
                      .+..|....|.++++||          +.++.|....+.+. .++....     .+..+|++||+++.+
T Consensus       230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~-~LL~~ld~~~~~~~v~VI~aTN~~d~L  297 (398)
T PTZ00454        230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILL-ELLNQMDGFDQTTNVKVIMATNRADTL  297 (398)
T ss_pred             HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHH-HHHHHhhccCCCCCEEEEEecCCchhC
Confidence            34556668899999999          34556665444343 3343321     245788899977654

>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family

Probab=93.06  E-value=0.21  Score=37.68  Aligned_cols=46  Identities=9%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             hcCCCEEEEecCCCCCC-HHHHHHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506          15 YKNADIYLLDDPLSAVD-MHVGKHLFEDCISGFL-KDKTRILVTHQLQY   61 (85)
Q Consensus        15 ~~~p~illlDEP~~~LD-~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~   61 (85)
                      -..|.++++||+..-++ +...+ .+..+.+..+ .|..++++||++..
T Consensus       627 ~~~~~~i~iDEa~~ll~~~~~~~-~i~~~~r~~RK~~~~~~~~TQ~~~d  674 (785)
T TIGR00929       627 DGRPFLIIIDEAWQYLGNPVFAA-KIRDWLKTLRKANGIVVLATQSIND  674 (785)
T ss_pred             CCCCeEEEEechhhhcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            45788999999998886 54444 4445555444 58899999998764

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=92.73  E-value=0.51  Score=33.89  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             HHHHhcCCCEEEEecCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506          11 FEAVYKNADIYLLDDPL-SAVDMHVGKHLFEDCISGFLKDKTRILVTHQL   59 (85)
Q Consensus        11 aral~~~p~illlDEP~-~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~   59 (85)
                      .+.-+.++++|++||.- -+.+....+.++..+-.....++.+|++++..
T Consensus       200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~  249 (450)
T PRK14087        200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS  249 (450)
T ss_pred             HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence            44456889999999994 34456656666654333344567788888754

>PRK04296 thymidine kinase; Provisional

Probab=92.69  E-value=1.6  Score=27.51  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=34.6

Q ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecC---------c--chhhhCCeEEEEcC
Q psy1506          17 NADIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQ---------L--QYLNHVDQIVFLNN   73 (85)
Q Consensus        17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~---------~--~~~~~~d~v~~l~~   73 (85)
                      +++++++||. .-++.+   .+.+ +++. ...|.+++++.++         .  ..+..+|.|..|+.
T Consensus        78 ~~dvviIDEa-q~l~~~---~v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~  141 (190)
T PRK04296         78 KIDCVLIDEA-QFLDKE---QVVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA  141 (190)
T ss_pred             CCCEEEEEcc-ccCCHH---HHHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence            7899999999 335543   2332 3333 3468899999888         2  22356899988864

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=92.30  E-value=0.45  Score=30.51  Aligned_cols=56  Identities=11%  Similarity=0.011  Sum_probs=33.7

Q ss_pred             CCCEEEEecCCCCC--CHHHHHHHHHHHHhhh-cCCcEEEEEecCcc--------hhhh-CCeEEEEc
Q psy1506          17 NADIYLLDDPLSAV--DMHVGKHLFEDCISGF-LKDKTRILVTHQLQ--------YLNH-VDQIVFLN   72 (85)
Q Consensus        17 ~p~illlDEP~~~L--D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~--------~~~~-~d~v~~l~   72 (85)
                      +|+.+++|.++.-+  ++...+.+...+.... ..+.|+++++|...        .+.+ ||.++.|+
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            57788888887653  3332333333333333 35899999999532        1233 68888776

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		2e-18
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		1e-11
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		1e-11
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		1e-11
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		2e-11
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		2e-11
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		2e-11
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		2e-11
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		2e-11
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		4e-11
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		4e-11
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		5e-11
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		5e-11
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		5e-11
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		4e-04

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIV 69
            AVY NADIYL DDPLSAVD HVGKH+FE+ I   G LK+KTRILVTH + YL  VD I+
Sbjct: 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVII 199
Query: 70  FLNN 73
            ++ 
Sbjct: 200 VMSG 203

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 233
Query: 73  NVS 75
             S
Sbjct: 234 EGS 236

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73  NVS 75
             S
Sbjct: 233 EGS 235

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73  NVS 75
             S
Sbjct: 233 EGS 235

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 73  NVS 75
             S
Sbjct: 233 EGS 235

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 233
Query: 73  NVS 75
             S
Sbjct: 234 EGS 236

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 142 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 201
Query: 72  NNVS 75
           +  S
Sbjct: 202 HEGS 205

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 202
Query: 72  NNVS 75
           +  S
Sbjct: 203 HEGS 206

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 156 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 215
Query: 73  NVS 75
             S
Sbjct: 216 EGS 218

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   + +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72  NNVS 75
           +  S
Sbjct: 233 HQGS 236

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   + +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72  NNVS 75
           +  S
Sbjct: 233 HQGS 236

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   + +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72  NNVS 75
           +  S
Sbjct: 233 HQGS 236

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   + +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 231
Query: 72  NNVS 75
           +  S
Sbjct: 232 HQGS 235

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 12  EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL 71
            AVYK+AD+YLLD P   +D+   + +FE C+   + +KTRILVT ++++L   D+I+ L
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 232
Query: 72  NNVS 75
           +  S
Sbjct: 233 HQGS 236

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 17  NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN 73
           N  I +LD+  SA+D+   + + ++ +    KD+T ++V H+L  + H D+IV + N
Sbjct: 495 NPPILILDEATSALDLE-SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 550

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-41
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	6e-41
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	6e-07
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	5e-06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	8e-05
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-04
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	3e-04

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  134 bits (339), Expect = 2e-41
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 203

Query: 73  N 73
            
Sbjct: 204 E 204

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  134 bits (339), Expect = 6e-41
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   K +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232

Query: 73  N 73
            
Sbjct: 233 E 233

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  129 bits (326), Expect = 2e-39
 Identities = 41/63 (65%), Positives = 48/63 (76%), Gaps = 2/63 (3%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GFLKDKTRILVTHQLQYLNHVDQIVF 70
           AVY NADIYL DDPLSAVD HVGKH+FE+ I   G LK+KTRILVTH + YL  VD I+ 
Sbjct: 141 AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIV 200

Query: 71  LNN 73
           ++ 
Sbjct: 201 MSG 203

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 44.2 bits (105), Expect = 6e-07
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 16  KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFLNNV 74
           + AD+Y+ D P S +D+    ++    I   LK+K  I+V H L  L+++ D I  +   
Sbjct: 155 READVYIFDQPSSYLDVRERMNM-AKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213

Query: 75  SKTSGWVEEIL 85
           S   G V +  
Sbjct: 214 SSVYGRVSKSY 224

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 41.4 bits (98), Expect = 5e-06
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ K   + +LDD  S+VD    K + +  +  + K  T  ++T ++      D+I+ L+
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLH 551

Query: 73  N 73
            
Sbjct: 552 E 552

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 16  KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHV-DQIVFLNN 73
           + AD+Y+ D+P S +D+    +  +  I   L   K  I V H L  L+++ D +  +  
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296

Query: 74  VSKTSGWVEEIL 85
           V    G V    
Sbjct: 297 VPSVYGVVTLPA 308

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ +N  I LLD+  SA+D    + + +  +    + +T I++ H+L  + + D I   +
Sbjct: 540 ALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD 598

Query: 73  N 73
            
Sbjct: 599 G 599

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 14/77 (18%)

Query: 17  NADIYLLDDPLSAVDMHVGKHLFE--DCISGFLKD--KTRILVTHQLQYLNHV----DQI 68
              + LLD+P SA+D+    +       +    +    T +  TH     N V    ++ 
Sbjct: 146 ECKLILLDEPTSALDL---ANQDIVLSLLIDLAQSQNMTVVFTTH---QPNQVVAIANKT 199

Query: 69  VFLNNVSKTSGWVEEIL 85
           + LN  +   G    IL
Sbjct: 200 LLLNKQNFKFGETRNIL 216

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTH-QLQYLNHVDQIV 69
           A+    +I  LD+P   VD      +       ++K+  K  ILVTH       + +   
Sbjct: 142 ALASQPEIVGLDEPFENVDAARRHVISR-----YIKEYGKEGILVTHELDMLNLYKEYKA 196

Query: 70  FLNNVSKT--SGWVEEIL 85
           +    ++      V E+L
Sbjct: 197 YFLVGNRLQGPISVSELL 214

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
            + K   I LLD+  SA+D    + + +  ++    ++T I+V H+L  + + DQI+ + 
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262

Query: 73  N 73
           +
Sbjct: 263 D 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.96
1g6h_A	257	High-affinity branched-chain amino acid transport	99.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.96
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.95
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.95
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.95
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.95
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.95
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.94
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.91
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.91
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.91
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.91
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.9
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.89
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.88
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.88
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.87
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.86
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.85
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.83
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.83
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.82
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.81
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.76
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.75
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.75
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.71
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.67
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.65
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.53
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.51
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.38
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.31
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.22
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.22
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.21
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.19
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.14
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.09
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.07
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.01
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.0
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.99
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.93
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.9
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.86
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.85
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.84
2og2_A	359	Putative signal recognition particle receptor; nuc	98.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.82
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.74
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.68
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.6
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.58
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.5
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.49
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.43
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.4
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.31
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.22
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.08
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.07
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.06
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.0
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.96
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.91
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.87
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.8
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.74
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.73
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.68
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.55
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.34
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.2
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.13
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.12
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.96
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.93
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.89
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.88
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.78
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.77
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.52
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.51
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.3
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.99
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.99
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.83
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.56
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.34
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.29
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.29
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.28
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.27
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.25
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.72
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.53
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.31
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.0
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	93.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.93
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	91.18
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	90.45
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	89.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	89.43
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	89.16
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	89.03
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	89.02
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	88.49
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	88.42
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	87.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	86.76
2z43_A	324	DNA repair and recombination protein RADA; archaea	86.34
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	85.79
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	85.31
2qgz_A	308	Helicase loader, putative primosome component; str	85.05
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	85.01
3bos_A	242	Putative DNA replication factor; P-loop containing	83.25
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	83.24
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	81.13
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	80.99
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	80.14

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.96  E-value=9e-30  Score=164.79  Aligned_cols=84  Identities=20%  Similarity=0.244  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+...+ |.|+|++||+++....||++++|++|++.. 
T Consensus       147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~  226 (235)
T 3tif_A          147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE  226 (235)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999999888765544444 899999999998767799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      ++++++
T Consensus       227 ~~~~~~  232 (235)
T 3tif_A          227 EKLRGF  232 (235)
T ss_dssp             EECC--
T ss_pred             cChhhh
Confidence            666553

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.96  E-value=1.2e-29  Score=167.71  Aligned_cols=84  Identities=14%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||||+.+|+++||||||+|||+.+.+.+++.+.+.. .+|.|+|++||+++.+ ..||++++|++|++..
T Consensus       145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~  224 (275)
T 3gfo_A          145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL  224 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            7999999999999999999999999999999999888887654443 3489999999999987 4699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       225 ~g~~~~~  231 (275)
T 3gfo_A          225 QGNPKEV  231 (275)
T ss_dssp             EECHHHH
T ss_pred             ECCHHHH
Confidence             887765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.96  E-value=1.7e-29  Score=169.03  Aligned_cols=83  Identities=23%  Similarity=0.323  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+...+++.+ ....+++|+|+|||+++.+..||+|++|++|++.. |
T Consensus       192 SGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G  270 (306)
T 3nh6_A          192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERG  270 (306)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH-HHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-HHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887654 44556789999999999987799999999999985 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       271 ~~~el  275 (306)
T 3nh6_A          271 RHEAL  275 (306)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.96  E-value=2.1e-29  Score=171.94  Aligned_cols=84  Identities=20%  Similarity=0.197  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||||+.+|++|||||||++||+.+...+++.+.+... .|.|+|+|||+++.+. .||++++|++|++..
T Consensus       165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~  244 (366)
T 3tui_C          165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE  244 (366)
T ss_dssp             CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999999999876554443 4899999999999874 699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       245 ~g~~~ev  251 (366)
T 3tui_C          245 QDTVSEV  251 (366)
T ss_dssp             CCBHHHH
T ss_pred             EcCHHHH
Confidence             877664

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.96  E-value=8.1e-29  Score=161.97  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (257)
T 1g6h_A          155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  234 (257)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999999988876554444689999999999886 5699999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       235 g~~~~  239 (257)
T 1g6h_A          235 GRGEE  239 (257)
T ss_dssp             EESHH
T ss_pred             eCHHH
Confidence            76665

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.96  E-value=5.5e-29  Score=163.28  Aligned_cols=84  Identities=21%  Similarity=0.288  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (262)
T 1b0u_A          155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  234 (262)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999988888765444446899999999999874 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       235 g~~~~~  240 (262)
T 1b0u_A          235 GDPEQV  240 (262)
T ss_dssp             ECHHHH
T ss_pred             CCHHHH
Confidence            766553

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.95  E-value=6.2e-29  Score=169.29  Aligned_cols=84  Identities=21%  Similarity=0.344  Sum_probs=74.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+...+.+..+ .|.|+|+||||++.+ ..||++++|++|++..
T Consensus       140 SGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~  219 (359)
T 3fvq_A          140 SGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ  219 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999988888766655543 589999999999886 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       220 ~g~~~el  226 (359)
T 3fvq_A          220 TASPHEL  226 (359)
T ss_dssp             EECHHHH
T ss_pred             EeCHHHH
Confidence             887764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.95  E-value=1.6e-28  Score=161.46  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~   78 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. . ||++++|++|++..
T Consensus       166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~  245 (267)
T 2zu0_C          166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK  245 (267)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999988888665443345899999999998875 3 89999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       246 ~g~~~~~  252 (267)
T 2zu0_C          246 SGDFTLV  252 (267)
T ss_dssp             EECTTHH
T ss_pred             EcCHHHH
Confidence             776653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.95  E-value=9.7e-29  Score=162.40  Aligned_cols=84  Identities=20%  Similarity=0.264  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  240 (263)
T 2olj_A          161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE  240 (263)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999988888765544446899999999999875 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       241 g~~~~~  246 (263)
T 2olj_A          241 GKPEDL  246 (263)
T ss_dssp             ECHHHH
T ss_pred             CCHHHH
Confidence            766553

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=1.2e-28  Score=160.58  Aligned_cols=83  Identities=20%  Similarity=0.320  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+.+.+++.+.+. .+|.|+|++||+++.+..||++++|++|++.. |
T Consensus       147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g  225 (247)
T 2ff7_A          147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG  225 (247)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999988888765443 56899999999998877799999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       226 ~~~~l  230 (247)
T 2ff7_A          226 KHKEL  230 (247)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            66553

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=9.5e-29  Score=160.32  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+ ..||++++|++|++.. 
T Consensus       141 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  220 (240)
T 1ji0_A          141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999998888876544434689999999999876 5799999999999875 


Q ss_pred             Ccccc
Q psy1506          79 GWVEE   83 (85)
Q Consensus        79 g~~~~   83 (85)
                      |++++
T Consensus       221 g~~~~  225 (240)
T 1ji0_A          221 GKASE  225 (240)
T ss_dssp             EEHHH
T ss_pred             cCHHH
Confidence            66554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.95  E-value=7.5e-29  Score=169.94  Aligned_cols=84  Identities=23%  Similarity=0.258  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..++..+.+...+ |.|+|+||||++++ ..||++++|++|++..
T Consensus       135 SGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~  214 (381)
T 3rlf_A          135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  214 (381)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999888888766554444 89999999999876 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       215 ~g~~~~l  221 (381)
T 3rlf_A          215 VGKPLEL  221 (381)
T ss_dssp             EECHHHH
T ss_pred             EeCHHHH
Confidence             877764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.95  E-value=1.9e-28  Score=157.53  Aligned_cols=78  Identities=12%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+..||++++|++|++..
T Consensus       142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~  219 (224)
T 2pcj_A          142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG  219 (224)
T ss_dssp             CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence            789999999999999999999999999999999988888765544446899999999998776799999999998865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.95  E-value=1.3e-28  Score=159.43  Aligned_cols=84  Identities=52%  Similarity=0.812  Sum_probs=72.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH--hhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~--~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.  ....++.|+|++||+++.+..||++++|++|++..
T Consensus       129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~  208 (237)
T 2cbz_A          129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE  208 (237)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence            7899999999999999999999999999999998888876543  23345889999999998877799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       209 ~g~~~~~  215 (237)
T 2cbz_A          209 MGSYQEL  215 (237)
T ss_dssp             EECHHHH
T ss_pred             eCCHHHH
Confidence             776653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.95  E-value=1.7e-28  Score=161.62  Aligned_cols=84  Identities=20%  Similarity=0.233  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+... +|.|+|++||+++.+..||++++|++|++.. 
T Consensus       158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~  237 (271)
T 2ixe_A          158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ  237 (271)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999998888766544333 3899999999998876799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       238 g~~~~l  243 (271)
T 2ixe_A          238 GTHLQL  243 (271)
T ss_dssp             ECHHHH
T ss_pred             CCHHHH
Confidence            766553

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.95  E-value=8.5e-29  Score=159.62  Aligned_cols=84  Identities=37%  Similarity=0.613  Sum_probs=72.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+.+.+++.++....++.|+|++||+++.+..||++++|++|++.. |
T Consensus       132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  211 (229)
T 2pze_A          132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG  211 (229)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887643333445789999999998876799999999998875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       212 ~~~~~  216 (229)
T 2pze_A          212 TFSEL  216 (229)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            66543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=2e-28  Score=160.33  Aligned_cols=84  Identities=21%  Similarity=0.275  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       148 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~  227 (256)
T 1vpl_A          148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET  227 (256)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999988888765544446899999999999875 599999999999874 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       228 g~~~~~  233 (256)
T 1vpl_A          228 GTVEEL  233 (256)
T ss_dssp             EEHHHH
T ss_pred             cCHHHH
Confidence            665543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.95  E-value=1.1e-28  Score=162.27  Aligned_cols=84  Identities=20%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhc------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhh-hCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYK------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLN-HVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~-~~d~v~~l~   72 (85)
                      |+||+||++|||||+.      +|+++||||||+|||+..+..+++.+.+...+ +.|+|++||+++.+. .||++++|+
T Consensus       143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~  222 (266)
T 4g1u_C          143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA  222 (266)
T ss_dssp             CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence            7899999999999999      99999999999999999988888765444444 579999999999874 699999999


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.. |+++++
T Consensus       223 ~G~i~~~g~~~~~  235 (266)
T 4g1u_C          223 QGKLVACGTPEEV  235 (266)
T ss_dssp             TTEEEEEECHHHH
T ss_pred             CCEEEEEcCHHHH
Confidence            999875 877765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.95  E-value=3.1e-28  Score=159.53  Aligned_cols=83  Identities=18%  Similarity=0.322  Sum_probs=72.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+ ....++.|+|++||+++.+..||++++|++|++.. |
T Consensus       157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l-~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g  235 (260)
T 2ghi_A          157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAV-EDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKG  235 (260)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHH-HHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-HHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887654 44455889999999998877799999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       236 ~~~~l  240 (260)
T 2ghi_A          236 THKDL  240 (260)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            76553

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.95  E-value=4.4e-28  Score=157.98  Aligned_cols=82  Identities=16%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-h-CCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-H-VDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~-~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+. . ||++++|++|++..
T Consensus       145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~  224 (250)
T 2d2e_A          145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA  224 (250)
T ss_dssp             ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765444345899999999998875 4 59999999999875


Q ss_pred             -Cccc
Q psy1506          79 -GWVE   82 (85)
Q Consensus        79 -g~~~   82 (85)
                       |+++
T Consensus       225 ~g~~~  229 (250)
T 2d2e_A          225 TGGPE  229 (250)
T ss_dssp             EESHH
T ss_pred             EeCHH
Confidence             6554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.95  E-value=3.1e-28  Score=159.91  Aligned_cols=84  Identities=26%  Similarity=0.316  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+. .||++++|++|++.. 
T Consensus       140 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~  219 (266)
T 2yz2_A          140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD  219 (266)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            789999999999999999999999999999999988888765544446899999999999875 599999999998874 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       220 g~~~~~  225 (266)
T 2yz2_A          220 GTRMEF  225 (266)
T ss_dssp             EEHHHH
T ss_pred             CCHHHH
Confidence            665543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=1.2e-28  Score=160.14  Aligned_cols=84  Identities=26%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++..
T Consensus       128 SgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~  207 (240)
T 2onk_A          128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE  207 (240)
T ss_dssp             CHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765444333 88999999999876 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       208 ~g~~~~~  214 (240)
T 2onk_A          208 KGKLKEL  214 (240)
T ss_dssp             EECHHHH
T ss_pred             ECCHHHH
Confidence             776653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.95  E-value=1.2e-28  Score=160.02  Aligned_cols=83  Identities=22%  Similarity=0.318  Sum_probs=73.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+. .+|.|+|++||+++.+..||++++|++|++.. |
T Consensus       141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g  219 (243)
T 1mv5_A          141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG  219 (243)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH-HTTSEEEEECCSHHHHHHCSEEEEEETTEECCCS
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeC
Confidence            789999999999999999999999999999999988888765444 36899999999998877799999999999875 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       220 ~~~~~  224 (243)
T 1mv5_A          220 KHNEL  224 (243)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            66553

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.95  E-value=4.2e-28  Score=165.80  Aligned_cols=84  Identities=24%  Similarity=0.250  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus       143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  222 (372)
T 1v43_A          143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ  222 (372)
T ss_dssp             CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765544444 88999999999886 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       223 ~g~~~~l  229 (372)
T 1v43_A          223 IGSPTEV  229 (372)
T ss_dssp             EECHHHH
T ss_pred             eCCHHHH
Confidence             777664

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.95  E-value=2.6e-28  Score=166.02  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||++.+ ..||++++|++|++..
T Consensus       147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  226 (355)
T 1z47_A          147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ  226 (355)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765544443 89999999999886 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       227 ~g~~~~l  233 (355)
T 1z47_A          227 FGTPEEV  233 (355)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             777654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.95  E-value=2.5e-28  Score=165.98  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+.+.+.+...+ |.|+|++|||++.+ ..||++++|++|++..
T Consensus       142 SGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  221 (353)
T 1oxx_K          142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ  221 (353)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888765544343 89999999999886 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       222 ~g~~~~l  228 (353)
T 1oxx_K          222 VGKPEDL  228 (353)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             777654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.95  E-value=2.7e-28  Score=161.35  Aligned_cols=84  Identities=24%  Similarity=0.301  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEE--EEEecCcchh-hhCCeEEEEcCceee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTR--ILVTHQLQYL-NHVDQIVFLNNVSKT   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tv--i~vtH~~~~~-~~~d~v~~l~~g~i~   77 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+++.+++.+.+...+|.|+  |++||+++.+ ..||++++|++|++.
T Consensus       163 SgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~  242 (279)
T 2ihy_A          163 STGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI  242 (279)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            7899999999999999999999999999999999888887654443448899  9999999886 569999999999987


Q ss_pred             c-Cccccc
Q psy1506          78 S-GWVEEI   84 (85)
Q Consensus        78 ~-g~~~~~   84 (85)
                      . |+++++
T Consensus       243 ~~g~~~~~  250 (279)
T 2ihy_A          243 QQGAVEDI  250 (279)
T ss_dssp             EEEEHHHH
T ss_pred             EECCHHHH
Confidence            5 766554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.95  E-value=3.2e-28  Score=165.79  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus       135 SgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  214 (359)
T 2yyz_A          135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ  214 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765544343 88999999999886 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       215 ~g~~~~l  221 (359)
T 2yyz_A          215 YGTPDEV  221 (359)
T ss_dssp             EECHHHH
T ss_pred             eCCHHHH
Confidence             777664

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.95  E-value=5e-28  Score=158.12  Aligned_cols=83  Identities=23%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++.+ ..||++++|++|+ ..
T Consensus       130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~  208 (253)
T 2nq2_C          130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK  208 (253)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence            789999999999999999999999999999999988888765544445 89999999999987 5799999999998 54


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       209 ~g~~~~~  215 (253)
T 2nq2_C          209 FGETRNI  215 (253)
T ss_dssp             EEEHHHH
T ss_pred             cCCHHHH
Confidence             766554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.95  E-value=2.8e-28  Score=165.48  Aligned_cols=84  Identities=26%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+...+.+... .|.|+|++|||.+.+ ..||++++|++|++..
T Consensus       129 SgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~  208 (348)
T 3d31_A          129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ  208 (348)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999998888876554434 489999999999876 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       209 ~g~~~~~  215 (348)
T 3d31_A          209 VGKPEEI  215 (348)
T ss_dssp             EECHHHH
T ss_pred             ECCHHHH
Confidence             777654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.95  E-value=3.8e-28  Score=166.03  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..++.+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus       141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  220 (372)
T 1g29_1          141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ  220 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence            799999999999999999999999999999999988888765544443 89999999999886 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       221 ~g~~~~l  227 (372)
T 1g29_1          221 VGSPDEV  227 (372)
T ss_dssp             EECHHHH
T ss_pred             eCCHHHH
Confidence             777664

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=4.8e-28  Score=172.63  Aligned_cols=83  Identities=22%  Similarity=0.288  Sum_probs=75.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus       481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g  559 (587)
T 3qf4_A          481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL-KRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG  559 (587)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH-HHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999988887664 44567899999999999888899999999999986 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++|+
T Consensus       560 ~~~el  564 (587)
T 3qf4_A          560 THKEL  564 (587)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            88765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.95  E-value=2.7e-28  Score=166.32  Aligned_cols=84  Identities=21%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+...+.+...+ |.|+|++|||.+.+ ..||++++|++|++..
T Consensus       135 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  214 (362)
T 2it1_A          135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ  214 (362)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999988888765544343 89999999999876 5799999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       215 ~g~~~~~  221 (362)
T 2it1_A          215 VGTPDEV  221 (362)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             777664

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=7.7e-28  Score=171.21  Aligned_cols=83  Identities=27%  Similarity=0.390  Sum_probs=74.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+.+. +....+++|+|++||+++.+..||++++|++|++.+ |
T Consensus       479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g  557 (578)
T 4a82_A          479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA-LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG  557 (578)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence            78999999999999999999999999999999987777654 455567899999999999988899999999999976 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       558 ~~~el  562 (578)
T 4a82_A          558 THREL  562 (578)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=8.3e-28  Score=171.65  Aligned_cols=83  Identities=24%  Similarity=0.361  Sum_probs=74.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+|+|+|++||+++.+..||++++|++|++.+ |
T Consensus       493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g  571 (598)
T 3qf4_B          493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM-WKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG  571 (598)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHH-HHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887654 44457899999999999988899999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       572 ~~~~l  576 (598)
T 3qf4_B          572 KHDEL  576 (598)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            88765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.94  E-value=8.6e-28  Score=156.81  Aligned_cols=84  Identities=18%  Similarity=0.192  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCCC-------EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYKNAD-------IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~-------illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~   72 (85)
                      |+||+||++|||||+.+|+       ++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++.+ ..||++++|+
T Consensus       128 SgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~  207 (249)
T 2qi9_C          128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK  207 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            7899999999999999999       9999999999999998888876554444689999999999987 5799999999


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.. |+++++
T Consensus       208 ~G~i~~~g~~~~~  220 (249)
T 2qi9_C          208 GGKMLASGRREEV  220 (249)
T ss_dssp             TTEEEEEEEHHHH
T ss_pred             CCEEEEeCCHHHH
Confidence            998874 766554

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.94  E-value=4.5e-28  Score=166.49  Aligned_cols=83  Identities=19%  Similarity=0.220  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+..+..+...+ +...++.|+|++||+.+.+..||++++|++|++.. |
T Consensus       157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l-~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g  235 (390)
T 3gd7_A          157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL-KQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYD  235 (390)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHH-HTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEES
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887654 44556789999999998777799999999999975 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       236 ~~~el  240 (390)
T 3gd7_A          236 SILEL  240 (390)
T ss_dssp             SHHHH
T ss_pred             CHHHH
Confidence            88765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.94  E-value=7.6e-28  Score=182.95  Aligned_cols=84  Identities=24%  Similarity=0.318  Sum_probs=76.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+|+|||||||+||+++.+.+.+ .++...+++|+|+|+|+++.+..||+|++|++|++++ |
T Consensus      1219 SgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~-~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A         1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE-ALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHH-HHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHH-HHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEEC
Confidence            7899999999999999999999999999999998776654 4566667999999999999999999999999999986 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus      1298 th~eLl 1303 (1321)
T 4f4c_A         1298 THTQLM 1303 (1321)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            998863

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.94  E-value=9.2e-28  Score=159.60  Aligned_cols=84  Identities=37%  Similarity=0.613  Sum_probs=72.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.++....++.|+|++||+++.+..||++++|++|++.. |
T Consensus       161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g  240 (290)
T 2bbs_A          161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG  240 (290)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeC
Confidence            789999999999999999999999999999999888887643333445889999999998877799999999998864 7


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       241 ~~~~l  245 (290)
T 2bbs_A          241 TFSEL  245 (290)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            76553

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.94  E-value=2.1e-27  Score=169.03  Aligned_cols=83  Identities=19%  Similarity=0.349  Sum_probs=74.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+|+|+|++||+++.+..||++++|++|++.+ |
T Consensus       482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  560 (582)
T 3b5x_A          482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG  560 (582)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence            799999999999999999999999999999999888887654 44456899999999999888899999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       561 ~~~~l  565 (582)
T 3b5x_A          561 RHADL  565 (582)
T ss_pred             CHHHH
Confidence            87765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.94  E-value=2.8e-27  Score=168.35  Aligned_cols=83  Identities=20%  Similarity=0.349  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++||||++++|++++|||||++||+.+.+.+.+.+ ....+|+|+|++||+++.+..||++++|++|++.+ |
T Consensus       482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  560 (582)
T 3b60_A          482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG  560 (582)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH-HHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence            789999999999999999999999999999999888887654 44456899999999999888899999999999875 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       561 ~~~~l  565 (582)
T 3b60_A          561 THSEL  565 (582)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            77764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=1e-26  Score=152.72  Aligned_cols=81  Identities=26%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCC-eEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVD-QIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d-~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+.+++.+.+.+ ....+  |+|++||+++.+ ..|| ++++|++|++..
T Consensus       130 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L-~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~  206 (263)
T 2pjz_A          130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI-KEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQG  206 (263)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH-HHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH-HHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence            789999999999999999999999999999999888887654 44433  999999999886 5699 999999998875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       207 ~g~~~~l  213 (263)
T 2pjz_A          207 PISVSEL  213 (263)
T ss_dssp             EEEHHHH
T ss_pred             ecCHHHH
Confidence             766654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.94  E-value=4e-27  Score=179.04  Aligned_cols=83  Identities=23%  Similarity=0.294  Sum_probs=74.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |||||||++||||++++|+|+|||||||+||+++...+. ..+....+|+|+|+|||+++.+..||+|++|++|++.+ |
T Consensus       556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~-~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~G  634 (1321)
T 4f4c_A          556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ-QALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVG  634 (1321)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHH-HHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHH-HHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccC
Confidence            799999999999999999999999999999999765554 55666678999999999999999999999999999986 9


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++|+
T Consensus       635 th~eL  639 (1321)
T 4f4c_A          635 DHRAL  639 (1321)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            88775

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=5.7e-26  Score=172.43  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=74.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|++++|||||++||+.+.+.+.+. +....+|+|+|+|||+++.+..||++++|++|++.+ |
T Consensus      1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~-l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A         1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA-LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHH-HHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence            78999999999999999999999999999999987777655 455667899999999999988899999999999986 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus      1252 ~~~~l 1256 (1284)
T 3g5u_A         1252 THQQL 1256 (1284)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            88765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=1.2e-25  Score=161.90  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=73.7

Q ss_pred             CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+||++|||||+.+|   ++|||||||+|||+.+...+++.+.+...+|.|+|+||||++.+..||++++|      
T Consensus       545 SgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~  624 (670)
T 3ux8_A          545 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD  624 (670)
T ss_dssp             CHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGG
T ss_pred             CHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCC
Confidence            799999999999999887   49999999999999999988876555445689999999999988779999999      


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|++.. |+++++
T Consensus       625 ~~G~i~~~g~~~~~  638 (670)
T 3ux8_A          625 RGGQIVAVGTPEEV  638 (670)
T ss_dssp             GCCEEEEEECHHHH
T ss_pred             CCCEEEEecCHHHH
Confidence            8899875 887764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=1.4e-25  Score=161.54  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+||++|||||+.+|+  +|||||||++||+.....+++.+.+...+|.|+|+||||++.+..||++++|      +
T Consensus       204 SGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~  283 (670)
T 3ux8_A          204 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIH  283 (670)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGG
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEeccccccc
Confidence            7899999999999999998  9999999999999999998876555445689999999999987779999999      7


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.. |+++++
T Consensus       284 ~G~i~~~g~~~~~  296 (670)
T 3ux8_A          284 GGEVVAAGTPEEV  296 (670)
T ss_dssp             CCSEEEEECHHHH
T ss_pred             CCEEEEecCHHHH
Confidence            888764 776653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=7.9e-26  Score=171.65  Aligned_cols=83  Identities=22%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+++|||||||+||+++.+.+.+ .+....+|+|+|+|||+++.+..||+|++|++|++.+ |
T Consensus       528 SgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g  606 (1284)
T 3g5u_A          528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA-ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG  606 (1284)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH-HHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence            7899999999999999999999999999999997666654 4555567899999999999988899999999999876 8


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       607 ~~~~l  611 (1284)
T 3g5u_A          607 NHDEL  611 (1284)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            77664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.3e-25  Score=159.75  Aligned_cols=84  Identities=20%  Similarity=0.215  Sum_probs=72.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcC--cee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNN--VSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~--g~i   76 (85)
                      |+||+||++|||||+.+|++|||||||+|||+.+...+++.+.+... .|.|+|+||||++++. .||++++|++  |++
T Consensus       469 SGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~  548 (608)
T 3j16_B          469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN  548 (608)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeE
Confidence            79999999999999999999999999999999988888766544433 4899999999999874 6999999986  665


Q ss_pred             e-cCccccc
Q psy1506          77 T-SGWVEEI   84 (85)
Q Consensus        77 ~-~g~~~~~   84 (85)
                      . .|+|+++
T Consensus       549 ~~~g~p~~~  557 (608)
T 3j16_B          549 AHARAPESL  557 (608)
T ss_dssp             EECCCCEEH
T ss_pred             EecCChHHH
Confidence            5 4888775

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.91  E-value=2.5e-24  Score=146.44  Aligned_cols=77  Identities=13%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             CCCchhHHHHHHHHh------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      |+||+||++|||||+      .+|+++||||||++||+.....++..+.....+|.|+|+|||+++....+|++++|++|
T Consensus       281 SgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G  360 (365)
T 3qf7_A          281 SGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGG  360 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETT
T ss_pred             CHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence            799999999999999      79999999999999999998888876554445689999999999887779999999999


Q ss_pred             eee
Q psy1506          75 SKT   77 (85)
Q Consensus        75 ~i~   77 (85)
                      ++.
T Consensus       361 ~i~  363 (365)
T 3qf7_A          361 VVV  363 (365)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            875

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.91  E-value=5.2e-24  Score=129.87  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             CCCchhHHHHH------HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCF------EAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~la------ral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+||++||      ||++.+|++++|||||++||+...+.+.+.+.....+|.|+|++||+......||++++|+
T Consensus        59 SgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~  136 (148)
T 1f2t_B           59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS  136 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             CHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence            78999999876      8999999999999999999999888887665443345789999999986556799999994

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=1.3e-24  Score=161.02  Aligned_cols=84  Identities=23%  Similarity=0.291  Sum_probs=74.3

Q ss_pred             CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+|||+|||||+++|   ++|||||||+|||+...+.+++.+.+...+|.|+|+|+|+++.+..||++++|      
T Consensus       807 SGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~  886 (916)
T 3pih_A          807 SGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGK  886 (916)
T ss_dssp             CHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGG
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCC
Confidence            799999999999999875   79999999999999998888876554445689999999999988889999999      


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|+++. |+++++
T Consensus       887 ~~G~Iv~~Gtpeel  900 (916)
T 3pih_A          887 EGGYIVATGTPEEI  900 (916)
T ss_dssp             GCCEEEEEESHHHH
T ss_pred             CCCEEEEEcCHHHH
Confidence            8898875 988875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.90  E-value=1.9e-24  Score=153.17  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=71.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEcC--cee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN-HVDQIVFLNN--VSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~-~~d~v~~l~~--g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+...+++.+.+.. ..|.|+|+||||++++. .||++++|++  |.+
T Consensus       403 SGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~  482 (538)
T 1yqt_A          403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKY  482 (538)
T ss_dssp             CHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceE
Confidence            7999999999999999999999999999999999888887654433 24889999999999875 6999999985  444


Q ss_pred             e-cCccccc
Q psy1506          77 T-SGWVEEI   84 (85)
Q Consensus        77 ~-~g~~~~~   84 (85)
                      . .|+++++
T Consensus       483 ~~~g~~~~~  491 (538)
T 1yqt_A          483 GRALPPMGM  491 (538)
T ss_dssp             EEECCCEEH
T ss_pred             eecCCHHHH
Confidence            3 4777654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.90  E-value=2.3e-24  Score=152.80  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN-HVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~g   74 (85)
                      |+||+||++|||||+.+|++|||||||++||+.++..+++.+.+... .|.|+|+||||++.+. .||++++|+++
T Consensus       387 SGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~  462 (538)
T 3ozx_A          387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE  462 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            79999999999999999999999999999999998888876554443 5889999999999875 69999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.90  E-value=3.2e-24  Score=151.93  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=65.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g   74 (85)
                      |+||+||++|||||+.+|++|||||||++||+...+.+++.+.+...+|.|+|+|||+++++. .||++++|++|
T Consensus       160 SgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            789999999999999999999999999999999888888765544446899999999999875 59999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.90  E-value=4.7e-25  Score=141.26  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=61.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh-CCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH-VDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~g~i   76 (85)
                      |+||+||++|||||+.+|+++||||||++||+.+.+.+++.+.+...+|.|+|++||+++.+.. +|+++++ .|.+
T Consensus       135 SgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            7899999999999999999999999999999999888887654443357899999999988754 6777654 4443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.90  E-value=4.2e-24  Score=153.15  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecCcchhh-hCCeEEEEcC--cee
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LKDKTRILVTHQLQYLN-HVDQIVFLNN--VSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~~~-~~d~v~~l~~--g~i   76 (85)
                      |+||+||++|||||+.+|++|||||||++||+..+..+++.+.+.. ..|.|+|+||||++++. .||++++|++  |.+
T Consensus       473 SGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~  552 (607)
T 3bk7_A          473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH  552 (607)
T ss_dssp             CHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceE
Confidence            7999999999999999999999999999999998888876654433 35889999999999875 6999999985  544


Q ss_pred             e-cCccccc
Q psy1506          77 T-SGWVEEI   84 (85)
Q Consensus        77 ~-~g~~~~~   84 (85)
                      . .|+++++
T Consensus       553 ~~~g~p~~~  561 (607)
T 3bk7_A          553 GRALPPMGM  561 (607)
T ss_dssp             EEECCCEEH
T ss_pred             EecCCHHHH
Confidence            3 4777654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.90  E-value=6.4e-24  Score=152.21  Aligned_cols=74  Identities=20%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g   74 (85)
                      |+||+||++|||||+.+|++|||||||++||+..+..+++.+.+...+|.|+|+||||++.+. .||++++|+++
T Consensus       230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            799999999999999999999999999999999888887765444446899999999999875 59999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.89  E-value=9.8e-24  Score=149.58  Aligned_cols=74  Identities=27%  Similarity=0.382  Sum_probs=65.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++|||||+.+|++|||||||++||+.....+++.+ +.+.+|.|+|+|||+++++. .||++++|++|.
T Consensus       140 SgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l-~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            789999999999999999999999999999999888887654 44445899999999999875 599999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.5e-23  Score=150.31  Aligned_cols=75  Identities=23%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCce
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVS   75 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~   75 (85)
                      |+||+||++|||||+.+|++|||||||++||+.....+++.+.+...+|.|+|+|||+++++. .+|++++|++|.
T Consensus       223 SgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          223 SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            789999999999999999999999999999999888887665444456899999999999875 599999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=1.5e-23  Score=155.41  Aligned_cols=84  Identities=21%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             CCCchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+||++|||||+++|+  +|||||||+|||+...+.+++.+.+...+|.|+|+||||++.+..||++++|      +
T Consensus       466 SGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~  545 (916)
T 3pih_A          466 SGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTN  545 (916)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGG
T ss_pred             CHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccC
Confidence            7999999999999999887  9999999999999999999876554445689999999999888779999999      8


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.+ |+++++
T Consensus       546 ~G~iv~~G~~~e~  558 (916)
T 3pih_A          546 GGRVVFQGTVDEL  558 (916)
T ss_dssp             CSEEEEEECHHHH
T ss_pred             CCEEEEeechhhh
Confidence            888875 887664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.89  E-value=3.6e-23  Score=154.08  Aligned_cols=80  Identities=25%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceee--
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKT--   77 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~--   77 (85)
                      |+|||||++|||||+.+|+++||||||++||+.+.+.+.+.+. .  .|.|+|++||+++++. .||++++|++|++.  
T Consensus       550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~-~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~  626 (986)
T 2iw3_A          550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-T--CGITSITISHDSVFLDNVCEYIINYEGLKLRKY  626 (986)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHH-H--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-h--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecC
Confidence            7999999999999999999999999999999998888876544 3  5889999999999875 69999999999885  


Q ss_pred             cCcccc
Q psy1506          78 SGWVEE   83 (85)
Q Consensus        78 ~g~~~~   83 (85)
                      .|++++
T Consensus       627 ~G~~~e  632 (986)
T 2iw3_A          627 KGNFTE  632 (986)
T ss_dssp             ESCHHH
T ss_pred             CCCHHH
Confidence            376654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.88  E-value=3.2e-23  Score=152.72  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=73.3

Q ss_pred             CCCchhHHHHHHHHhcC---CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~---p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+||++|||+|+.+   |++|||||||+|||+...+.+++.+.+...+|.|||+|||+++++..||++++|      
T Consensus       732 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~  811 (842)
T 2vf7_A          732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGE  811 (842)
T ss_dssp             CHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGG
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCC
Confidence            78999999999999996   699999999999999998888876554445789999999999988779999999      


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|++.. |+++++
T Consensus       812 ~~G~Iv~~g~~~el  825 (842)
T 2vf7_A          812 DGGRLVAQGTPAEV  825 (842)
T ss_dssp             GCCSEEEEECHHHH
T ss_pred             CCCEEEEEcCHHHH
Confidence            6888864 777664

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.88  E-value=1e-22  Score=139.03  Aligned_cols=76  Identities=13%  Similarity=0.075  Sum_probs=67.8

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE----cCc
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL----NNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l----~~g   74 (85)
                      |+||+||++||++|+.+|  ++|||||||++||+.....+.+.+ ..+.++.++|+|||+++++..||++++|    ++|
T Consensus       297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L-~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G  375 (415)
T 4aby_A          297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQL-SRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG  375 (415)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred             CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence            789999999999999999  999999999999999888887664 4444689999999999888789999999    888


Q ss_pred             eee
Q psy1506          75 SKT   77 (85)
Q Consensus        75 ~i~   77 (85)
                      ++.
T Consensus       376 ~~~  378 (415)
T 4aby_A          376 RTV  378 (415)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.88  E-value=1.2e-22  Score=150.97  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+|||.||++|.++|  ++|||||||++||+...+.++..+.+....|.|||+|+|+++++..||++++|      +
T Consensus       506 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~  585 (972)
T 2r6f_A          506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIH  585 (972)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGG
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCC
Confidence            789999999999999985  89999999999999999988876555445689999999999988789999999      6


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++++ |+++++
T Consensus       586 gG~iv~~G~~~e~  598 (972)
T 2r6f_A          586 GGEVVAAGTPEEV  598 (972)
T ss_dssp             CCSEEEEECTTTT
T ss_pred             CCEEEEecCHHHH
Confidence            788775 888765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.88  E-value=6.5e-23  Score=152.32  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             CCCchhHHHHHHHHhcCC---CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------
Q psy1506           1 MTGKSSCQLCFEAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p---~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------   71 (85)
                      |+||+||++|||+|+.+|   ++|||||||+|||+...+.+++.+.+...+|.|+|++||+++.+..||++++|      
T Consensus       847 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~  926 (972)
T 2r6f_A          847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD  926 (972)
T ss_dssp             CHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCC
Confidence            789999999999999875   99999999999999998888876555445789999999999988779999999      


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|++.. |+++++
T Consensus       927 ~~G~Iv~~g~~~el  940 (972)
T 2r6f_A          927 RGGQIVAVGTPEEV  940 (972)
T ss_dssp             SCCSEEEEESHHHH
T ss_pred             CCCEEEEecCHHHH
Confidence            6788864 777654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.87  E-value=3.9e-22  Score=146.98  Aligned_cols=84  Identities=18%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE------c
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL------N   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l------~   72 (85)
                      |+||+|||.||++|..+|  ++|||||||++||+...+.+++.+......|.|+|+|+|+++++..||++++|      +
T Consensus       381 SGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~  460 (842)
T 2vf7_A          381 SPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEK  460 (842)
T ss_dssp             CHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGG
T ss_pred             CHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccC
Confidence            789999999999999999  59999999999999999988876544445689999999999988789999999      6


Q ss_pred             Cceeec-Cccccc
Q psy1506          73 NVSKTS-GWVEEI   84 (85)
Q Consensus        73 ~g~i~~-g~~~~~   84 (85)
                      +|++.+ |+++++
T Consensus       461 ~G~iv~~g~~~~~  473 (842)
T 2vf7_A          461 GGEILYSGPPEGL  473 (842)
T ss_dssp             CCSEEEEECGGGG
T ss_pred             CCEEEEecCHHHH
Confidence            787765 887765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.86  E-value=2.1e-22  Score=150.03  Aligned_cols=75  Identities=15%  Similarity=0.251  Sum_probs=65.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++|||||||++||+.+...+.+.+ ..+  +.|+|++||+.+++. .||++++|++|++..
T Consensus       903 SGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L-~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~  978 (986)
T 2iw3_A          903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL-KEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP  978 (986)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH-HSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH-HHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999877776543 332  569999999999874 699999999998864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.85  E-value=2.3e-21  Score=136.40  Aligned_cols=73  Identities=12%  Similarity=0.037  Sum_probs=65.0

Q ss_pred             CCCchhHHHHHHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           1 MTGKSSCQLCFEAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p--~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      |+||+||++|||+++.+|  +++||||||+|||+.....+...+... .++.+||+|||+++.+..||++++|+++
T Consensus       399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~-~~~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-ADTRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH-HHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            799999999999999999  999999999999999888888765443 3488999999999887789999999654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.83  E-value=2.7e-20  Score=124.45  Aligned_cols=75  Identities=19%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeE--EEEcCc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQI--VFLNNV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v--~~l~~g   74 (85)
                      |+||+||++|||||+    .+|+++||||||++||+...+.+++.+ ....++.++|++||+.+....||++  +++.+|
T Consensus       221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g  299 (322)
T 1e69_A          221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL-KENSKHTQFIVITHNKIVMEAADLLHGVTMVNG  299 (322)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH-HHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEECCHHHHhhCceEEEEEEeCC
Confidence            689999999999997    689999999999999999888887654 4445678999999997767779986  788887


Q ss_pred             ee
Q psy1506          75 SK   76 (85)
Q Consensus        75 ~i   76 (85)
                      ..
T Consensus       300 ~s  301 (322)
T 1e69_A          300 VS  301 (322)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.83  E-value=1.9e-20  Score=126.00  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             CCCchh------HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSS------CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~------~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+|      |+++|++++.+|++++|||||++||+.....++..+.....++.++|++||+.+....||++++++
T Consensus       250 S~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~  327 (339)
T 3qkt_A          250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS  327 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence            789999      678888889999999999999999999888887765444455789999999977667799999986

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.82  E-value=4.5e-20  Score=114.94  Aligned_cols=74  Identities=19%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc--Cc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN--NV   74 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~--~g   74 (85)
                      |+|||||++|||+++    .+|++++||||+++||+.+.+.+.+. +....++.++|++||+......||+++.+.  +|
T Consensus        66 SgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~-l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g  144 (173)
T 3kta_B           66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADL-IKESSKESQFIVITLRDVMMANADKIIGVSMRDG  144 (173)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHH-HHHhccCCEEEEEEecHHHHHhCCEEEEEEecCC
Confidence            789999999999997    45799999999999999988888765 444555678999999987778899998654  55


Q ss_pred             e
Q psy1506          75 S   75 (85)
Q Consensus        75 ~   75 (85)
                      .
T Consensus       145 ~  145 (173)
T 3kta_B          145 V  145 (173)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.81  E-value=8e-20  Score=124.42  Aligned_cols=78  Identities=14%  Similarity=-0.008  Sum_probs=66.4

Q ss_pred             CCCchhHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~---------~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+||+||++||++|+         .+|+++||||||++||+...+.+++.+ ....  .|+|++||. +.  .+++++++
T Consensus       267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l-~~~~--qt~i~~th~-~~--~~~~i~~l  340 (359)
T 2o5v_A          267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA-ASVP--QAIVTGTEL-AP--GAALTLRA  340 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH-HHSS--EEEEEESSC-CT--TCSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH-HhcC--cEEEEEEec-cc--cCCEEEEE
Confidence            789999999999999         899999999999999999888887654 3332  689999994 44  78999999


Q ss_pred             cCceeec-Cccccc
Q psy1506          72 NNVSKTS-GWVEEI   84 (85)
Q Consensus        72 ~~g~i~~-g~~~~~   84 (85)
                      ++|++.. |+++++
T Consensus       341 ~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          341 QAGRFTPVADEEMQ  354 (359)
T ss_dssp             ETTEEEECCCTTTS
T ss_pred             ECCEEEecCCHHHH
Confidence            9999875 887764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.76  E-value=1.5e-20  Score=115.97  Aligned_cols=67  Identities=3%  Similarity=-0.116  Sum_probs=53.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHH----------------HHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVG----------------KHLFEDCISGFLKDKTRILVTHQLQYLNH   64 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~----------------~~i~~~~~~~~~~~~tvi~vtH~~~~~~~   64 (85)
                      |+||+||+++|||+..+|++++|||||++||+.++                ..+.+.+.....+|.|+|++||+++.+..
T Consensus        85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A           85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence            47999999999999999999999999999999843                55554432223458999999999988765


Q ss_pred             CCe
Q psy1506          65 VDQ   67 (85)
Q Consensus        65 ~d~   67 (85)
                      +++
T Consensus       165 ~~~  167 (171)
T 4gp7_A          165 VVF  167 (171)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            443

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.75  E-value=6.1e-18  Score=114.89  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             CCCchhHH------HHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQ------LCFEAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~------~laral~~~-p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+      ++|+++..+ |+++||||||++||+.....+.+.+ ....++.++|++||+++....+|+++++++
T Consensus       282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~~~~~vi~~th~~~~~~~~d~~~~l~k  360 (371)
T 3auy_A          282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF-RKVKSIPQMIIITHHRELEDVADVIINVKK  360 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH-HHCCSCSEEEEEESCGGGGGGCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH-HHhccCCeEEEEEChHHHHhhCCEEEEEEe
Confidence            78999988      567899999 9999999999999999888887654 444445689999999876567999999973

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.75  E-value=4.1e-18  Score=117.41  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=61.8

Q ss_pred             CCCchhHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~----~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |+||+|+++||++|+    .+|+++|||||+++||+.....+...+.....++.++|++||+......||+++.+.
T Consensus       335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~  410 (430)
T 1w1w_A          335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY  410 (430)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred             CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence            789999999999999    589999999999999999888887654433334789999999977777899999886

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.71  E-value=6.4e-19  Score=123.10  Aligned_cols=79  Identities=13%  Similarity=-0.009  Sum_probs=63.0

Q ss_pred             CCCchhHHHHHHH--HhcCCCE----EEEec-CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc------hh-hhCC
Q psy1506           1 MTGKSSCQLCFEA--VYKNADI----YLLDD-PLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ------YL-NHVD   66 (85)
Q Consensus         1 ~~g~~~~~~lara--l~~~p~i----lllDE-P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~------~~-~~~d   66 (85)
                      |+||+||+++|||  |+.+|++    +|||| ||++||+. .+.+. .+++.  .+.++++|+|+.+      .+ ..+|
T Consensus       237 SgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~--~~~tviiVth~~~~~l~~~~~~~~~d  312 (460)
T 2npi_A          237 YLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK--LNVNIMLVLCSETDPLWEKVKKTFGP  312 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH--TTCCEEEEECCSSCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHH-HHHHH--hCCCEEEEEccCchhhhHHHHHHhcc
Confidence            5799999999999  9999999    99999 99999997 34333 33333  2678999999887      44 4589


Q ss_pred             e-----EEEEc-CceeecCcccc
Q psy1506          67 Q-----IVFLN-NVSKTSGWVEE   83 (85)
Q Consensus        67 ~-----v~~l~-~g~i~~g~~~~   83 (85)
                      +     +++|+ +|++..|++++
T Consensus       313 r~~~~~vi~l~k~G~iv~g~~~~  335 (460)
T 2npi_A          313 ELGNNNIFFIPKLDGVSAVDDVY  335 (460)
T ss_dssp             HHCGGGEEEECCCTTCCCCCHHH
T ss_pred             cccCCEEEEEeCCCcEEECCHHH
Confidence            9     99999 88877665543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.67  E-value=4.8e-18  Score=108.18  Aligned_cols=56  Identities=9%  Similarity=0.011  Sum_probs=42.8

Q ss_pred             CchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH   64 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~   64 (85)
                      ||+||++|||||+.+|+++||||||++    +...+.+.+ ..+.+|.|+| +||+++.+..
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l-~~l~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFL-TRLGFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHH-TTBCTTCEEE-EEEC------
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHH-HHhcCCCEEE-EECCHHHHhC
Confidence            999999999999999999999999999    456666554 4445578999 9999876643

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.65  E-value=1.2e-16  Score=99.38  Aligned_cols=64  Identities=3%  Similarity=-0.035  Sum_probs=50.3

Q ss_pred             CCCchhHHHHHHH-----HhcCCCEEEEec--CCCCCCHHHHHHHHHHHHhhhcCCcEEEEEec---Ccchhh-hCCe
Q psy1506           1 MTGKSSCQLCFEA-----VYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGFLKDKTRILVTH---QLQYLN-HVDQ   67 (85)
Q Consensus         1 ~~g~~~~~~lara-----l~~~p~illlDE--P~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH---~~~~~~-~~d~   67 (85)
                      |+||+||+++|||     ++.+|++++|||  ||+++|+...+.+.+. +..  .+.++|+++|   +..++. .+++
T Consensus        78 SgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~-l~~--~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-MHD--PNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-HTC--TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH-Hhc--CCCeEEEEEccCCCchHHHHHHhc
Confidence            5799999999996     999999999999  9999999877766544 332  4667888885   666654 3554

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.53  E-value=4.9e-15  Score=104.41  Aligned_cols=74  Identities=14%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHH-----HHHHHHHHHHhhhcCCcEEEEEecCc----------chhh-h
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMH-----VGKHLFEDCISGFLKDKTRILVTHQL----------QYLN-H   64 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~-----~~~~i~~~~~~~~~~~~tvi~vtH~~----------~~~~-~   64 (85)
                      |+||+||+.+|+++..+|+++++| ||++||..     .++.+...+......|.|+|+++|+.          ..+. .
T Consensus       355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~  433 (525)
T 1tf7_A          355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI  433 (525)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee
Confidence            679999999999999999999999 99999998     77776654433334689999999998          5554 5


Q ss_pred             CCeEEEEcCce
Q psy1506          65 VDQIVFLNNVS   75 (85)
Q Consensus        65 ~d~v~~l~~g~   75 (85)
                      ||++++|++|+
T Consensus       434 ~D~vi~L~~ge  444 (525)
T 1tf7_A          434 TDTIILLQYVE  444 (525)
T ss_dssp             CSEEEEEEEEE
T ss_pred             eeEEEEEEEEE
Confidence            89999998775

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.51  E-value=9.1e-15  Score=108.99  Aligned_cols=83  Identities=14%  Similarity=-0.004  Sum_probs=66.2

Q ss_pred             CCCchhHHHHHHHH--hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEecCcchhhhCCeEEEEcCcee
Q psy1506           1 MTGKSSCQLCFEAV--YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL--KDKTRILVTHQLQYLNHVDQIVFLNNVSK   76 (85)
Q Consensus         1 ~~g~~~~~~laral--~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~g~i   76 (85)
                      |||+.++..+|+++  +.+|+++|||||++|+|+.....+...+++...  .|.+++++||+.+....++++..+.+|++
T Consensus       723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v  802 (934)
T 3thx_A          723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHV  802 (934)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEE
T ss_pred             hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEE
Confidence            57778888888888  899999999999999999887777555555543  38899999999877777888888888877


Q ss_pred             ec-Ccccc
Q psy1506          77 TS-GWVEE   83 (85)
Q Consensus        77 ~~-g~~~~   83 (85)
                      .. ++.++
T Consensus       803 ~~~~~~~~  810 (934)
T 3thx_A          803 TALTTEET  810 (934)
T ss_dssp             EEEEETTE
T ss_pred             EEEecCCc
Confidence            54 44443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.38  E-value=6.2e-14  Score=94.32  Aligned_cols=66  Identities=9%  Similarity=0.057  Sum_probs=52.7

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhhhCCeEEEEcCce
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFLNNVS   75 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~~~d~v~~l~~g~   75 (85)
                      +||+||+++||||..+|+++++|||++.   +    +.+ .++.+..| .|+++++|+.+....+||+++|.+|.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS---E----AYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHH-HHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence            6999999999999999999999999982   2    222 23334444 47999999998667789999998764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.31  E-value=1.6e-12  Score=96.86  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchhhh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYLNH   64 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~~~   64 (85)
                      |.||++++.++++ +.+|+++|||||++|+|+.....+...+++.+ . .|.+++++||+.+....
T Consensus       737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l  801 (918)
T 3thx_B          737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCEL  801 (918)
T ss_dssp             HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred             hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHH
Confidence            4588999999998 79999999999999999998888875556554 3 48999999999876543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.22  E-value=2.2e-11  Score=91.59  Aligned_cols=74  Identities=8%  Similarity=0.007  Sum_probs=57.3

Q ss_pred             CchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cC-CcEEEEEecCcchhh-hCCeEEEEcCceee
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LK-DKTRILVTHQLQYLN-HVDQIVFLNNVSKT   77 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~-~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~   77 (85)
                      |.++++++|++++.+|+++|||||++|+|+.....+...+++.+ .+ |.++|++||+.+... .++++.++ +|++.
T Consensus       854 ~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          854 VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             HHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            34567999999999999999999999999987555444445544 34 889999999998875 47887776 45554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.22  E-value=3.2e-11  Score=79.14  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHhcCCCEEEEecCCC---C---CCH-HHHHHHHHHHHhhhcC-CcEEEEEecCc--c--------------
Q psy1506           5 SSCQLCFEAVYKNADIYLLDDPLS---A---VDM-HVGKHLFEDCISGFLK-DKTRILVTHQL--Q--------------   60 (85)
Q Consensus         5 ~~~~~laral~~~p~illlDEP~~---~---LD~-~~~~~i~~~~~~~~~~-~~tvi~vtH~~--~--------------   60 (85)
                      +|++. |+++..+|+++++|||++   +   +|. .....+...+.....+ +.++|+++|+.  +              
T Consensus       136 ~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~  214 (296)
T 1cr0_A          136 LAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSIT  214 (296)
T ss_dssp             HHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------
T ss_pred             HHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHH
Confidence            56666 889999999999999999   4   344 3345555544333333 89999999985  3              


Q ss_pred             ------hh-hhCCeEEEEcCcee
Q psy1506          61 ------YL-NHVDQIVFLNNVSK   76 (85)
Q Consensus        61 ------~~-~~~d~v~~l~~g~i   76 (85)
                            .+ ..||++++|++|+.
T Consensus       215 dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          215 DLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             CCC---CHHHHCSEEEEEEEC--
T ss_pred             HhcccHHhHhhCcEEEEEecCcc
Confidence                  44 46999999987753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.21  E-value=6.5e-13  Score=91.87  Aligned_cols=68  Identities=9%  Similarity=0.028  Sum_probs=52.3

Q ss_pred             CCC--chhHHHHHHHHhc----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhh-----cC----CcEEEEEecCc
Q psy1506           1 MTG--KSSCQLCFEAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGF-----LK----DKTRILVTHQL   59 (85)
Q Consensus         1 ~~g--~~~~~~laral~~----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~-----~~----~~tvi~vtH~~   59 (85)
                      |+|  |+||+.+|+++..          +|++++|||||++||+...+.+.+.+.+..     ..    ..++++++|.+
T Consensus       156 S~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l  235 (413)
T 1tq4_A          156 SATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNV  235 (413)
T ss_dssp             ESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCT
T ss_pred             CCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcC
Confidence            356  9999999999999          999999999999999998888776654432     12    25677889977


Q ss_pred             ch--hh-hCCeE
Q psy1506          60 QY--LN-HVDQI   68 (85)
Q Consensus        60 ~~--~~-~~d~v   68 (85)
                      ..  +. .+|++
T Consensus       236 ~~~~~e~L~d~I  247 (413)
T 1tq4_A          236 CHYDFPVLMDKL  247 (413)
T ss_dssp             TSTTHHHHHHHH
T ss_pred             CccCHHHHHHHH
Confidence            64  43 35555

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.19  E-value=8.8e-14  Score=93.02  Aligned_cols=61  Identities=7%  Similarity=-0.005  Sum_probs=48.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||   |||++++|++||    |++||+.+...+.     .         ++|++..+..+|++ +|++|++.. |
T Consensus       202 SgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~-----~---------ltH~~~~~~~aD~i-vl~~G~iv~~g  259 (305)
T 2v9p_A          202 SIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL-----Y---------LHSRVQTFRFEQPC-TDESGEQPFNI  259 (305)
T ss_dssp             ECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG-----G---------GTTTEEEEECCCCC-CCC---CCCCC
T ss_pred             CHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH-----H---------HhCCHHHHHhCCEE-EEeCCEEEEeC
Confidence            6899999   999999999999    9999998766543     1         28998888889999 999999875 7


Q ss_pred             cccc
Q psy1506          80 WVEE   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      ++++
T Consensus       260 ~~~e  263 (305)
T 2v9p_A          260 TDAD  263 (305)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.14  E-value=7.5e-11  Score=73.91  Aligned_cols=72  Identities=6%  Similarity=-0.098  Sum_probs=52.5

Q ss_pred             CchhHHHHHHHHhcCCC--EEEEecCCCCC--CHHHHHHHHHHHHhhhc-CCcEEEEEecCc--------chh-hhCCeE
Q psy1506           3 GKSSCQLCFEAVYKNAD--IYLLDDPLSAV--DMHVGKHLFEDCISGFL-KDKTRILVTHQL--------QYL-NHVDQI   68 (85)
Q Consensus         3 g~~~~~~laral~~~p~--illlDEP~~~L--D~~~~~~i~~~~~~~~~-~~~tvi~vtH~~--------~~~-~~~d~v   68 (85)
                      ++.++...+.+...+|+  ++++|||++.+  |+.....++..+..... .+.++++++|+.        ..+ ..||++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~v  186 (235)
T 2w0m_A          107 EELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGI  186 (235)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEE
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEE
Confidence            45555666666667999  99999999888  98777777766554433 488999999998        335 459999


Q ss_pred             EEEcCc
Q psy1506          69 VFLNNV   74 (85)
Q Consensus        69 ~~l~~g   74 (85)
                      ++|++.
T Consensus       187 i~l~~~  192 (235)
T 2w0m_A          187 IRFRRM  192 (235)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.07  E-value=6.7e-11  Score=86.92  Aligned_cols=61  Identities=15%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             CCCchhHHHHHHHH--hcCCCEEEEecC---CCCCCHHHH-HHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506           1 MTGKSSCQLCFEAV--YKNADIYLLDDP---LSAVDMHVG-KHLFEDCISGFLKDKTRILVTHQLQYLNH   64 (85)
Q Consensus         1 ~~g~~~~~~laral--~~~p~illlDEP---~~~LD~~~~-~~i~~~~~~~~~~~~tvi~vtH~~~~~~~   64 (85)
                      |+||++++.+++++  +.+|+++|||||   |+++|+... ..+.+.+..   .|.+++++||+.+....
T Consensus       637 S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~  703 (765)
T 1ewq_A          637 STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTAL  703 (765)
T ss_dssp             SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTC
T ss_pred             cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHh
Confidence            57889999999999  999999999999   999998754 345544332   57899999999876543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.01  E-value=1e-10  Score=86.34  Aligned_cols=71  Identities=13%  Similarity=0.086  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEecCcchhhhCCeEEEEcCce
Q psy1506           5 SSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-L-KDKTRILVTHQLQYLNHVDQIVFLNNVS   75 (85)
Q Consensus         5 ~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~   75 (85)
                      +++++.+...+.+|+++|||||++|+|+.....+...+++.+ . .|.+++++||+.+....++++..+.+|+
T Consensus       674 ~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~  746 (800)
T 1wb9_A          674 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH  746 (800)
T ss_dssp             HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence            344555555689999999999999999876666544444443 3 3889999999987655565544444443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.00  E-value=1.2e-09  Score=68.20  Aligned_cols=69  Identities=7%  Similarity=0.013  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHhcC-CCEEEEecCCCCCCHHHH--------HHHHHHHHhhhc-CCcEEEEEecCcc-------------h
Q psy1506           5 SSCQLCFEAVYKN-ADIYLLDDPLSAVDMHVG--------KHLFEDCISGFL-KDKTRILVTHQLQ-------------Y   61 (85)
Q Consensus         5 ~~~~~laral~~~-p~illlDEP~~~LD~~~~--------~~i~~~~~~~~~-~~~tvi~vtH~~~-------------~   61 (85)
                      ++++..+++++.+ |+++++|||++.+|+...        ..++..+..... .+.++++++|...             .
T Consensus        92 ~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~  171 (220)
T 2cvh_A           92 RRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQT  171 (220)
T ss_dssp             HHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcc
Confidence            5688888899986 999999999999987421        223322333223 3789999999754             3


Q ss_pred             h-hhCCeEEEEcC
Q psy1506          62 L-NHVDQIVFLNN   73 (85)
Q Consensus        62 ~-~~~d~v~~l~~   73 (85)
                      + ..||.+++|++
T Consensus       172 ~~~~~d~vi~l~~  184 (220)
T 2cvh_A          172 LGYRCKDILRLDK  184 (220)
T ss_dssp             HHHTSSEEEEEEE
T ss_pred             eeecCcEEEEEEE
Confidence            4 35899999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.99  E-value=1.6e-10  Score=75.52  Aligned_cols=60  Identities=10%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEc
Q psy1506           6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      -+++++++|..+|+++++|||+   |+++....+    +....|.++++++|+.+....+++++.|.
T Consensus        87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~~~g~~vl~t~H~~~~~~~~dri~~l~  146 (261)
T 2eyu_A           87 FADALRAALREDPDVIFVGEMR---DLETVETAL----RAAETGHLVFGTLHTNTAIDTIHRIVDIF  146 (261)
T ss_dssp             HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence            4799999999999999999999   887655443    23346889999999987655677766554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.93  E-value=7.1e-10  Score=69.54  Aligned_cols=68  Identities=13%  Similarity=0.029  Sum_probs=45.4

Q ss_pred             HHHHHHHHhc-------CCCEEEEecCCCCCCHHH------H------HHHHHHHHhhhc-CCcEEEEEecCc----chh
Q psy1506           7 CQLCFEAVYK-------NADIYLLDDPLSAVDMHV------G------KHLFEDCISGFL-KDKTRILVTHQL----QYL   62 (85)
Q Consensus         7 ~~~laral~~-------~p~illlDEP~~~LD~~~------~------~~i~~~~~~~~~-~~~tvi~vtH~~----~~~   62 (85)
                      .+..+++++.       +|+++++|||++++|+..      .      ..++..+.+... .|.|+|++||..    ..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~  187 (231)
T 4a74_A          108 LVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHIL  187 (231)
T ss_dssp             HHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhh
Confidence            3455555555       999999999999998841      1      244444444433 489999999944    446


Q ss_pred             h-hCCeEEEEcCc
Q psy1506          63 N-HVDQIVFLNNV   74 (85)
Q Consensus        63 ~-~~d~v~~l~~g   74 (85)
                      . .+|+++++++|
T Consensus       188 ~~~~d~~l~l~~~  200 (231)
T 4a74_A          188 AHSATLRVYLRKG  200 (231)
T ss_dssp             --CCSEEEEEEEC
T ss_pred             HhhceEEEEEEec
Confidence            5 48999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.90  E-value=1.2e-09  Score=72.66  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------cchhh-hCCeEEEEc
Q psy1506           5 SSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------LQYLN-HVDQIVFLN   72 (85)
Q Consensus         5 ~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~~~~~-~~d~v~~l~   72 (85)
                      +||+++|||+..+|+  +++|| ||+|+|+....   ..+.+  ..+.|++++||.         ++... ....+.++.
T Consensus       207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~--~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~  280 (302)
T 3b9q_A          207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE--VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG  280 (302)
T ss_dssp             HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH--HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEE
T ss_pred             HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH--hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEe
Confidence            689999999999999  99999 99999986432   22211  247899999992         22332 367899998


Q ss_pred             Ccee
Q psy1506          73 NVSK   76 (85)
Q Consensus        73 ~g~i   76 (85)
                      .|+.
T Consensus       281 ~Ge~  284 (302)
T 3b9q_A          281 VGEA  284 (302)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.86  E-value=6.7e-10  Score=75.49  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      +|++||..+|+++++|||+   |.++.+.+    .+....|.++++++|+.+....++|++.|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLA----LTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence            7999999999999999999   66653333    33345689999999999887778888877543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.85  E-value=1.9e-09  Score=70.28  Aligned_cols=58  Identities=5%  Similarity=-0.018  Sum_probs=40.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCC--CCCHHHH---HHHHHHHHhhhc-CCcEEEEEecCcch
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLS--AVDMHVG---KHLFEDCISGFL-KDKTRILVTHQLQY   61 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~--~LD~~~~---~~i~~~~~~~~~-~~~tvi~vtH~~~~   61 (85)
                      |+||.|+   +++++.+|+++++|||++  ++|....   ..++..+..... .|.|+|+++|+...
T Consensus       120 s~g~~~~---i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~  183 (279)
T 1nlf_A          120 APEWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG  183 (279)
T ss_dssp             SHHHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             CHHHHHH---HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence            3566554   468889999999999999  9987533   455544433333 48999999998754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.84  E-value=1.1e-11  Score=77.85  Aligned_cols=61  Identities=11%  Similarity=0.036  Sum_probs=45.9

Q ss_pred             HHhcCCCEEEEecCCCCC----CHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcC
Q psy1506          13 AVYKNADIYLLDDPLSAV----DMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNN   73 (85)
Q Consensus        13 al~~~p~illlDEP~~~L----D~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~   73 (85)
                      +|+.+|++++||||++++    |+...+++.+.+.+... .+.|++++||+++.+ ..||++++|.+
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~  203 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA  203 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence            577899999999999998    66667777655433333 478999999999886 56999988853

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.83  E-value=4.9e-09  Score=71.39  Aligned_cols=66  Identities=11%  Similarity=0.077  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------cchhh-hCCeEEEEc
Q psy1506           5 SSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------LQYLN-HVDQIVFLN   72 (85)
Q Consensus         5 ~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~~~~~-~~d~v~~l~   72 (85)
                      +||+++|||+..+|+  +++|| ||+|+|+....   ..+.  ...+.|+|++||.         ++... ....|.++.
T Consensus       264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~--~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig  337 (359)
T 2og2_A          264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIG  337 (359)
T ss_dssp             HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHH--HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEE
T ss_pred             HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHH--HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEe
Confidence            689999999999999  99999 99999987432   2211  1247899999993         23332 367899998


Q ss_pred             Ccee
Q psy1506          73 NVSK   76 (85)
Q Consensus        73 ~g~i   76 (85)
                      .|+.
T Consensus       338 ~Ge~  341 (359)
T 2og2_A          338 VGEA  341 (359)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.82  E-value=1.2e-08  Score=71.97  Aligned_cols=65  Identities=22%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             HHHHHh-cCCCEEEEecCCCC-----CCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh---------hh-CCeEEEEcC
Q psy1506          10 CFEAVY-KNADIYLLDDPLSA-----VDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL---------NH-VDQIVFLNN   73 (85)
Q Consensus        10 laral~-~~p~illlDEP~~~-----LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~---------~~-~d~v~~l~~   73 (85)
                      +..+|. .+|+++++||||+.     +|+..++.++..+......|.|+|++||+++.+         .. ||++++|++
T Consensus       130 ~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          130 INYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             HHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             HHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            444553 79999999999984     588877777765443334589999999998763         44 999999987


Q ss_pred             c
Q psy1506          74 V   74 (85)
Q Consensus        74 g   74 (85)
                      |
T Consensus       210 ~  210 (525)
T 1tf7_A          210 V  210 (525)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.74  E-value=1.5e-09  Score=71.15  Aligned_cols=54  Identities=7%  Similarity=-0.044  Sum_probs=41.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL   62 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~   62 (85)
                      |+||+||+++|||++.   ++++|||++++|+.. ..++..+    .+..++|++.|..+.+
T Consensus       100 S~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L----~~~~~vI~Vi~K~D~l  153 (270)
T 3sop_A          100 NIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHL----SKVVNIIPVIAKADTM  153 (270)
T ss_dssp             CTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHH----HTTSEEEEEETTGGGS
T ss_pred             Ccccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHH----HhcCcEEEEEeccccC
Confidence            7899999999999876   999999999999975 3333332    2227888888765543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.68  E-value=4.9e-10  Score=77.90  Aligned_cols=72  Identities=8%  Similarity=-0.192  Sum_probs=54.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---C-Cc-----EEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---K-DK-----TRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~-~~-----tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+|| ||+++|   +.+|++      |+|+|+.....+.+.+.+...   + |.     |++++|||++ ...+|++++|
T Consensus       260 S~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l  328 (438)
T 2dpy_A          260 AMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAI  328 (438)
T ss_dssp             HHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHH
T ss_pred             HHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEE
Confidence            3688 999998   889988      999999988877655433333   2 54     8999999998 5568999999


Q ss_pred             cCceeec-Ccccc
Q psy1506          72 NNVSKTS-GWVEE   83 (85)
Q Consensus        72 ~~g~i~~-g~~~~   83 (85)
                      .+|++.. +++++
T Consensus       329 ~dG~Ivl~~~~~~  341 (438)
T 2dpy_A          329 LDGHIVLSRRLAE  341 (438)
T ss_dssp             SSEEEEECHHHHH
T ss_pred             eCcEEEEeCCHHH
Confidence            9998764 55443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.68  E-value=1.5e-08  Score=68.51  Aligned_cols=58  Identities=9%  Similarity=-0.078  Sum_probs=42.8

Q ss_pred             CchhHHHHHHHHh-------cCCCEEEEecCCCCCCHHH------------HHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506           3 GKSSCQLCFEAVY-------KNADIYLLDDPLSAVDMHV------------GKHLFEDCISGFL-KDKTRILVTHQLQ   60 (85)
Q Consensus         3 g~~~~~~laral~-------~~p~illlDEP~~~LD~~~------------~~~i~~~~~~~~~-~~~tvi~vtH~~~   60 (85)
                      +|.|++..+++++       .+|+++++||||+++|+..            ...++..+..... .+.|+|+++|...
T Consensus       210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            5788999999999       6899999999999999852            1233333333223 4789999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.60  E-value=5.3e-11  Score=75.57  Aligned_cols=61  Identities=8%  Similarity=-0.055  Sum_probs=46.8

Q ss_pred             CCCchhHHHH-----HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-------CCcEEEEEecCcch
Q psy1506           1 MTGKSSCQLC-----FEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-------KDKTRILVTHQLQY   61 (85)
Q Consensus         1 ~~g~~~~~~l-----aral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-------~~~tvi~vtH~~~~   61 (85)
                      |+||+||+++     +|+++.+|++++||||++++|..+...+.+.+.....       .....|+++|+++.
T Consensus       124 sggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~e  196 (218)
T 1z6g_A          124 NGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTL  196 (218)
T ss_dssp             HHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHH
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHH
Confidence            5799999999     8999999999999999999998776666554432211       34566777777654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.58  E-value=2e-09  Score=72.94  Aligned_cols=71  Identities=11%  Similarity=-0.086  Sum_probs=54.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---CCc-----EEEEEecCcchhhhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---KDK-----TRILVTHQLQYLNHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~~~-----tvi~vtH~~~~~~~~d~v~~l~   72 (85)
                      |.|| |++++|   +.+|++      |+|+|+.....+.+. ++...   +|.     |++++|||++ ...||+++++.
T Consensus       173 S~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~l-ler~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~  240 (347)
T 2obl_A          173 ARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKL-LERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSIL  240 (347)
T ss_dssp             HHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHH-HTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHC
T ss_pred             HHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHH-HHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEee
Confidence            3588 899998   578887      999999987777654 44432   366     8999999998 45689999999


Q ss_pred             Cceeec-Ccccc
Q psy1506          73 NVSKTS-GWVEE   83 (85)
Q Consensus        73 ~g~i~~-g~~~~   83 (85)
                      +|++.. +++++
T Consensus       241 dG~Ivl~~~l~~  252 (347)
T 2obl_A          241 DGHIVLTRELAE  252 (347)
T ss_dssp             SEEEEBCHHHHT
T ss_pred             CcEEEEeCCHHH
Confidence            998864 55443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.50  E-value=2.8e-09  Score=71.21  Aligned_cols=32  Identities=16%  Similarity=-0.006  Sum_probs=30.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCH
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDM   32 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~   32 (85)
                      |+||+||+++|++++.+|+++|+|||+..+|+
T Consensus       178 S~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          178 SHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             ETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             ChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            68999999999999999999999999999975

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.49  E-value=1.4e-09  Score=68.10  Aligned_cols=54  Identities=9%  Similarity=0.020  Sum_probs=34.6

Q ss_pred             CCchhHH-HHHH---HHhcCCCEEEEec--CCCCCCHHHHHHHHHHHHhhhcCCcEEE----EEecCc
Q psy1506           2 TGKSSCQ-LCFE---AVYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGFLKDKTRI----LVTHQL   59 (85)
Q Consensus         2 ~g~~~~~-~lar---al~~~p~illlDE--P~~~LD~~~~~~i~~~~~~~~~~~~tvi----~vtH~~   59 (85)
                      +||++++ ++++   |+..+|+++|+||  |+...|....+.+. .++.   +..++|    .++|+.
T Consensus        86 ~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~-~~l~---~~~~~ilgti~vsh~~  149 (189)
T 2i3b_A           86 SFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR-QTLS---TPGTIILGTIPVPKGK  149 (189)
T ss_dssp             HHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH-HHHH---CSSCCEEEECCCCCSS
T ss_pred             HHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH-HHHh---CCCcEEEEEeecCCCC
Confidence            3566665 3344   5789999999999  89889987554443 3332   333444    344876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.43  E-value=6.3e-08  Score=59.84  Aligned_cols=49  Identities=8%  Similarity=-0.052  Sum_probs=40.5

Q ss_pred             CCCchhH-HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC
Q psy1506           1 MTGKSSC-QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD   49 (85)
Q Consensus         1 ~~g~~~~-~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~   49 (85)
                      ++||+|+ +..+++++.+|+.+++|||+|++|..+...+++.+.+...++
T Consensus       151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            4588998 899999999999999999999999999999887765554444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.40  E-value=1.1e-06  Score=53.51  Aligned_cols=47  Identities=17%  Similarity=0.060  Sum_probs=35.0

Q ss_pred             HHhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506          13 AVYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILVTHQL   59 (85)
Q Consensus        13 al~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~   59 (85)
                      ..+.+|+++++|||++ ++|+.....++..+-....++.++|++||..
T Consensus        96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            3456999999999985 8999866666544333334788999999965

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.31  E-value=1e-07  Score=63.17  Aligned_cols=53  Identities=2%  Similarity=-0.082  Sum_probs=38.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCC-CCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSA-VDMHVGKHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~-LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      |+||+||+.+|||++    ++++||||++ ||+... .++..+ . ...+.++|+.+||+.
T Consensus       115 sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l-~-~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          115 SGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAI-H-NKVNIVPVIAKADTL  168 (301)
T ss_dssp             TSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHH-T-TTSCEEEEECCGGGS
T ss_pred             CHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHH-H-hcCCEEEEEEeCCCC
Confidence            689999999988885    9999999985 999752 232221 1 112678888899873

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.22  E-value=2.9e-06  Score=53.35  Aligned_cols=59  Identities=3%  Similarity=0.009  Sum_probs=36.1

Q ss_pred             cCCCEEEEecCCCCCCHH-------H-----HHHHHHHHHhhhc-CCcEEEEEecCcch-------------------hh
Q psy1506          16 KNADIYLLDDPLSAVDMH-------V-----GKHLFEDCISGFL-KDKTRILVTHQLQY-------------------LN   63 (85)
Q Consensus        16 ~~p~illlDEP~~~LD~~-------~-----~~~i~~~~~~~~~-~~~tvi~vtH~~~~-------------------~~   63 (85)
                      .+|+++++|||++.+|+.       .     ...++..+..... .+.++|+++|....                   +.
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  197 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA  197 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence            589999999999999874       2     1223333333333 38899999995432                   22


Q ss_pred             -hCCeEEEEcCc
Q psy1506          64 -HVDQIVFLNNV   74 (85)
Q Consensus        64 -~~d~v~~l~~g   74 (85)
                       .||.+++|+++
T Consensus       198 ~~~d~vi~l~~~  209 (243)
T 1n0w_A          198 HASTTRLYLRKG  209 (243)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             hcCcEEEEEEEc
Confidence             57999999854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.11  E-value=8.9e-07  Score=60.28  Aligned_cols=56  Identities=11%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEE
Q psy1506           7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIV   69 (85)
Q Consensus         7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~   69 (85)
                      +.+++++|..+|+++++|||+   |++.....    ++....|.+++.++|+.+....+++++
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~----l~~~~~g~~vi~t~H~~~~~~~~~rl~  254 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVETA----LRAAETGHLVFGTLHTNTAIDTIHRIV  254 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHHH----HHHHhcCCEEEEEECcchHHHHHHHHH
Confidence            568999999999999999999   77643332    233445789999999866444455543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.08  E-value=7e-06  Score=54.40  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=34.9

Q ss_pred             hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506          15 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY   61 (85)
Q Consensus        15 ~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~   61 (85)
                      ..+|+++++|||++ ||+...+.+++. ++...++.++|++||++..
T Consensus       132 ~~~~~vlilDE~~~-L~~~~~~~L~~~-le~~~~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          132 AHRYKCVIINEANS-LTKDAQAALRRT-MEKYSKNIRLIMVCDSMSP  176 (354)
T ss_dssp             --CCEEEEEECTTS-SCHHHHHHHHHH-HHHSTTTEEEEEEESCSCS
T ss_pred             CCCCeEEEEeCccc-cCHHHHHHHHHH-HHhhcCCCEEEEEeCCHHH
Confidence            56899999999999 999877777654 4444567899999998754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.07  E-value=1.3e-05  Score=57.66  Aligned_cols=68  Identities=13%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             hcCCCEEEEecC------CCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecCcchh--------hh-----CCeEEEEcC
Q psy1506          15 YKNADIYLLDDP------LSAVDMHVGKHLFEDCISGFLK--DKTRILVTHQLQYL--------NH-----VDQIVFLNN   73 (85)
Q Consensus        15 ~~~p~illlDEP------~~~LD~~~~~~i~~~~~~~~~~--~~tvi~vtH~~~~~--------~~-----~d~v~~l~~   73 (85)
                      ...|+++++|||      |+++|+.....+...+.....+  +.++++++|+.+..        ..     ...+.++.+
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence            356999999999      9999999877777654443333  56888899987522        11     245788887


Q ss_pred             ceeec-Cccc
Q psy1506          74 VSKTS-GWVE   82 (85)
Q Consensus        74 g~i~~-g~~~   82 (85)
                      +.... |+.+
T Consensus       224 ~Dlv~~g~~~  233 (608)
T 3szr_A          224 PDLVDKGTED  233 (608)
T ss_dssp             GGGSSSSSTT
T ss_pred             hhhcCcccHH
Confidence            76553 5443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.06  E-value=5.3e-06  Score=49.75  Aligned_cols=44  Identities=14%  Similarity=-0.054  Sum_probs=29.9

Q ss_pred             HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcE-EEEEecC
Q psy1506          14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKT-RILVTHQ   58 (85)
Q Consensus        14 l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~t-vi~vtH~   58 (85)
                      ++.+|+++++|||++ ++....+.+++.+-....+|.+ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            456899999999998 5554456665543333345677 8888884

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.00  E-value=1.4e-06  Score=60.34  Aligned_cols=53  Identities=4%  Similarity=-0.067  Sum_probs=36.6

Q ss_pred             CchhHHHHHHHHhcCCC---EEEEecCC-CCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506           3 GKSSCQLCFEAVYKNAD---IYLLDDPL-SAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus         3 g~~~~~~laral~~~p~---illlDEP~-~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      +++||+++||+++.+|+   ++++|||| +++|+.. ..++..    ...+.++|+|.|..+
T Consensus       122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~----L~~~v~iIlVinK~D  178 (418)
T 2qag_C          122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKR----LHEKVNIIPLIAKAD  178 (418)
T ss_dssp             HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHH----HTTTSEEEEEEESTT
T ss_pred             HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHH----HhccCcEEEEEEccc
Confidence            45678889999999999   99999999 6999864 233332    334677888877544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.96  E-value=1.8e-09  Score=67.34  Aligned_cols=56  Identities=13%  Similarity=0.048  Sum_probs=44.6

Q ss_pred             chhHHHHHHHHhcCCCEEEEecCCCC-------CCHHHHHHHHHHHHhhh-cCCcEEEEEecCc
Q psy1506           4 KSSCQLCFEAVYKNADIYLLDDPLSA-------VDMHVGKHLFEDCISGF-LKDKTRILVTHQL   59 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlDEP~~~-------LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~~   59 (85)
                      |+||++++++++.+|+++++|||+++       ||+.....+.+.+.+.. .+|.|++.++|+.
T Consensus        98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A           98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            35788999999999999999999999       89887776766544433 3578888889874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.91  E-value=5.3e-06  Score=55.19  Aligned_cols=51  Identities=16%  Similarity=0.016  Sum_probs=34.0

Q ss_pred             CchhHHHHHHHHhcCCC--EEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506           3 GKSSCQLCFEAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQ   60 (85)
Q Consensus         3 g~~~~~~laral~~~p~--illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~   60 (85)
                      .++||+++|||+..+|+  ++.|| |+++.+      +...+..... .+.|++++||+..
T Consensus       206 Ls~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          206 LKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCCcEEEEECCcc
Confidence            35789999999999999  55556 555543      3332222222 2789999999743

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.87  E-value=4.7e-08  Score=60.03  Aligned_cols=75  Identities=11%  Similarity=-0.039  Sum_probs=48.4

Q ss_pred             CCchhHHHHHH------HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC-cchhh-hCCeEEEEcC
Q psy1506           2 TGKSSCQLCFE------AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ-LQYLN-HVDQIVFLNN   73 (85)
Q Consensus         2 ~g~~~~~~lar------al~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~-~~~~~-~~d~v~~l~~   73 (85)
                      +||+|++.++.      ++..+|+...+|+   ++|+...+. ++.+......+.++|.+||. ++.+. .|++|+  ++
T Consensus        97 ~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~  170 (189)
T 2bdt_A           97 KVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TN  170 (189)
T ss_dssp             HCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HC
T ss_pred             cccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hC
Confidence            46677766666      7788888777773   789876666 55544333446789999998 87764 588888  88


Q ss_pred             ceeec-Cccc
Q psy1506          74 VSKTS-GWVE   82 (85)
Q Consensus        74 g~i~~-g~~~   82 (85)
                      |++.. |+++
T Consensus       171 g~~~~~~~~~  180 (189)
T 2bdt_A          171 PRFIFCMAGD  180 (189)
T ss_dssp             GGGSCC----
T ss_pred             CcEEEeecCC
Confidence            98864 6654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.80  E-value=1.8e-06  Score=55.20  Aligned_cols=48  Identities=15%  Similarity=-0.045  Sum_probs=37.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQL   59 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~   59 (85)
                      |+||+||+.+ ++++.+|+++++|||....+..    +    .. . .+.++++++|+.
T Consensus       118 s~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~-~-~~~~i~v~th~~  165 (245)
T 2jeo_A          118 DFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RD-M-FHLRLFVDTDSD  165 (245)
T ss_dssp             ETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HT-T-CSEEEEEECCHH
T ss_pred             cccccCccCc-eEEecCCCEEEEeCccccccHH----H----HH-h-cCeEEEEECCHH
Confidence            5799999987 6888899999999998887763    1    11 1 267999999974

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.74  E-value=1.8e-06  Score=58.26  Aligned_cols=69  Identities=6%  Similarity=-0.145  Sum_probs=42.6

Q ss_pred             CchhHHHHHHHHh-cCCCEEEEec---CC------CCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEE
Q psy1506           3 GKSSCQLCFEAVY-KNADIYLLDD---PL------SAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         3 g~~~~~~laral~-~~p~illlDE---P~------~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |++++..+++++. .+|++++|||   |+      .++|+..+..+...+.+... .+.++++++|.-.....++++..+
T Consensus       262 ~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i  341 (365)
T 1lw7_A          262 EGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVI  341 (365)
T ss_dssp             HSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence            5567777777764 6999999999   66      57898877777665543333 378899998753222334444444

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.73  E-value=3.9e-05  Score=52.82  Aligned_cols=59  Identities=2%  Similarity=-0.035  Sum_probs=38.5

Q ss_pred             cCCCEEEEecCCCCCCHHHH------------HHHHHHHHhhhc-CCcEEEEEecCc-------------------chhh
Q psy1506          16 KNADIYLLDDPLSAVDMHVG------------KHLFEDCISGFL-KDKTRILVTHQL-------------------QYLN   63 (85)
Q Consensus        16 ~~p~illlDEP~~~LD~~~~------------~~i~~~~~~~~~-~~~tvi~vtH~~-------------------~~~~   63 (85)
                      .+|+++++|||++.+|....            ..++..+..... .+.|+|+++|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999986432            334443333333 389999999972                   1234


Q ss_pred             h-CCeEEEEcCc
Q psy1506          64 H-VDQIVFLNNV   74 (85)
Q Consensus        64 ~-~d~v~~l~~g   74 (85)
                      + +|.+++|+++
T Consensus       352 ~~ad~vl~L~~~  363 (400)
T 3lda_A          352 YSSTTRLGFKKG  363 (400)
T ss_dssp             HHCSEEEEEEEC
T ss_pred             HhcceEEEEEec
Confidence            3 7888888764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.68  E-value=7.1e-07  Score=59.00  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=27.4

Q ss_pred             CCCchhHHHHH--HHHhcCCCEEEEecCCCCCCHH
Q psy1506           1 MTGKSSCQLCF--EAVYKNADIYLLDDPLSAVDMH   33 (85)
Q Consensus         1 ~~g~~~~~~la--ral~~~p~illlDEP~~~LD~~   33 (85)
                      |+||+||+.+|  +++  +|+|+|+|||++++|+.
T Consensus       136 sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          136 FKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             HHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred             CCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence            57999999987  555  89999999999999985

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.55  E-value=0.00056  Score=42.73  Aligned_cols=58  Identities=17%  Similarity=0.110  Sum_probs=40.7

Q ss_pred             cCCCEEEEecCCCCC--CHHHHHHHHHHHHhhh-cCCcEEEEEecCcch--------h-hhCCeEEEEcC
Q psy1506          16 KNADIYLLDDPLSAV--DMHVGKHLFEDCISGF-LKDKTRILVTHQLQY--------L-NHVDQIVFLNN   73 (85)
Q Consensus        16 ~~p~illlDEP~~~L--D~~~~~~i~~~~~~~~-~~~~tvi~vtH~~~~--------~-~~~d~v~~l~~   73 (85)
                      .+|+++++|+|++.+  |+......+..+.+.. ..|.++++++|....        + ..+|.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            579999999999887  5544445555554443 357899999997543        2 45899999864

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.34  E-value=6.3e-05  Score=55.43  Aligned_cols=65  Identities=11%  Similarity=0.062  Sum_probs=47.4

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEE-EecCcchh-hhCC
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRIL-VTHQLQYL-NHVD   66 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~-vtH~~~~~-~~~d   66 (85)
                      .|+.+|..+++.++.+++++++|||.. ++|......++..+.....+..++++ .||+.+.+ ..++
T Consensus       193 ~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~  260 (773)
T 2xau_A          193 DGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN  260 (773)
T ss_dssp             HHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred             HHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence            588999999999999999999999996 99977655555554433333456666 48887654 3443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.20  E-value=4.5e-06  Score=51.35  Aligned_cols=49  Identities=6%  Similarity=-0.050  Sum_probs=31.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEE-------EEecCCC---CCCHHHHHHHHHHHHhhhcCC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIY-------LLDDPLS---AVDMHVGKHLFEDCISGFLKD   49 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~il-------llDEP~~---~LD~~~~~~i~~~~~~~~~~~   49 (85)
                      |+||+||+++|||++.+|++.       .=|.|..   .+|....+.+.+.+.+...+|
T Consensus       105 SgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~  163 (171)
T 2f1r_A          105 SKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREG  163 (171)
T ss_dssp             GGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred             CCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence            689999999999999999874       2244421   233333455655554555554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.13  E-value=1.8e-05  Score=52.58  Aligned_cols=48  Identities=15%  Similarity=0.139  Sum_probs=35.3

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      |+||+||+..+++++++|+++  |||         +.+.+. ++....+.+++++||+..
T Consensus       143 s~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~-l~~l~~~~~ii~~sh~~~  190 (318)
T 1nij_A          143 TIAQSQVGYADRILLTKTDVA--GEA---------EKLHER-LARINARAPVYTVTHGDI  190 (318)
T ss_dssp             HHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHH-HHHHCSSSCEEECCSSCC
T ss_pred             hHHHHHHHhCCEEEEECcccC--CHH---------HHHHHH-HHHhCCCCeEEEecccCC
Confidence            468999998888888899887  888         233333 333446789999999643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.12  E-value=0.00086  Score=42.45  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=34.8

Q ss_pred             HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhh
Q psy1506          11 FEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNH   64 (85)
Q Consensus        11 aral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~   64 (85)
                      .+.++..++++|||     ||+...+.+.+.+    .++.+|++++|+++.+..
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l----~~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKM----PHARSIFILPPSKIELDR  145 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHC----TTCEEEEEECSSHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHc----cCCEEEEEECCCHHHHHH
Confidence            44566789999999     9999877776532    257899999999887643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.96  E-value=0.00024  Score=49.16  Aligned_cols=52  Identities=12%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTH   57 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH   57 (85)
                      ++|++|++.++++|...|.++++    +.+|.... ..+..+..... .+.+++++|-
T Consensus       254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred             HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence            36899999999999999999999    99998755 44444444433 4667777763

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.93  E-value=0.0051  Score=41.47  Aligned_cols=70  Identities=10%  Similarity=0.127  Sum_probs=42.6

Q ss_pred             hHHHHHHHHhcC--CCEEEEecCCCCCC----------H---HHHHHH---HHHHHhhhc-CCcEEEEEecCcc------
Q psy1506           6 SCQLCFEAVYKN--ADIYLLDDPLSAVD----------M---HVGKHL---FEDCISGFL-KDKTRILVTHQLQ------   60 (85)
Q Consensus         6 ~~~~laral~~~--p~illlDEP~~~LD----------~---~~~~~i---~~~~~~~~~-~~~tvi~vtH~~~------   60 (85)
                      +-+.++++++.+  |+++++|+|++.+.          +   ...+.+   +..+..... .+.++|+++|-..      
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            345677877754  99999999999883          2   111112   222222222 4789999999542      


Q ss_pred             ----------hhh-hCCeEEEEcCce
Q psy1506          61 ----------YLN-HVDQIVFLNNVS   75 (85)
Q Consensus        61 ----------~~~-~~d~v~~l~~g~   75 (85)
                                .+. .++.++.++++.
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~  231 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIE  231 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEE
T ss_pred             CCCcccCCchHhhhccceEEEEEEee
Confidence                      133 478888887654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.89  E-value=0.0052  Score=40.43  Aligned_cols=51  Identities=14%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHhcCCCEEEEecC-CCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q psy1506           5 SSCQLCFEAVYKNADIYLLDDP-LSAVDMHVGKHLFEDCISGFLKDKTRILVT   56 (85)
Q Consensus         5 ~~~~~laral~~~p~illlDEP-~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt   56 (85)
                      .+|.+++++...+++++|+||| +.++|......+.. +........+++++.
T Consensus       168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVLGPDEVLLVLD  219 (295)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHHCCSEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-HhhhcCCCEEEEEEe
Confidence            3577888888899999999999 99999876555543 233333444544443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.88  E-value=0.0039  Score=43.14  Aligned_cols=68  Identities=7%  Similarity=-0.020  Sum_probs=43.4

Q ss_pred             HHHHHHHh--cCCCEEEEecCCCCCCHH--------HHHHHHHHHHhhhc-CCcEEEEEec---------C--cc-----
Q psy1506           8 QLCFEAVY--KNADIYLLDDPLSAVDMH--------VGKHLFEDCISGFL-KDKTRILVTH---------Q--LQ-----   60 (85)
Q Consensus         8 ~~laral~--~~p~illlDEP~~~LD~~--------~~~~i~~~~~~~~~-~~~tvi~vtH---------~--~~-----   60 (85)
                      ...+|.+.  .+|+++++|+++...+..        ....+...+..... .+.++|+++|         +  +.     
T Consensus       302 ~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr  381 (454)
T 2r6a_A          302 RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIR  381 (454)
T ss_dssp             HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhh
Confidence            45677776  689999999999877431        11233333222222 3789999999         2  22     


Q ss_pred             ---hhh-hCCeEEEEcCce
Q psy1506          61 ---YLN-HVDQIVFLNNVS   75 (85)
Q Consensus        61 ---~~~-~~d~v~~l~~g~   75 (85)
                         .+. .+|.+++|+++.
T Consensus       382 ~Sg~ie~~aD~vi~l~r~~  400 (454)
T 2r6a_A          382 ESGSIEQDADIVAFLYRDD  400 (454)
T ss_dssp             TTCSHHHHCSEEEEEEETT
T ss_pred             ccchhHhhCCEEEEEeccc
Confidence               333 489999997654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.78  E-value=9.4e-05  Score=47.03  Aligned_cols=31  Identities=10%  Similarity=0.163  Sum_probs=25.3

Q ss_pred             HHH-hcCCCEEEEe----cCCCCCCHHHHHHHHHHH
Q psy1506          12 EAV-YKNADIYLLD----DPLSAVDMHVGKHLFEDC   42 (85)
Q Consensus        12 ral-~~~p~illlD----EP~~~LD~~~~~~i~~~~   42 (85)
                      +|+ +.+|++++||    |||+++|+.+.+.+.+.+
T Consensus       158 ~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l  193 (246)
T 2bbw_A          158 YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARL  193 (246)
T ss_dssp             EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH
T ss_pred             cccccCCCcccccccccccccccCCCCcHHHHHHHH
Confidence            455 8999999999    999999998777665544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.77  E-value=0.0023  Score=44.94  Aligned_cols=58  Identities=9%  Similarity=0.014  Sum_probs=37.5

Q ss_pred             CchhHHHHHHHHhcCCCEEEEecCCC----------CCCHHHHHHHHHHHHhhh-----cCCcEEEEEecCcch
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDDPLS----------AVDMHVGKHLFEDCISGF-----LKDKTRILVTHQLQY   61 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDEP~~----------~LD~~~~~~i~~~~~~~~-----~~~~tvi~vtH~~~~   61 (85)
                      +++.|-.+++|....|.++++||+.+          +.|....+ .+..++...     ..+..+|.+||+++.
T Consensus        94 ~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~-~l~~LL~~ld~~~~~~~viVIaaTn~~~~  166 (476)
T 2ce7_A           94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ-TLNQLLVEMDGFDSKEGIIVMAATNRPDI  166 (476)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHH-HHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHH-HHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence            56788899999999999999999943          45554322 333333322     235678888998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.52  E-value=0.00094  Score=44.90  Aligned_cols=27  Identities=7%  Similarity=0.122  Sum_probs=22.6

Q ss_pred             CCCchhHHHHHHHH---hc--CCCEEEEecCC
Q psy1506           1 MTGKSSCQLCFEAV---YK--NADIYLLDDPL   27 (85)
Q Consensus         1 ~~g~~~~~~laral---~~--~p~illlDEP~   27 (85)
                      |.||+||+.++++|   ..  +++++++|||+
T Consensus       298 sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          298 LGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ---CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            45899999999999   76  89999999996

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.51  E-value=0.00076  Score=40.81  Aligned_cols=33  Identities=12%  Similarity=0.092  Sum_probs=26.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFED   41 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~   41 (85)
                      +.|++|++.++|++.++|+++        +|+...+.+++.
T Consensus       111 s~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~  143 (191)
T 1zp6_A          111 VLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ  143 (191)
T ss_dssp             EEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence            468999999999999999876        577665555543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.30  E-value=0.0006  Score=48.40  Aligned_cols=50  Identities=12%  Similarity=0.027  Sum_probs=32.4

Q ss_pred             HHHHhcCCC-EEEEecCCCCCCHHH--HHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506          11 FEAVYKNAD-IYLLDDPLSAVDMHV--GKHLFEDCISGFL-KDKTRILVTHQLQ   60 (85)
Q Consensus        11 aral~~~p~-illlDEP~~~LD~~~--~~~i~~~~~~~~~-~~~tvi~vtH~~~   60 (85)
                      ++++...|. ++++||+++.++...  ....+..+.+.-+ -|.++|++||++.
T Consensus       290 a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          290 HPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             ccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            444566787 899999999887431  2222223323322 3789999999986

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.99  E-value=0.052  Score=35.97  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=24.9

Q ss_pred             CCCchhHH---HHHHHHhcCCCEEEEecCCC
Q psy1506           1 MTGKSSCQ---LCFEAVYKNADIYLLDDPLS   28 (85)
Q Consensus         1 ~~g~~~~~---~laral~~~p~illlDEP~~   28 (85)
                      ++|+.+++   ++++++..+|+++|+|+|..
T Consensus       167 s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          167 EGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             CccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            36788998   89999999999999999975

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.99  E-value=0.0063  Score=36.90  Aligned_cols=36  Identities=14%  Similarity=0.115  Sum_probs=31.5

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q psy1506           7 CQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS   44 (85)
Q Consensus         7 ~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~   44 (85)
                      ....|++++.+|++.++|  +|++|..+...+++.+.+
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            467899999999999999  999999998888876654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.83  E-value=0.026  Score=39.78  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             CCCchhHHHHHHHHh------c-----------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh
Q psy1506           1 MTGKSSCQLCFEAVY------K-----------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN   63 (85)
Q Consensus         1 ~~g~~~~~~laral~------~-----------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~   63 (85)
                      ||||+|-..+|.+..      .           .-.+++|||+ +-+|.+..+..++.+ +.  =|.-+|+++=+ ...+
T Consensus       381 SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~-~~--lglQliiatP~-~i~p  455 (483)
T 3euj_A          381 STGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELC-ER--LDMQLLIAAPE-NISP  455 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHH-HH--TTCEEEEEESS-SCCC
T ss_pred             CCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHH-HH--cCCEEEEECcc-hhhh
Confidence            789998544443322      1           2358999999 999999877776543 32  26666666655 3345


Q ss_pred             hCCeEEEEc
Q psy1506          64 HVDQIVFLN   72 (85)
Q Consensus        64 ~~d~v~~l~   72 (85)
                      +.|.++.+-
T Consensus       456 ~v~~~~~~~  464 (483)
T 3euj_A          456 ERGTTYKLV  464 (483)
T ss_dssp             SSSEEEECC
T ss_pred             ccCceEEEE
Confidence            677777664

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.56  E-value=0.034  Score=38.36  Aligned_cols=43  Identities=21%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             CCCEEEEecCCCCCCH-HHHHHHHHHHHhhhcCCcEEEEEecCc
Q psy1506          17 NADIYLLDDPLSAVDM-HVGKHLFEDCISGFLKDKTRILVTHQL   59 (85)
Q Consensus        17 ~p~illlDEP~~~LD~-~~~~~i~~~~~~~~~~~~tvi~vtH~~   59 (85)
                      +|+++++||+..-.+. ...+.++..+-.....+..+|++||+.
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            8999999999887763 345556544333344678899999974

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.34  E-value=2.5e-06  Score=55.53  Aligned_cols=57  Identities=11%  Similarity=0.133  Sum_probs=42.4

Q ss_pred             CCCchhHHHHHHHHhcCCCE--EEEecCCCCCCHHHH--------HHHHHHHHhhhcCCcEEEEEecCc
Q psy1506           1 MTGKSSCQLCFEAVYKNADI--YLLDDPLSAVDMHVG--------KHLFEDCISGFLKDKTRILVTHQL   59 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~i--lllDEP~~~LD~~~~--------~~i~~~~~~~~~~~~tvi~vtH~~   59 (85)
                      ++|  ||+++++++..+|++  +|+||+++++|....        +.+.+..+....+|.|.+.+.|+.
T Consensus       174 ~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~  240 (261)
T 2eyu_A          174 IGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA  240 (261)
T ss_dssp             SSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             CCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence            356  889999999999999  999999999987521        223444555566788777666654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.31  E-value=0.011  Score=41.21  Aligned_cols=51  Identities=6%  Similarity=-0.018  Sum_probs=40.2

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506           8 QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQ   58 (85)
Q Consensus         8 ~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~   58 (85)
                      +.++++|..+++++++|+|+..|.+.....++..+...+. .|.+|+.++.+
T Consensus       167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            6889999999999999999999998877777666554343 57888888754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.29  E-value=0.014  Score=38.36  Aligned_cols=52  Identities=8%  Similarity=0.181  Sum_probs=30.1

Q ss_pred             HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc---CCcEEEEE--ecCcchhh-hCCeE
Q psy1506          14 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL---KDKTRILV--THQLQYLN-HVDQI   68 (85)
Q Consensus        14 l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~---~~~tvi~v--tH~~~~~~-~~d~v   68 (85)
                      .+.+|+++|+|  |+|+|+.....+ ..+.....   ...+++++  +|....+. .++++
T Consensus       179 ~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~  236 (296)
T 2px0_A          179 LFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSFLVLSATAKYEDMKHIVKRF  236 (296)
T ss_dssp             HGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred             HhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence            44899999999  889998644333 33333322   22234444  78765543 34443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.29  E-value=0.019  Score=38.38  Aligned_cols=54  Identities=24%  Similarity=0.316  Sum_probs=35.8

Q ss_pred             chhHHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEe--cCc
Q psy1506           4 KSSCQLCFEAVYKNADIYLLD-DPLSAVDMHVGKHLFEDCISGFLKDKTRILVT--HQL   59 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlD-EP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vt--H~~   59 (85)
                      ++|++. +.+...++-++++| +|..++|......++..+.... .+.+++++.  ||+
T Consensus       236 ~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl  292 (357)
T 2e87_A          236 EKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDV  292 (357)
T ss_dssp             HHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTT
T ss_pred             HHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECccc
Confidence            344443 33444666789999 9999999887666666544332 367777877  665

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.28  E-value=3.6e-06  Score=57.25  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             CCCchhHHHHHHHHhcCCCE--EEEecCCCCCCHHH---H-----HHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506           1 MTGKSSCQLCFEAVYKNADI--YLLDDPLSAVDMHV---G-----KHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~i--lllDEP~~~LD~~~---~-----~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      ++|  ||+++++++..+|++  +|+||+++++|...   .     +.+.+..+....+|.|.+.+.|+..
T Consensus       285 ~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~  352 (372)
T 2ewv_A          285 IGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS  352 (372)
T ss_dssp             SSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred             CCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence            357  789999999999999  99999999998541   1     2234445555667888777777764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.27  E-value=7.4e-05  Score=46.34  Aligned_cols=54  Identities=9%  Similarity=0.142  Sum_probs=34.0

Q ss_pred             HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcC
Q psy1506          13 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus        13 al~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      +++.+|++.+|||+++++|..+.+.+.+.+..... +   +.+.|  .. ..+|.+++.++
T Consensus       120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~-~---~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART-D---MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH-H---TTGGG--ST-TTCSEEEECSS
T ss_pred             EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H---HHHhh--cc-CCceEEEECCC
Confidence            56777888888999999998877766654432221 1   12334  11 45787777653

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.25  E-value=0.038  Score=34.67  Aligned_cols=66  Identities=17%  Similarity=0.104  Sum_probs=43.3

Q ss_pred             HHHHHHHh--cCCCEEEEecCCCCC--CHHHHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcCc
Q psy1506           8 QLCFEAVY--KNADIYLLDDPLSAV--DMHVGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNNV   74 (85)
Q Consensus         8 ~~laral~--~~p~illlDEP~~~L--D~~~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~g   74 (85)
                      ...++..+  .+.+++||||...++  +.-....+++. +...-++..+|+++++.. . +..+|.|.-|+.-
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~-l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v  180 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISA-LNARPGHQTVIITGRGCHRDILDLADTVSELRPV  180 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHH-HHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHH-HHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence            44455566  568999999997631  21223456654 334445678999998763 3 4679999999764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.72  E-value=2.9e-05  Score=53.39  Aligned_cols=60  Identities=12%  Similarity=0.084  Sum_probs=44.0

Q ss_pred             CC--CEEEEecCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEecCcchh-hhCCeEE-EEcCc-eeec
Q psy1506          17 NA--DIYLLDDPLSAVDMHVGKHLFEDCISG-FLKDKTRILVTHQLQYL-NHVDQIV-FLNNV-SKTS   78 (85)
Q Consensus        17 ~p--~illlDEP~~~LD~~~~~~i~~~~~~~-~~~~~tvi~vtH~~~~~-~~~d~v~-~l~~g-~i~~   78 (85)
                      +|  ++.++|||+.++|+...++.+..+... ...|.|++  +|..... ..|+++. +|++| ++..
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~  204 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR  204 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee
Confidence            78  888999999999998877776554443 33456643  9988765 4588988 88888 6653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.53  E-value=0.035  Score=33.56  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhh
Q psy1506           8 QLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG   45 (85)
Q Consensus         8 ~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~   45 (85)
                      ...|++++.+|++.++|  +|++|..+...+++.+.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            46789999999999999  9999999988888776544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.31  E-value=0.011  Score=39.80  Aligned_cols=65  Identities=9%  Similarity=0.040  Sum_probs=43.6

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecCcchhhhCCeEEEEcCc
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD-KTRILVTHQLQYLNHVDQIVFLNNV   74 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~-~tvi~vtH~~~~~~~~d~v~~l~~g   74 (85)
                      .+..++-.++.++..+|+.+++|||..+   .    ..+ ++..+..| .+++.++|..+....++|+..+..+
T Consensus       237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~----~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~  302 (361)
T 2gza_A          237 APVTAATLLRSCLRMKPTRILLAELRGG---E----AYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQ  302 (361)
T ss_dssp             --CCHHHHHHHHTTSCCSEEEESCCCST---H----HHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHhcCCCEEEEcCchHH---H----HHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            3567888999999999999999999862   2    222 23333444 4678888987655556777666543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.00  E-value=0.073  Score=35.06  Aligned_cols=43  Identities=12%  Similarity=-0.012  Sum_probs=29.1

Q ss_pred             cCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc----CCcEEEEEecCcc
Q psy1506          16 KNADIYLLDDPLSAVDMHVGKHLFEDCISGFL----KDKTRILVTHQLQ   60 (85)
Q Consensus        16 ~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~----~~~tvi~vtH~~~   60 (85)
                      .+|.++++||+... |......+... +....    .+.++|+++|+..
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~-~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRL-GQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHH-TTCHHHHSSCCEEEEEEESSTH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHH-HHhCCCCCcCCEEEEEEECCch
Confidence            45789999999877 77655555433 32222    3678888999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=93.19  E-value=0.23  Score=31.77  Aligned_cols=30  Identities=20%  Similarity=0.060  Sum_probs=23.9

Q ss_pred             CchhHHHHHHHHhcCCCEEEEecCCCCCCH
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDM   32 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDEP~~~LD~   32 (85)
                      ++..+..+..+...+|.++++||+.+..+.
T Consensus        99 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  128 (297)
T 3b9p_A           99 EKLVRALFAVARHMQPSIIFIDEVDSLLSE  128 (297)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred             HHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence            455677788888889999999999877643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.93  E-value=0.00043  Score=42.95  Aligned_cols=27  Identities=11%  Similarity=-0.014  Sum_probs=21.4

Q ss_pred             CCCchhHHHHH-HHHhcCCCEEEEecCC
Q psy1506           1 MTGKSSCQLCF-EAVYKNADIYLLDDPL   27 (85)
Q Consensus         1 ~~g~~~~~~la-ral~~~p~illlDEP~   27 (85)
                      ++||+|+++.+ ++++.++.++++|||.
T Consensus       113 ~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A          113 AIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             EEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             CCCCceEEcCCCcEEEECCceeccCCch
Confidence            36889999887 7788888887788874

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=91.18  E-value=0.16  Score=34.16  Aligned_cols=51  Identities=4%  Similarity=-0.010  Sum_probs=33.1

Q ss_pred             CchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEec
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTH   57 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH   57 (85)
                      ++.+|+..|...+.++++++.|+|...++.  -......+..  .. +..+|+|-+
T Consensus       113 ~e~~~l~~a~~~l~~~~l~I~d~~~~si~~--i~~~ir~l~~--~~gg~~lIVIDy  164 (338)
T 4a1f_A          113 DQWENLAKCFDHLSQKKLFFYDKSYVRIEQ--IRLQLRKLKS--QHKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEECCTTCCHHH--HHHHHHHHHH--HCTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCeEEeCCCCCcHHH--HHHHHHHHHH--hcCCCCEEEEec
Confidence            467889999999999999999999766543  2222222211  23 567777654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.73  E-value=0.2  Score=35.80  Aligned_cols=41  Identities=7%  Similarity=0.014  Sum_probs=33.5

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   42 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~   42 (85)
                      +||+.|++..++....++.++++||... +++.....+++.+
T Consensus       185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~L  225 (604)
T 3k1j_A          185 GTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAM  225 (604)
T ss_dssp             CCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred             cccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHH
Confidence            4678888888888888999999999988 7888777776554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=90.45  E-value=0.69  Score=30.03  Aligned_cols=44  Identities=27%  Similarity=0.350  Sum_probs=26.8

Q ss_pred             hcCCCEEEEecCCCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecC
Q psy1506          15 YKNADIYLLDDPLSAV-DMHVGKHLFEDCISGFLKDKTRILVTHQ   58 (85)
Q Consensus        15 ~~~p~illlDEP~~~L-D~~~~~~i~~~~~~~~~~~~tvi~vtH~   58 (85)
                      +.+++++++||+..-- +....+.++..+-.....+..+|+++++
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~  140 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  140 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            3579999999986633 3244555554432233456667777664

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=89.51  E-value=0.64  Score=31.17  Aligned_cols=46  Identities=13%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             cCCCEEEEecCCCCCC---HHHHHHHHHHHHhhhc-CCcEEEEEecCcchh
Q psy1506          16 KNADIYLLDDPLSAVD---MHVGKHLFEDCISGFL-KDKTRILVTHQLQYL   62 (85)
Q Consensus        16 ~~p~illlDEP~~~LD---~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~   62 (85)
                      ..|.++++||...-++   +...+.+ ..+.+..+ .|..++++||++..+
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l-~~~~~~~Rk~g~~~~~~tQ~~~d~  310 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFL-RDTSKRIRKYNGSLIVISQNVIDF  310 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHH-HHHHHHGGGGTCEEEEEESCGGGG
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHH-HHHHHHhhhhCeEEEEEcCCHHHh
Confidence            3588999999999885   4333433 44444444 488999999988643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=89.43  E-value=0.11  Score=34.60  Aligned_cols=39  Identities=8%  Similarity=-0.013  Sum_probs=31.5

Q ss_pred             CCchhHHHHHHHHhc------CCCEEEEecCCCCCCHHHHHHHHHHHHh
Q psy1506           2 TGKSSCQLCFEAVYK------NADIYLLDDPLSAVDMHVGKHLFEDCIS   44 (85)
Q Consensus         2 ~g~~~~~~laral~~------~p~illlDEP~~~LD~~~~~~i~~~~~~   44 (85)
                      .|++|++..+++++.      +|+++.    +|++|......+++.+.+
T Consensus       213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          213 SAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence            467899999998887      688876    999999988888776544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=89.16  E-value=2.5  Score=27.60  Aligned_cols=25  Identities=12%  Similarity=-0.024  Sum_probs=15.4

Q ss_pred             CchhHHHHHHHHhcCCCEEEEecCC
Q psy1506           3 GKSSCQLCFEAVYKNADIYLLDDPL   27 (85)
Q Consensus         3 g~~~~~~laral~~~p~illlDEP~   27 (85)
                      ++.+|+..|...+.++++++.|+|.
T Consensus       137 ~~~~~l~~a~~~l~~~~i~i~d~~~  161 (315)
T 3bh0_A          137 EDWGKLSMAIGEISNSNINIFDKAG  161 (315)
T ss_dssp             SCHHHHHHHHHHHHTSCEEEECCSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEECCCC
Confidence            4556666666666666666666654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=89.03  E-value=0.85  Score=27.31  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcch
Q psy1506          17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY   61 (85)
Q Consensus        17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~   61 (85)
                      +|.++++||.-. +++.....+... +.....+..+|+++++...
T Consensus       126 ~~~vlviDe~~~-l~~~~~~~l~~~-l~~~~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          126 RFKVYLIDEVHM-LSRHSFNALLKT-LEEPPEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSEEEEEETGGG-SCHHHHHHHHHH-HHSCCTTEEEEEEESCGGG
T ss_pred             CceEEEEECccc-ccHHHHHHHHHH-HhcCCCceEEEEEeCChHh
Confidence            468999999766 676655555433 3332345678888876543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=89.02  E-value=0.32  Score=31.12  Aligned_cols=47  Identities=6%  Similarity=-0.032  Sum_probs=28.2

Q ss_pred             HHHHhcCCCEEEEecCCCC-CCHHHHHHHHHHHHhhhcCCcEEEEEec
Q psy1506          11 FEAVYKNADIYLLDDPLSA-VDMHVGKHLFEDCISGFLKDKTRILVTH   57 (85)
Q Consensus        11 aral~~~p~illlDEP~~~-LD~~~~~~i~~~~~~~~~~~~tvi~vtH   57 (85)
                      ..++..+|+++++||+-.. .+.......++.+......+..++.++|
T Consensus        78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            3445578999999997642 3322222333444334456778888877

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=88.49  E-value=0.00033  Score=49.57  Aligned_cols=51  Identities=10%  Similarity=0.059  Sum_probs=30.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEE--EecCcchhh
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRIL--VTHQLQYLN   63 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~--vtH~~~~~~   63 (85)
                      |+||+||..++           +=| ++|+|+...+.++..+.....++.++++  +||+++.+.
T Consensus       402 s~G~~~R~~~a-----------i~E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~  454 (511)
T 2oap_1          402 RGNTRLRRTKE-----------VNE-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA  454 (511)
T ss_dssp             SSSCEEEEEEE-----------EEE-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred             eCCCceEEEEE-----------EEE-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence            45666665543           126 9999987554443332222234778875  899998763

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=88.42  E-value=0.32  Score=29.31  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=24.8

Q ss_pred             hcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhh-cCCcEEEEEec-Ccchh
Q psy1506          15 YKNADIYLLDDPLS-AVDMHVGKHLFEDCISGF-LKDKTRILVTH-QLQYL   62 (85)
Q Consensus        15 ~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH-~~~~~   62 (85)
                      +.+++++++||+-. .++......++..++... .++..+|++|+ .+..+
T Consensus       113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l  163 (202)
T 2w58_A          113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQL  163 (202)
T ss_dssp             HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHH
T ss_pred             hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHH
Confidence            45788999999933 233222333443333332 34556777766 34443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=87.01  E-value=0.59  Score=30.44  Aligned_cols=42  Identities=17%  Similarity=0.048  Sum_probs=24.1

Q ss_pred             CCEEEEecCCCCCCH---HHHHHHHHHHHhhhc-CCcEEEEEecCcc
Q psy1506          18 ADIYLLDDPLSAVDM---HVGKHLFEDCISGFL-KDKTRILVTHQLQ   60 (85)
Q Consensus        18 p~illlDEP~~~LD~---~~~~~i~~~~~~~~~-~~~tvi~vtH~~~   60 (85)
                      |.++++||+....+.   .....+... ..... .+.++|+++|+..
T Consensus       129 ~~vlilDE~~~l~~~~~~~~l~~l~~~-~~~~~~~~~~~I~~~~~~~  174 (386)
T 2qby_A          129 QVVIVLDEIDAFVKKYNDDILYKLSRI-NSEVNKSKISFIGITNDVK  174 (386)
T ss_dssp             CEEEEEETHHHHHHSSCSTHHHHHHHH-HHSCCC--EEEEEEESCGG
T ss_pred             eEEEEEcChhhhhccCcCHHHHHHhhc-hhhcCCCeEEEEEEECCCC
Confidence            889999999886632   222222221 11112 2568888999764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=86.76  E-value=0.61  Score=31.08  Aligned_cols=62  Identities=11%  Similarity=-0.048  Sum_probs=37.0

Q ss_pred             HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc---------hh-hhCCeEEEEcCcee
Q psy1506           9 LCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ---------YL-NHVDQIVFLNNVSK   76 (85)
Q Consensus         9 ~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~---------~~-~~~d~v~~l~~g~i   76 (85)
                      .++|++..+++++++|.++. .|..   .....+.+  ..+.+.+++||.-.         .. .....|.++..|+.
T Consensus       235 ~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~--~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~  306 (328)
T 3e70_C          235 KIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE--AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG  306 (328)
T ss_dssp             HHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH--HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred             HHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH--hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence            47889988888889996654 3322   12222111  23778999999431         11 12457788877754

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=86.34  E-value=0.53  Score=30.94  Aligned_cols=53  Identities=9%  Similarity=0.027  Sum_probs=31.6

Q ss_pred             hHHHHHHHHh---cCCCEEEEecCCCCCCHH--------HH----HHHHHHHHhhhc-CCcEEEEEecC
Q psy1506           6 SCQLCFEAVY---KNADIYLLDDPLSAVDMH--------VG----KHLFEDCISGFL-KDKTRILVTHQ   58 (85)
Q Consensus         6 ~~~~laral~---~~p~illlDEP~~~LD~~--------~~----~~i~~~~~~~~~-~~~tvi~vtH~   58 (85)
                      +.+..++.++   .+|+++++|+.++-....        .+    .+++..+..... .+.++|++.|-
T Consensus       189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~  257 (324)
T 2z43_A          189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV  257 (324)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence            4555666676   579999999988765321        11    222222222222 37899998874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=85.79  E-value=0.013  Score=37.94  Aligned_cols=40  Identities=13%  Similarity=0.003  Sum_probs=31.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCC------------CCCHHHHHHHHHHH
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLS------------AVDMHVGKHLFEDC   42 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~------------~LD~~~~~~i~~~~   42 (85)
                      ++||+|++.+++|+.++|+++  |||+.            --|...+..+++.+
T Consensus       139 sgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          139 DGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             HTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             hcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            479999999999999999985  99864            23666666666544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=85.31  E-value=0.9  Score=32.66  Aligned_cols=52  Identities=13%  Similarity=0.055  Sum_probs=38.4

Q ss_pred             chhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEec
Q psy1506           4 KSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-K-DKTRILVTH   57 (85)
Q Consensus         4 ~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~-~~tvi~vtH   57 (85)
                      +.+...+.+.++.+|..++++.+++++|..+.. ... +..... . ..|++++|+
T Consensus       170 ~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~-~l~-la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          170 GYKIKTLIKKYIQRQETISLVVVPSNVDIATTE-ALS-MAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH-HHH-HHHHHCSSCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEeccchhccHH-HHH-HHHHHhhcCCceEEEecc
Confidence            567788999999999999999999999986433 333 333332 3 478888888

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=85.05  E-value=0.39  Score=31.50  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=23.6

Q ss_pred             hcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhh-cCCcEEEEEecC
Q psy1506          15 YKNADIYLLDDPLS-AVDMHVGKHLFEDCISGF-LKDKTRILVTHQ   58 (85)
Q Consensus        15 ~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~-~~~~tvi~vtH~   58 (85)
                      +.++++|++||.-. .++......++..++... .++..+|++|+.
T Consensus       212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~  257 (308)
T 2qgz_A          212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY  257 (308)
T ss_dssp             HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred             hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence            45789999999832 334332333444344433 345677777774

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=85.01  E-value=1.1  Score=29.78  Aligned_cols=51  Identities=4%  Similarity=-0.024  Sum_probs=29.7

Q ss_pred             HHHHHHHh----cCCCEEEEecCCCCCCHH--------H----HHHHHHHHHhhhc-CCcEEEEEecC
Q psy1506           8 QLCFEAVY----KNADIYLLDDPLSAVDMH--------V----GKHLFEDCISGFL-KDKTRILVTHQ   58 (85)
Q Consensus         8 ~~laral~----~~p~illlDEP~~~LD~~--------~----~~~i~~~~~~~~~-~~~tvi~vtH~   58 (85)
                      +..++.++    .+++++++|+.++-....        .    ...++..+..... .+.++|++.|-
T Consensus       206 l~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~  273 (343)
T 1v5w_A          206 LDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM  273 (343)
T ss_dssp             HHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence            33445555    578999999999876432        1    1222222222222 37889998884

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=83.25  E-value=1.1  Score=27.21  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=23.2

Q ss_pred             cCCCEEEEecCCCCCC-HHHHHHHHHHHHhh-hcCCcE-EEEEecC
Q psy1506          16 KNADIYLLDDPLSAVD-MHVGKHLFEDCISG-FLKDKT-RILVTHQ   58 (85)
Q Consensus        16 ~~p~illlDEP~~~LD-~~~~~~i~~~~~~~-~~~~~t-vi~vtH~   58 (85)
                      .+|.++++||...--. ......++.. +.. ...+.. +|++++.
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~-l~~~~~~~~~~ii~~~~~  147 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDL-YNRVAEQKRGSLIVSASA  147 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHH-HHHHHHHCSCEEEEEESS
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHH-HHHHHHcCCCeEEEEcCC
Confidence            5689999999655332 2113444433 333 233444 7777763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=83.24  E-value=1.9  Score=27.87  Aligned_cols=42  Identities=12%  Similarity=0.163  Sum_probs=27.3

Q ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcc
Q psy1506          17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQ   60 (85)
Q Consensus        17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~   60 (85)
                      +++++++|| ...+++.....+... ++.......+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~-le~~~~~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRT-METYSGVTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHH-HHHTTTTEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHH-HHhcCCCceEEEEeCchh
Confidence            456999999 677887766655543 444344455677776654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=81.13  E-value=2.7  Score=26.44  Aligned_cols=51  Identities=12%  Similarity=0.036  Sum_probs=32.8

Q ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecC---------c-ch-hhhCCeEEEEc
Q psy1506          17 NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQ---------L-QY-LNHVDQIVFLN   72 (85)
Q Consensus        17 ~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~---------~-~~-~~~~d~v~~l~   72 (85)
                      +++++++||..- ++....+ .+..+   ...+.++|++.|+         . .. +..+|++..|+
T Consensus        89 ~~dvViIDEaQ~-l~~~~ve-~l~~L---~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDRICE-VANIL---AENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTHHHH-HHHHH---HHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHHHHH-HHHHH---HhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            489999999964 6654222 22222   2248899999992         2 22 35689988875

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=80.99  E-value=4.2  Score=25.05  Aligned_cols=42  Identities=5%  Similarity=0.146  Sum_probs=25.9

Q ss_pred             HhcCCCEEEEecCCC-CCCHHHHHHHHHHHHhhhcCCcEEEEE
Q psy1506          14 VYKNADIYLLDDPLS-AVDMHVGKHLFEDCISGFLKDKTRILV   55 (85)
Q Consensus        14 l~~~p~illlDEP~~-~LD~~~~~~i~~~~~~~~~~~~tvi~v   55 (85)
                      -+.+.+++++||... ++|.......++.+.....+-.+++++
T Consensus       173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S  215 (235)
T 3llm_A          173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS  215 (235)
T ss_dssp             CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            468899999999987 577765444444444333222344443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=80.14  E-value=2.6  Score=26.53  Aligned_cols=54  Identities=20%  Similarity=0.154  Sum_probs=30.3

Q ss_pred             HHHHHHHhcCCCEEEEecCCCC----------CCHHHHHHHHHHHHhhh---c--CCcEEEEEecCcchh
Q psy1506           8 QLCFEAVYKNADIYLLDDPLSA----------VDMHVGKHLFEDCISGF---L--KDKTRILVTHQLQYL   62 (85)
Q Consensus         8 ~~laral~~~p~illlDEP~~~----------LD~~~~~~i~~~~~~~~---~--~~~tvi~vtH~~~~~   62 (85)
                      -.+..+....|.++++||.-.-          -+......+. .++...   .  .+..+|.+|+.++.+
T Consensus       101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~-~ll~~~~~~~~~~~~~vI~ttn~~~~l  169 (285)
T 3h4m_A          101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLM-QLLAEMDGFDARGDVKIIGATNRPDIL  169 (285)
T ss_dssp             HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHH-HHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred             HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHH-HHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence            3455566678899999997542          2444334443 333332   1  244677777766443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-15
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	5e-14
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-12
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	5e-11
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-10
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-10
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	9e-07
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-05
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	7e-05
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-04
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-04
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	0.001
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	0.002

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.3 bits (159), Expect = 4e-15
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           AVYK+AD+YLLD P   +D+   + +FE C+   + +KTRILVT ++++L   D+I+ L+
Sbjct: 172 AVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231

Query: 73  N 73
            
Sbjct: 232 Q 232

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 62.2 bits (151), Expect = 5e-14
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+ +++ I +LD+  SA+D    + +    +    K++T +++ H+L  +   D+IV + 
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVE 224

Query: 73  N 73
           +
Sbjct: 225 D 225

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
               N  I +LD+  SA+D+     + E  +    KD+T ++V H+L  + H D+IV + 
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIE 226

Query: 73  N 73
           N
Sbjct: 227 N 227

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 54.2 bits (130), Expect = 5e-11
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A+  N  I + D+  SA+D      +  + +    K +T I++ H+L  + + D+I+ + 
Sbjct: 153 ALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVME 211

Query: 73  N 73
            
Sbjct: 212 K 212

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 1e-10
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFL 71
           A+ +   + +LDD  SA+D +    + +       +  ++ +L+T  L  +   D I+FL
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFL 224

Query: 72  NN 73
             
Sbjct: 225 EG 226

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 52.6 bits (126), Expect = 2e-10
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLN 72
           A  +N  I +LD+  +++D      + +  +   +K +T +++ H+L  +   D+I F+ 
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMV-QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211

Query: 73  N 73
            
Sbjct: 212 K 212

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.5 bits (100), Expect = 9e-07
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
           A+    D+ L D+P SA+D  +   +         + KT ++VTH++ +  HV   ++FL
Sbjct: 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 222

Query: 72  NN 73
           + 
Sbjct: 223 HQ 224

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKD--KTRILVTHQLQYLNHVDQIVF 70
           A+  N  I L D P  A+D   G+ + +  +    ++  KT ++VTH +      ++I++
Sbjct: 159 ALANNPPIILADQPTGALDSKTGEKIMQL-LKKLNEEDGKTVVVVTHDINVARFGERIIY 217

Query: 71  LNN 73
           L +
Sbjct: 218 LKD 220

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 35.3 bits (81), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 15  YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNV 74
             NA+IY+LDDP+ A+D      + +  I   LK+K  ++++ + + L++ D    L+  
Sbjct: 141 LVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIISSR-EELSYCDVNENLHKY 198

Query: 75  S 75
           S
Sbjct: 199 S 199

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 34.9 bits (80), Expect = 4e-04
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 14  VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQY-LNHVDQIVFLN 72
           +  N  + ++D+P++ V   +   +F   +    K  T +++ H+L   LN++D +  + 
Sbjct: 165 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 224

Query: 73  N 73
           N
Sbjct: 225 N 225

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-GFLKDKTRILVTHQLQYLNHV-DQIVF 70
           A+    D+ L+D+PLS +D  +   +  +          T I VTH       + D+I  
Sbjct: 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 209

Query: 71  LNN 73
           +N 
Sbjct: 210 MNR 212

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 13  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHV-DQIVFL 71
           A+  N  + +LD+P S +D+   + + +       +  T ++ +H +  +  + D+I  +
Sbjct: 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 206

Query: 72  NN 73
           +N
Sbjct: 207 HN 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.87
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.81
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.64
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.42
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.94
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.87
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.2
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.01
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.52
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	91.61

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=7.4e-33  Score=179.78  Aligned_cols=84  Identities=21%  Similarity=0.360  Sum_probs=75.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||||||+|||||+++|+++|||||||+||+.+...+++.+ ....+++|+|+|||+++.+..||+|++|++|++++ |
T Consensus       154 SGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G  232 (253)
T d3b60a1         154 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG  232 (253)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH-HHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHH-HHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888887654 44556899999999999888899999999999986 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus       233 ~~~eLl  238 (253)
T d3b60a1         233 THSELL  238 (253)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            988763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.5e-32  Score=177.39  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=75.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+++|||||||+||+.+.+.+++.+ ....+++|+|+|||+++.+..||+|++|++|++++ |
T Consensus       141 SGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G  219 (241)
T d2pmka1         141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG  219 (241)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHH-HHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHH-HHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999999888764 44567899999999999888899999999999985 9


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++++
T Consensus       220 ~~~el  224 (241)
T d2pmka1         220 KHKEL  224 (241)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=177.97  Aligned_cols=85  Identities=19%  Similarity=0.284  Sum_probs=75.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+|||||++|||||+++|+++||||||++||+.+...+++.+.+... .++|+|+|||+++.+..||+|++|++|++++ 
T Consensus       153 SGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~  232 (251)
T d1jj7a_         153 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREG  232 (251)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEE
T ss_pred             ChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            78999999999999999999999999999999998888876544433 3789999999999888899999999999986 


Q ss_pred             CcccccC
Q psy1506          79 GWVEEIL   85 (85)
Q Consensus        79 g~~~~~~   85 (85)
                      |++++++
T Consensus       233 Gt~~eLl  239 (251)
T d1jj7a_         233 GTHQQLM  239 (251)
T ss_dssp             ECHHHHH
T ss_pred             CCHHHHH
Confidence            9988763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=3.2e-32  Score=175.52  Aligned_cols=84  Identities=24%  Similarity=0.250  Sum_probs=75.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||++||+..+..+++.+.+..++ |.|+|+||||++++ ..|||+++|++|++++
T Consensus       138 SGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~  217 (239)
T d1v43a3         138 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ  217 (239)
T ss_dssp             CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999998776555444 89999999999986 5699999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       218 ~G~~~el  224 (239)
T d1v43a3         218 IGSPTEV  224 (239)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             888775

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.97  E-value=2.6e-32  Score=176.04  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=75.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.++..+++.+.+...+ |.|+|++|||++.+ ..|||+++|++|++++
T Consensus       141 SGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~  220 (240)
T d1g2912         141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ  220 (240)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999988776555454 89999999999986 5699999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++|+
T Consensus       221 ~G~~~el  227 (240)
T d1g2912         221 VGSPDEV  227 (240)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             988876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=6.9e-32  Score=173.19  Aligned_cols=81  Identities=21%  Similarity=0.266  Sum_probs=73.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+|||+|||||+.+|+++||||||++||+.++..+++.+.+..++ |.|+|+||||++.+..|||+++|++|++.+ 
T Consensus       147 SGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~  226 (230)
T d1l2ta_         147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE  226 (230)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEe
Confidence            799999999999999999999999999999999999998876655444 899999999998877899999999999975 


Q ss_pred             Ccc
Q psy1506          79 GWV   81 (85)
Q Consensus        79 g~~   81 (85)
                      |.+
T Consensus       227 g~~  229 (230)
T d1l2ta_         227 EKL  229 (230)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            553

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=9.4e-33  Score=178.34  Aligned_cols=83  Identities=20%  Similarity=0.354  Sum_probs=75.6

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+++|||||||+||+.+.+.+++.+ ....+++|+|+|||+++.+..||+|++|++|++++ |
T Consensus       141 SGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l-~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G  219 (242)
T d1mv5a_         141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG  219 (242)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH-HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCS
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEEC
Confidence            799999999999999999999999999999999888887664 44557899999999999888899999999999986 9


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++|+
T Consensus       220 ~~~eL  224 (242)
T d1mv5a_         220 KHNEL  224 (242)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98876

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.5e-32  Score=174.96  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ |.|+|++|||++.+ ..|||+++|++|++.+
T Consensus       142 SGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~  221 (240)
T d3dhwc1         142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE  221 (240)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999998776555555 89999999999987 4699999999999986


Q ss_pred             -CcccccC
Q psy1506          79 -GWVEEIL   85 (85)
Q Consensus        79 -g~~~~~~   85 (85)
                       |++++++
T Consensus       222 ~G~~~ei~  229 (240)
T d3dhwc1         222 QDTVSEVF  229 (240)
T ss_dssp             EEETTTTT
T ss_pred             ECCHHHHH
Confidence             9998874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=6.4e-32  Score=175.54  Aligned_cols=84  Identities=26%  Similarity=0.397  Sum_probs=75.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+||+||++|||||+++|+++|||||||+||+.+.+.+++. +....+++|+|+|||+++.+..||+|++|++|++.+ |
T Consensus       156 SgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~-l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G  234 (255)
T d2hyda1         156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA-LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG  234 (255)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence            78999999999999999999999999999999998888765 455567899999999999988899999999999985 9


Q ss_pred             cccccC
Q psy1506          80 WVEEIL   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++++++
T Consensus       235 ~~~eLl  240 (255)
T d2hyda1         235 THRELI  240 (255)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            988763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.9e-32  Score=174.50  Aligned_cols=84  Identities=23%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||+|||+.++..++..+.+... .|.|+|++|||++.+ ..|||+++|++|++.+
T Consensus       132 SGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~  211 (232)
T d2awna2         132 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  211 (232)
T ss_dssp             --------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999999999877665544 589999999999886 5699999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       212 ~G~~~el  218 (232)
T d2awna2         212 VGKPLEL  218 (232)
T ss_dssp             EECHHHH
T ss_pred             EeCHHHH
Confidence             988775

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=4.5e-32  Score=173.92  Aligned_cols=84  Identities=26%  Similarity=0.219  Sum_probs=75.2

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++||||||++||+.++..+++.+....+ .|.|+|++|||++.+ ..|||+++|++|++.+
T Consensus       129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~  208 (229)
T d3d31a2         129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ  208 (229)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred             CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            79999999999999999999999999999999999988876655444 489999999999886 5699999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       209 ~g~~~el  215 (229)
T d3d31a2         209 VGKPEEI  215 (229)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             988875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=7.3e-32  Score=174.06  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=75.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|+++|+||||++||+.++..+++.+.+...+ |.|+|++|||++.+ ..|||+++|++|++.+
T Consensus       142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~  221 (242)
T d1oxxk2         142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ  221 (242)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999998776554444 89999999999886 6799999999999986


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+|+++
T Consensus       222 ~g~~~el  228 (242)
T d1oxxk2         222 VGKPEDL  228 (242)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence             888775

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=1.1e-31  Score=174.58  Aligned_cols=84  Identities=21%  Similarity=0.291  Sum_probs=76.4

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+.+...+++.+.+...+|.|+++||||++.+ ..|||+++|++|++++ 
T Consensus       151 SGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~  230 (258)
T d1b0ua_         151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  230 (258)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            79999999999999999999999999999999999999877655555789999999999986 4699999999999986 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       231 g~~~ev  236 (258)
T d1b0ua_         231 GDPEQV  236 (258)
T ss_dssp             ECHHHH
T ss_pred             cCHHHH
Confidence            988876

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-31  Score=176.19  Aligned_cols=84  Identities=36%  Similarity=0.608  Sum_probs=76.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEEcCceeec-C
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFLNNVSKTS-G   79 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~-g   79 (85)
                      |+|||||++|||||+++|+++||||||++||+.+.+.+++.++....+++|+|+|||+++.+..||+|++|++|++.+ |
T Consensus       160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~G  239 (281)
T d1r0wa_         160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYG  239 (281)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEEC
Confidence            789999999999999999999999999999999888888765555567899999999998888899999999999976 9


Q ss_pred             ccccc
Q psy1506          80 WVEEI   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +++|+
T Consensus       240 t~~eL  244 (281)
T d1r0wa_         240 TFSEL  244 (281)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.97  E-value=2.1e-31  Score=171.76  Aligned_cols=84  Identities=14%  Similarity=0.081  Sum_probs=76.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||+|||+..+..+++.+.+...+|.|++++||+++.+ ..|||+++|++|++.. 
T Consensus       141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~  220 (240)
T d1ji0a_         141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            79999999999999999999999999999999999999877655556789999999999886 5699999999999975 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       221 g~~~el  226 (240)
T d1ji0a_         221 GKASEL  226 (240)
T ss_dssp             EEHHHH
T ss_pred             cCHHHH
Confidence            888775

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=1.6e-31  Score=172.20  Aligned_cols=84  Identities=26%  Similarity=0.270  Sum_probs=75.1

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchh-hhCCeEEEEcCceeec
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYL-NHVDQIVFLNNVSKTS   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~   78 (85)
                      |+||+||++|||||+.+|++++|||||+|||+.++..+++.+.+...+ |.|+|++||+++.+ ..||++++|++|++.+
T Consensus       128 SGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~  207 (240)
T d2onka1         128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE  207 (240)
T ss_dssp             CHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            799999999999999999999999999999999999888776554444 89999999999886 5699999999999875


Q ss_pred             -Cccccc
Q psy1506          79 -GWVEEI   84 (85)
Q Consensus        79 -g~~~~~   84 (85)
                       |+++++
T Consensus       208 ~G~~~el  214 (240)
T d2onka1         208 KGKLKEL  214 (240)
T ss_dssp             EECHHHH
T ss_pred             EecHHHH
Confidence             988775

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=7.9e-31  Score=170.21  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=75.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|+++||||||+|||+..+..+++.+.+...+|.|++++||+++.+ ..|||+++|++|+++. 
T Consensus       152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~  231 (254)
T d1g6ha_         152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  231 (254)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence            79999999999999999999999999999999999999877665556799999999999986 6799999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++|+
T Consensus       232 g~~~e~  237 (254)
T d1g6ha_         232 GRGEEE  237 (254)
T ss_dssp             EESHHH
T ss_pred             ecHHHH
Confidence            888763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.5e-30  Score=167.62  Aligned_cols=84  Identities=21%  Similarity=0.275  Sum_probs=74.8

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhh-hCCeEEEEcCceeec-
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLN-HVDQIVFLNNVSKTS-   78 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~g~i~~-   78 (85)
                      |+||+||++|||||+.+|++++|||||+|||+...+.+++.+.+...+|.|++++||+++++. .|||+++|++|++.. 
T Consensus       135 SgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~  214 (238)
T d1vpla_         135 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET  214 (238)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            789999999999999999999999999999999888887665444457899999999999875 699999999999875 


Q ss_pred             Cccccc
Q psy1506          79 GWVEEI   84 (85)
Q Consensus        79 g~~~~~   84 (85)
                      |+++++
T Consensus       215 g~~~el  220 (238)
T d1vpla_         215 GTVEEL  220 (238)
T ss_dssp             EEHHHH
T ss_pred             cCHHHH
Confidence            988875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.2e-30  Score=164.39  Aligned_cols=85  Identities=19%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             CCCchhHHHHHHHHhc-------CCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchh-hhCCeEEEEc
Q psy1506           1 MTGKSSCQLCFEAVYK-------NADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYL-NHVDQIVFLN   72 (85)
Q Consensus         1 ~~g~~~~~~laral~~-------~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~   72 (85)
                      |+||+||+++||||++       +|+++||||||+|||+.....+++.+.....+|.|+|++||+++.+ ..||++++|+
T Consensus       127 SgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~  206 (231)
T d1l7vc_         127 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLK  206 (231)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEE
T ss_pred             CHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence            7999999999999997       7799999999999999988888765544456799999999999875 6799999999


Q ss_pred             Cceeec-CcccccC
Q psy1506          73 NVSKTS-GWVEEIL   85 (85)
Q Consensus        73 ~g~i~~-g~~~~~~   85 (85)
                      +|++.. |++++++
T Consensus       207 ~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         207 GGKMLASGRREEVL  220 (231)
T ss_dssp             TTEECCCSBHHHHS
T ss_pred             CCEEEEECCHHHHh
Confidence            999986 9988764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=4.2e-23  Score=129.58  Aligned_cols=70  Identities=21%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             CCCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecCcchhhhCCeEEEEcC
Q psy1506           1 MTGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLK-DKTRILVTHQLQYLNHVDQIVFLNN   73 (85)
Q Consensus         1 ~~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~   73 (85)
                      |+||+||+++||||+.+|+++||||||+|||+.++..+++.+.+...+ +.+++.++|+   +..||.+.+|++
T Consensus       127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~  197 (200)
T d1sgwa_         127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK  197 (200)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred             CCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence            789999999999999999999999999999999888888776655544 3344444444   356899888854

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=3e-13  Score=89.56  Aligned_cols=71  Identities=14%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CCCchhHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEEE
Q psy1506           1 MTGKSSCQLCFEAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVFL   71 (85)
Q Consensus         1 ~~g~~~~~~laral----~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l   71 (85)
                      |+||++.+++|..+    ..++++++||||+++||+.....+.+.+......+.-+|++||++..+..+|+.+.+
T Consensus       334 SgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             ccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            78999987776443    477889999999999999988888766544334566799999999999999987655

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=3.6e-09  Score=67.54  Aligned_cols=73  Identities=18%  Similarity=0.093  Sum_probs=56.9

Q ss_pred             CCCchhHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhcCCcEEEEEecCcchhhhCCeEEE--EcCc
Q psy1506           1 MTGKSSCQLCFEA----VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFLKDKTRILVTHQLQYLNHVDQIVF--LNNV   74 (85)
Q Consensus         1 ~~g~~~~~~lara----l~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~--l~~g   74 (85)
                      +.|+++...++..    ....+.++++|||-++|+|...+.+... ++...++.-+|++||++..+..+|+++.  +++|
T Consensus       221 ~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~-l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g  299 (308)
T d1e69a_         221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-LKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG  299 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-HHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred             hHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHH-HHHhccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence            4588887766554    3366789999999999999988887765 4445566789999999999998998855  5566

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.87  E-value=5.5e-10  Score=66.27  Aligned_cols=75  Identities=9%  Similarity=-0.084  Sum_probs=55.2

Q ss_pred             CCchhHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhhhCCeEEEEcCceeec
Q psy1506           2 TGKSSCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLNHVDQIVFLNNVSKTS   78 (85)
Q Consensus         2 ~g~~~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~g~i~~   78 (85)
                      .|++++.++++++..+|+++++|||....+.  .......+.+... .+.++++++|+......++++..+.+|.+..
T Consensus        84 ~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~  159 (178)
T d1ye8a1          84 AIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIE  159 (178)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEE
T ss_pred             hhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEEEE
Confidence            4789999999999999999999998655432  2333344444444 3689999999876666677777777777653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.01  E-value=0.001  Score=40.94  Aligned_cols=58  Identities=10%  Similarity=0.067  Sum_probs=42.3

Q ss_pred             hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecCcchhh
Q psy1506           6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGFL-KDKTRILVTHQLQYLN   63 (85)
Q Consensus         6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~~-~~~tvi~vtH~~~~~~   63 (85)
                      +++.-..--..+..++|+||+..|=++.....+...+++.+. .+..++++||..+...
T Consensus       103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            444443334456679999999999999988887777766654 4678899999866543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0052  Score=37.84  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=38.6

Q ss_pred             hHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHhhh-cC-CcEEEEEecCcch
Q psy1506           6 SCQLCFEAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGF-LK-DKTRILVTHQLQY   61 (85)
Q Consensus         6 ~~~~laral~~~p~illlDEP~~~LD~~~~~~i~~~~~~~~-~~-~~tvi~vtH~~~~   61 (85)
                      +++.-..--..+..++|+||+..|=++.....+...+++.+ .+ +..++++||..+.
T Consensus       109 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l  166 (234)
T d1wb9a2         109 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL  166 (234)
T ss_dssp             HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             HHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence            34333333345566999999999999988877776666554 33 4578888886543

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.61  E-value=0.14  Score=29.50  Aligned_cols=65  Identities=14%  Similarity=0.074  Sum_probs=43.3

Q ss_pred             HHHHHHHh--cCCCEEEEecCCCCCCHH--HHHHHHHHHHhhhcCCcEEEEEecCcc-h-hhhCCeEEEEcC
Q psy1506           8 QLCFEAVY--KNADIYLLDDPLSAVDMH--VGKHLFEDCISGFLKDKTRILVTHQLQ-Y-LNHVDQIVFLNN   73 (85)
Q Consensus         8 ~~laral~--~~p~illlDEP~~~LD~~--~~~~i~~~~~~~~~~~~tvi~vtH~~~-~-~~~~d~v~~l~~   73 (85)
                      ..+|+..+  .+.++++|||-..+++..  ....+.+. ++...++.-+|++-++.. . +..+|.|..|+.
T Consensus        83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~l-l~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISA-LNARPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHH-HHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHH-HHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            34455544  447899999998877432  23455543 444445778999998764 3 467999988864