Psyllid ID: psy15140


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
MTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEKPKKN
ccHHHHHHHHHHHHccccccccccccHHHHHccccHHHHccccHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccHHHHHHHHHHHHcccccccHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MTISEIRENLNQAlndeskpwapfltLAEQKTGVKRIYIVLDSGTMTISEIRENLNQalndeskpwapfltLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIEsenkqddtkwLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWcfapmenngsifiynriirpkflehesFINSAFTKATDSAVKFATAKILEAEKPKKN
MTISEIRENLNQalndeskpwapfltlaeqktgvKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAkileaekpkkn
MTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEKPKKN
********************WAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIE****QDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKI*********
**************************************************IRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKA*********************
MTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEKPKKN
*TISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEK****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEKPKKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
B2RZ37189 Receptor expression-enhan yes N/A 0.784 0.941 0.502 3e-46
Q5RE33189 Receptor expression-enhan yes N/A 0.784 0.941 0.508 3e-46
Q00765189 Receptor expression-enhan yes N/A 0.784 0.941 0.508 4e-46
Q29RM3189 Receptor expression-enhan yes N/A 0.766 0.920 0.508 9e-46
Q60870185 Receptor expression-enhan yes N/A 0.775 0.951 0.508 2e-45
Q96HR9184 Receptor expression-enhan no N/A 0.674 0.831 0.467 8e-39
Q32LG5185 Receptor expression-enhan no N/A 0.678 0.832 0.467 2e-37
Q5XI60211 Receptor expression-enhan no N/A 0.651 0.701 0.483 5e-32
Q9JM62201 Receptor expression-enhan no N/A 0.651 0.736 0.476 3e-30
Q4P0H0172 Protein YOP1 OS=Ustilago N/A N/A 0.590 0.779 0.407 2e-23
>sp|B2RZ37|REEP5_RAT Receptor expression-enhancing protein 5 OS=Rattus norvegicus GN=Reep5 PE=1 SV=1 Back     alignment and function desciption
 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 119/179 (66%), Gaps = 1/179 (0%)

Query: 49  SEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNC 108
           + +RE  ++ L+ E       L   E KTGV R +I LG+IG +ALYLVFGY A ++CN 
Sbjct: 3   AAMRERFDRFLH-EKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNL 61

Query: 109 IGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFF 168
           IGF YPAY SMKAIES NK DDT+WLTYWVV+ +FSI E+ ++  LS FPFY+++KC F 
Sbjct: 62  IGFGYPAYISMKAIESPNKDDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFL 121

Query: 169 IWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEKPKKN 227
           +WC AP  +NG+  +Y R+IRP FL+HES ++S      D A + A A   E +K   N
Sbjct: 122 LWCMAPSPSNGAELLYRRVIRPIFLKHESQVDSVVKDVKDKAKETADAISKEVKKATVN 180




May promote functional cell surface expression of olfactory receptors.
Rattus norvegicus (taxid: 10116)
>sp|Q5RE33|REEP5_PONAB Receptor expression-enhancing protein 5 OS=Pongo abelii GN=REEP5 PE=2 SV=1 Back     alignment and function description
>sp|Q00765|REEP5_HUMAN Receptor expression-enhancing protein 5 OS=Homo sapiens GN=REEP5 PE=1 SV=3 Back     alignment and function description
>sp|Q29RM3|REEP5_BOVIN Receptor expression-enhancing protein 5 OS=Bos taurus GN=REEP5 PE=2 SV=1 Back     alignment and function description
>sp|Q60870|REEP5_MOUSE Receptor expression-enhancing protein 5 OS=Mus musculus GN=Reep5 PE=1 SV=1 Back     alignment and function description
>sp|Q96HR9|REEP6_HUMAN Receptor expression-enhancing protein 6 OS=Homo sapiens GN=REEP6 PE=1 SV=1 Back     alignment and function description
>sp|Q32LG5|REEP6_BOVIN Receptor expression-enhancing protein 6 OS=Bos taurus GN=REEP6 PE=2 SV=1 Back     alignment and function description
>sp|Q5XI60|REEP6_RAT Receptor expression-enhancing protein 6 OS=Rattus norvegicus GN=Reep6 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM62|REEP6_MOUSE Receptor expression-enhancing protein 6 OS=Mus musculus GN=Reep6 PE=2 SV=1 Back     alignment and function description
>sp|Q4P0H0|YOP1_USTMA Protein YOP1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=YOP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
189239379175 PREDICTED: similar to receptor expressio 0.731 0.948 0.548 7e-53
307189558180 Receptor expression-enhancing protein 5 0.757 0.955 0.552 8e-53
114050941166 receptor expression enhancing protein is 0.678 0.927 0.610 1e-52
307193003180 Receptor expression-enhancing protein 5 0.775 0.977 0.517 4e-52
160333595175 receptor expression enhancing protein is 0.704 0.914 0.587 1e-51
383847140180 PREDICTED: receptor expression-enhancing 0.775 0.977 0.528 1e-50
156548184179 PREDICTED: receptor expression-enhancing 0.766 0.972 0.542 1e-50
357608047252 receptor expression enhancing protein is 0.678 0.611 0.590 1e-50
332373496174 unknown [Dendroctonus ponderosae] 0.722 0.942 0.557 2e-49
350427137180 PREDICTED: receptor expression-enhancing 0.678 0.855 0.577 6e-49
>gi|189239379|ref|XP_971918.2| PREDICTED: similar to receptor expression enhancing protein [Tribolium castaneum] gi|270009667|gb|EFA06115.1| hypothetical protein TcasGA2_TC008958 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 127/166 (76%)

Query: 48  ISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICN 107
           ++EI+E LN++L+D+SKPW+  L   E KTGV R+YI +G I  + L+LVFGYAAQ++CN
Sbjct: 5   VAEIKEELNKSLHDKSKPWSSLLATVEAKTGVDRLYIFIGSIAIIGLWLVFGYAAQLVCN 64

Query: 108 CIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIF 167
            +GF+YPAY S++AIES+ K DDTKWLTYWVVFA+FSI+E+ ++ I+  FP YWL+KC+F
Sbjct: 65  TVGFVYPAYVSIRAIESKQKDDDTKWLTYWVVFAIFSILEFFSDLIVGWFPLYWLMKCVF 124

Query: 168 FIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKF 213
           F+W   P E NGS+ +Y +I+RP FL+H + ++    KA DSA K 
Sbjct: 125 FVWLMIPTELNGSLILYKKIVRPYFLKHHNSVDEVLAKAKDSANKL 170




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189558|gb|EFN73928.1| Receptor expression-enhancing protein 5 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|114050941|ref|NP_001040329.1| receptor expression enhancing protein isoform 2 [Bombyx mori] gi|87248617|gb|ABD36361.1| receptor expression enhancing protein isoform 2 [Bombyx mori] Back     alignment and taxonomy information
>gi|307193003|gb|EFN75991.1| Receptor expression-enhancing protein 5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|160333595|ref|NP_001103774.1| receptor expression enhancing protein isoform 1 [Bombyx mori] gi|87248615|gb|ABD36360.1| receptor expression enhancing protein isoform 1 [Bombyx mori] Back     alignment and taxonomy information
>gi|383847140|ref|XP_003699213.1| PREDICTED: receptor expression-enhancing protein 5-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|156548184|ref|XP_001606968.1| PREDICTED: receptor expression-enhancing protein 5-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|357608047|gb|EHJ65797.1| receptor expression enhancing protein isoform 2 [Danaus plexippus] Back     alignment and taxonomy information
>gi|332373496|gb|AEE61889.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|350427137|ref|XP_003494664.1| PREDICTED: receptor expression-enhancing protein 5-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
UNIPROTKB|Q00765189 REEP5 "Receptor expression-enh 0.775 0.931 0.514 3.1e-44
RGD|1306047189 Reep5 "receptor accessory prot 0.775 0.931 0.508 3.9e-44
UNIPROTKB|Q29RM3189 REEP5 "Receptor expression-enh 0.757 0.910 0.514 8.1e-44
MGI|MGI:1270152185 Reep5 "receptor accessory prot 0.775 0.951 0.508 3.5e-43
ZFIN|ZDB-GENE-050320-111184 zgc:101744 "zgc:101744" [Danio 0.625 0.771 0.514 2.6e-40
RGD|1309508211 Reep6 "receptor accessory prot 0.651 0.701 0.483 2.4e-37
UNIPROTKB|Q96HR9184 REEP6 "Receptor expression-enh 0.669 0.826 0.470 3e-37
MGI|MGI:1917585201 Reep6 "receptor accessory prot 0.651 0.736 0.476 3.9e-37
WB|WBGene00022127183 yop-1 [Caenorhabditis elegans 0.740 0.918 0.426 4.9e-37
ZFIN|ZDB-GENE-040912-98208 reep6 "receptor accessory prot 0.726 0.793 0.415 8e-37
UNIPROTKB|Q00765 REEP5 "Receptor expression-enhancing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 91/177 (51%), Positives = 120/177 (67%)

Query:    51 IRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIG 110
             +RE  ++ L+ E       L   E KTGV R +I LG+IG +ALYLVFGY A ++CN IG
Sbjct:     5 MRERFDRFLH-EKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNLIG 63

Query:   111 FLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIW 170
             F YPAY S+KAIES NK+DDT+WLTYWVV+ +FSI E+ ++  LS FPFY+++KC F +W
Sbjct:    64 FGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYMLKCGFLLW 123

Query:   171 CFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAEKPKKN 227
             C AP  +NG+  +Y RIIRP FL+HES ++S      D A + A A   EA+K   N
Sbjct:   124 CMAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKAKETADAITKEAKKATVN 180




GO:0016021 "integral to membrane" evidence=NAS
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
RGD|1306047 Reep5 "receptor accessory protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RM3 REEP5 "Receptor expression-enhancing protein 5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1270152 Reep5 "receptor accessory protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-111 zgc:101744 "zgc:101744" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1309508 Reep6 "receptor accessory protein 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HR9 REEP6 "Receptor expression-enhancing protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1917585 Reep6 "receptor accessory protein 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00022127 yop-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-98 reep6 "receptor accessory protein 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6CE07YOP1_YARLINo assigned EC number0.34690.62550.7513yesN/A
Q75A56YOP1_ASHGONo assigned EC number0.37160.62110.75yesN/A
Q00765REEP5_HUMANNo assigned EC number0.50830.78410.9417yesN/A
Q4WTW3YOP1_ASPFUNo assigned EC number0.33550.60790.8165yesN/A
Q29RM3REEP5_BOVINNo assigned EC number0.50850.76650.9206yesN/A
Q6FMU3YOP1_CANGANo assigned EC number0.34020.61230.7853yesN/A
Q6BWH8YOP1_DEBHANo assigned EC number0.350.68720.8813yesN/A
Q5RE33REEP5_PONABNo assigned EC number0.50830.78410.9417yesN/A
Q5BB01YOP1_EMENINo assigned EC number0.32540.66510.8934yesN/A
Q9UU91YOP1_SCHPONo assigned EC number0.36980.63870.7967yesN/A
Q60870REEP5_MOUSENo assigned EC number0.50840.77530.9513yesN/A
B2RZ37REEP5_RATNo assigned EC number0.50270.78410.9417yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
pfam0313494 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family 1e-38
COG5052186 COG5052, YOP1, Protein involved in membrane traffi 7e-22
>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family Back     alignment and domain information
 Score =  128 bits (324), Expect = 1e-38
 Identities = 45/93 (48%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 98  FGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIF 157
           FG  A+++ N IGFLYPAY S KA+ES++K+DDT+WLTYWVV++  ++ E  ++ ILS  
Sbjct: 1   FGIGARLLSNLIGFLYPAYASYKALESKDKEDDTQWLTYWVVYSFLTLFESFSDIILSWI 60

Query: 158 PFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRP 190
           PFY+ +K +F +W   P +  G+ +IY++ IRP
Sbjct: 61  PFYYELKLLFLVWLVLP-KTQGASYIYDKFIRP 92


This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein. Length = 94

>gnl|CDD|227385 COG5052, YOP1, Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
KOG1725|consensus186 100.0
PF0313494 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IP 99.96
KOG1726|consensus225 99.96
COG5052186 YOP1 Protein involved in membrane traffic [Intrace 99.96
KOG1725|consensus186 99.63
KOG1726|consensus225 97.61
COG5052186 YOP1 Protein involved in membrane traffic [Intrace 97.46
PF0313494 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IP 97.04
>KOG1725|consensus Back     alignment and domain information
Probab=100.00  E-value=1.2e-40  Score=280.06  Aligned_cols=154  Identities=46%  Similarity=0.880  Sum_probs=144.3

Q ss_pred             HHHHHHhhccCCCChHHH-HHHHHHHhCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHHHHhcCCchhh
Q psy15140         52 RENLNQALNDESKPWAPF-LTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDD  130 (227)
Q Consensus        52 ~~~i~~~L~~~~~~~~~~-l~~iE~~tgv~~~~~~~~~v~v~~l~l~~g~~a~ll~~~ig~~yPay~s~kal~~~~~~d~  130 (227)
                      .+.++.+|.+.+++++.. +..+|++||++|++++.+.++++++|+++|.+++++||++|++||+|.|++++|+++++||
T Consensus         7 ~~~i~~~l~~~~~~~~~~~f~~~E~~tgv~r~~~~~g~~~l~~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD   86 (186)
T KOG1725|consen    7 KSDIKSQLKECMKPWTEGIFDQLEKFTGVPREYVFAGAILLLAVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDD   86 (186)
T ss_pred             hhhHHHHHHhcccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcch
Confidence            567777777765545555 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHhHhhhcchhhHHHHHHHHHhhcCCCcchHHHHHhHhhccccccchhhHHHHHHHH
Q psy15140        131 TKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKA  206 (227)
Q Consensus       131 ~~WL~YWvv~~~~~~~E~~~~~il~~iPfY~~~K~~fllwL~~P~~~~GA~~iY~~~i~P~l~~~e~~ID~~i~~~  206 (227)
                      ++||+||++||+++++|.+++.+++|+|+||++|++|++||++|++ +||.++|++++||++.+|+.++|+..+.-
T Consensus        87 ~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~~-~Ga~~iY~~~vrp~~~~~~~~~~~~~~~~  161 (186)
T KOG1725|consen   87 TQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQF-NGAAIIYNHIVRPFFLKHSREIDDIEDAN  161 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccCC-CCceeeechhhhhhhhhhhhhhhhhhhcc
Confidence            9999999999999999999999999999999999999999999988 99999999999999999999999887643



>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes Back     alignment and domain information
>KOG1726|consensus Back     alignment and domain information
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1725|consensus Back     alignment and domain information
>KOG1726|consensus Back     alignment and domain information
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00