Psyllid ID: psy15137

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770----
MTSDIRDILELERDAPAEITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNKKHLQVEDLLCTIPMMDIL
cccHHHHHHcccccccccccHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHcccccccEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccccccHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccc
ccccHHHHHHccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHcHcccccccccccccccccccccccccEEEccEEccccccccccccEEEcHHHHHHccccccccEEccEEEcccccHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEEccccHHHccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHccccccccccccccccccccccccEEccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHccccEEccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccEHEcccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHcccccEEEEEEEEcccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHcc
MTSDIRDILELerdapaeitREAIIGvdktrkmqpnkykkekrpegMAREVFALLCndnrdappllptdsgqgykhtkaklgmrkvrpwkwlpfsnparkdnavfhhwrrvtdegkeypfarfnkqvsiptytdteylqelqsptwtraetDHLFDLCHRFDLRFIVIhdrydtnkfptsrtieDLKQRYYFVCHTLAkmrgtecsggnepklfdAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADmqadnrktdkkmppkrklthqirprsldtsvKTTAFQTLIdlglnpipteeIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQyeavhpgetfqipekifeptsllsnlgdteylqelqsptwtraetDHLFDLCHRFDLRFIVIhdrydtnkfptsrtiedLKQRYYFVCYTLAkmrgtecsggnepklfdAEHEKKRKEQLKRLFertpeqcgtgaglgfNINIawsgalnppmgdaeylssdgrektqyfpfrcwdvhhgngtqqifysdKRVLYLSIhrhddgnffpgtggpiecgtgaglgfNINIawsgalnppmgdaEYLAAFRTIVMpvakefdpQIVLVSAgfdaaaghppplggyklspacfgYMTQQLMTLADGKVVLALeggydlpsmcdSAEACVRALlgdappplsqeeltrspclKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNkkhlqvedllctipmmdil
mtsdirdilelerdapaeitreaiigvdktrkmqpnkykkekrpegmAREVFALLCNDNRDAppllptdsgqgykhtkaklgmrkvrpwkwlpfsnparkdnavfHHWRRVTdegkeypfarfnKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIhdrydtnkfptsrtiedlkQRYYFVCHTLAKmrgtecsggnepklfdaehEKKRKEQLKRlfertpeqveeEQMLLAELKkieirrkerdrktqdlqklmtaadmqadnrktdkkmppkrklthqirprsldtsvKTTAFQTlidlglnpipTEEIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIhdrydtnkfptsrtiedlkqRYYFVCYTLAKmrgtecsggnepklfdaeHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMnkkhlqvedllctipmmdil
MTSDIRDILELERDAPAEITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELkkieirrkerdrkTQDLQKLMTAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNKKHLQVEDLLCTIPMMDIL
**************************************************VFALLCN*********************AKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRG****************************************************************************************************VKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGT********************************QCGTGAGLGFNINIAWSGALNPPMGDAEYL*****EKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG**************PCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSA******************HLQVEDLLCTIP*****
*TSDIRDI****************************************REVFALLCNDNRDAPPLLP*********************WKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAK*************LFDAEHEKKRKEQLKR***************************************************************************************************YNELRSDMVLLYELKQALD*******************ETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTN*********DLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPP*********SPCLKAVETLQKTIAIQVSHWPVLKRSA************************************CTIPMMDIL
MTSDIRDILELERDAPAEITREAIIGVDKTRKM***********EGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADM*********************RPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNKKHLQVEDLLCTIPMMDIL
***DIRDILELERDAPAEITREAIIGV************KEKRPEGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQ****************************VKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNKKHLQVEDLLCTIPMMDIL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSDIRDILELERDAPAEITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVLxxxxxxxxxxxxxxxxxxxxxYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNKKHLQVEDLLCTIPMMDIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query774 2.2.26 [Sep-21-2011]
Q9NPF5467 DNA methyltransferase 1-a yes N/A 0.462 0.766 0.527 1e-107
Q9JI44468 DNA methyltransferase 1-a yes N/A 0.462 0.764 0.527 1e-107
P830381080 Histone deacetylase 4 OS= no N/A 0.290 0.208 0.598 2e-80
Q99P991077 Histone deacetylase 4 OS= no N/A 0.290 0.208 0.593 4e-80
P565241084 Histone deacetylase 4 OS= no N/A 0.290 0.207 0.598 5e-80
Q6NZM91076 Histone deacetylase 4 OS= no N/A 0.290 0.209 0.593 1e-79
Q8WUI4952 Histone deacetylase 7 OS= no N/A 0.298 0.242 0.573 1e-76
Q8C2B3938 Histone deacetylase 7 OS= no N/A 0.288 0.237 0.592 1e-76
Q80ZH11111 Histone deacetylase 5 OS= no N/A 0.295 0.206 0.562 3e-76
Q9UKV01011 Histone deacetylase 9 OS= no N/A 0.240 0.183 0.677 3e-75
>sp|Q9NPF5|DMAP1_HUMAN DNA methyltransferase 1-associated protein 1 OS=Homo sapiens GN=DMAP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/396 (52%), Positives = 278/396 (70%), Gaps = 38/396 (9%)

Query: 3   SDIRDILEL---ERDAPA-EITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCND 58
           +D+RDILEL   E DA +  I+++ II  DK +  + ++    KRPEGM REV+ALL +D
Sbjct: 5   ADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYALLYSD 64

Query: 59  NRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEY 118
            +DAPPLLP+D+GQGY+  KAKLG +KVRPWKW+PF+NPARKD A+F HWRR  +EGK+Y
Sbjct: 65  KKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEEGKDY 124

Query: 119 PFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFP 178
           PFARFNK V +P Y++ EY   L    WT+AETDHLFDL  RFDLRF+VIHDRYD  +F 
Sbjct: 125 PFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQF- 183

Query: 179 TSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVE 238
             R++EDLK+RYY +C  LA +R    +    P +FDA HE++RKEQL+RL+ RTPEQV 
Sbjct: 184 KKRSVEDLKERYYHICAKLANVRAVPGTDLKIP-VFDAGHERRRKEQLERLYNRTPEQVA 242

Query: 239 EEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRKTDKKMP----PKRK----- 289
           EE+ LL EL+KIE R+KER++++QDLQKL+TAAD  A+ R+T++K P    P++K     
Sbjct: 243 EEEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLPQKKEAEKP 302

Query: 290 -----------------LTHQIRPRSLDTSV---KTTAF-QTLIDLG--LNPIPTEEIVT 326
                            +T + +   L +SV   K  A  Q L++LG  L+P PTEE+V 
Sbjct: 303 AVPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQMLLELGVELSPTPTEELVH 362

Query: 327 HYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAV 362
            +NELRSD+VLLYELKQA  N ++ELQ L+H++EA+
Sbjct: 363 MFNELRSDLVLLYELKQACANCEYELQMLRHRHEAL 398
Involved in transcription repression and activation. Its interaction with HDAC2 may provide a mechanism for histone deacetylation in heterochromatin following replication of DNA at late firing origins. Can also repress transcription independently of histone deacetylase activity. May specifically potentiate DAXX-mediated repression of glucocorticoid receptor-dependent transcription. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Participates in the nuclear localization of URI1 and increases its transcriptional corepressor activity.
Homo sapiens (taxid: 9606)
>sp|Q9JI44|DMAP1_MOUSE DNA methyltransferase 1-associated protein 1 OS=Mus musculus GN=Dmap1 PE=1 SV=1 Back     alignment and function description
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1 Back     alignment and function description
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2 Back     alignment and function description
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3 Back     alignment and function description
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1 Back     alignment and function description
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2 Back     alignment and function description
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2 Back     alignment and function description
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query774
307206459429 DNA methyltransferase 1-associated prote 0.478 0.862 0.567 1e-124
380022203440 PREDICTED: DNA methyltransferase 1-assoc 0.478 0.840 0.563 1e-124
66500763440 PREDICTED: DNA methyltransferase 1-assoc 0.478 0.840 0.563 1e-124
350419374440 PREDICTED: DNA methyltransferase 1-assoc 0.468 0.825 0.567 1e-124
383865072455 PREDICTED: DNA methyltransferase 1-assoc 0.478 0.813 0.558 1e-123
340709037440 PREDICTED: LOW QUALITY PROTEIN: DNA meth 0.468 0.825 0.562 1e-122
345486711430 PREDICTED: DNA methyltransferase 1-assoc 0.476 0.858 0.569 1e-118
332020070431 DNA methyltransferase 1-associated prote 0.479 0.860 0.566 1e-118
307188056429 DNA methyltransferase 1-associated prote 0.478 0.862 0.546 1e-117
427789431482 Putative dna methyltransferase 1-associa 0.462 0.742 0.544 1e-115
>gi|307206459|gb|EFN84493.1| DNA methyltransferase 1-associated protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/412 (56%), Positives = 290/412 (70%), Gaps = 42/412 (10%)

Query: 3   SDIRDILELERDAPAEITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCNDNRDA 62
           +D+RDIL++E     E+T+E+I+G DK  + + +  K  KRPEGM REVFALLC DN D 
Sbjct: 2   ADVRDILDIEVPTTTELTKESILGSDKKNRKKYDYNKVPKRPEGMHREVFALLCKDNNDV 61

Query: 63  PPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFAR 122
           PP+ PTD+G+GYK  +AKLGM+KVRPWKW PF+NPAR D A+FHHWRRV D GKEYPFA+
Sbjct: 62  PPMFPTDTGKGYKQARAKLGMKKVRPWKWTPFTNPARTDGAIFHHWRRVADAGKEYPFAK 121

Query: 123 FNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRT 182
           FNK+V IPTYT+ EY+Q L +  WTRAETDHLFDLC RFDLRFI+I DR+D NKFP +R+
Sbjct: 122 FNKKVPIPTYTNAEYVQHLVTNGWTRAETDHLFDLCKRFDLRFIIIKDRWDRNKFP-ARS 180

Query: 183 IEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQM 242
           +EDLK+RYY VC  L K +    S  ++  +FDAEHEK+RKEQLK+LFERTPEQVEEEQ 
Sbjct: 181 VEDLKERYYQVCAALTKAK----SHTDKVYMFDAEHEKRRKEQLKKLFERTPEQVEEEQT 236

Query: 243 LLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTS 302
           LLAEL+KIE R+KERDRKTQDLQKL+TAAD QAD RK+++K   K+    + RP   DTS
Sbjct: 237 LLAELRKIEQRKKERDRKTQDLQKLITAADHQADPRKSERKSS-KKNSNSRNRPNKTDTS 295

Query: 303 --VKTTAFQ---------TL-------------------------IDLGLNPIPTEEIVT 326
             V++T  +         TL                         + L LNP PTE+I  
Sbjct: 296 HAVESTGIKFPDFKNSGVTLRSQRIKLPSSLGQKKMKGIEQMLNELRLELNPPPTEQICQ 355

Query: 327 HYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPT 378
            +NELRSD+VL YEL+ AL    +ELQSL+HQYEA+ PG+T  IP  +   T
Sbjct: 356 QFNELRSDIVLHYELRSALSTCDYELQSLRHQYEALAPGKTLTIPPALLPKT 407

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380022203|ref|XP_003694942.1| PREDICTED: DNA methyltransferase 1-associated protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|66500763|ref|XP_392117.2| PREDICTED: DNA methyltransferase 1-associated protein 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350419374|ref|XP_003492159.1| PREDICTED: DNA methyltransferase 1-associated protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383865072|ref|XP_003707999.1| PREDICTED: DNA methyltransferase 1-associated protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340709037|ref|XP_003393122.1| PREDICTED: LOW QUALITY PROTEIN: DNA methyltransferase 1-associated protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345486711|ref|XP_003425537.1| PREDICTED: DNA methyltransferase 1-associated protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332020070|gb|EGI60516.1| DNA methyltransferase 1-associated protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307188056|gb|EFN72888.1| DNA methyltransferase 1-associated protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|427789431|gb|JAA60167.1| Putative dna methyltransferase 1-associated protein-1 [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query774
UNIPROTKB|Q1LZ99468 DMAP1 "DNA methyltransferase 1 0.368 0.608 0.558 2.3e-99
UNIPROTKB|E2R9T9468 DMAP1 "Uncharacterized protein 0.368 0.608 0.558 2.3e-99
UNIPROTKB|Q9NPF5467 DMAP1 "DNA methyltransferase 1 0.368 0.610 0.558 2.3e-99
MGI|MGI:1913483468 Dmap1 "DNA methyltransferase 1 0.368 0.608 0.558 2.3e-99
RGD|1311295468 Dmap1 "DNA methyltransferase 1 0.368 0.608 0.554 4.7e-99
ZFIN|ZDB-GENE-040426-748464 dmap1 "DNA methyltransferase 1 0.363 0.605 0.565 6e-99
UNIPROTKB|F1LX38453 F1LX38 "Uncharacterized protei 0.363 0.620 0.548 9.9e-95
FB|FBgn0034537433 DMAP1 "DMAP1" [Drosophila mela 0.381 0.681 0.506 1e-92
FB|FBgn00412101255 HDAC4 "HDAC4" [Drosophila mela 0.291 0.180 0.678 4e-90
UNIPROTKB|Q5TG40302 DMAP1 "DNA methyltransferase 1 0.368 0.943 0.558 1.5e-83
UNIPROTKB|Q1LZ99 DMAP1 "DNA methyltransferase 1 associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 837 (299.7 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 163/292 (55%), Positives = 210/292 (71%)

Query:     3 SDIRDILEL---ERDAPA-EITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCND 58
             +D+RDILEL   E DA +  I+++ II  DK +  + ++    KRPEGM REV+ALL +D
Sbjct:     5 ADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYALLYSD 64

Query:    59 NRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEY 118
              +DAPPLLP+D+GQGY+  KAKLG +KVRPWKW+PF+NPARKD A+F HWRR  +EGK+Y
Sbjct:    65 KKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEEGKDY 124

Query:   119 PFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFP 178
             PFARFNK V +P Y++ EY   L    WT+AETDHLFDL  RFDLRF+VIHDRYD  +F 
Sbjct:   125 PFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFK 184

Query:   179 TSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVE 238
               R++EDLK+RYY +C  LA +R    +    P +FDA HE++RKEQL+RL+ RTPEQV 
Sbjct:   185 -KRSVEDLKERYYHICAKLANVRAVPGTDLKIP-VFDAGHERRRKEQLERLYNRTPEQVA 242

Query:   239 EEQMLLAELXXXXXXXXXXXXXTQDLQKLMTAADMQADNRKTDKKMPPKRKL 290
             EE+ LL EL             +QDLQKL+TAAD  A+ R+T++K P K+KL
Sbjct:   243 EEEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAP-KKKL 293
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA
GO:0043968 "histone H2A acetylation" evidence=IEA
GO:0043967 "histone H4 acetylation" evidence=IEA
GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA
GO:0006338 "chromatin remodeling" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0003682 "chromatin binding" evidence=IEA
UNIPROTKB|E2R9T9 DMAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NPF5 DMAP1 "DNA methyltransferase 1-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913483 Dmap1 "DNA methyltransferase 1-associated protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311295 Dmap1 "DNA methyltransferase 1-associated protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-748 dmap1 "DNA methyltransferase 1 associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LX38 F1LX38 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0034537 DMAP1 "DMAP1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0041210 HDAC4 "HDAC4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TG40 DMAP1 "DNA methyltransferase 1-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JI44DMAP1_MOUSENo assigned EC number0.52770.46250.7649yesN/A
Q9NPF5DMAP1_HUMANNo assigned EC number0.52770.46250.7665yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.737
3rd Layer3.5.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 1e-135
cd10007420 cd10007, HDAC5, Histone deacetylase 5 1e-105
cd10006409 cd10006, HDAC4, Histone deacetylase 4 8e-99
cd10008378 cd10008, HDAC7, Histone deacetylase 7 2e-96
cd10009379 cd10009, HDAC9, Histone deacetylase 9 6e-93
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2e-83
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-75
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 2e-75
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 6e-64
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 2e-63
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 5e-56
cd11683337 cd11683, HDAC10, Histone deacetylase 10 2e-52
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 2e-46
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 3e-46
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 4e-41
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-40
pfam05499175 pfam05499, DMAP1, DNA methyltransferase 1-associat 2e-39
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 4e-39
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 3e-30
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 3e-22
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-19
cd1165846 cd11658, SANT_DMAP1_like, SANT/myb-like domain of 2e-16
cd1165846 cd11658, SANT_DMAP1_like, SANT/myb-like domain of 2e-16
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 3e-16
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 6e-16
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-14
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 2e-13
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 2e-13
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 3e-13
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-12
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 3e-12
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 4e-12
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-11
cd10009379 cd10009, HDAC9, Histone deacetylase 9 3e-09
cd10007420 cd10007, HDAC5, Histone deacetylase 5 4e-09
cd10006409 cd10006, HDAC4, Histone deacetylase 4 5e-09
cd10008378 cd10008, HDAC7, Histone deacetylase 7 5e-08
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 2e-07
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-05
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-04
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 2e-04
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 0.002
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information 
 Score =  405 bits (1044), Expect = e-135
 Identities = 145/190 (76%), Positives = 164/190 (86%)

Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
           WDVHHGNGTQQIFY D  VLY+S+HR+DDGNFFPGTG P E G+GAG GFN+NIAWSG L
Sbjct: 188 WDVHHGNGTQQIFYEDPNVLYISLHRYDDGNFFPGTGAPTEVGSGAGEGFNVNIAWSGGL 247

Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
           +PPMGDAEYLAAFRT+VMP+A+EF P IVLVSAGFDAA GHPPPLGGYK+SPACFGYMT+
Sbjct: 248 DPPMGDAEYLAAFRTVVMPIAREFSPDIVLVSAGFDAAEGHPPPLGGYKVSPACFGYMTR 307

Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
           QLM LA GKVVLALEGGYDL ++CD++EACVRALLGD   PLS+EEL R P   AV +L+
Sbjct: 308 QLMNLAGGKVVLALEGGYDLTAICDASEACVRALLGDELDPLSEEELERRPNPNAVTSLE 367

Query: 713 KTIAIQVSHW 722
           K IAIQ  +W
Sbjct: 368 KVIAIQSPYW 377

Class IIa histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) to yield deacetylated histones. This subclass includes animal HDAC4, HDAC5, HDAC7, and HDCA9. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Class IIa histone deacetylases are signal-dependent co-repressors, they have N-terminal regulatory domain with two or three conserved serine residues, phosphorylation of these residues is important for ability to shuttle between the nucleus and cytoplasm and act as transcriptional co-repressors. HDAC9 is involved in regulation of gene expression and dendritic growth in developing cortical neurons. It also plays a role in hematopoiesis. HDAC7 is involved in regulation of myocyte migration and differentiation. HDAC5 is involved in integration of chronic drug (cocaine) addiction and depression with changes in chromatin structure and gene expression. HDAC4 participates in regulation of chondrocyte hypertrophy and skeletogenesis. Length = 377
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1 (DMAP1) Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212556 cd11658, SANT_DMAP1_like, SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like Back     alignment and domain information
>gnl|CDD|212556 cd11658, SANT_DMAP1_like, SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 774
KOG2656|consensus445 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
KOG1343|consensus797 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342|consensus425 100.0
KOG2656|consensus445 100.0
PF05499176 DMAP1: DNA methyltransferase 1-associated protein 99.97
KOG1343|consensus 797 99.97
KOG1344|consensus324 99.8
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.59
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 96.08
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 96.06
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 95.17
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 95.11
PLN03212249 Transcription repressor MYB5; Provisional 94.78
PLN03091459 hypothetical protein; Provisional 94.57
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 94.43
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 94.35
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 92.91
PLN03091459 hypothetical protein; Provisional 91.5
PLN03212249 Transcription repressor MYB5; Provisional 91.14
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 80.75
>KOG2656|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-101  Score=814.77  Aligned_cols=354  Identities=50%  Similarity=0.855  Sum_probs=302.4

Q ss_pred             CcchhhHHhCCCCCCCcchhhhhhccccccccCCCCccccCCCCCCchHHHHHhhcCCCCCCCCcccccCCCcccchhhh
Q psy15137          1 MTSDIRDILELERDAPAEITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAK   80 (774)
Q Consensus         1 m~~Dv~diL~l~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~krp~Gm~REv~~Llg~~~~~~pp~~p~~~~~~~~~~k~k   80 (774)
                      |++||||||+|++++.+.        ..|+++++...+...+||+||+||||||||+   |+|||+|++++. |+.  ++
T Consensus         2 ~saDirDIL~l~~~t~~~--------~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~---n~pPL~ps~~~~-fke--k~   67 (445)
T KOG2656|consen    2 TSADIRDILELPQKTRSL--------TNKQKSKPRSSTESRRRPEGMSREVYALLGE---NAPPLLPSDTNN-FKE--KR   67 (445)
T ss_pred             CcccHHHHhcCCCCCCCC--------cccccccCCCchhccCCCcchhHHHHHHhcC---CCCCccccccch-hhh--cc
Confidence            589999999999863321        1222222222244678999999999999996   699999998753 554  57


Q ss_pred             hCCCCCccceeecCCCCCCCCCceEeeeeecCCCCCCCCCccccccccccccCHHHHHhhcCCCCCChhHHHHHHHHhhh
Q psy15137         81 LGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHR  160 (774)
Q Consensus        81 ~~~~k~~~W~~~~F~n~aR~D~l~l~HW~r~~~~~~~y~FakfN~~~~i~~yt~eeY~~~l~~~~Wt~eETd~Lf~Lc~~  160 (774)
                      ++++|+++|+|+||+||||+|+++||||||+++.++||||||||++|+||.||||||+.||.|+.||++||||||+||++
T Consensus        68 l~s~K~~~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~  147 (445)
T KOG2656|consen   68 LGSKKVRPWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKR  147 (445)
T ss_pred             CccccCCCceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CC--CCChHHHHHHHHHHHHHHccCHHHH
Q psy15137        161 FDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNE-PK--LFDAEHEKKRKEQLKRLFERTPEQV  237 (774)
Q Consensus       161 fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~~~~~~~~-~~--~fd~~~E~~RK~~l~~l~~rt~~q~  237 (774)
                      ||||||||+|||+.++++++|||||||+|||+||++|+++|++   ..++ .+  +||++||++||+||++||+||++|+
T Consensus       148 fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~---s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qv  224 (445)
T KOG2656|consen  148 FDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP---SNSDLLKSLVYDAEHERERKKYLERLLSRTPEQV  224 (445)
T ss_pred             cCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC---CchhhhhccccchHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999999999999999999999998   2233 33  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhhcc-------ccccccccccCCCCccccccCC----CCCc----ccc
Q psy15137        238 EEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADM-------QADNRKTDKKMPPKRKLTHQIR----PRSL----DTS  302 (774)
Q Consensus       238 ~eEe~L~~E~rrie~~~k~~~~~~~dl~kl~~~~~~-------~~~~~~~~~~~~~k~k~~~~~~----p~~~----~~a  302 (774)
                      +||++|++|+||||+++|+++++++||+|||+.+|.       ++.+...+.+..++ |..++..    |+++    .++
T Consensus       225 aEEe~Ll~E~KkiEarkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~a~-kt~~k~~~a~v~a~~~~s~~ss  303 (445)
T KOG2656|consen  225 AEEEALLVELKKIEARKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLENALLAK-KTRQKKHEANVPASPRESWMSS  303 (445)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhcccccccccccChhHHHHHHHHhhh-hhhcccccccCccccchhhhhh
Confidence            999999999999999999999999999999999994       33322222222211 1111110    1111    110


Q ss_pred             ------------------------c---chhhh-HHHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy15137        303 ------------------------V---KTTAF-QTLIDLG--LNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFEL  352 (774)
Q Consensus       303 ------------------------i---k~k~i-~~L~elg--~~p~pT~~ic~~~n~LR~di~~L~elrka~~~~E~El  352 (774)
                                              |   |+|++ |+|+++|  ++|.||+.+|..||+||+|+++|++|+.++..|++|+
T Consensus       304 ~~~F~~~~~~l~tlr~q~m~~panvgqrkiK~~EQ~lq~~~v~~sp~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~e~  383 (445)
T KOG2656|consen  304 GIKFADLRVALVTLRSQRMKQPANVGQRKIKRLEQELQELGVRLSPAPTEQLCKSFNELRSDVVTLLELSPALYLCEYEL  383 (445)
T ss_pred             hhhcccchhhhhccchhhccCccccchhhhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhh
Confidence                                    1   78999 9999999  7789999999999999999999999999999999999


Q ss_pred             HHhhhhc-cccCCCCccccCC
Q psy15137        353 QSLKHQY-EAVHPGETFQIPE  372 (774)
Q Consensus       353 ~~lr~~~-ea~~~~~~~~~p~  372 (774)
                      +++|+++ +++++..++.+|+
T Consensus       384 ~s~k~~~~~~~~~~~~l~~P~  404 (445)
T KOG2656|consen  384 SSLKHALNEALAILQELSLPS  404 (445)
T ss_pred             hhhhhhhhhhhhhhhhcCCCC
Confidence            9999999 8999999998883

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>KOG2656|consensus Back     alignment and domain information
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs) Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 6e-77
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 1e-76
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 3e-76
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 4e-76
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 7e-76
3hm5_A93 Sant Domain Of Human Dna Methyltransferase 1 Associ 1e-26
3hm5_A93 Sant Domain Of Human Dna Methyltransferase 1 Associ 1e-17
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 1e-19
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 1e-19
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 2e-11
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-11
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-11
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 2e-11
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 2e-11
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 2e-11
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-11
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 2e-11
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-11
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 2e-11
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 3e-11
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 3e-11
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 7e-11
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 2e-10
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 5e-10
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 5e-10
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-08
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 9e-06
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 9e-06
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  285 bits (729), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
           WDVHHGNGTQQ FYSD  VLY+S+HR+DDGNFFPG+G P E GTG G+GFN+N+A++G L
Sbjct: 195 WDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGL 254
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
           +PPMGDAEYLAAFRT+VMP+A EF P +VLVS+GFDA  GHP PLGGY LS  CFGY+T+
Sbjct: 255 DPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTK 314
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
           QLM LA G++VLALEGGYDL ++CD++EACV ALLG+   PL ++ L + P   AV +++
Sbjct: 315 QLMGLAGGRIVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSME 374
Query: 713 KTIAIQVSHWPVLKRSAHTITWSALSAA----EDNETVS 747
           K + I   +W  L+R+  T   S + A     E+ ETV+
Sbjct: 375 KVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVT 413
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|3HM5|A Chain A, Sant Domain Of Human Dna Methyltransferase 1 Associated Protein 1 Length = 93 Back     alignment and structure
>pdb|3HM5|A Chain A, Sant Domain Of Human Dna Methyltransferase 1 Associated Protein 1 Length = 93 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 1e-108
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 8e-07
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 2e-85
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 2e-04
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 4e-67
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 3e-60
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 2e-54
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-54
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-53
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-52
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 4e-40
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 4e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-07
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Length = 93 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Length = 93 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query774
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 100.0
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 100.0
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 99.96
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 99.93
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 96.98
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.29
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 96.13
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 95.86
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 95.74
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 95.39
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 95.17
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.03
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 94.91
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 94.88
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 94.86
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 94.52
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 93.43
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 94.3
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 94.27
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 94.2
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 94.19
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 94.01
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 93.77
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 93.66
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 93.65
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 93.57
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 93.56
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 93.47
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 93.46
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 93.43
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 93.26
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 93.2
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 92.94
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 92.48
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 92.48
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 92.47
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 92.46
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 92.22
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 92.2
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 91.18
2cjj_A93 Radialis; plant development, DNA-binding protein, 91.84
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 91.58
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 91.4
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 91.36
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 91.32
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 91.2
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 91.18
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 91.03
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 90.89
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 90.83
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 90.6
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 90.33
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 90.28
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 89.83
2cjj_A93 Radialis; plant development, DNA-binding protein, 89.3
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 88.45
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 88.37
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 88.21
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 87.96
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 87.9
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 87.81
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 87.55
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 86.41
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 86.15
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 83.73
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 82.25
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 81.2
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 80.99
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-63  Score=550.89  Aligned_cols=255  Identities=53%  Similarity=0.954  Sum_probs=233.0

Q ss_pred             hccCcccccC-Ccccchh--hhhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEccc
Q psy15137        482 FERTPEQCGT-GAGLGFN--INIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHR  558 (774)
Q Consensus       482 ~~Rtp~~~~~-~~glgf~--~nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSiH~  558 (774)
                      +.|||+||+. ..++|||  ||+|+         ||.|++..  ++++||||||||||||||||+|||+||+|||+|+|+
T Consensus       152 ~vrppGHHA~~~~a~GFC~~Nnvai---------aa~~~~~~--~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~  220 (413)
T 2vqm_A          152 VVRPPGHHAEESTPMGFCYFNSVAV---------AAKLLQQR--LSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHR  220 (413)
T ss_dssp             CCCSCCTTCBTTBCBTTBSSCHHHH---------HHHHHHHH--SCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEE
T ss_pred             ecccccccCcCCCCCCccccchHHH---------HHHHHHHh--cCCCeEEEEecccCCCccHHHHHhcCcccccccchh
Confidence            5799999984 4445555  46666         78888875  468999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCC
Q psy15137        559 HDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLG  638 (774)
Q Consensus       559 ~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~plg  638 (774)
                      +++++||||||..+|+|.|.|.|+|+||||+.|++++++|++|+.+|+.+|+|++++|+||+||||||||+|.+|||+||
T Consensus       221 ~~~~~f~pgtG~~~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg  300 (413)
T 2vqm_A          221 YDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLG  300 (413)
T ss_dssp             CGGGCSTTCCCCTTCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTC
T ss_pred             ccCCCCCCCCCCHHHcCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCC
Confidence            99899999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCCCCCCCCchhhccCCcHHHHHHHHHHHHHH
Q psy15137        639 GYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQ  718 (774)
Q Consensus       639 ~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~~~l~~~~~~~~~~~~a~~~l~~v~~~~  718 (774)
                      +|+||+++|++++++|+++|+||++++|||||++.++++|+.+++++|+|.+.++++...+...|+.+++++|++++++|
T Consensus       301 ~~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~~~~v~~~~  380 (413)
T 2vqm_A          301 GYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIH  380 (413)
T ss_dssp             CCCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888887777889999999999999999


Q ss_pred             hccCCCCcccccccCccccc----hhhhhHHHH
Q psy15137        719 VSHWPVLKRSAHTITWSALS----AAEDNETVS  747 (774)
Q Consensus       719 ~~~W~~l~~~~~~~~~s~~~----~~~~~~~~~  747 (774)
                      ++||+||++....+..+..|    +.+|.||||
T Consensus       381 ~~~W~~l~~~~~~~~~~~~~~~~~~~~e~e~v~  413 (413)
T 2vqm_A          381 SKYWRCLQRTTSTAGRSLIEAQTCENEEAETVT  413 (413)
T ss_dssp             HTTCGGGTSCCCCTTSCHHHHHHTTCC------
T ss_pred             HHHhhhhhcchhhcCcCcchhhhhcchhccccC
Confidence            99999999999999988876    678999986
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 774
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-57
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 3e-29
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 2e-27
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  199 bits (505), Expect = 2e-57
 Identities = 124/195 (63%), Positives = 152/195 (77%)

Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
           WDVHHGNGTQQ FY D  VLY+S+HRHDDGNFFPG+G   E G G+G GFN+N+AW+G L
Sbjct: 192 WDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGL 251

Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
           +PPMGD EYLAAFR +VMP+A+EF P +VLVSAGFDAA GHP PLGGY +S  CFGYMTQ
Sbjct: 252 DPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQ 311

Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
           QLM LA G VVLALEGG+DL ++CD++EACV ALLG+   PLS+E   + P L A+ +L+
Sbjct: 312 QLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLE 371

Query: 713 KTIAIQVSHWPVLKR 727
             I +   +W  ++R
Sbjct: 372 AVIRVHSKYWGCMQR 386
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query774
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.47
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 96.41
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 96.13
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.07
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 96.05
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 95.89
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 95.13
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 94.97
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 94.9
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 94.84
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 94.74
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 94.69
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 94.64
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 94.22
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 93.74
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 93.1
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 93.01
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 92.99
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 92.85
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 92.83
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 92.76
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 92.72
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 92.1
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 91.72
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 91.46
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 90.51
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 89.93
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 83.12
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 80.43
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-58  Score=508.65  Aligned_cols=235  Identities=56%  Similarity=1.026  Sum_probs=218.2

Q ss_pred             hccCcccccC-Ccccchhh--hhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEccc
Q psy15137        482 FERTPEQCGT-GAGLGFNI--NIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHR  558 (774)
Q Consensus       482 ~~Rtp~~~~~-~~glgf~~--nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSiH~  558 (774)
                      +.|+|+||+. ..+.|||+  |+|+         ||.|++.++  +++||+|||||||||||||+|||+||+|+|+|||+
T Consensus       149 ~~rppGHHA~~~~~~GFC~fNdvAi---------aa~~l~~~~--~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~  217 (386)
T d3c10a1         149 VVRPPGHHADHSTAMGFCFFNSVAI---------ACRQLQQQS--KASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHR  217 (386)
T ss_dssp             CCSSCCTTCBTTBCBTTBSSCHHHH---------HHHHHHHHS--TTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEE
T ss_pred             ccccccccccccccCCcccccHHHH---------HHHHHHhhc--ccCCceEEecccCCCCceeeEeecccccccccccc
Confidence            4799999984 44566665  5565         889998764  48999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCC
Q psy15137        559 HDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLG  638 (774)
Q Consensus       559 ~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~plg  638 (774)
                      ++.++|||+||..+|+|.|.|.|+|+|+|||.|++++++|++|+.+|+.+|.|++++|+||+||||||||+|.+|++|||
T Consensus       218 ~~~~~~~p~tG~~~e~G~g~g~g~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg  297 (386)
T d3c10a1         218 HDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLG  297 (386)
T ss_dssp             CTTTTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGC
T ss_pred             ccccccCCCCCCHHhcCCCCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCccccccCcchhh
Confidence            99899999999999999999999999999999999999999999999999999999999999999999999999977899


Q ss_pred             ccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCCCCCCCCchhhccCCcHHHHHHHHHHHHHH
Q psy15137        639 GYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQ  718 (774)
Q Consensus       639 ~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~~~l~~~~~~~~~~~~a~~~l~~v~~~~  718 (774)
                      +|+||+++|.+++++|+++|+||++++||||||+.++++++.+++++|+|.+.+++.+......|+.+++++|++++++|
T Consensus       298 ~l~lt~~~~~~~~~~l~~~~~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  377 (386)
T d3c10a1         298 GYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVH  377 (386)
T ss_dssp             CCBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccccccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988877766666678889999999999999


Q ss_pred             hccCCCCcc
Q psy15137        719 VSHWPVLKR  727 (774)
Q Consensus       719 ~~~W~~l~~  727 (774)
                      ++||+||++
T Consensus       378 ~~~w~~~~~  386 (386)
T d3c10a1         378 SKYWGCMQR  386 (386)
T ss_dssp             TTTCGGGCC
T ss_pred             HHhhHhhcC
Confidence            999999985
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure