Psyllid ID: psy15117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRRHKMSDQNMVIR
Secondary Structure (PSIPRED)
cHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccccHHHHcccHHHHccccHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
MTEALKASFASWEKEQIRLNivkdprqwsesNVAQWLCWAIREFSLEGVTLHqfymrgkdicsmgkesflarappfmgDILWEHLEILQKANAKGVAVATCRrhkmsdqnmvir
Flexible Loop (DISEMBL)
mtealkasfaswekEQIRLNivkdprqwSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATcrrhkmsdqnmvir
Low Complexity Region (SEG)
MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRRHKMSDQNMVIR
Disordered region (IsUnstruct)
**********SWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCR************
Disordered Region (DISOPRED)
*T*************QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN*********************R
Disordered Region (DISEMBL)
*********ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA*********CRRHKM********
Disordered Region (DISPRO)
*T**LKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK**AVATC**H**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRRHKMSDQNMVIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
P27577	440	Protein C-ets-1 OS=Mus mu	yes	N/A	0.824	0.213	0.585	3e-29
P41156	441	Protein C-ets-1 OS=Rattus	yes	N/A	0.824	0.213	0.585	3e-29
P01105	669	p135Gag-Myb-Ets-transform	N/A	N/A	0.824	0.140	0.585	3e-29
P14921	441	Protein C-ets-1 OS=Homo s	yes	N/A	0.824	0.213	0.574	6e-29
P15062	485	Transforming protein p68/	yes	N/A	0.824	0.193	0.585	9e-29
P13474	441	Transforming protein p54/	yes	N/A	0.824	0.213	0.574	2e-28
P51023	718	ETS-like protein pointed,	yes	N/A	0.789	0.125	0.604	3e-27
P15037	468	Protein C-ets-2 OS=Mus mu	no	N/A	0.807	0.196	0.586	6e-26
P18755	438	Protein c-ets-1-A OS=Xeno	N/A	N/A	0.789	0.205	0.544	7e-26
P10157	479	Protein C-ets-2 OS=Gallus	no	N/A	0.789	0.187	0.544	7e-25

>sp|P27577|ETS1_MOUSE Protein C-ets-1 OS=Mus musculus GN=Ets1 PE=1 SV=2

 Score =  127 bits (318), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 45  MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 104

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct: 105 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 138

Transcription factor.
Mus musculus (taxid: 10090)

>sp|P41156|ETS1_RAT Protein C-ets-1 OS=Rattus norvegicus GN=Ets1 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 45  MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct: 105 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 138

Transcription factor.

Rattus norvegicus (taxid: 10116)

>sp|P01105|MYBE_AVILE p135Gag-Myb-Ets-transforming protein (Fragment) OS=Avian leukemia virus E26 GN=GAG PE=4 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDP+QW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 270 MSQALKATFSGFAKEQQRLGIPKDPQQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 329

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK  AK
Sbjct: 330 LCALGKECFLELAPDFVGDILWEHLEILQKEEAK 363

DNA-binding protein that specifically recognizes the sequence 5'-YAAC[GT]G-3'. The Myb-Ets protein induces predominantly erythroblastosis in chicken and transforms avian erythroblasts and immature myelomonocytic cells in culture. It appears that the Ets domain is responsible for the effects on erythroid cells and that the Myb domain encodes the myeloid-transforming capacity.

Galliformes (taxid: 8976)

>sp|P14921|ETS1_HUMAN Protein C-ets-1 OS=Homo sapiens GN=ETS1 PE=1 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 45  MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct: 105 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 138

Transcription factor.

Homo sapiens (taxid: 9606)

>sp|P15062|ETS1B_CHICK Transforming protein p68/c-ets-1 OS=Gallus gallus GN=ETS1 PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDP+QW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 89  MSQALKATFSGFAKEQQRLGIPKDPQQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 148

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK  AK
Sbjct: 149 LCALGKECFLELAPDFVGDILWEHLEILQKEEAK 182

This protein is the normal cellular product of chicken ETS. In the E26 virus, ETS is responsible for erythroblast transformation.

Gallus gallus (taxid: 9031)

>sp|P13474|ETS1A_CHICK Transforming protein p54/c-ets-1 OS=Gallus gallus GN=ETS1 PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 71/94 (75%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDP+QW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 45  MSQALKATFSGFAKEQQRLGIPKDPQQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL   P F+GDILWEHLEILQK  AK
Sbjct: 105 LCALGKECFLELRPDFVGDILWEHLEILQKEEAK 138

This protein is the normal cellular product of chicken ETS. In the E26 virus, ETS is responsible for erythroblast transformation.

Gallus gallus (taxid: 9031)

>sp|P51023|PNT2_DROME ETS-like protein pointed, isoform P2/D OS=Drosophila melanogaster GN=pnt PE=2 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
           + E LKASFASWEKE  + NI KDPR+W+E +V  WL WA  EFSL  + L  FY M+G+
Sbjct: 158 VNEVLKASFASWEKEVQKCNITKDPREWTEEHVIYWLNWAKNEFSLVSMNLDPFYKMKGR 217

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQK 90
            +  +GKE FLA  PPF GDILWEHL+ILQK
Sbjct: 218 AMVDLGKEKFLAITPPFTGDILWEHLDILQK 248

Required for glial-neuronal cell interactions at the ventral midline which are necessary for the proper elaboration of commissures in the embryonic CNS.

Drosophila melanogaster (taxid: 7227)

>sp|P15037|ETS2_MOUSE Protein C-ets-2 OS=Mus musculus GN=Ets2 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 67/92 (72%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ ++KEQ RL I K+P  WSE  V QWL WA  EFSL  V LHQF M G+ 
Sbjct: 79  MSQALKATFSGFQKEQRRLGIPKNPWLWSEQQVCQWLLWATNEFSLVNVNLHQFGMNGQM 138

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKAN 92
           +C++GKE FL  AP F+GDILWEHLE + K N
Sbjct: 139 LCNLGKERFLELAPDFVGDILWEHLEQMIKEN 170

Mus musculus (taxid: 10090)

>sp|P18755|ETS1A_XENLA Protein c-ets-1-A OS=Xenopus laevis GN=ets1-a PE=2 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 69/90 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++AL+A+F+ + KEQ RL I  DPR+W++ +V +W+ WA+ EF+L+GV   +F M G  
Sbjct: 43  MSQALRATFSRFTKEQQRLGIPIDPREWTDMHVREWVSWAVNEFTLKGVDFQKFCMSGAA 102

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQK 90
           +C++GKE FL  AP F+GDILWEHLEILQK
Sbjct: 103 LCALGKECFLELAPDFVGDILWEHLEILQK 132

Xenopus laevis (taxid: 8355)

>sp|P10157|ETS2_CHICK Protein C-ets-2 OS=Gallus gallus GN=ETS2 PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 65/90 (72%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALK +F+ + KEQ RL I  +P  W+E +V QWL WA  EFSL  V +HQF M G+D
Sbjct: 82  MSQALKDTFSGFTKEQCRLGIPNNPWLWTEQHVCQWLAWATNEFSLANVNIHQFLMSGQD 141

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQK 90
           +C++GKE FL  AP ++GDILWEHLE + K
Sbjct: 142 LCNLGKERFLELAPDYVGDILWEHLEQMIK 171

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
242017229	191	conserved hypothetical protein [Pediculu	0.789	0.471	0.844	1e-41
189239154	488	PREDICTED: similar to Ets domain-contain	0.789	0.184	0.766	3e-37
383862764	683	PREDICTED: uncharacterized protein LOC10	0.789	0.131	0.769	5e-36
321473813	103	hypothetical protein DAPPUDRAFT_36179 [D	0.789	0.873	0.8	6e-36
270010827	312	hypothetical protein TcasGA2_TC014509 [T	0.789	0.288	0.766	7e-36
380029786	593	PREDICTED: uncharacterized protein LOC10	0.956	0.183	0.654	1e-35
340719638	593	PREDICTED: hypothetical protein LOC10064	0.956	0.183	0.654	1e-35
240952647	609	ets2, putative [Ixodes scapularis] gi|21	0.850	0.159	0.680	2e-35
328785918	687	PREDICTED: hypothetical protein LOC41291	0.789	0.131	0.769	4e-35
350400995	681	PREDICTED: hypothetical protein LOC10074	0.789	0.132	0.769	4e-35

>gi|242017229|ref|XP_002429094.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513958|gb|EEB16356.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 87/90 (96%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           MTEALKASFASWEKEQ++LNIVKDP+QW+E++VA WLCWAIREFSLEGV++ QFYM+GKD
Sbjct: 30  MTEALKASFASWEKEQLKLNIVKDPKQWTETHVAHWLCWAIREFSLEGVSIQQFYMKGKD 89

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQK 90
           IC+MGKE+FLARAPPF GDILWEHLEILQK
Sbjct: 90  ICAMGKENFLARAPPFTGDILWEHLEILQK 119

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239154|ref|XP_971341.2| PREDICTED: similar to Ets domain-containing protein [Tribolium castaneum]

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/90 (76%), Positives = 80/90 (88%)

Query: 1  MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
          M EALKASFASWEKEQIRLNI KDPRQW+E++VA WL WA +EFSLE + LHQF M+GKD
Sbjct: 1  MAEALKASFASWEKEQIRLNITKDPRQWTENHVAHWLQWAAKEFSLECIPLHQFRMKGKD 60

Query: 61 ICSMGKESFLARAPPFMGDILWEHLEILQK 90
          IC+MGK++F ARAP F+GDILWEHLE+LQK
Sbjct: 61 ICAMGKDAFAARAPAFVGDILWEHLELLQK 90

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862764|ref|XP_003706853.1| PREDICTED: uncharacterized protein LOC100878829 [Megachile rotundata]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/91 (76%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGK 59
           MTEAL+ASFASWEKE++RLNI KDPRQWSE+ VA WL WAI EFSLEGV +  + +M GK
Sbjct: 122 MTEALEASFASWEKERVRLNITKDPRQWSEAAVAHWLHWAIGEFSLEGVAMQPWQHMTGK 181

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQK 90
            IC+MGKESFLARAP FMGDILWEHLE+LQK
Sbjct: 182 QICAMGKESFLARAPAFMGDILWEHLELLQK 212

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473813|gb|EFX84779.1| hypothetical protein DAPPUDRAFT_36179 [Daphnia pulex]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 80/90 (88%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           MTEALKASFASWEKEQ RL I KDPR WSES+V++WL WAI+EFSLEGV L  F MRG+D
Sbjct: 14  MTEALKASFASWEKEQERLGIPKDPRLWSESDVSRWLNWAIKEFSLEGVVLQHFRMRGRD 73

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQK 90
           +C+MGKE+FLAR PPFMGDILWEHLEILQK
Sbjct: 74  MCAMGKENFLARTPPFMGDILWEHLEILQK 103

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010827|gb|EFA07275.1| hypothetical protein TcasGA2_TC014509 [Tribolium castaneum]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 80/90 (88%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M EALKASFASWEKEQIRLNI KDPRQW+E++VA WL WA +EFSLE + LHQF M+GKD
Sbjct: 155 MAEALKASFASWEKEQIRLNITKDPRQWTENHVAHWLQWAAKEFSLECIPLHQFRMKGKD 214

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQK 90
           IC+MGK++F ARAP F+GDILWEHLE+LQK
Sbjct: 215 ICAMGKDAFAARAPAFVGDILWEHLELLQK 244

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029786|ref|XP_003698546.1| PREDICTED: uncharacterized protein LOC100864450 [Apis florea]

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
           MTEAL+ASFASWEKE++RLNI KDPRQWSE+ VA WL WAI EFSL GV +  +  M GK
Sbjct: 121 MTEALEASFASWEKERVRLNITKDPRQWSEAAVAHWLHWAIGEFSLAGVAIQPWQNMTGK 180

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRRHKMSDQ 109
            IC+MGKESFLARAP FMGDILWEHLEILQK     +    C+     D+
Sbjct: 181 QICAMGKESFLARAPAFMGDILWEHLEILQKGGYNHLRSPVCQDENQRDE 230

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719638|ref|XP_003398255.1| PREDICTED: hypothetical protein LOC100644371 isoform 2 [Bombus terrestris] gi|350400992|ref|XP_003486022.1| PREDICTED: hypothetical protein LOC100745810 isoform 1 [Bombus impatiens]

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
           MTEAL+ASFASWEKE++RLNI KDPRQWSE+ VA WL WAI EFSL GV +  +  M GK
Sbjct: 121 MTEALEASFASWEKERVRLNITKDPRQWSEAAVAHWLHWAIGEFSLAGVAMQPWQNMTGK 180

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRRHKMSDQ 109
            IC+MGKESFLARAP FMGDILWEHLEILQK     +    C+     D+
Sbjct: 181 QICAMGKESFLARAPAFMGDILWEHLEILQKGGYNHLRSPVCQDENQRDE 230

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240952647|ref|XP_002399485.1| ets2, putative [Ixodes scapularis] gi|215490599|gb|EEC00242.1| ets2, putative [Ixodes scapularis]

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/97 (68%), Positives = 80/97 (82%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           MT+AL ASF+SWEKE+  LNI +DPRQW+E +VA WL WAIREFSLEGV +  F M+GKD
Sbjct: 34  MTQALTASFSSWEKERESLNITRDPRQWTEMDVAHWLGWAIREFSLEGVNMPNFAMKGKD 93

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVA 97
           +C++GKE+FL RAPPFMGDILWEHL+ILQK +    A
Sbjct: 94  MCALGKEAFLTRAPPFMGDILWEHLDILQKVSRASFA 130

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785918|ref|XP_003250677.1| PREDICTED: hypothetical protein LOC412916 [Apis mellifera]

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/91 (76%), Positives = 77/91 (84%), Gaps = 1/91 (1%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
           MTEAL+ASFASWEKE++RLNI KDPRQWSE+ VA WL WAI EFSL GV +  +  M GK
Sbjct: 121 MTEALEASFASWEKERVRLNITKDPRQWSEAAVAHWLHWAIGEFSLAGVAIQPWQNMTGK 180

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQK 90
            IC+MGKESFLARAP FMGDILWEHLEILQK
Sbjct: 181 QICAMGKESFLARAPAFMGDILWEHLEILQK 211

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400995|ref|XP_003486023.1| PREDICTED: hypothetical protein LOC100745810 isoform 2 [Bombus impatiens]

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/91 (76%), Positives = 77/91 (84%), Gaps = 1/91 (1%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
           MTEAL+ASFASWEKE++RLNI KDPRQWSE+ VA WL WAI EFSL GV +  +  M GK
Sbjct: 121 MTEALEASFASWEKERVRLNITKDPRQWSEAAVAHWLHWAIGEFSLAGVAMQPWQNMTGK 180

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQK 90
            IC+MGKESFLARAP FMGDILWEHLEILQK
Sbjct: 181 QICAMGKESFLARAPAFMGDILWEHLEILQK 211

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
RGD|2583	441	Ets1 "v-ets erythroblastosis v	0.824	0.213	0.585	2.8e-27
UNIPROTKB|G9LQW2	441	TNIP1 "ETS-1A" [Gallus gallus	0.824	0.213	0.585	3.5e-27
MGI|MGI:95455	440	Ets1 "E26 avian leukemia oncog	0.824	0.213	0.585	3.5e-27
UNIPROTKB|A5PJG9	441	ETS1 "Uncharacterized protein"	0.824	0.213	0.574	4.5e-27
UNIPROTKB|J9NXR6	441	ETS1 "Uncharacterized protein"	0.824	0.213	0.574	4.5e-27
UNIPROTKB|F1S6G9	415	ETS1 "Uncharacterized protein"	0.824	0.226	0.574	4.5e-27
UNIPROTKB|P14921	441	ETS1 "Protein C-ets-1" [Homo s	0.824	0.213	0.574	5.7e-27
UNIPROTKB|Q96AC5	272	ETS1 "V-ets erythroblastosis v	0.824	0.345	0.574	5.7e-27
UNIPROTKB|Q6Q428	441	c-ets1 "C-ets-1" [Oryctolagus	0.824	0.213	0.574	5.7e-27
UNIPROTKB|F1P3R9	485	TNIP1 "Uncharacterized protein	0.824	0.193	0.585	7.5e-27

RGD|2583 Ets1 "v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)" [Rattus norvegicus (taxid:10116)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0001666 "response to hypoxia" evidence=IEP

GO:0003677 "DNA binding" evidence=ISO;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS;IDA

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0007565 "female pregnancy" evidence=IEP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IMP

GO:0021854 "hypothalamus development" evidence=IEP

GO:0021983 "pituitary gland development" evidence=IEP

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0030578 "PML body organization" evidence=IEA;ISO

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=ISO;IDA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISO;ISS

GO:0045766 "positive regulation of angiogenesis" evidence=IMP

GO:0045786 "negative regulation of cell cycle" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046677 "response to antibiotic" evidence=IEA;ISO

GO:0048870 "cell motility" evidence=IEA;ISO

GO:0051272 "positive regulation of cellular component movement" evidence=ISO

GO:0060055 "angiogenesis involved in wound healing" evidence=IEP

GO:0060206 "estrous cycle phase" evidence=IEP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

GO:0070555 "response to interleukin-1" evidence=IEP

UNIPROTKB|G9LQW2 TNIP1 "ETS-1A" [Gallus gallus (taxid:9031)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDP+QW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFAKEQQRLGIPKDPQQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GKE FL  AP F+GDILWEHLEILQK  AK
Sbjct:   105 LCALGKECFLELAPDFVGDILWEHLEILQKEEAK 138

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:95455 Ets1 "E26 avian leukemia oncogene 1, 5' domain" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0010715 "regulation of extracellular matrix disassembly" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0030578 "PML body organization" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO;IDA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISO

GO:0045766 "positive regulation of angiogenesis" evidence=ISO

GO:0045786 "negative regulation of cell cycle" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI;IDA

GO:0046677 "response to antibiotic" evidence=ISO

GO:0048870 "cell motility" evidence=ISO

GO:0051272 "positive regulation of cellular component movement" evidence=ISO

UNIPROTKB|A5PJG9 ETS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0030578 "PML body organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|J9NXR6 ETS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1S6G9 ETS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    19 MSQALKATFSGFSKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 78

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct:    79 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 112

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0030578 "PML body organization" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P14921 ETS1 "Protein C-ets-1" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0007565 "female pregnancy" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IEA

GO:0010715 "regulation of extracellular matrix disassembly" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0060055 "angiogenesis involved in wound healing" evidence=IEA

GO:0060206 "estrous cycle phase" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0070555 "response to interleukin-1" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0045786 "negative regulation of cell cycle" evidence=IDA;IMP

GO:0003677 "DNA binding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=NAS

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0046677 "response to antibiotic" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0006955 "immune response" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0030578 "PML body organization" evidence=IDA

GO:0048870 "cell motility" evidence=IMP

GO:0051272 "positive regulation of cellular component movement" evidence=IMP

UNIPROTKB|Q96AC5 ETS1 "V-ets erythroblastosis virus E26 oncogene homolog 1 (Avian), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q6Q428 c-ets1 "C-ets-1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    45 MSQALKATFSGFAKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 104

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GK+ FL  AP F+GDILWEHLEILQK + K
Sbjct:   105 LCALGKDCFLELAPDFVGDILWEHLEILQKEDVK 138

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|F1P3R9 TNIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 305 (112.4 bits), Expect = 7.5e-27, P = 7.5e-27
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query:     1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
             M++ALKA+F+ + KEQ RL I KDP+QW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct:    89 MSQALKATFSGFAKEQQRLGIPKDPQQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAA 148

Query:    61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
             +C++GKE FL  AP F+GDILWEHLEILQK  AK
Sbjct:   149 LCALGKECFLELAPDFVGDILWEHLEILQKEEAK 182

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030578 "PML body organization" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0051272 "positive regulation of cellular component movement" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P41156	ETS1_RAT	No assigned EC number	0.5851	0.8245	0.2131	yes	N/A
P51023	PNT2_DROME	No assigned EC number	0.6043	0.7894	0.1253	yes	N/A
P15062	ETS1B_CHICK	No assigned EC number	0.5851	0.8245	0.1938	yes	N/A
P27577	ETS1_MOUSE	No assigned EC number	0.5851	0.8245	0.2136	yes	N/A
P14921	ETS1_HUMAN	No assigned EC number	0.5744	0.8245	0.2131	yes	N/A
P13474	ETS1A_CHICK	No assigned EC number	0.5744	0.8245	0.2131	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
cd08533	71	cd08533, SAM_PNT-ETS-1,2, Sterile alpha motif (SAM	4e-40
cd08542	88	cd08542, SAM_PNT-ETS-1, Sterile alpha motif (SAM)/	7e-35
cd08543	89	cd08543, SAM_PNT-ETS-2, Sterile alpha motif (SAM)/	2e-32
pfam02198	83	pfam02198, SAM_PNT, Sterile alpha motif (SAM)/Poin	5e-32
smart00251	82	smart00251, SAM_PNT, SAM / Pointed domain	5e-32
cd08534	89	cd08534, SAM_PNT-GABP-alpha, Sterile alpha motif (	7e-29
cd08203	67	cd08203, SAM_PNT, Sterile alpha motif (SAM)/Pointe	6e-23
cd08535	68	cd08535, SAM_PNT-Tel_Yan, Sterile alpha motif (SAM	1e-18
cd08532	81	cd08532, SAM_PNT-PDEF-like, Sterile alpha motif (S	2e-18
cd08531	75	cd08531, SAM_PNT-ERG_FLI-1, Sterile alpha motif (S	7e-16
cd08540	75	cd08540, SAM_PNT-ERG, Sterile alpha motif (SAM)/Po	8e-13
cd08536	66	cd08536, SAM_PNT-Mae, Sterile alpha motif (SAM)/Po	2e-12
cd08541	91	cd08541, SAM_PNT-FLI-1, Sterile alpha motif (SAM)/	4e-12
cd08538	84	cd08538, SAM_PNT-ESE-2-like, Sterile alpha motif (	0.003

>gnl|CDD|188879 cd08533, SAM_PNT-ETS-1,2, Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family

 Score =  127 bits (321), Expect = 4e-40
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 23 KDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILW 82
          KDPRQWSE+ VA WL WA  EFSLEGV L  F M G+D+C++GKE+FL+ APPF+GDILW
Sbjct: 2  KDPRQWSETQVAYWLDWAANEFSLEGVNLSNFCMSGRDMCALGKEAFLSLAPPFVGDILW 61

Query: 83 EHLEILQK 90
          EHL+ILQK
Sbjct: 62 EHLDILQK 69

SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy. Length = 71

>gnl|CDD|176092 cd08542, SAM_PNT-ETS-1, Sterile alpha motif (SAM)/Pointed domain of ETS-1

 Score =  114 bits (287), Expect = 7e-35
 Identities = 50/88 (56%), Positives = 67/88 (76%)

Query: 7  ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
          A+F+ + KEQ RL I KDPR+W+E++V +W+ WA+ EFSL+GV   +F M G  +C++GK
Sbjct: 1  ATFSGFTKEQQRLGIPKDPREWTETHVREWVMWAVNEFSLKGVDFQKFCMSGAALCALGK 60

Query: 67 ESFLARAPPFMGDILWEHLEILQKANAK 94
          E FL  AP F+GDILWEHLEILQK + K
Sbjct: 61 ECFLELAPDFVGDILWEHLEILQKEDPK 88

SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play a role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy. Length = 88

>gnl|CDD|188884 cd08543, SAM_PNT-ETS-2, Sterile alpha motif (SAM)/Pointed domain of ETS-2

 Score =  108 bits (272), Expect = 2e-32
 Identities = 46/86 (53%), Positives = 58/86 (67%)

Query: 7  ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
           +F+ + KEQ RL I K+P  W+E  V QWL WA  EFSL  V   QF M G+++C++GK
Sbjct: 1  DTFSGFSKEQRRLGIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQFLMNGQELCNLGK 60

Query: 67 ESFLARAPPFMGDILWEHLEILQKAN 92
          E FL  AP F+GDILWEHLE + K N
Sbjct: 61 ERFLELAPDFVGDILWEHLEQMIKEN 86

SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy. Length = 89

>gnl|CDD|202149 pfam02198, SAM_PNT, Sterile alpha motif (SAM)/Pointed domain

 Score =  107 bits (269), Expect = 5e-32
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 1/84 (1%)

Query: 9  FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKES 68
          F +++KEQ RL I  DP  W+E +V +WL WA++EFSL  +    F M G+++CSM KE 
Sbjct: 1  FNNFKKEQARLGIPADPNLWTEDHVLEWLEWAVKEFSLSPIDFSNFDMSGRELCSMSKEE 60

Query: 69 FLARAPPFMGDILWEHLEILQKAN 92
          FL RA PF GDILWEHL+ L+KA+
Sbjct: 61 FLERA-PFPGDILWEHLQNLRKAS 83

Length = 83

>gnl|CDD|128547 smart00251, SAM_PNT, SAM / Pointed domain

 Score =  107 bits (269), Expect = 5e-32
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 9  FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKES 68
            ++EKEQ RL I  DP+ W+E +V +WL WA++EFSL  +   +F M GK++CSM KE 
Sbjct: 1  PPNFEKEQKRLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEE 60

Query: 69 FLARAPPFMGDILWEHLEILQKA 91
          FL RA PF GDILW HL+IL+KA
Sbjct: 61 FLERA-PFGGDILWSHLQILRKA 82

A subfamily of the SAM domain. Length = 82

>gnl|CDD|176084 cd08534, SAM_PNT-GABP-alpha, Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain

 Score = 99.7 bits (249), Expect = 7e-29
 Identities = 37/77 (48%), Positives = 52/77 (67%)

Query: 14 KEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARA 73
          KEQ RL I  DP +W+E +V  WL WA++EF L G+ L  + + G+++CS+ +E FL R 
Sbjct: 8  KEQERLKIPYDPMEWTEDHVLHWLQWAVKEFGLTGINLSDWNITGRELCSLTQEEFLQRV 67

Query: 74 PPFMGDILWEHLEILQK 90
          P   GDI W HLE+L+K
Sbjct: 68 PKDPGDIFWTHLELLRK 84

SAM Pointed domain of GA-binding protein (GABP) alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction. Length = 89

>gnl|CDD|188876 cd08203, SAM_PNT, Sterile alpha motif (SAM)/Pointed domain

 Score = 83.9 bits (208), Expect = 6e-23
 Identities = 29/67 (43%), Positives = 44/67 (65%)

Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
          DP +W+  +V QWL W  ++FSL+ +   +F M GK++C++ KE F  RAP   GD+L  
Sbjct: 1  DPLEWTPEHVQQWLSWVSKKFSLDPIDPDRFPMNGKELCALSKEDFRERAPSRGGDVLAS 60

Query: 84 HLEILQK 90
          HL +L+K
Sbjct: 61 HLALLRK 67

Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have a C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be a SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcriptional regulators are proto-oncogenes. They are prone to chromosomal translocations resulting in gene fusions. Chimeric proteins with SAM Pointed domains were found in a number of different human tumors including myeloid leukemia, lymphoblastic leukemia, Ewing's sarcoma and primitive neuroectodermal tumor. Members of this family are potential targets for cancer therapy. Length = 67

>gnl|CDD|176085 cd08535, SAM_PNT-Tel_Yan, Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein

 Score = 73.2 bits (180), Expect = 1e-18
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
           PRQWS  +V QWL WA  EFSL  +  + F M GK +C + KE F  R  P  GD+L+ 
Sbjct: 2  QPRQWSREDVLQWLRWAENEFSLPPIDSNTFEMNGKALCLLTKEDFRYRC-PHAGDVLYN 60

Query: 84 HLEILQK 90
           L+ L K
Sbjct: 61 LLQHLLK 67

SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genes and is involved in MAPK signaling. They participate in regulation of different processes during embryoniv development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy. Length = 68

>gnl|CDD|188878 cd08532, SAM_PNT-PDEF-like, Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor

 Score = 72.8 bits (179), Expect = 2e-18
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG 78
          L I  DP QWS +NV  WL W   ++ L       F M GK +C++ +E F+ RAP   G
Sbjct: 8  LGISPDPYQWSTANVQAWLQWTEHQYRLPPNPPRCFQMNGKTLCALSEEDFVRRAPQ-GG 66

Query: 79 DILWEHLEILQKANA 93
          D L   LEI + A  
Sbjct: 67 DTLHAQLEIWKSAAE 81

SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts. Length = 81

>gnl|CDD|188877 cd08531, SAM_PNT-ERG_FLI-1, Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors

 Score = 66.3 bits (162), Expect = 7e-16
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILW 82
          DP  W+  +V QW+ WAI+E+SL+ V + +F  + GK++C M ++ FL     + GD+L 
Sbjct: 4  DPLLWTREHVRQWVEWAIKEYSLKDVDVSRFDNIDGKELCRMTRDDFLRLTSAYNGDVLI 63

Query: 83 EHLEILQK 90
           HL  L++
Sbjct: 64 SHLCYLRQ 71

SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy. Length = 75

>gnl|CDD|176090 cd08540, SAM_PNT-ERG, Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor

 Score = 58.4 bits (141), Expect = 8e-13
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPFMGDILW 82
          DP  WS  +V QWL WA++E+ L  V +  F  + GK++C M KE F    P +  DIL 
Sbjct: 4  DPTLWSTDHVRQWLEWAVKEYGLPDVDVLLFQNIDGKELCKMTKEDFQRLTPSYNADILL 63

Query: 83 EHLEILQK 90
           HL  L++
Sbjct: 64 SHLHYLRE 71

SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), which leads to modification of the local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with other neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are potential targets for cancer therapy. Length = 75

>gnl|CDD|176086 cd08536, SAM_PNT-Mae, Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
          DPR WS  +V  WL W    + LE V L +F M GK +C M  E FL R  P  G +L+E
Sbjct: 1  DPRSWSREHVRTWLRWVSARYQLEVVDLDKFLMNGKGLCLMSLEGFLYRV-PVGGKLLYE 59

Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis. Length = 66

>gnl|CDD|188883 cd08541, SAM_PNT-FLI-1, Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator

 Score = 57.4 bits (138), Expect = 4e-12
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPF 76
          R+ +  DP  WS+ +V QWL WAI+E+ L  +    F  M GK++C M KE FL     +
Sbjct: 10 RVIVPADPTLWSQDHVRQWLEWAIKEYGLMEIDTSLFQNMDGKELCKMSKEDFLRLTSLY 69

Query: 77 MGDILWEHLEILQKANA 93
            ++L  HL  L+++++
Sbjct: 70 NTEVLLSHLNYLRESSS 86

SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy. Length = 91

>gnl|CDD|188881 cd08538, SAM_PNT-ESE-2-like, Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 25 PRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARA 73
          P  W++ +V +WL +   ++ L+   ++   F + G  +CSM +E FL  A
Sbjct: 13 PEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFLDAA 63

SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
cd08542	88	SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed do	100.0
cd08543	89	SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed do	100.0
cd08534	89	SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Point	100.0
cd08541	91	SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed do	100.0
smart00251	82	SAM_PNT SAM / Pointed domain. A subfamily of the S	100.0
cd08532	76	SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointe	100.0
cd08540	75	SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed doma	100.0
cd08533	71	SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed	100.0
cd08531	75	SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointe	100.0
PF02198	84	SAM_PNT: Sterile alpha motif (SAM)/Pointed domain;	100.0
cd08535	68	SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed	99.98
cd08203	66	SAM_PNT Sterile alpha motif (SAM)/Pointed domain.	99.97
cd08536	66	SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed doma	99.96
cd08538	78	SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Point	99.96
cd08757	68	SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed doma	99.96
cd08539	74	SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Point	99.95
cd08537	78	SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Point	99.95
KOG3804|consensus	390		99.41
KOG3805|consensus	361		97.5
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	96.09
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	96.04
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	95.02
KOG4375|consensus	272		93.66
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	93.61

>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1

Probab=100.00  E-value=1.2e-41  Score=232.39  Aligned_cols=87  Identities=57%  Similarity=1.123  Sum_probs=84.3

Q ss_pred             HHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHH
Q psy15117          7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLE   86 (114)
Q Consensus         7 ~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~   86 (114)
                      +|||||+||++|++||.||+.||++||.+||.|+++||+|+++++++|+|||++||.||+|||++++|+++|||||+||+
T Consensus         1 ~~~~~f~~~q~rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~~~GdIL~~HL~   80 (88)
T cd08542           1 ATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPDFVGDILWEHLE   80 (88)
T ss_pred             CcchhHhHhhhhcCCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCCCccHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHccc
Q psy15117         87 ILQKANA   93 (114)
Q Consensus        87 ~Lk~~~~   93 (114)
                      +||+.+.
T Consensus        81 ~L~k~~~   87 (88)
T cd08542          81 ILQKEDV   87 (88)
T ss_pred             HHHHhcc
Confidence            9998753

SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.

>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2

Probab=100.00  E-value=8e-41  Score=228.71  Aligned_cols=87  Identities=54%  Similarity=1.007  Sum_probs=84.6

Q ss_pred             HHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHH
Q psy15117          7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLE   86 (114)
Q Consensus         7 ~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~   86 (114)
                      +||+||+||++|++||.||..||++||.+||+|+++||+|+++++++|.|||++||.||++||++++|+++|||||+||+
T Consensus         1 ~~f~~f~k~~~rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~ap~~~GdIL~~HL~   80 (89)
T cd08543           1 ATFSGFKKEQRRLGIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQFGMNGQELCNLGKERFLELAPDFVGDILWEHLE   80 (89)
T ss_pred             CchhHHHHHhHhcCCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCChHHHHcCCHHHHHhHcCCCcchHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999879999999999


Q ss_pred             HHHHccc
Q psy15117         87 ILQKANA   93 (114)
Q Consensus        87 ~Lk~~~~   93 (114)
                      .|.+.++
T Consensus        81 ~l~k~~~   87 (89)
T cd08543          81 QMIKENQ   87 (89)
T ss_pred             HHHHHHc
Confidence            9998765

SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.

>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain

Probab=100.00  E-value=1.1e-39  Score=223.11  Aligned_cols=86  Identities=41%  Similarity=0.872  Sum_probs=82.7

Q ss_pred             HHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117          9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL   88 (114)
Q Consensus         9 ~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L   88 (114)
                      -|+|+||++|++||.||..||++||.+||.|+++||+|+++++++|+|||++||.||+|||++++|.++|||||+||++|
T Consensus         3 ~~~~~keq~rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~~~GdiL~~hLe~L   82 (89)
T cd08534           3 DSNYRKEQERLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPKDPGDIFWTHLELL   82 (89)
T ss_pred             chhhHHHHHhcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCCCccHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHcccc
Q psy15117         89 QKANAK   94 (114)
Q Consensus        89 k~~~~~   94 (114)
                      |+++..
T Consensus        83 rk~~~~   88 (89)
T cd08534          83 RKCKFV   88 (89)
T ss_pred             HHcccc
Confidence            998653

SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.

>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator

Probab=100.00  E-value=9.7e-37  Score=209.32  Aligned_cols=83  Identities=33%  Similarity=0.702  Sum_probs=79.8

Q ss_pred             hHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117         11 SWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ   89 (114)
Q Consensus        11 ~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk   89 (114)
                      ++.++++||+||.||..||++||++||+|+++||+|+++++++| .|||++||.||++||++++|.++|||||+||++||
T Consensus         3 ~~~~~~~rl~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~~m~Gk~LC~LskedF~~~~p~~~gdiLw~HL~~Lr   82 (91)
T cd08541           3 NMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATSLYNTEVLLSHLSYLR   82 (91)
T ss_pred             CccccceeeeCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCCHHHHHhCCHHHHHHHcCCCccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999 59999999999999999999999999999999999


Q ss_pred             Hccc
Q psy15117         90 KANA   93 (114)
Q Consensus        90 ~~~~   93 (114)
                      +++.
T Consensus        83 ~~~~   86 (91)
T cd08541          83 ESSS   86 (91)
T ss_pred             hCcc
Confidence            9863

SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>smart00251 SAM_PNT SAM / Pointed domain

Probab=100.00  E-value=9e-36  Score=200.58  Aligned_cols=82  Identities=56%  Similarity=1.048  Sum_probs=79.5

Q ss_pred             HHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117          9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL   88 (114)
Q Consensus         9 ~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L   88 (114)
                      +++|+++++++.||.||..||++||.+||.|+++||+|+++++++|+|||++||.||++||++++| .+|||||+||++|
T Consensus         1 ~~~~~~~~~~~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~GdiL~~hL~~L   79 (82)
T smart00251        1 PPNFEKEQKRLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP-FGGDILWSHLQIL   79 (82)
T ss_pred             CccHHHHHHHhCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC-CchHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999999 6999999999999


Q ss_pred             HHc
Q psy15117         89 QKA   91 (114)
Q Consensus        89 k~~   91 (114)
                      |++
T Consensus        80 k~~   82 (82)
T smart00251       80 RKA   82 (82)
T ss_pred             HhC
Confidence            974

A subfamily of the SAM domain

>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor

Probab=100.00  E-value=1.1e-35  Score=198.15  Aligned_cols=75  Identities=39%  Similarity=0.722  Sum_probs=72.3

Q ss_pred             HHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117         16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        16 ~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~   92 (114)
                      |++|+||.||+.||++||.+||+|+++||+|++ ++++|+|||++||.||+|||++++|. +|||||+||++||++.
T Consensus         1 c~~L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~-~~~~F~mnG~~LC~ls~edF~~r~p~-~GdiL~~hL~~lk~a~   75 (76)
T cd08532           1 CKLLGISPDPYQWSPANVQKWLLWTEHQYRLPP-PPRCFELNGKDLCALSEEDFRRRAPQ-GGDTLHAQLDIWKSAA   75 (76)
T ss_pred             CCcCCCCCChhhcCHHHHHHHHHHHHHHhCCCC-chhcCCCCHHHHHcCCHHHHHHHcCC-chhHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999 99999999999999999999999997 9999999999999864

SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.

>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor

Probab=100.00  E-value=5.3e-35  Score=194.47  Aligned_cols=72  Identities=38%  Similarity=0.806  Sum_probs=70.0

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117         21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~   92 (114)
                      ||.||+.||++||.+||+|+++||+|+++++++| .|||++||.||++||++++|+++|||||+||++||+++
T Consensus         1 iP~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~~~~F~~m~Gk~LC~LskedF~~~ap~~~GdiL~~HL~~Lr~~~   73 (75)
T cd08540           1 VPADPTLWSTDHVRQWLEWAVKEYGLPDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETP   73 (75)
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHhCCCCCCcccccCCCHHHHHhCCHHHHHHHcCCCCchHHHHHHHHHHhCC
Confidence            7999999999999999999999999999999999 59999999999999999999889999999999999985

SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po

>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family

Probab=100.00  E-value=8.7e-35  Score=191.69  Aligned_cols=70  Identities=64%  Similarity=1.255  Sum_probs=68.5

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117         22 VKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA   91 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~   91 (114)
                      |.||..||++||.+||.|+++||+|+++++++|+|||++||.||++||++++|+++|||||+||++||+.
T Consensus         1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~ls~edF~~~~p~~~GdIL~~hL~~L~k~   70 (71)
T cd08533           1 PKDPRLWTETHVRQWLLWAVNEFSLEGVNFQKFCMSGRDLCALGKERFLELAPDFVGDILWEHLEILQKE   70 (71)
T ss_pred             CcChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHHHcCCCcchHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999988999999999999985

SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.

>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors

Probab=100.00  E-value=9.1e-35  Score=193.28  Aligned_cols=72  Identities=36%  Similarity=0.829  Sum_probs=70.1

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117         21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~   92 (114)
                      ||.||..||++||.+||.|+++||+|+++++++| +|||++||.||++||++++|+++|||||+||++||+++
T Consensus         1 vP~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~~m~Gk~LC~lt~edF~~~~~~~~GdiL~~hL~~Lr~~~   73 (75)
T cd08531           1 VPADPTLWTREHVRQWLEWAVKEYGLQDVDVSRFQNIDGKELCKMTKEDFLRLTSAYNADVLLSHLSYLRESP   73 (75)
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCChHHHHcCCHHHHHHHcCCCcchHHHHHHHHHHhCC
Confidence            7999999999999999999999999999999999 99999999999999999999889999999999999975

SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=100.00  E-value=1.6e-33  Score=189.21  Aligned_cols=83  Identities=43%  Similarity=0.878  Sum_probs=75.5

Q ss_pred             HhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117         10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ   89 (114)
Q Consensus        10 ~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk   89 (114)
                      ++|+++++++.||.||..||++||.+||.|++++|+|+++++++|+|||++||.||++||.+++|...||+||+||++||
T Consensus         2 ~~~~~~~~~~~~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~~~G~~Ly~~L~~Lk   81 (84)
T PF02198_consen    2 SDFRKECKRLWLPKDPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPSGYGDILYSHLQLLK   81 (84)
T ss_dssp             HHHHHHHCTTTSCSSGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTHTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhCCCCChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999558999999999999


Q ss_pred             Hcc
Q psy15117         90 KAN   92 (114)
Q Consensus        90 ~~~   92 (114)
                      +++
T Consensus        82 ~~~   84 (84)
T PF02198_consen   82 KCC   84 (84)
T ss_dssp             HH-
T ss_pred             Hcc
Confidence            864

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....

>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein

Probab=99.98  E-value=1.3e-32  Score=179.96  Aligned_cols=67  Identities=46%  Similarity=0.837  Sum_probs=65.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         23 KDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      .||+.||++||.+||+|+++||+|+++++++|+|||++||.||+|||++++| ++|||||+||++||+
T Consensus         1 ~DP~~Wt~~~V~~WL~wa~~ef~L~~i~~~~F~mnGk~LC~ls~edF~~r~p-~~GdiL~~hL~~L~~   67 (68)
T cd08535           1 LQPRYWSRDDVLQWLRWAENEFSLPPIDSNTFEMNGKALCLLTKEDFRYRSP-HSGDVLYELLQHLLK   67 (68)
T ss_pred             CChhhCCHHHHHHHHHHHHHhcCCCCCChhccCCCHHHHhcCCHHHHhhhCC-CchHHHHHHHHHHHh
Confidence            4999999999999999999999999999999999999999999999999999 599999999999997

SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.

>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain

Probab=99.97  E-value=9.5e-31  Score=169.57  Aligned_cols=66  Identities=53%  Similarity=1.077  Sum_probs=64.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      ||..||++||.+||.|+++||+|+.+++++|+|||++||.||++||.+++|. +|||||+||++||+
T Consensus         1 dP~~Wt~~~V~~Wl~w~~~~f~L~~~~~~~F~m~G~~Lc~ls~edF~~~~p~-~GdiL~~hL~~l~~   66 (66)
T cd08203           1 DPRLWTKEHVLQWLEWAVKEFSLPPIDFSKFNMNGKELCLLTKEDFLRRAPS-GGDILYEHLQLLRK   66 (66)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCCCChhhcCCCHHHHHhCCHHHHHHHcCC-cHHHHHHHHHHHhC
Confidence            8999999999999999999999999999999999999999999999999997 99999999999984

Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti

>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog

Probab=99.96  E-value=3e-30  Score=167.84  Aligned_cols=64  Identities=42%  Similarity=0.847  Sum_probs=62.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL   88 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L   88 (114)
                      ||+.||++||.+||.|+++||+|+++++++|+|||++||.||++||++|+|. +|||||+||+.-
T Consensus         1 DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~~F~m~Gk~LC~ls~edF~~r~P~-~GdiL~~~lq~~   64 (66)
T cd08536           1 DPRSWSREHVRTWLRWVSARYQLEVVDLDKFLMNGKGLCLMSLEGFLYRVPV-GGKLLYEDFQRR   64 (66)
T ss_pred             CcccCCHHHHHHHHHHHHHHhCCCCCCccccCCCHHHHHcCCHHHHHhhcCC-ccHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999997 999999999863

Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.

>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators

Probab=99.96  E-value=5.2e-30  Score=171.68  Aligned_cols=72  Identities=24%  Similarity=0.571  Sum_probs=68.0

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhcCCCC--CCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117         22 VKDPRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK   94 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~~~ef~L~~--v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~   94 (114)
                      -.||..||++||.+||.|+++||+|++  +++++|.|||++||+||+|||++++|+ +||+||++|+.+|..+.+
T Consensus         4 ~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~-~GdvLy~~lq~~~~~~~~   77 (78)
T cd08538           4 SVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI-CGEYLYFILQNIRTQGYS   77 (78)
T ss_pred             CCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc-chHHHHHHHHHHHhcCcc
Confidence            479999999999999999999999976  799999999999999999999999996 999999999999988764

SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators

Probab=99.96  E-value=3e-29  Score=163.63  Aligned_cols=65  Identities=28%  Similarity=0.705  Sum_probs=62.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCC--CCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ   89 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~--v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk   89 (114)
                      ||..||++||.+||.|++++|+|+.  +++++|+|||++||.||++||++++|+ +|||||+||+.++
T Consensus         1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~-~GdiL~~~l~~~~   67 (68)
T cd08757           1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS-YGSLLYAELQRLT   67 (68)
T ss_pred             CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC-cHHHHHHHHHHHh
Confidence            8999999999999999999999874  789999999999999999999999997 9999999999886

SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.

>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators

Probab=99.95  E-value=6.5e-28  Score=160.05  Aligned_cols=70  Identities=23%  Similarity=0.514  Sum_probs=64.1

Q ss_pred             CCCcCCCCHHHHHHHHHHH--HHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117         22 VKDPRQWSESNVAQWLCWA--IREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~--~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~   92 (114)
                      ..||+.||+.||.+||+|+  .++|++.++++++|.|||++||.|++|+|+.++| ++|||||+||+.||.++
T Consensus         2 ~~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~~~~p-~~GdiLy~~l~~~~~~~   73 (74)
T cd08539           2 EIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAG-TAGQLLYSNLQHLKWNG   73 (74)
T ss_pred             CCChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHhhcCC-chHHHHHHHHHHHhcCC
Confidence            4699999999999999999  5667777889999999999999999999998888 59999999999999875

SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators

Probab=99.95  E-value=7.5e-28  Score=160.97  Aligned_cols=69  Identities=19%  Similarity=0.566  Sum_probs=66.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHH--HhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117         22 VKDPRQWSESNVAQWLCWAI--REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA   91 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~~--~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~   91 (114)
                      -.||+.||+.||.+||+|++  +||+|.+|++++|.|||++||.|++|+|+.++|+ +|||||+||+.|+..
T Consensus         7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p-~GdiLy~~L~~l~~~   77 (78)
T cd08537           7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP-LGDQLYAQLRELTSS   77 (78)
T ss_pred             CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC-hHHHHHHHHHHHhcc
Confidence            57999999999999999999  7799999999999999999999999999999998 999999999999864

SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.

>KOG3804|consensus

Probab=99.41  E-value=1.8e-13  Score=114.10  Aligned_cols=74  Identities=31%  Similarity=0.670  Sum_probs=69.3

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhcCCC--CCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117         20 NIVKDPRQWSESNVAQWLCWAIREFSLE--GVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK   94 (114)
Q Consensus        20 ~iP~DP~~WS~~~V~~Wl~W~~~ef~L~--~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~   94 (114)
                      -+..+|..|++++|.+|+.|+.++|+|+  .+++..|.|+|.+||.+|++||+.++|. .||+||++|+.++.....
T Consensus        57 ~l~~~p~~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~te~d~~~r~~~-~gd~l~~~lq~~~~~~~~  132 (390)
T KOG3804|consen   57 TLSVEPSLWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSSTEEDFRVRAGT-LGDVLYNSLQEKKEQSED  132 (390)
T ss_pred             ccccCcccccccchhHHHHHHHHhccCCcccccccccCCCcchhccccHHHhhhcCCC-ccchhhhhhhhhhccccc
Confidence            4889999999999999999999999999  7888999999999999999999999996 899999999999986543

>KOG3805|consensus

Probab=97.50  E-value=1.9e-05  Score=65.07  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCC----hHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMG----KESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        19 l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt----~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      ...+.||. |++.||..|+.|+.-+|-++++-.+...+.+++.|.+.    .+.|.++.| .+|++|.+++..++.
T Consensus       150 gqs~~D~~-ws~~~v~~~~~~T~~Q~~~PP~~vq~~~~~~~E~~~~~~t~~hp~f~~~~~-y~G~vLpa~~~i~~s  223 (361)
T KOG3805|consen  150 GQSFEDHY-WSPFEVQAQLSTTELQSYLPPQLVQLYRLYLAENNHRLDTPMHPVFGNRSP-YGGTVLPAELPIYKS  223 (361)
T ss_pred             cccccccc-cCHHHHHHHHhhhhhhhcCCcHHHHHHHHHHHHhccccccccchhhccCCC-CCCcccccccccchh
Confidence            45788888 99999999999999999999877677788889999888    899999999 699999999999984

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=96.09  E-value=0.0061  Score=37.68  Aligned_cols=59  Identities=24%  Similarity=0.499  Sum_probs=39.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHH
Q psy15117         27 QWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQ   89 (114)
Q Consensus        27 ~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk   89 (114)
                      .|+.++|.+||.-    ..|+..  .+..=.++|..|+.||.+|+...--...|+  .|...++.||
T Consensus         2 ~W~~~~V~~WL~~----~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk   64 (64)
T PF00536_consen    2 EWSVEDVSEWLKS----LGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK   64 (64)
T ss_dssp             GTSHHHHHHHHHH----TTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH----CCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            6999999999973    344332  122236899999999999998854322363  4566666554

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=96.04  E-value=0.005  Score=38.21  Aligned_cols=60  Identities=23%  Similarity=0.392  Sum_probs=40.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCCh-HHhhcCChHHHhhhCCCCChH--HHHHHHHHH
Q psy15117         25 PRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRG-KDICSMGKESFLARAPPFMGD--ILWEHLEIL   88 (114)
Q Consensus        25 P~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G-~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~L   88 (114)
                      |..||.++|.+||.-.    +++..  .+....++| ..|-.||.+++...--...|+  .|...++.|
T Consensus         1 v~~w~~~~v~~WL~~~----gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~L   65 (66)
T PF07647_consen    1 VSTWSPEDVAEWLKSL----GLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQEL   65 (66)
T ss_dssp             GGGHCHHHHHHHHHHT----TCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHC----CcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            4689999999999822    44332  245668999 999999999997443222342  345555444

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>cd00166 SAM Sterile alpha motif

Probab=95.02  E-value=0.016  Score=34.80  Aligned_cols=48  Identities=21%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCCh
Q psy15117         27 QWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMG   78 (114)
Q Consensus        27 ~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~G   78 (114)
                      .|+.++|.+||.    +.+++..  .+....++|..|+.|+.+|+....-...|
T Consensus         1 ~w~~~~V~~wL~----~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g   50 (63)
T cd00166           1 NWSPEDVAEWLE----SLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPG   50 (63)
T ss_pred             CCCHHHHHHHHH----HcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHH
Confidence            599999999996    3344322  23344679999999999999855433235

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>KOG4375|consensus

Probab=93.66  E-value=0.029  Score=45.36  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHHHHH-HhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCCh
Q psy15117         26 RQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG   78 (114)
Q Consensus        26 ~~WS~~~V~~Wl~W~~-~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~G   78 (114)
                      ..||+.||..||.|.- .||.=   -+..-.|||+-|=.++++||+.+-..+.|
T Consensus       208 ~~Wsk~DV~dWLssl~L~E~~~---aF~d~eIdG~hLp~l~k~df~~LGVTRVg  258 (272)
T KOG4375|consen  208 QRWSKIDVNDWLSSLHLIEYDD---AFHDIEIDGKHLPLLRKLDFRGLGVTRVG  258 (272)
T ss_pred             ceeccccHHHHHHhhhhhhcch---hhhhcccccchhhhcchhhhhcccchhhh
Confidence            4799999999999863 23321   13345899999999999999999876666

>smart00454 SAM Sterile alpha motif

Probab=93.61  E-value=0.071  Score=32.15  Aligned_cols=61  Identities=21%  Similarity=0.330  Sum_probs=37.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCC-hHHHhhhCCCCCh--HHHHHHHHHHH
Q psy15117         25 PRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMG-KESFLARAPPFMG--DILWEHLEILQ   89 (114)
Q Consensus        25 P~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt-~edF~~~~p~~~G--diL~~hL~~Lk   89 (114)
                      +..|+..+|.+||.-.    .++..  .+..-.++|.+|+.++ .+++...--...|  ..|...++.||
T Consensus         1 ~~~w~~~~v~~wL~~~----g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~   66 (68)
T smart00454        1 VSQWSPESVADWLESI----GLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLK   66 (68)
T ss_pred             CCCCCHHHHHHHHHHC----ChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            4689999999999742    23221  2234478999999999 6655554332234  34444444443

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2jv3_A	110	Ets-1 Pnt Domain (29-138) Nmr Structure Ensemble Le		6e-29
2kmd_A	113	Ras Signaling Requires Dynamic Properties Of Ets1 F		7e-29
1sxd_A	91	Solution Structure Of The Pointed (Pnt) Domain From		4e-15
1sxe_A	97	The Solution Structure Of The Pointed (Pnt) Domain		7e-10
2dkx_A	96	Solution Structure Of The Sam_pnt-Domain Of Ets Tra		1e-09
1lky_B	77	Structure Of The Wild-Type Tel-Sam Polymer Length =		1e-09
1x66_A	98	Solution Structure Of The Sam_pnt-Domain Of The Hum		2e-09
2ytu_A	128	Solution Structure Of The Sam_pnt-Domain Of The Hum		2e-09
2qb0_B	241	Structure Of The 2tel Crystallization Module Fused		3e-09
2qar_B	93	Structure Of The 2tel Crystallization Module Fused		1e-08
2qb1_A	78	2tel Crystallization Module Length = 78		1e-08
2qar_A	86	Structure Of The 2tel Crystallization Module Fused		3e-08
1lky_A	77	Structure Of The Wild-Type Tel-Sam Polymer Length =		7e-08
2qb0_A	77	Structure Of The 2tel Crystallization Module Fused		7e-08
1ji7_A	89	Crystal Structure Of Tel Sam Polymer Length = 89		4e-07
1sv0_A	85	Crystal Structure Of Yan-SamMAE-Sam Complex Length		2e-06

>pdb|2JV3|A Chain A, Ets-1 Pnt Domain (29-138) Nmr Structure Ensemble Length = 110

Iteration: 1
 Score =  122 bits (305), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 72/94 (76%)
Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 17  MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 76
Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct: 77  LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 110

>pdb|2KMD|A Chain A, Ras Signaling Requires Dynamic Properties Of Ets1 For Phosphorylation- Enhanced Binding To Co-Activator Cbp Length = 113

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 72/94 (76%)
Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 20  MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 79
Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct: 80  LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 113

>pdb|1SXD|A Chain A, Solution Structure Of The Pointed (Pnt) Domain From Mgabpa Length = 91

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 7  ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
          A+   + KEQ RL I  DP  WS   V  W+ W ++EFS+  + L    + G+++CS+ +
Sbjct: 5  AALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQ 64
Query: 67 ESFLARAPPFMGDILWEHLEILQK 90
          E F  R P   G+ILW HLE+L+K
Sbjct: 65 EDFFQRVP--RGEILWSHLELLRK 86

>pdb|1SXE|A Chain A, The Solution Structure Of The Pointed (Pnt) Domain From The Transcrition Factor Erg Length = 97

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPF 76
          R+ +  DP  WS  +V QWL WA++E+ L  V +  F  + GK++C M K+ F    P +
Sbjct: 20 RVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSY 79
Query: 77 MGDILWEHLEILQKA 91
            DIL  HL  L++ 
Sbjct: 80 NADILLSHLHYLRET 94

>pdb|2DKX|A Chain A, Solution Structure Of The Sam_pnt-Domain Of Ets Transcription Factor Pdef (Prostate Ets) Length = 96

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG 78
          LNI  DP  WS SNV +WL W   ++ L  +      + GK++C+M +E F  R+ P  G
Sbjct: 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRS-PLGG 76
Query: 79 DILWEHLEILQKA 91
          D+L  HL+I + A
Sbjct: 77 DVLHAHLDIWKSA 89

>pdb|1LKY|B Chain B, Structure Of The Wild-Type Tel-Sam Polymer Length = 77

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GKD+  + KE F  R+ P  GD+L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKDLLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LEILQK 90
          L+ + K
Sbjct: 71 LQHILK 76

>pdb|1X66|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The Human Friend Leukemiaintegration 1 Transcription Factor Length = 98

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPF 76
          R+ +  DP  W++ +V QWL WAI+E+SL  +    F  M GK++C M KE FL     +
Sbjct: 17 RVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 76
Query: 77 MGDILWEHLEILQKANA 93
            ++L  HL  L+++++
Sbjct: 77 NTEVLLSHLSYLRESSS 93

>pdb|2YTU|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The Human Friend Leukemiaintegration 1 Transcription Factor Length = 128

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 18  RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPF 76
           R+ +  DP  W++ +V QWL WAI+E+SL  +    F  M GK++C M KE FL     +
Sbjct: 31  RVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 90
Query: 77  MGDILWEHLEILQKA 91
             ++L  HL  L+++
Sbjct: 91  NTEVLLSHLSYLRES 105

>pdb|2QB0|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4 Lysozyme With An Ala-Gly-Pro Linker. Length = 241

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD+L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LE-ILQKA 91
          L+ IL++A
Sbjct: 71 LQHILKQA 78

>pdb|2QAR|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4 Lysozyme With A Helical Linker. Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD+L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LEILQK 90
          L+ + K
Sbjct: 71 LQHILK 76

>pdb|2QB1|A Chain A, 2tel Crystallization Module Length = 78

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD+L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LE-ILQKA 91
          L+ IL +A
Sbjct: 71 LQHILAQA 78

>pdb|2QAR|A Chain A, Structure Of The 2tel Crystallization Module Fused To T4 Lysozyme With A Helical Linker. Length = 86

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD L+E 
Sbjct: 13 PIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYEL 71
Query: 85 LEILQKANAKG 95
          L+ + K    G
Sbjct: 72 LQHILKQRPGG 82

>pdb|1LKY|A Chain A, Structure Of The Wild-Type Tel-Sam Polymer Length = 77

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDRLYEL 70
Query: 85 LEILQK 90
          L+ + K
Sbjct: 71 LQHILK 76

>pdb|2QB0|A Chain A, Structure Of The 2tel Crystallization Module Fused To T4 Lysozyme With An Ala-Gly-Pro Linker. Length = 77

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYEL 70
Query: 85 LEILQK 90
          L+ + K
Sbjct: 71 LQHILK 76

>pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer Length = 89

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
          P  WS  +VAQWL WA  EFSL  +  + F   GK +  + KE F  R+ P  GD L+E 
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEXNGKALLLLTKEDFRYRS-PHSGDELYEL 70
Query: 85 LEILQK 90
          L+ + K
Sbjct: 71 LQHILK 76

>pdb|1SV0|A Chain A, Crystal Structure Of Yan-SamMAE-Sam Complex Length = 85

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
          Q+  ++  DPR WS  +V  +L + +REF L  +    F M GK +C + +  F  R P 
Sbjct: 1  QLPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60
Query: 76 FMGDILWEHLEIL 88
            GD+L   L++L
Sbjct: 61 -AGDVLHNVLQML 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2jv3_A	110	ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, M	2e-40
1sxd_A	91	GA repeat binding protein, alpha; alpha helical, t	3e-35
1x66_A	98	Friend leukemia integration 1 transcription factor	1e-34
2ytu_A	128	Friend leukemia integration 1 transcription factor	1e-33
2dkx_A	96	SAM pointed domain-containing ETS transcription fa	3e-32
1sxe_A	97	Transcriptional regulator ERG; alpha helical, sign	3e-31
1sv0_A	85	ETS DNA-binding protein pokkuri; alpha-helix, 3(10	3e-30
2qar_B	93	Telsam domain; polymer, crystallization modules, s	3e-30
1ji7_A	89	ETS-related protein TEL1; helical polymer, transcr	6e-30
1sv0_C	82	Modulator of the activity of ETS CG15085-PA; alpha	5e-26
2qb0_B	241	Telsam domain - lysozyme chimera; helical polymer,	8e-23
2e8p_A	92	ELF3 protein; cell-free protein synthesis, protein	2e-20

>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A* Length = 110

 Score =  128 bits (324), Expect = 2e-40
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
           M++ALKA+F+ + KEQ RL I KDPRQW+E++V  W+ WA+ EFSL+GV   +F M G  
Sbjct: 17  MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 76

Query: 61  ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
           +C++GKE FL  AP F+GDILWEHLEILQK + K
Sbjct: 77  LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 110

>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1 Length = 91

 Score =  115 bits (289), Expect = 3e-35
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 7  ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
          A+   + KEQ RL I  DP  WS   V  W+ W ++EFS+  + L    + G+++CS+ +
Sbjct: 5  AALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQ 64

Query: 67 ESFLARAPPFMGDILWEHLEILQKA 91
          E F  R P   G+ILW HLE+L+K 
Sbjct: 65 EDFFQRVPR--GEILWSHLELLRKY 87

>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  113 bits (285), Expect = 1e-34
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 11 SWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESF 69
          +    + R+ +  DP  W++ +V QWL WAI+E+SL  +    F  M GK++C M KE F
Sbjct: 10 NMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDF 69

Query: 70 LARAPPFMGDILWEHLEILQKANAK 94
          L     +  ++L  HL  L+++++ 
Sbjct: 70 LRATTLYNTEVLLSHLSYLRESSSG 94

>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 128

 Score =  112 bits (281), Expect = 1e-33
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 1   MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
           M E       +    + R+ +  DP  W++ +V QWL WAI+E+SL  +    F  M GK
Sbjct: 14  MDEKNGPPPPNMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGK 73

Query: 60  DICSMGKESFLARAPPFMGDILWEHLEILQKAN 92
           ++C M KE FL     +  ++L  HL  L++++
Sbjct: 74  ELCKMNKEDFLRATTLYNTEVLLSHLSYLRESS 106

>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score =  107 bits (269), Expect = 3e-32
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 6  KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMG 65
           +     E     LNI  DP  WS SNV +WL W   ++ L  +      + GK++C+M 
Sbjct: 5  SSGLKDIETACKLLNITADPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMS 64

Query: 66 KESFLARAPPFMGDILWEHLEILQKANAK 94
          +E F  R+ P  GD+L  HL+I + A + 
Sbjct: 65 EEQFRQRS-PLGGDVLHAHLDIWKSAASG 92

>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1 Length = 97

 Score =  105 bits (263), Expect = 3e-31
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKES 68
           +    + R+ +  DP  WS  +V QWL WA++E+ L  V +  F  + GK++C M K+ 
Sbjct: 12 PNMTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDD 71

Query: 69 FLARAPPFMGDILWEHLEILQK 90
          F    P +  DIL  HL  L++
Sbjct: 72 FQRLTPSYNADILLSHLHYLRE 93

>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A Length = 85

 Score =  102 bits (256), Expect = 3e-30
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
          Q+  ++  DPR WS  +V  +L + +REF L  +    F M GK +C + +  F  R P 
Sbjct: 1  QLPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60

Query: 76 FMGDILWEHLEILQKAN 92
            GD+L   L++L   +
Sbjct: 61 -AGDVLHNVLQMLIIES 76

>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli} Length = 93

 Score =  102 bits (256), Expect = 3e-30
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
          ++  ++   P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P
Sbjct: 3  RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-P 61

Query: 76 FMGDILWEHLEILQKAN 92
            GD+L+E L+ + K  
Sbjct: 62 HSGDVLYELLQHILKQR 78

>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A Length = 89

 Score =  101 bits (254), Expect = 6e-30
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
          ++  ++   P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P
Sbjct: 3  RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-P 61

Query: 76 FMGDILWEHLEILQK 90
            GD L+E L+ + K
Sbjct: 62 HSGDELYELLQHILK 76

>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 Length = 82

 Score = 91.8 bits (228), Expect = 5e-26
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 20 NIVKDPRQWSESNVAQWL--CWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFM 77
           +  DPR W+ ++V +WL          +      +F M GK +C M  + +L R  P  
Sbjct: 6  GLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVG 64

Query: 78 GDILWEHLE-ILQKANAK 94
          G +L+      L +A ++
Sbjct: 65 GKMLYRDFRVRLARAMSR 82

>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli} Length = 241

 Score = 87.7 bits (216), Expect = 8e-23
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
          ++  ++   P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P
Sbjct: 3  RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-P 61

Query: 76 FMGDILWEHLEILQK 90
            GD+L+E L+ + K
Sbjct: 62 HSGDVLYELLQHILK 76

>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 77.8 bits (191), Expect = 2e-20
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 23 KDPRQWSESNVAQWLCWAIRE--FSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDI 80
          + P+ WS++ V  W+ + + +  +    +   +  M G  +C+   E       P  GD 
Sbjct: 22 EQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPL-GDQ 80

Query: 81 LWEHLEILQKA 91
          L   L  L  +
Sbjct: 81 LHAQLRDLTSS 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2jv3_A	110	ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, M	100.0
1sxd_A	91	GA repeat binding protein, alpha; alpha helical, t	100.0
1sxe_A	97	Transcriptional regulator ERG; alpha helical, sign	100.0
1x66_A	98	Friend leukemia integration 1 transcription factor	100.0
2dkx_A	96	SAM pointed domain-containing ETS transcription fa	100.0
1sv0_A	85	ETS DNA-binding protein pokkuri; alpha-helix, 3(10	100.0
2ytu_A	128	Friend leukemia integration 1 transcription factor	99.98
2e8p_A	92	ELF3 protein; cell-free protein synthesis, protein	99.96
1ji7_A	89	ETS-related protein TEL1; helical polymer, transcr	99.96
2qar_B	93	Telsam domain; polymer, crystallization modules, s	99.96
1sv0_C	82	Modulator of the activity of ETS CG15085-PA; alpha	99.96
2qb0_B	241	Telsam domain - lysozyme chimera; helical polymer,	99.95
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	98.53
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	98.16
1wwu_A	99	Hypothetical protein FLJ21935; structural genomics	97.75
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	97.72
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	97.66
2e8m_A	99	Epidermal growth factor receptor kinase substrate	97.65
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	97.48
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	97.4
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	97.34
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	97.27
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	97.15
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	96.92
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	96.82
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	96.42
1uqv_A	85	STE50 protein; SAM, sterIle alpha motif, helical,	96.07
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	96.05
2eap_A	90	Lymphocyte cytosolic protein 2; cell-free protein	95.68
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	93.57
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	84.0
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	82.3
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	81.96

>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*

Probab=100.00  E-value=3.5e-41  Score=236.94  Aligned_cols=93  Identities=58%  Similarity=1.110  Sum_probs=90.4

Q ss_pred             ChHHHHHHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHH
Q psy15117          1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDI   80 (114)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gdi   80 (114)
                      ||+||+++|++|++|+++++||.||..||++||.+||+|+++||+|+++++++|+|||++||.||+|||++++|+++|||
T Consensus        17 ~~~~l~~~~~~~~~e~~rl~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p~~~Gdi   96 (110)
T 2jv3_A           17 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVGDI   96 (110)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcCCCcHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999768999


Q ss_pred             HHHHHHHHHHccc
Q psy15117         81 LWEHLEILQKANA   93 (114)
Q Consensus        81 L~~hL~~Lk~~~~   93 (114)
                      ||+||++||+.++
T Consensus        97 L~~hL~~Lk~~~~  109 (110)
T 2jv3_A           97 LWEHLEILQKEDV  109 (110)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999865

>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1

Probab=100.00  E-value=2.9e-38  Score=215.61  Aligned_cols=85  Identities=40%  Similarity=0.893  Sum_probs=82.2

Q ss_pred             HHHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHH
Q psy15117          6 KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHL   85 (114)
Q Consensus         6 ~~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL   85 (114)
                      -++|++|+||+++++||.||..||++||.+||.|++++|+|+++++++|+|||++||.||+|||++++|.  |||||+||
T Consensus         4 ~~~~~~~~ke~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~f~m~G~~LC~ls~edF~~~~p~--GdiL~~hL   81 (91)
T 1sxd_A            4 MAALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPR--GEILWSHL   81 (91)
T ss_dssp             HHHHHHHHHHHTTTTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCTT--CHHHHHHH
T ss_pred             HHHHHHHHHHhHHhCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHCCC--chHHHHHH
Confidence            3799999999999999999999999999999999999999999999999999999999999999999994  99999999


Q ss_pred             HHHHHcc
Q psy15117         86 EILQKAN   92 (114)
Q Consensus        86 ~~Lk~~~   92 (114)
                      ++||++.
T Consensus        82 ~~L~k~~   88 (91)
T 1sxd_A           82 ELLRKYV   88 (91)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999875

>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1

Probab=100.00  E-value=5.5e-36  Score=206.37  Aligned_cols=83  Identities=34%  Similarity=0.722  Sum_probs=79.4

Q ss_pred             HhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117         10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEIL   88 (114)
Q Consensus        10 ~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L   88 (114)
                      .+|++|+++++||.||..||++||.+||+|+++||+|+++++++| +|||++||.||++||++++|+++|||||+||++|
T Consensus        12 p~~~~e~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~L   91 (97)
T 1sxe_A           12 PNMTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYL   91 (97)
T ss_dssp             CCCSTTTTSSSSCSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGSTTCCHHHHTTCCHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             CchHhhhhhhcCCcchhccCHHHHHHHHHHHHHhcCCCCCCHHhcCCCCHHHHHhCCHHHHHHHcCCCchHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999 8999999999999999999877899999999999


Q ss_pred             HHcc
Q psy15117         89 QKAN   92 (114)
Q Consensus        89 k~~~   92 (114)
                      |+++
T Consensus        92 k~~~   95 (97)
T 1sxe_A           92 RETP   95 (97)
T ss_dssp             TTSC
T ss_pred             HhCc
Confidence            9874

>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=203.63  Aligned_cols=83  Identities=34%  Similarity=0.708  Sum_probs=79.1

Q ss_pred             hHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117         11 SWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ   89 (114)
Q Consensus        11 ~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk   89 (114)
                      .|.+|+++++||.||..||++||++||+|+++||+|+++++++| +|||++||.||+|||++++|+++|||||+||++||
T Consensus        10 ~~~~e~~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~~GdiL~~hL~~Lk   89 (98)
T 1x66_A           10 NMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLR   89 (98)
T ss_dssp             CCCCSSSCCCCCSSGGGCCTTHHHHHHHHHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CccccceecCCCCChhhcCHHHHHHHHHHHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCCchHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999 89999999999999999998778999999999999


Q ss_pred             Hccc
Q psy15117         90 KANA   93 (114)
Q Consensus        90 ~~~~   93 (114)
                      ++..
T Consensus        90 ~~~s   93 (98)
T 1x66_A           90 ESSS   93 (98)
T ss_dssp             TCSS
T ss_pred             hcCC
Confidence            8754

>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=198.50  Aligned_cols=84  Identities=36%  Similarity=0.671  Sum_probs=79.4

Q ss_pred             HHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117          9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL   88 (114)
Q Consensus         9 ~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L   88 (114)
                      ..++.++|++++||.||..||++||.+||+|+++||+|+++++.+|+|||++||.||+|||++++| .+|||||+||++|
T Consensus         8 ~~d~~~~~~~l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~f~m~G~~LC~lskedF~~~~p-~~GdiL~~hL~~L   86 (96)
T 2dkx_A            8 LKDIETACKLLNITADPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRSP-LGGDVLHAHLDIW   86 (96)
T ss_dssp             THHHHHHHHTTTCCSCGGGCCSSTHHHHHHHHHHHTTCCCCHHHHSSCCHHHHHHSCHHHHHHHCS-SSTHHHHHHHHHH
T ss_pred             CCchhhhhhhcCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHhCCHHHHHHHcC-cchHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999 5899999999999


Q ss_pred             HHccc
Q psy15117         89 QKANA   93 (114)
Q Consensus        89 k~~~~   93 (114)
                      |++..
T Consensus        87 k~~~s   91 (96)
T 2dkx_A           87 KSAAS   91 (96)
T ss_dssp             HHHHS
T ss_pred             HhccC
Confidence            98654

>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A

Probab=100.00  E-value=6.7e-34  Score=191.88  Aligned_cols=77  Identities=31%  Similarity=0.624  Sum_probs=72.9

Q ss_pred             HhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117         17 IRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK   94 (114)
Q Consensus        17 ~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~   94 (114)
                      ..++||.||..||++||.+||+|+++||+|+++++++|+|||++||.||+|||++++|. +|||||+||++||+++.+
T Consensus         2 l~~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~-~GdiL~~hL~~Lk~~~~~   78 (85)
T 1sv0_A            2 LPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG-AGDVLHNVLQMLIIESHS   78 (85)
T ss_dssp             CCTTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT-THHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC-chHHHHHHHHHHHHhhhh
Confidence            35789999999999999999999999999999999999999999999999999999995 999999999999997543

>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.98  E-value=5.5e-34  Score=204.99  Aligned_cols=83  Identities=34%  Similarity=0.705  Sum_probs=79.3

Q ss_pred             HhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117         10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEIL   88 (114)
Q Consensus        10 ~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L   88 (114)
                      ++|++++++++||.||..||++||++||+|+++||+|+++++++| +|||++||.||+|||++++|+++|||||+||++|
T Consensus        23 p~~~~e~~rl~IP~DP~~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~~GDiL~~hL~~L  102 (128)
T 2ytu_A           23 PNMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYL  102 (128)
T ss_dssp             CSCCCCSSCCSCCSCGGGCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CchhhhhhhccCCcchhhCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCCchHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999 8999999999999999999877899999999999


Q ss_pred             HHcc
Q psy15117         89 QKAN   92 (114)
Q Consensus        89 k~~~   92 (114)
                      |++.
T Consensus       103 r~~~  106 (128)
T 2ytu_A          103 RESS  106 (128)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9983

>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.96  E-value=2.7e-30  Score=176.71  Aligned_cols=73  Identities=21%  Similarity=0.459  Sum_probs=67.4

Q ss_pred             hcCCCCCcCCCCHHHHHHHHHHHHHhcCC--CCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117         18 RLNIVKDPRQWSESNVAQWLCWAIREFSL--EGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA   91 (114)
Q Consensus        18 ~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L--~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~   91 (114)
                      +.-.|.||..||++||.+||+|++++|++  .+|++++|+|||++||.||+|||++++|+ +|||||+||++||++
T Consensus        17 ~~w~~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~-~GdiL~~hL~~L~~~   91 (92)
T 2e8p_A           17 ASWLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-LGDQLHAQLRDLTSS   91 (92)
T ss_dssp             CTTSSSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGG-GHHHHHHHHHHHHHC
T ss_pred             ccccCCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCC-cHHHHHHHHHHHHhc
Confidence            34569999999999999999999997555  68999999999999999999999999997 999999999999985

>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A

Probab=99.96  E-value=1.3e-29  Score=172.10  Aligned_cols=75  Identities=39%  Similarity=0.646  Sum_probs=69.4

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117         19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK   94 (114)
Q Consensus        19 l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~   94 (114)
                      ..||.||..||++||.+||.|+.+||+|+++++++|+|||++||.||++||+.++|. +|||||+||++|++++..
T Consensus         6 ~~l~~DP~~WS~~~V~~WL~w~~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~-~GdiL~~hL~~l~~~~~~   80 (89)
T 1ji7_A            6 AHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGDELYELLQHILKQRDH   80 (89)
T ss_dssp             GGGCSCGGGCCHHHHHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTT-THHHHHHHHHHHHHC---
T ss_pred             CCCCCChhhCCHHHHHHHHHHHHHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCC-chHHHHHHHHHHHhCccc
Confidence            358999999999999999999999999999999999999999999999999999996 699999999999998654

>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}

Probab=99.96  E-value=2.9e-29  Score=171.45  Aligned_cols=75  Identities=39%  Similarity=0.661  Sum_probs=70.7

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHccccc
Q psy15117         20 NIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKG   95 (114)
Q Consensus        20 ~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~~   95 (114)
                      .+|.||..||++||.+||+|+.++|+|+++++++|+|||++||.||++||+.++|. +|||||+||++||+.++..
T Consensus         7 ~l~~DP~~WS~~~V~~WL~w~~~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~-~GdiL~~hL~~Lk~~~~~~   81 (93)
T 2qar_B            7 HLRLQPIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGDVLYELLQHILKQRDLE   81 (93)
T ss_dssp             GGCSCGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTT-THHHHHHHHHHHHHHHHHH
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCc-chHHHHHHHHHHHHhcHHH
Confidence            47889999999999999999999999999999999999999999999999999995 8999999999999987553

>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1

Probab=99.96  E-value=1.5e-29  Score=168.93  Aligned_cols=72  Identities=26%  Similarity=0.531  Sum_probs=67.0

Q ss_pred             hcCCCCCcCCCCHHHHHHHHHHHHHhcCC--CCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         18 RLNIVKDPRQWSESNVAQWLCWAIREFSL--EGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        18 ~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L--~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      +++||.||..||++||.+||.|+.++|++  +++++++|+|||++||.||++||++++| .+|||||+||+.+-+
T Consensus         4 ~l~i~~dP~~Ws~~~V~~WL~w~~~e~~l~l~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~GdiL~~hL~~~l~   77 (82)
T 1sv0_C            4 SDGLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP-VGGKMLYRDFRVRLA   77 (82)
T ss_dssp             TTSSBSSGGGCCHHHHHHHHHHHHHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT-TTHHHHHHHHHHHHH
T ss_pred             hccCCCChhhCCHHHHHHHHHHHHHHhCCCCCCCccccCCCCHHHHHhCCHHHHHhhCC-CchHHHHHHHHHHHH
Confidence            67999999999999999999999999877  7788899999999999999999999999 699999999995544

>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}

Probab=99.95  E-value=1.8e-28  Score=190.10  Aligned_cols=76  Identities=38%  Similarity=0.678  Sum_probs=71.9

Q ss_pred             HHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117         16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        16 ~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~   92 (114)
                      +.++.||.||+.||++||.+||+|+++||+|+++++++|+|||++||.||++||+.++| ++|||||+||++|++.+
T Consensus         3 ~~~~~~p~dP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~m~~~~F~~~~p-~~G~iL~~hl~~l~k~~   78 (241)
T 2qb0_B            3 RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSP-HSGDVLYELLQHILKQA   78 (241)
T ss_dssp             CCCGGGGSCGGGCCHHHHHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCT-TTHHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCHHhcCCChHHHHHcCHHHHHhhcC-CcchhhHHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999 59999999999877765

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=98.53  E-value=3.8e-08  Score=66.03  Aligned_cols=79  Identities=11%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             HHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHccc
Q psy15117         16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKANA   93 (114)
Q Consensus        16 ~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~~~   93 (114)
                      ...-.++.+|..||.++|.+||......|+-..-.+..-.|||++|..||++|++...+-..|.  .||..+..||.+..
T Consensus         5 ~~~~~~~~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~lk~~~~   84 (89)
T 1pk1_B            5 RANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNGRDH   84 (89)
T ss_dssp             ------CCCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHHC----
T ss_pred             CCCCCCCCCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHHHcccc
Confidence            3445578999999999999999877433332222234557999999999999998765544564  57888888876654


Q ss_pred             c
Q psy15117         94 K   94 (114)
Q Consensus        94 ~   94 (114)
                      +
T Consensus        85 ~   85 (89)
T 1pk1_B           85 H   85 (89)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=98.16  E-value=4.9e-06  Score=56.48  Aligned_cols=72  Identities=24%  Similarity=0.355  Sum_probs=51.8

Q ss_pred             CCCCcCCCCHHHHHHHHHHHH-HhcCCCCCCCCCCCCChHHhhcCChHHHhh--hCCCCCh--HHHHHHHHHHHHccccc
Q psy15117         21 IVKDPRQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLA--RAPPFMG--DILWEHLEILQKANAKG   95 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~-~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~--~~p~~~G--diL~~hL~~Lk~~~~~~   95 (114)
                      .+.++..||.++|.+||.-.- .+|. +.  +.  +|||+.|..||.+|+..  .--...|  -.|+..++.||+.....
T Consensus        13 ~~~~v~~Ws~edV~~WL~~~Gl~~Y~-~~--F~--~IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~~~   87 (97)
T 2d8c_A           13 TMKEVVYWSPKKVADWLLENAMPEYC-EP--LE--HFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHHME   87 (97)
T ss_dssp             CCSCCSSCCTTHHHHHHHHTTCTTTT-TT--TT--TCCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSCCC
T ss_pred             CCCchhhCCHHHHHHHHHHcCCHHHH-HH--HH--cCCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            467889999999999997321 2222 22  22  49999999999999987  3322334  67999999999876554


Q ss_pred             cc
Q psy15117         96 VA   97 (114)
Q Consensus        96 ~~   97 (114)
                      ..
T Consensus        88 ~~   89 (97)
T 2d8c_A           88 AH   89 (97)
T ss_dssp             CC
T ss_pred             HH
Confidence            33

>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}

Probab=97.75  E-value=5.9e-05  Score=51.78  Aligned_cols=65  Identities=17%  Similarity=0.259  Sum_probs=52.1

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117         21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA   91 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~   91 (114)
                      ++.+|.. ++++|.+||+  .+.|+=.  -...| ..+|.+|..|+++|+...|| .-|--||..|..-|..
T Consensus        18 ~~L~~~S-sp~EV~~WL~--~kgFS~~--tv~~Lg~ltGaqLf~Ltk~eL~~vCg-~EG~RlysqL~~qk~~   83 (99)
T 1wwu_A           18 QPLTYES-GPDEVRAWLE--AKAFSPR--IVENLGILTGPQLFSLNKEELKKVCG-EEGVRVYSQLTMQKAF   83 (99)
T ss_dssp             CCCCTTC-CHHHHHHHHH--HHTCCTT--HHHHTTSSCHHHHHTCCHHHHHHHHT-TTHHHHHHHHHHHHHH
T ss_pred             cccCCCC-CHHHHHHHHH--HcCCCHH--HHHHHcCCCHHHHHcCCHHHHHHHCc-chhHHHHHHHHHHHHH
Confidence            3445555 8999999997  5666543  23455 78999999999999999999 4899999999998875

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=97.72  E-value=2.8e-05  Score=49.65  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHc
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKA   91 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~   91 (114)
                      ....||.++|.+||......+.--.-.+..-.++|..|+.|+.+|+...--...|+  .++..++.||..
T Consensus         2 ~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~~   71 (78)
T 3bs7_A            2 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK   71 (78)
T ss_dssp             CGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHhH
Confidence            34689999999999875111221111233447899999999999998876544675  477888888753

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=97.66  E-value=6.4e-05  Score=49.79  Aligned_cols=72  Identities=14%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhh--hCCCCChHH--HHHHHHHHHHccc
Q psy15117         20 NIVKDPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLA--RAPPFMGDI--LWEHLEILQKANA   93 (114)
Q Consensus        20 ~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~--~~p~~~Gdi--L~~hL~~Lk~~~~   93 (114)
                      ..+.++..||.++|.+||.-.-  +.....  .+..=.|+|..|+.||.+|+..  .--...|+.  |+.-++.||..+.
T Consensus        12 ~~~~~v~~Wt~~dV~~WL~~~g--l~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~~   89 (91)
T 1v85_A           12 LVHKAVDKWTTEEVVLWLEQLG--PWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGPS   89 (91)
T ss_dssp             HHHSCGGGCCHHHHHHHHHHHC--GGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhccC
Confidence            3567899999999999997531  100111  1222279999999999999986  443335654  7788888886554

>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=3.6e-05  Score=52.87  Aligned_cols=64  Identities=20%  Similarity=0.426  Sum_probs=50.5

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117         21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA   91 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~   91 (114)
                      ++.+|.. ++++|.+||+  .+.|+-  .-...| ..+|.+|..|+++|+...||  -|--||..|..-|..
T Consensus        28 ~~L~~~S-sp~EV~~WL~--~kgFS~--~tv~~Lg~ltGaqLl~Ltk~eL~~vCg--EG~RlysqL~vqk~~   92 (99)
T 2e8m_A           28 INITYDS-TPEDVKTWLQ--SKGFNP--VTVNSLGVLNGAQLFSLNKDELRTVCP--EGARVYSQITVQKAA   92 (99)
T ss_dssp             CCCCTTC-CTTHHHHHHH--HHTCCH--HHHHHTSSSCHHHHHHCCHHHHHHHCT--THHHHHHHHHHHHHH
T ss_pred             eecCCCC-CHHHHHHHHH--HcCCCH--HHHHHHcCCCHHHHHcCCHHHHHHHCC--chHHHHHHHHHHHHH
Confidence            4455555 8999999997  555554  222445 68999999999999999999  599999999988765

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=6.2e-05  Score=50.89  Aligned_cols=69  Identities=14%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhcCCCC--C--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHcc
Q psy15117         20 NIVKDPRQWSESNVAQWLCWAIREFSLEG--V--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKAN   92 (114)
Q Consensus        20 ~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~--v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~~   92 (114)
                      ..+.++..||.++|.+||.-.    .+..  .  .+..=.|+|..|+.|+.+|+...--...|+  .++..++.||...
T Consensus        22 ~~~~~v~~Ws~~~V~~WL~~l----gl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~~   96 (103)
T 2e8o_A           22 ELHPDYKTWGPEQVCSFLRRG----GFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIH   96 (103)
T ss_dssp             CCCSCGGGCHHHHHHHHHHHH----TCCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred             ccccChhhCCHHHHHHHHHHc----CCChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhH
Confidence            357799999999999999743    3432  1  122337999999999999988755434575  4778888887654

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=97.40  E-value=0.00013  Score=49.79  Aligned_cols=76  Identities=14%  Similarity=0.233  Sum_probs=49.7

Q ss_pred             HHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHc
Q psy15117         16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKA   91 (114)
Q Consensus        16 ~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~   91 (114)
                      ...-..|.++..||.++|.+||.-....+.--.-.+..-.|+|..|..|+.+|+...--...|+  .++..++.||..
T Consensus        14 ~~~~~~~~~v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~   91 (106)
T 3bs5_A           14 RTKTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK   91 (106)
T ss_dssp             ------CCCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCcccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            3344678899999999999999865211111011123336899999999999998765444675  478888888753

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=97.34  E-value=0.00013  Score=47.19  Aligned_cols=67  Identities=16%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHcc
Q psy15117         22 VKDPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKAN   92 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~~   92 (114)
                      |.++..||.++|.+||.-.    .|...  .+..-.++|..|+.||.+|+...--...|+  .+...++.|+...
T Consensus         4 ~~~v~~Ws~~~V~~WL~~l----gl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~~   74 (81)
T 3bq7_A            4 TRPVHLWGTEEVAAWLEHL----SLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRSS   74 (81)
T ss_dssp             -CCGGGCCHHHHHHHHHHT----TCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC--
T ss_pred             CCChhhCCHHHHHHHHHHC----CCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999743    34332  233447999999999999998754323564  5667777776544

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=97.27  E-value=0.00032  Score=46.85  Aligned_cols=66  Identities=21%  Similarity=0.462  Sum_probs=49.7

Q ss_pred             CCCcCCCCHHHHHHHHHHH---HHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCCh--HHHHHHHHHHHHcc
Q psy15117         22 VKDPRQWSESNVAQWLCWA---IREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG--DILWEHLEILQKAN   92 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~---~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~G--diL~~hL~~Lk~~~   92 (114)
                      ......||+++|.+||.-.   ..+|     .+..-.|+|++|..||.+|+.+.--...|  ..++.-++.|+...
T Consensus         8 ~~~v~~Wt~~~V~~WL~~l~~~l~~Y-----~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~   78 (91)
T 1wwv_A            8 MEPVETWTPGKVATWLRGLDDSLQDY-----PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALS   78 (91)
T ss_dssp             CCCTTTCCTTTHHHHHHHHCHHHHTS-----CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHhcCCccccc-----cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHh
Confidence            4567899999999999854   4566     24444689999999999998876433456  45788888887654

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=97.15  E-value=0.00012  Score=48.56  Aligned_cols=67  Identities=10%  Similarity=0.176  Sum_probs=44.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCCh--HHHHHHHHHHHHcc
Q psy15117         23 KDPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMG--DILWEHLEILQKAN   92 (114)
Q Consensus        23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~G--diL~~hL~~Lk~~~   92 (114)
                      .++..||.++|.+||.-..   .+...  .+..-.|||..|..||.+|+....+-..|  -.++..++.|+...
T Consensus        12 ~~v~~Ws~edV~~wL~~l~---gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~~~~   82 (89)
T 1kw4_A           12 PPISSWSVDDVSNFIRELP---GCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIKEVR   82 (89)
T ss_dssp             CCGGGCCHHHHHHHHHTST---TCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC---
T ss_pred             CCchhCCHHHHHHHHHHCc---ChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            4789999999999996320   22211  11223699999999999999544443356  45777777776543

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=96.92  E-value=0.00033  Score=44.77  Aligned_cols=67  Identities=16%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHcc
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKAN   92 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~~   92 (114)
                      .+..||+++|.+||.-..  -.+...  .+..-.++|..|..|+.+|+...--...|+  .++..++.|+..+
T Consensus         3 ~v~~Ws~~~V~~WL~~l~--~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~   73 (80)
T 3bs5_B            3 PVSKWSPSQVVDWMKGLD--DCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALN   73 (80)
T ss_dssp             CGGGCCHHHHHHHHHTSC--GGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Confidence            467899999999998210  001111  122236899999999999997765434564  5777888887643

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.82  E-value=0.00041  Score=44.72  Aligned_cols=68  Identities=16%  Similarity=0.316  Sum_probs=46.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCCh--HHHHHHHHHHHHcc
Q psy15117         23 KDPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMG--DILWEHLEILQKAN   92 (114)
Q Consensus        23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~G--diL~~hL~~Lk~~~   92 (114)
                      ..+..||+++|.+||.-..  -.|...  .+..-.++|..|..|+.+|+...--...|  ..++..++.|+...
T Consensus         6 ~~v~~Wt~~~V~~WL~~l~--~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~   77 (83)
T 2ean_A            6 SGVSKWSPSQVVDWMKGLD--DCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALN   77 (83)
T ss_dssp             CSGGGCCTTHHHHHHTTSC--GGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHH--hhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            4678999999999997110  012211  12223689999999999999887543456  45777888887643

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=96.42  E-value=0.00052  Score=43.19  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=43.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHHc
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQKA   91 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~   91 (114)
                      ....||.++|.+||.-.    .|...  .+..-.+||..|+.|+.+|+...--...|+  .+...++.||..
T Consensus         3 ~v~~Ws~~~V~~WL~~~----gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~   70 (74)
T 2gle_A            3 MVHEWSVQQVSHWLVGL----SLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMS   70 (74)
T ss_dssp             CGGGCCSGGGHHHHHHT----TTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHH
T ss_pred             CcccCCHHHHHHHHHHC----CCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999743    23221  234457899999999999976544333564  356666666643

>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A

Probab=96.07  E-value=0.006  Score=40.69  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhcCCCCCC--CCCC---CCChHHhhcCChHHHhhhCCCCCh--HHHHHHHHHHHHc
Q psy15117         22 VKDPRQWSESNVAQWLCWAIREFSLEGVT--LHQF---YMRGKDICSMGKESFLARAPPFMG--DILWEHLEILQKA   91 (114)
Q Consensus        22 P~DP~~WS~~~V~~Wl~W~~~ef~L~~v~--~~~F---~m~G~~LC~Lt~edF~~~~p~~~G--diL~~hL~~Lk~~   91 (114)
                      +.+-..||++||.+|+....   .++..|  ..+|   .|+|.-|-.|+.||...++....|  --|-.-++.||.+
T Consensus         6 ~~~v~~Wt~~~V~~W~~~~l---g~~d~d~~~~~f~~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr~~   79 (85)
T 1uqv_A            6 NEDFSQWSVDDVITWCISTL---EVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMRDS   79 (85)
T ss_dssp             CCCTTTCCHHHHHHHHHHHH---SSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHC
T ss_pred             ccccccCCHHHHHHHHHHHh---CCCCccHHHHHHHHcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHHHh
Confidence            66778999999999985443   444433  4566   799999999999999999987555  5566677777643

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=96.05  E-value=0.002  Score=40.95  Aligned_cols=61  Identities=21%  Similarity=0.357  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHHH
Q psy15117         26 RQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQK   90 (114)
Q Consensus        26 ~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~   90 (114)
                      ..||+++|.+||.-.    .|+..  .+..-.++|..|+.||.+|+...--...|+  .+...++.|+.
T Consensus         3 ~~Ws~~~V~~WL~~l----gl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~   67 (76)
T 2f3n_A            3 QLWSKFDVGDWLESI----HLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDG   67 (76)
T ss_dssp             GGCCHHHHHHHHHHT----TCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC--
T ss_pred             hhCCHHHHHHHHHHC----CCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence            479999999999732    34322  123347999999999999996655333564  34455555543

>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.68  E-value=0.00065  Score=45.81  Aligned_cols=63  Identities=11%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhcCCCCCCC--CCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         23 KDPRQWSESNVAQWLCWAIREFSLEGVTL--HQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~--~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      .+...||+++|..||.    +-++...+.  ....|||+.|..||..||.. .|..---+|-.--+.+-+
T Consensus        17 seV~~Wsp~~VadWLk----k~g~~~cd~lv~Kh~IDG~~lL~LtE~Dlrk-~Pkl~~p~~~k~~q~in~   81 (90)
T 2eap_A           17 SEVLGWDPDSLADYFK----KLNYKDCEKAVKKYHIDGARFLNLTENDIQK-FPKLRVPILSKLSQEINK   81 (90)
T ss_dssp             HHHTTCCTTTHHHHHH----HTTCHHHHHHHHHTTCCHHHHHTCCHHHHTT-SCTTTHHHHHHHHHHHHT
T ss_pred             ccccccCHHHHHHHHH----HcCCchHHHHHHHhccCchhhhcccHHHhcc-CCccccHHHHHHHHHHhc
Confidence            4568999999999994    223322322  24569999999999999976 554334444444444443

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.57  E-value=0.084  Score=35.04  Aligned_cols=52  Identities=15%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC---CCChHHhhcCChHHHhhhCC
Q psy15117         19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF---YMRGKDICSMGKESFLARAP   74 (114)
Q Consensus        19 l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F---~m~G~~LC~Lt~edF~~~~p   74 (114)
                      -..|.|-..||.++|..||+.    ..|+.--.+.|   .|+|.-|+.|++|+...-..
T Consensus         9 w~pP~dLs~lSv~EVs~~Lr~----igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~   63 (84)
T 2dkz_A            9 WQPPADLSGLSIEEVSKSLRF----IGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFK   63 (84)
T ss_dssp             CCCCSCCSSCCHHHHHHHGGG----TCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSC
T ss_pred             CCCchhhhhcCHHHHHHHHHH----cCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcC
Confidence            358999999999999999974    23432112333   68899999999999876554

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=84.00  E-value=0.17  Score=36.62  Aligned_cols=41  Identities=17%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCCC--CCCCCCChHHhhcCChHH
Q psy15117         25 PRQWSESNVAQWLCWAIREFSLEGVT--LHQFYMRGKDICSMGKES   68 (114)
Q Consensus        25 P~~WS~~~V~~Wl~W~~~ef~L~~v~--~~~F~m~G~~LC~Lt~ed   68 (114)
                      -..||.++|.+||...+   .|+..-  +..-.|||++|-.|+.++
T Consensus        78 V~nWTvedV~~WL~~~v---~LpqY~~~Fr~~~I~G~~LprLa~~~  120 (150)
T 2k60_A           78 VYNWTVDEVVQWLITYV---ELPQYEETFRKLQLSGHAMPRLAVTN  120 (150)
T ss_dssp             HHHCCHHHHHHHHHHHH---CCTTHHHHHHHHCCSTTHHHHHSSCH
T ss_pred             cccCCHHHHHHHHHHcC---CcHHHHHHHHHcCCCHHHHHhhcccc
Confidence            45799999999997654   365431  334589999999999886

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=82.30  E-value=0.2  Score=36.25  Aligned_cols=43  Identities=14%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhcCCCCCC--CCCCCCChHHhhcCChHH
Q psy15117         23 KDPRQWSESNVAQWLCWAIREFSLEGVT--LHQFYMRGKDICSMGKES   68 (114)
Q Consensus        23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v~--~~~F~m~G~~LC~Lt~ed   68 (114)
                      +.-..||.++|.+||...+   .|+..-  +..-.|||++|-.|+..+
T Consensus        76 s~V~nWTvedV~~WL~~~v---~LpqY~~~Fr~~~IdG~~LprL~~~~  120 (150)
T 2l5y_A           76 SEVHNWTLEDTLQWLIEFV---ELPQYEKNFRDNNVKGTTLPRIAVHE  120 (150)
T ss_dssp             SHHHHCCHHHHHHHHHHHT---CCTTSHHHHHHHHCSSSTTTTCCSSS
T ss_pred             CcchhCCHHHHHHHHHHcC---CcHHHHHHHHHcCCCHHHhhhhhhcc
Confidence            3346799999999998743   455432  233479999999999865

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=81.96  E-value=1.2  Score=34.83  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCC-CCCh--HHHHHHHHHHHHc
Q psy15117         25 PRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAP-PFMG--DILWEHLEILQKA   91 (114)
Q Consensus        25 P~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p-~~~G--diL~~hL~~Lk~~   91 (114)
                      -..|+.++|.+||.    +..|+..  .+....++|..|-.||.+|...-.+ ...|  ..|-..++.|+..
T Consensus        15 ~~~W~~e~V~~WLe----~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~   82 (265)
T 3tad_C           15 FAKWTKEQVCSWLA----EQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSE   82 (265)
T ss_dssp             GGGSCHHHHHHHHH----HTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHC
T ss_pred             hhhCChHHHHHHHH----HHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            56899999999997    2455432  3456789999999999999974444 2233  3455556666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d2jv3a_	110	a.60.1.1 (A:) Ets-1 transcription factor pointed d	9e-42
d1sxda_	91	a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus muscu	4e-36
d1sxea_	97	a.60.1.1 (A:) Transcriptional regulator ERG {Human	2e-31
d1sv0a_	77	a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan	5e-30
d1ji7a_	77	a.60.1.1 (A:) Etv6 transcription factor pointed do	5e-29
d1sv0c_	82	a.60.1.1 (C:) Modulator of the activity of Ets (MA	7e-26

>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: GABP-alpha subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (292), Expect = 4e-36
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 7  ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
          A+   + KEQ RL I  DP  WS   V  W+ W ++EFS+  + L    + G+++CS+ +
Sbjct: 5  AALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQ 64

Query: 67 ESFLARAPPFMGDILWEHLEILQKA 91
          E F  R P   G+ILW HLE+L+K 
Sbjct: 65 EDFFQRVPR--GEILWSHLELLRKY 87

>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Transcriptional regulator ERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (262), Expect = 2e-31
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 13 EKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLA 71
             + R+ +  DP  WS  +V QWL WA++E+ L  V +  F  + GK++C M K+ F  
Sbjct: 15 TTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQR 74

Query: 72 RAPPFMGDILWEHLEILQKA 91
            P +  DIL  HL  L++ 
Sbjct: 75 LTPSYNADILLSHLHYLRET 94

>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Ets DNA-binding protein pokkuri (Yan)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  100 bits (251), Expect = 5e-30
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 20 NIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD 79
          ++  DPR WS  +V  +L + +REF L  +    F M GK +C + +  F  R P   GD
Sbjct: 4  SLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG-AGD 62

Query: 80 ILWEHLEILQK 90
          +L   L++L  
Sbjct: 63 VLHNVLQMLII 73

>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Etv6 transcription factor pointed domain (Tel SAM)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.9 bits (244), Expect = 5e-29
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
           P  WS  +VAQWL WA  EFSL  +  + F M GK +  + KE F  R+ P  GD L+E
Sbjct: 11 QPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYE 69

Query: 84 HLEILQK 90
           L+ + K
Sbjct: 70 LLQHILK 76

>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE, CG15085-PA) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 82

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Modulator of the activity of Ets (MAE, CG15085-PA)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 90.3 bits (224), Expect = 7e-26
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 20 NIVKDPRQWSESNVAQWL--CWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFM 77
           +  DPR W+ ++V +WL          +      +F M GK +C M  + +L R  P  
Sbjct: 6  GLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVG 64

Query: 78 GDILWEHLEIL 88
          G +L+    + 
Sbjct: 65 GKMLYRDFRVR 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2jv3a_	110	Ets-1 transcription factor pointed domain {Mouse (	100.0
d1sxda_	91	GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 1	100.0
d1sxea_	97	Transcriptional regulator ERG {Human (Homo sapiens	100.0
d1sv0a_	77	Ets DNA-binding protein pokkuri (Yan) {Fruit fly (	100.0
d1ji7a_	77	Etv6 transcription factor pointed domain (Tel SAM)	99.97
d1sv0c_	82	Modulator of the activity of Ets (MAE, CG15085-PA)	99.96
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	97.66
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	97.5
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	97.48
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	97.1
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	96.88
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	85.62

>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: GABP-alpha subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-39  Score=217.79  Aligned_cols=85  Identities=40%  Similarity=0.890  Sum_probs=82.0

Q ss_pred             HHHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHH
Q psy15117          6 KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHL   85 (114)
Q Consensus         6 ~~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL   85 (114)
                      -+||+||+||+++|+||.||..||++||.+||.|+++||+|+++++++|+|||++||.||++||++++|  .|||||+||
T Consensus         4 ~~~~~~~~ke~~rl~iP~DP~~WT~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~r~p--~GdiL~~hL   81 (91)
T d1sxda_           4 MAALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP--RGEILWSHL   81 (91)
T ss_dssp             HHHHHHHHHHHTTTTCCSSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCT--TCHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHHHHHHhCCCCCChhhcCCCHHHHHhCCHHHHHHHCC--ChhHHHHHH
Confidence            379999999999999999999999999999999999999999999999999999999999999999999  499999999


Q ss_pred             HHHHHcc
Q psy15117         86 EILQKAN   92 (114)
Q Consensus        86 ~~Lk~~~   92 (114)
                      ++||+..
T Consensus        82 ~~Lk~~~   88 (91)
T d1sxda_          82 ELLRKYV   88 (91)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9999864

>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Transcriptional regulator ERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=199.97  Aligned_cols=81  Identities=35%  Similarity=0.735  Sum_probs=76.6

Q ss_pred             HHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         12 WEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        12 ~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      +.++++++.||.||..||++||.+||.|+++||+|++++++.| +|||++||.||++||++|+|..+|||||+||++||+
T Consensus        14 ~~~~~~~l~iP~DP~~Wt~~~V~~WL~W~~~ef~L~~i~~~~F~~m~G~~LC~lt~edF~~r~p~~~GdiL~~hL~~Lk~   93 (97)
T d1sxea_          14 MTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRE   93 (97)
T ss_dssp             CSTTTTSSSSCSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGSTTCCHHHHTTCCHHHHTTTSCHHHHHHHHHHHHHHTT
T ss_pred             CcccchhcCCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhcCCCCHHHHHhcCHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999 699999999999999999996679999999999998


Q ss_pred             cc
Q psy15117         91 AN   92 (114)
Q Consensus        91 ~~   92 (114)
                      ++
T Consensus        94 ~~   95 (97)
T d1sxea_          94 TP   95 (97)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Ets DNA-binding protein pokkuri (Yan)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=5e-34  Score=187.67  Aligned_cols=74  Identities=32%  Similarity=0.640  Sum_probs=71.0

Q ss_pred             cCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHccc
Q psy15117         19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANA   93 (114)
Q Consensus        19 l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~   93 (114)
                      .+||.||..||++||.+||+|+++||+|+++++++|+|||++||.||++||++++|. +|||||+||++|++.+.
T Consensus         3 ~~ip~DP~~Wt~~~V~~Wl~w~~~ef~L~~i~~~~F~m~G~~LC~ls~~dF~~r~p~-~GdiL~~hL~~L~~~~~   76 (77)
T d1sv0a_           3 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG-AGDVLHNVLQMLIIESH   76 (77)
T ss_dssp             TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT-THHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhhcCHHHHHHHHHHHHHhcCCCCCCccccCCCHHHHHcCCHHHHHhHCCC-cHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999999999999996 89999999999998653

>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Etv6 transcription factor pointed domain (Tel SAM)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-32  Score=179.64  Aligned_cols=69  Identities=42%  Similarity=0.705  Sum_probs=66.5

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117         21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK   90 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~   90 (114)
                      ||.||..||++||.+||+|+++||+|+++++++|+|||++||.||++||++++| .+|||||+||++||+
T Consensus         8 l~~DP~~Wt~~~V~~WL~w~~~ef~L~~i~~~~F~m~G~~LC~lt~~dF~~r~p-~~GdiL~~hL~~L~~   76 (77)
T d1ji7a_           8 LRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSP-HSGDELYELLQHILK   76 (77)
T ss_dssp             GCSCGGGCCHHHHHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCT-TTHHHHHHHHHHHHH
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHcCCCCCChhccCCCHHHHHcCCHHHHHhHCC-CcHHHHHHHHHHHHh
Confidence            566999999999999999999999999999999999999999999999999999 599999999999997

>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE, CG15085-PA) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Modulator of the activity of Ets (MAE, CG15085-PA)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=9.2e-31  Score=173.73  Aligned_cols=72  Identities=25%  Similarity=0.568  Sum_probs=68.1

Q ss_pred             CCCCCcCCCCHHHHHHHHH--HHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117         20 NIVKDPRQWSESNVAQWLC--WAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        20 ~iP~DP~~WS~~~V~~Wl~--W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~   92 (114)
                      +||.||+.||++||.+||+  |+++||+|+++++++|+|||++||.||++||+.++| .+|||||+||+++...+
T Consensus         6 ~ip~DP~~Wt~~~V~~WL~~~w~~~ef~l~~~~~~~F~m~G~~LC~ls~edF~~r~P-~~GdiL~~~L~~~l~~a   79 (82)
T d1sv0c_           6 GLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP-VGGKMLYRDFRVRLARA   79 (82)
T ss_dssp             SSBSSGGGCCHHHHHHHHHHHHHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT-TTHHHHHHHHHHHHHHH
T ss_pred             CCCcChHhCCHHHHHHHHHHHHHHcCCCCCCCChhhcCCCHHHHHcCCHHHHHhhCC-CchHHHHHHHHHHHHHH
Confidence            6999999999999999998  999999999999999999999999999999999999 58999999999886543

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.66  E-value=3.2e-05  Score=46.96  Aligned_cols=53  Identities=11%  Similarity=0.194  Sum_probs=37.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH
Q psy15117         24 DPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD   79 (114)
Q Consensus        24 DP~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd   79 (114)
                      .+..||.+||.+||.-..   .+...  .+..-.+||..|+.||.+++........|+
T Consensus         4 pv~~Ws~~dV~~wL~~~~---~~~~y~~~F~~~~IdG~~Ll~Lt~~~L~~~~~~~~g~   58 (70)
T d1kw4a_           4 PISSWSVDDVSNFIRELP---GCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGP   58 (70)
T ss_dssp             CGGGCCHHHHHHHHHTST---TCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHH
T ss_pred             chhcCCHHHHHHHHHhCC---CcHHHHHHHHHcCccHHHHHHccHHHHHHHcCCchHH
Confidence            367899999999996210   12211  122347999999999999998876544674

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.00019  Score=45.69  Aligned_cols=67  Identities=22%  Similarity=0.371  Sum_probs=48.3

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhh--hC--CCCChHHHHHHHHHHHHcc
Q psy15117         21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLA--RA--PPFMGDILWEHLEILQKAN   92 (114)
Q Consensus        21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~--~~--p~~~GdiL~~hL~~Lk~~~   92 (114)
                      ...+...||+++|.+||.-    ..++... ..| .+||..|..||.+|+..  +-  ...-...+..-++.||...
T Consensus         7 ~~~~V~~Ws~~dV~~WL~~----~gl~~Y~-~~F~~IdG~~Ll~Lt~~dL~~~~Lgi~~~~~rk~il~~I~~Lk~~~   78 (85)
T d2d8ca1           7 TMKEVVYWSPKKVADWLLE----NAMPEYC-EPLEHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEH   78 (85)
T ss_dssp             CCSCCSSCCTTHHHHHHHH----TTCTTTT-TTTTTCCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHS
T ss_pred             ccCChhhCCHHHHHHHHHH----CcHHHHH-HHHHhccHHHHHHCCHHHHhhcCccCcChhHHHHHHHHHHHHHHHh
Confidence            4568899999999999973    2343321 233 69999999999999976  32  2123467888889888654

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.48  E-value=1.4e-05  Score=47.87  Aligned_cols=53  Identities=15%  Similarity=0.290  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHH
Q psy15117         28 WSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDI   80 (114)
Q Consensus        28 WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gdi   80 (114)
                      ||.+||.+||.-...-++--.-.+..-.|||..|+.||.++.........|.-
T Consensus         1 Ws~~dV~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~edL~~~~~~~~G~r   53 (63)
T d1pk3a1           1 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPA   53 (63)
T ss_dssp             CCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHHCCCHHHH
T ss_pred             CCHHHHHHHHHHccccHHHHHHHHHHhCcCHHHHHhcCHHHHHHhcCCCchHH
Confidence            99999999997541111110111334479999999999999987554346754

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=7.8e-05  Score=46.21  Aligned_cols=65  Identities=22%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             cCCCCHHHHHHHHHHHH-HhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCCh--HHHHHHHHHHHHcc
Q psy15117         25 PRQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG--DILWEHLEILQKAN   92 (114)
Q Consensus        25 P~~WS~~~V~~Wl~W~~-~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~G--diL~~hL~~Lk~~~   92 (114)
                      ...||.++|.+||.-.- .+|.   -.+..-.+||..|+.|+.+|+...--...|  ..+...++.||...
T Consensus         4 v~~Wt~~~V~~WL~~~gl~~y~---~~F~~~~I~G~~Ll~L~~~dL~~lgI~~~ghr~~il~~i~~Lk~~~   71 (78)
T d1wwva1           4 VETWTPGKVATWLRGLDDSLQD---YPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALS   71 (78)
T ss_dssp             TTTCCTTTHHHHHHHHCHHHHT---SCHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHcchHHHH---HHHHHcCCCcHHHHHhhHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            36799999999996431 2332   123344799999999999999886533355  46778888887654

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.00048  Score=40.69  Aligned_cols=50  Identities=22%  Similarity=0.436  Sum_probs=35.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH
Q psy15117         26 RQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD   79 (114)
Q Consensus        26 ~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd   79 (114)
                      ..||.++|.+||.-    .+++..  .+....+||..|..||.+|+...--...|+
T Consensus         2 ~~Ws~~~V~~wL~~----~gl~~y~~~F~~~~i~g~~L~~l~~~dL~~lGi~~~g~   53 (64)
T d2f3na1           2 QLWSKFDVGDWLES----IHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGH   53 (64)
T ss_dssp             GGCCHHHHHHHHHH----TTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHH
T ss_pred             CCCCHHHHHHHHHH----CCCHHHHHHHHHCCCcHHHhhcCCHHHHHHcCCCCHHH
Confidence            47999999999962    234332  233447999999999999987754323453

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.62  E-value=0.27  Score=29.02  Aligned_cols=62  Identities=15%  Similarity=0.240  Sum_probs=40.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCCh-HHhhcCChHHHhhhCCCCChH--HHHHHHHHHHH
Q psy15117         25 PRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRG-KDICSMGKESFLARAPPFMGD--ILWEHLEILQK   90 (114)
Q Consensus        25 P~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G-~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk~   90 (114)
                      |-.|+-..|.+||.-    ..|+..  .+..-.++| ..|+.++.+++...--...|+  .+...++.||.
T Consensus         1 Pd~~~~~~V~~WL~~----lgL~~Y~~~F~~~~idg~~~l~~l~~~~L~~lGI~~~ghr~ril~~i~~Lr~   67 (74)
T d1b4fa_           1 PDYTSFNTVDEWLEA----IKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRA   67 (74)
T ss_dssp             CCCCCCSSHHHHHHH----TTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHH----CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence            566777789999973    233322  223346888 567789999997764323564  57777777764