Psyllid ID: psy15134

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MSEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSFL
ccccEEEEcHHHccccccccccccccccEEEEEEccccEEEEEEccccEEEEEEEcccEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEEEEEEcccccccEEEEHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHcccc
cccccccccHHHHHHcccccEEEEccccccEEEcccccEEEEEEcccEEEEEccccEEEEccccccccccEEEcccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mseeyrildvnwlqniwrpdcffknakkvtfhemsipnhylwlyhdktllyMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISfwikpeaiparVTLGVTSLLTLATqntqsqqslppvsyVKAIDIWMSSCSVFVFLSLMEFAVVnnymgpiatkamkgyseedlrnnvdefknldptrsrsitipqvpmyptfcngREIALYIDKfsrfffpfsFFVLNILYWTSFL
mseeyrildvnwlqniwrpDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATqntqsqqslppVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDefknldptrsrsitipqvpmypTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSFL
MSEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKfsrfffpfsffVLNILYWTSFL
****YRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQN******LPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGY*********************SITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSF*
**EEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQ*QQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNV******************VPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSFL
MSEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ*********PVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSFL
****YRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMK*******************************MYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSFL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
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MSEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
Q61603456 Glycine receptor subunit yes N/A 0.965 0.548 0.332 4e-42
O75311464 Glycine receptor subunit yes N/A 0.957 0.534 0.323 1e-38
Q7TNC8452 Glycine receptor subunit no N/A 0.969 0.555 0.315 2e-38
P22771452 Glycine receptor subunit no N/A 0.969 0.555 0.315 2e-38
P23416452 Glycine receptor subunit no N/A 0.961 0.550 0.32 2e-38
P24524464 Glycine receptor subunit no N/A 0.949 0.530 0.321 3e-38
Q91XP5464 Glycine receptor subunit no N/A 0.957 0.534 0.320 3e-38
P57695457 Glycine receptor subunit no N/A 0.922 0.522 0.323 2e-37
P23415457 Glycine receptor subunit no N/A 0.922 0.522 0.323 2e-37
O93430444 Glycine receptor subunit no N/A 0.930 0.542 0.313 3e-37
>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3 Back     alignment and function desciption
 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 158/328 (48%), Gaps = 78/328 (23%)

Query: 8   LDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLY---------------- 51
           LD + L +IW+PD FF N K   FHE++  N  L ++ +  +LY                
Sbjct: 118 LDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKN 177

Query: 52  ----MSNCTAFIQIF-----------------VKIKYSICMNAVLL-------------- 76
               +  CT  ++ F                 V++   + +   +L              
Sbjct: 178 FPMDIQTCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCTKHYN 237

Query: 77  -GNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTL 135
            G FTCI V F+L R++GY+L   YIPS LIV++SW+SFWI  +A PARV LG+T++LT+
Sbjct: 238 TGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTM 297

Query: 136 ATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVN-------NYMGPIATKAM 188
            TQ++ S+ SLP VSYVKAIDIWM+ C +FVF +L+E+A VN        +M     +  
Sbjct: 298 TTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFMRLRRRQRR 357

Query: 189 KGYSEEDLR-----------NNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREI------ 231
           +   E+ +R            +  + ++  P    SI  PQ P  P    G  +      
Sbjct: 358 QRMEEDIIRESRFYFRGYGLGHCLQARDGGPMEGSSIYSPQPPT-PLLKEGETMRKLYVD 416

Query: 232 -ALYIDKFSRFFFPFSFFVLNILYWTSF 258
            A  ID  SR  FPF+F V NI YW  +
Sbjct: 417 RAKRIDTISRAVFPFTFLVFNIFYWVVY 444
The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing). May play a role in the maturation of reproductive organs.
Mus musculus (taxid: 10090)
>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2 Back     alignment and function description
>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1 Back     alignment and function description
>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1 SV=1 Back     alignment and function description
>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1 Back     alignment and function description
>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2 SV=1 Back     alignment and function description
>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2 Back     alignment and function description
>sp|P57695|GLRA1_BOVIN Glycine receptor subunit alpha-1 OS=Bos taurus GN=GLRA1 PE=2 SV=1 Back     alignment and function description
>sp|P23415|GLRA1_HUMAN Glycine receptor subunit alpha-1 OS=Homo sapiens GN=GLRA1 PE=1 SV=2 Back     alignment and function description
>sp|O93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 OS=Danio rerio GN=glra1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
383865049 753 PREDICTED: glycine receptor subunit alph 1.0 0.343 0.653 1e-110
340709187 462 PREDICTED: glycine receptor subunit alph 1.0 0.560 0.650 1e-109
380027122 439 PREDICTED: glycine receptor subunit alph 1.0 0.589 0.657 1e-109
345486382 462 PREDICTED: LOW QUALITY PROTEIN: glycine 1.0 0.560 0.653 1e-109
269856279 383 histamine-gated chloride channel 2 [Naso 1.0 0.676 0.647 1e-109
110555520 383 histamine-gated chloride channel, partia 1.0 0.676 0.653 1e-109
328720498 401 PREDICTED: glycine receptor subunit alph 0.996 0.643 0.670 1e-105
307183671 388 Glycine receptor subunit alpha-2 [Campon 1.0 0.667 0.653 1e-102
194744425 426 GF18400 [Drosophila ananassae] gi|190627 0.984 0.598 0.656 5e-99
195112018 425 GI22447 [Drosophila mojavensis] gi|19391 0.972 0.592 0.656 1e-98
>gi|383865049|ref|XP_003707988.1| PREDICTED: glycine receptor subunit alpha-4-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/312 (65%), Positives = 221/312 (70%), Gaps = 53/312 (16%)

Query: 1   MSEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQ 60
           MSEEYRILDV+WL NIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMS  T  + 
Sbjct: 442 MSEEYRILDVDWLHNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLS 501

Query: 61  IFVKIKY--------------------------------------------------SIC 70
             +K +                                                   + C
Sbjct: 502 CAMKFESYPHDTQICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDISNNYTTDC 561

Query: 71  MNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVT 130
                 GNFTCI +VFNLRRRLGYHLFHTYIPSALIVVMSWI+FWIKPEAIPARVTLGVT
Sbjct: 562 TIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSALIVVMSWIAFWIKPEAIPARVTLGVT 621

Query: 131 SLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKG 190
           SLLTLATQNTQSQQSLPPVSYVKAID+WMSSCSVFVFLSLMEFAVVNNYMGP+ATKAMKG
Sbjct: 622 SLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYMGPVATKAMKG 681

Query: 191 YSEEDLRNNVDEFKNL---DPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSF 247
           YS+EDLR  +DEFK     D  RSRS   P    Y T C GR  A+YIDK SRFFFPFSF
Sbjct: 682 YSDEDLREAIDEFKTPMRNDSERSRSPVRPATVQYDTCCQGRATAIYIDKVSRFFFPFSF 741

Query: 248 FVLNILYWTSFL 259
            +LN++YW++FL
Sbjct: 742 LILNVVYWSTFL 753

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340709187|ref|XP_003393193.1| PREDICTED: glycine receptor subunit alpha-4-like [Bombus terrestris] gi|350425231|ref|XP_003494054.1| PREDICTED: glycine receptor subunit alpha-4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380027122|ref|XP_003697281.1| PREDICTED: glycine receptor subunit alpha-4-like [Apis florea] Back     alignment and taxonomy information
>gi|345486382|ref|XP_003425464.1| PREDICTED: LOW QUALITY PROTEIN: glycine receptor subunit alpha-4 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|269856279|gb|ACZ51422.1| histamine-gated chloride channel 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|110555520|gb|ABG75740.1| histamine-gated chloride channel, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|328720498|ref|XP_001946739.2| PREDICTED: glycine receptor subunit alpha-4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307183671|gb|EFN70374.1| Glycine receptor subunit alpha-2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|194744425|ref|XP_001954695.1| GF18400 [Drosophila ananassae] gi|190627732|gb|EDV43256.1| GF18400 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195112018|ref|XP_002000573.1| GI22447 [Drosophila mojavensis] gi|193917167|gb|EDW16034.1| GI22447 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
FB|FBgn0037950426 HisCl1 "Histamine-gated chlori 0.756 0.460 0.691 2.6e-96
FB|FBgn0003011485 ort "ora transientless" [Droso 0.416 0.222 0.657 2.6e-63
MGI|MGI:95750456 Glra4 "glycine receptor, alpha 0.416 0.236 0.574 1.5e-43
UNIPROTKB|F1RYC5457 LOC100525376 "Uncharacterized 0.416 0.236 0.574 3e-43
UNIPROTKB|E1BHI1457 GLRA4 "Uncharacterized protein 0.416 0.236 0.574 6.2e-43
UNIPROTKB|F1PC16457 GLRA1 "Uncharacterized protein 0.416 0.236 0.574 7.9e-43
MGI|MGI:95747457 Glra1 "glycine receptor, alpha 0.416 0.236 0.574 7.9e-43
RGD|2704457 Glra1 "glycine receptor, alpha 0.416 0.236 0.574 1e-42
UNIPROTKB|P57695457 GLRA1 "Glycine receptor subuni 0.416 0.236 0.574 2.6e-42
UNIPROTKB|P23415457 GLRA1 "Glycine receptor subuni 0.416 0.236 0.574 2.6e-42
FB|FBgn0037950 HisCl1 "Histamine-gated chloride channel subunit 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 703 (252.5 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 139/201 (69%), Positives = 160/201 (79%)

Query:    60 QIFVKIKYSI-CMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKP 118
             Q+ +   Y+  C      GNFTC+A+VFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKP
Sbjct:   230 QLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKP 289

Query:   119 EAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNN 178
             EAIPARVT+GVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNN
Sbjct:   290 EAIPARVTVGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNN 349

Query:   179 YMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKX 238
             +MGP+ATKAMKGYS+E++ +++D+ K+       SI  PQ   Y TFC+G   A+YIDK 
Sbjct:   350 FMGPVATKAMKGYSDENI-SDLDDLKSALQHHRESIIEPQ---YDTFCHGHATAIYIDKF 405

Query:   239 XXXXXXXXXXVLNILYWTSFL 259
                       +LNI+YWT+FL
Sbjct:   406 SRFFFPFSFFILNIVYWTTFL 426
GO:0016933 "extracellular-glycine-gated ion channel activity" evidence=ISS
GO:0019182 "histamine-gated chloride channel activity" evidence=NAS
GO:0019183 "histamine-gated chloride channel complex" evidence=NAS
GO:0006811 "ion transport" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0043052 "thermotaxis" evidence=IMP
FB|FBgn0003011 ort "ora transientless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:95750 Glra4 "glycine receptor, alpha 4 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYC5 LOC100525376 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BHI1 GLRA4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PC16 GLRA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:95747 Glra1 "glycine receptor, alpha 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2704 Glra1 "glycine receptor, alpha 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P57695 GLRA1 "Glycine receptor subunit alpha-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P23415 GLRA1 "Glycine receptor subunit alpha-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
TIGR00860459 TIGR00860, LIC, Cation transporter family protein 6e-43
pfam02932228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 3e-28
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information 
 Score =  151 bits (383), Expect = 6e-43
 Identities = 98/354 (27%), Positives = 143/354 (40%), Gaps = 112/354 (31%)

Query: 14  QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLY-----------MS--------- 53
            +IW PD FF N K   FH +++ N  + ++ + ++LY           M          
Sbjct: 109 DSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQ 168

Query: 54  NCTAFI----------------QIFVKIKYSICMNAVLLGNFT----------------- 80
           NC+                   Q  V++  S+ ++   L  F                  
Sbjct: 169 NCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFIS---LPEFELLGVYGTRYCTSETNTG 225

Query: 81  ---CIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLAT 137
              C+   F LRRR  Y+L   YIPS LIV++SW+SFW+  +A  ARV+LG+T+LLT+ T
Sbjct: 226 EYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTT 285

Query: 138 QNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNY-------------MGPIA 184
            ++  ++SLP VSYVKAID++ + C  FVFL+L+E A VN               +   A
Sbjct: 286 FSSGVRESLPAVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPAQGKRHLLLERCA 345

Query: 185 TKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPT-------------------- 224
            +  K    ED R    +  +L     R+    +    PT                    
Sbjct: 346 WRLCKQEPGEDYRRPALDHASLSSVEMRAKDGGRGLESPTERQRLLHSPPPAEGDLDLAG 405

Query: 225 ----------FCNGREI----------ALYIDKFSRFFFPFSFFVLNILYWTSF 258
                     F    E           A  IDK SR  FP +F + NI YW S+
Sbjct: 406 ILEEVRIAHRFRKRDESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNIGYWMSY 459

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
KOG3643|consensus459 100.0
KOG3644|consensus457 100.0
KOG3642|consensus466 100.0
TIGR00860459 LIC Cation transporter family protein. selective w 100.0
KOG3645|consensus449 99.96
KOG3646|consensus486 99.95
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.94
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.2
>KOG3643|consensus Back     alignment and domain information 
Probab=100.00  E-value=5e-68  Score=482.25  Aligned_cols=181  Identities=43%  Similarity=0.773  Sum_probs=174.1

Q ss_pred             CCceeeeCccccCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeee---
Q psy15134          2 SEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNA---   73 (259)
Q Consensus         2 ~~~~~~l~~~~~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~---   73 (259)
                      ..+-++||.+++++||+||+||.|+|++.+|++|.+|+++|+++||+|+|+.|++.+++|+|||     |.|.|+++   
T Consensus       101 ~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiES  180 (459)
T KOG3643|consen  101 NIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIES  180 (459)
T ss_pred             CCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEe
Confidence            3567899999999999999999999999999999999999999999999999999999999999     89999763   


Q ss_pred             -------------------------------------------ecCCceeeeeEEEeeecccceeEEeeehhhHHHhhhe
Q psy15134         74 -------------------------------------------VLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMS  110 (259)
Q Consensus        74 -------------------------------------------~~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls  110 (259)
                                                                 +.+|+|++|.+.|.++|+.|||++|+|+|++|+|++|
T Consensus       181 YGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilS  260 (459)
T KOG3643|consen  181 YGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILS  260 (459)
T ss_pred             cccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHh
Confidence                                                       3689999999999999999999999999999999999


Q ss_pred             eeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccCh
Q psy15134        111 WISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGP  182 (259)
Q Consensus       111 ~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~  182 (259)
                      |+||||+.++.|||+++|+|++|||++++++.+++||++||+||||+|+++|++|||+||+|||+|+|...+
T Consensus       261 WVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~  332 (459)
T KOG3643|consen  261 WVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKR  332 (459)
T ss_pred             HhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998753

>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>KOG3646|consensus Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3rhw_A347 C. Elegans Glutamate-Gated Chloride Channel (Glucl) 1e-30
1vry_A76 Second And Third Transmembrane Domains Of The Alpha 9e-15
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 62/251 (24%)
Query: 4   EYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLY------MSNCTA 57
           ++ IL V     IW PD FF N K+   H +  PN  + +++D T+LY      + +C  
Sbjct: 75  DFVILTVG--HQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPM 132
Query: 58  FIQIF------------------------------VKIKYSI----------------CM 71
           ++Q +                              +++K  +                C 
Sbjct: 133 YLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCT 192
Query: 72  NAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTS 131
           +    G ++C+     L+R   ++L   YIPS ++V++SW+SFW    AIPARVTLGVT+
Sbjct: 193 SVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTT 252
Query: 132 LLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGY 191
           LLT+  Q+      LPPVSY+KAID+W+ +C  F+F +L+EFA+VN+        A  G 
Sbjct: 253 LLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHI-------ANAGT 305
Query: 192 SE-EDLRNNVD 201
           +E  D+   VD
Sbjct: 306 TEWNDISKRVD 316
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 7e-57
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 4e-53
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 4e-48
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 7e-06
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 3e-21
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 4e-08
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 1e-07
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 6e-07
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 7e-07
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 8e-07
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 3e-06
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 3e-06
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 3e-06
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 6e-06
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 2e-05
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 2e-05
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 4e-05
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 1e-04
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 2e-04
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 6e-04
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 7e-04
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
 Score =  184 bits (468), Expect = 7e-57
 Identities = 83/309 (26%), Positives = 126/309 (40%), Gaps = 93/309 (30%)

Query: 3   EEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM------SNCT 56
            +   + +     IW PD FF N K+   H +  PN  + +++D T+LY        +C 
Sbjct: 72  GQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCP 131

Query: 57  AFIQIF----------------------------------------------VKIKYSIC 70
            ++Q +                                                   + C
Sbjct: 132 MYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYC 191

Query: 71  MNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVT 130
            +    G ++C+     L+R   ++L   YIPS ++V++SW+SFW    AIPARVTLGVT
Sbjct: 192 TSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVT 251

Query: 131 SLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKG 190
           +LLT+  Q+      LPPVSY+KAID+W+ +C  F+F +L+EFA+VN+            
Sbjct: 252 TLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHI----------- 300

Query: 191 YSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVL 250
                                                  +I+  +D  SR  FP  FFV 
Sbjct: 301 ------------------------------ANAGTTEWNDISKRVDLISRALFPVLFFVF 330

Query: 251 NILYWTSFL 259
           NILYW+ F 
Sbjct: 331 NILYWSRFG 339
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 28 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 100.0
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 100.0
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 100.0
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.95
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.95
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.94
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 99.81
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 99.8
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 99.79
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 99.79
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 99.76
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.7
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 99.6
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 99.59
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 99.5
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 99.47
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.45
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 99.38
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 99.35
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 99.3
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 97.35
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-50  Score=369.06  Aligned_cols=204  Identities=40%  Similarity=0.801  Sum_probs=187.6

Q ss_pred             CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134         14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV--------------   74 (259)
Q Consensus        14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~--------------   74 (259)
                      ++||+||++++|++++.+|..+.+|..++|++||+|.|..|++.+++|+||+     |.|+|++++              
T Consensus        83 ~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~  162 (347)
T 3rhw_A           83 HQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLW  162 (347)
T ss_dssp             CCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEE
T ss_pred             hceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEe
Confidence            9999999999999999999988899999999999999999999999999998     899997643              


Q ss_pred             ---------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCc
Q psy15134         75 ---------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAI  121 (259)
Q Consensus        75 ---------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~  121 (259)
                                                       .+|.|+++.+.+++||+++||++++++||++++++||++||+|+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~  242 (347)
T 3rhw_A          163 KEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAI  242 (347)
T ss_dssp             CSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCH
T ss_pred             cCCCceeecCcceeEccceEEeeEEeeEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCC
Confidence                                             23678999999999999999999999999999999999999999998


Q ss_pred             cchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhccccc
Q psy15134        122 PARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVD  201 (259)
Q Consensus       122 ~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~~~  201 (259)
                      |+|+++|+|++|++++++..+++.||++||+|+||+|+++|++|+|+|++|+++|++++++.+++               
T Consensus       243 ~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~~~~---------------  307 (347)
T 3rhw_A          243 PARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTE---------------  307 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---------------
T ss_pred             cceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch---------------
Confidence            99999999999999999999999999999999999999999999999999999999986432211               


Q ss_pred             cccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHHhhhc
Q psy15134        202 EFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSF  258 (259)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~YW~~y  258 (259)
                                                .+..|+++|+++|++||++|++||+.||.-|
T Consensus       308 --------------------------~~~~~~~~~~~~~~~~p~~~~i~n~~~~~~~  338 (347)
T 3rhw_A          308 --------------------------WNDISKRVDLISRALFPVLFFVFNILYWSRF  338 (347)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                                      0124789999999999999999999999764
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1oede_260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 4e-19
d1oedb_250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 1e-17
d1oedc_260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 8e-17
d1oeda_227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 3e-16
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 81.8 bits (201), Expect = 4e-19
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 94  YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
           +++ +   P  LI  +  + +++  +A   + TL ++ LL          Q +P  S  V
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
             I  ++        L +M   +V N 
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCVIVLNV 89
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1oede_260 Acetylcholine receptor protein, gamma chain {Marbl 99.93
d1oeda_227 Acetylcholine receptor protein, alpha chain {Marbl 99.92
d1oedc_260 Acetylcholine receptor protein, delta chain {Marbl 99.87
d1oedb_250 Acetylcholine receptor protein, beta chain {Marble 99.78
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 99.28
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.93  E-value=9.8e-29  Score=214.50  Aligned_cols=91  Identities=19%  Similarity=0.212  Sum_probs=87.9

Q ss_pred             cceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHHHHHHH
Q psy15134         92 LGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSL  170 (259)
Q Consensus        92 ~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~vf~sl  170 (259)
                      |.||++++++||++++++||++||+|+++.|||++||+|++|+|++++..++++||++| ++|+||+|+.+|++++++++
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl   80 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999899999999999999999999999999998 69999999999999999999


Q ss_pred             HHHhhhhhccCh
Q psy15134        171 MEFAVVNNYMGP  182 (259)
Q Consensus       171 le~~~V~~~~~~  182 (259)
                      +++++|++++++
T Consensus        81 ~~t~iVl~~~~~   92 (260)
T d1oede_          81 MNCVIVLNVSLR   92 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHheeeEEcc
Confidence            999999999754
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure