Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 95
cd00712 220
cd00712, AsnB, Glutamine amidotransferases class-I
2e-20 TIGR01536 466
TIGR01536, asn_synth_AEB, asparagine synthase (glu
2e-14 COG0367 542
COG0367, AsnB, Asparagine synthase (glutamine-hydr
1e-13 PRK09431 554
PRK09431, asnB, asparagine synthetase B; Provision
1e-11 pfam13537 120
pfam13537, GATase_7, Glutamine amidotransferase do
1e-08 cd00352 220
cd00352, Gn_AT_II, Glutamine amidotransferases cla
1e-08 PLN02549 578
PLN02549, PLN02549, asparagine synthase (glutamine
3e-08 PTZ00077 586
PTZ00077, PTZ00077, asparagine synthetase-like pro
3e-08 TIGR03108 628
TIGR03108, eps_aminotran_1, exosortase A system-as
1e-07 pfam13522 130
pfam13522, GATase_6, Glutamine amidotransferase do
9e-06 TIGR03104 589
TIGR03104, trio_amidotrans, asparagine synthase fa
1e-04
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type
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Score = 80.7 bits (200), Expect = 2e-20
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 2 CGIWAIFGHE-TSNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYG 60
CGI I G + S + E + HRGPD I D V +G RL I+D G
Sbjct: 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWIDEGV---ALGHRRLSIIDLSGG 57
Query: 61 MQPMKLHRYPRVTLICNGEIYNFKRL 86
QPM R+ L+ NGEIYN++ L
Sbjct: 58 AQPMVSED-GRLVLVFNGEIYNYREL 82
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. Length = 220
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Score = 66.6 bits (163), Expect = 2e-14
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 4 IWAIFGHET---SNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYG 60
I F + + I HRGPDA IEY + +G RL I+D G
Sbjct: 1 IAGFFDLDDKAVEEDEAILRMS-DTIAHRGPDASGIEYKDGNAI--LGHRRLAIIDLSGG 57
Query: 61 MQPMKLHRYPRVTLICNGEIYNFKRL 86
QPM ++ NGEIYN + L
Sbjct: 58 AQPMSN-EGKTYVIVFNGEIYNHEEL 82
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff [Amino acid biosynthesis, Aspartate family]. Length = 466
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 64.0 bits (156), Expect = 1e-13
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 1 MCGIWAIFGHETSNYLTSCEHNFVK----IQHRGPDAWRIEYDNHVKKTYVGFHRLEIVD 56
MCGI G L + + ++HRGPD + + +G RL IVD
Sbjct: 1 MCGI---AGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWISLNAL---LGHRRLSIVD 54
Query: 57 SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QPM + ++ NGEIYN + L
Sbjct: 55 LSGGRQPMIK-EGGKYAIVYNGEIYNVEEL 83
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional
Back Show alignment and domain information
Score = 58.4 bits (142), Expect = 1e-11
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL 58
MCGI+ I +T ++HRGPD W Y + +G RL IVD
Sbjct: 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPD-WSGIYAS--DNAILGHERLSIVDVN 57
Query: 59 YGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ V L NGEIYN + L
Sbjct: 58 GGAQPLYNEDGTHV-LAVNGEIYNHQEL 84
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain
Back Show alignment and domain information
Score = 47.9 bits (115), Expect = 1e-08
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 51 RLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
RL I DS G QPM + R ++ NGEIYN++ L
Sbjct: 3 RLSIDDSEGGAQPM-VSEDGRYVIVFNGEIYNYREL 37
This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes such as asparagine synthetase and glutamine-fructose-6-phosphate transaminase. Length = 120
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)
Back Show alignment and domain information
Score = 49.4 bits (118), Expect = 1e-08
Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 29/113 (25%)
Query: 2 CGIWAIFGH--ETSNYLTSCEHNFVKIQHRGPDAWRI----------------------E 37
CGI+ I G S L ++HRGPD I +
Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD 60
Query: 38 YDNHVKKTYVGF--HRLEIVD--SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
+ K+ V RL S QP R+ L+ NGEIYN++ L
Sbjct: 61 LLDEPLKSGVALGHVRLATNGLPSEANAQPF-RSEDGRIALVHNGEIYNYREL 112
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Score = 49.0 bits (117), Expect = 3e-08
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 1 MCGIWAIFG-HETSNYLTSCEHNFVK-IQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL 58
MCGI A+ G + S S + ++HRGPD W Y N + Y+ RL I+D
Sbjct: 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPD-WSGLYGN--EDCYLAHERLAIMDPE 57
Query: 59 YGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ + + + NGEIYN K L
Sbjct: 58 SGDQPL-YNEDKTIVVTANGEIYNHKEL 84
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional
Back Show alignment and domain information
Score = 48.9 bits (117), Expect = 3e-08
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 1 MCGIWAIFG-HETSNYLTSCEHNFVK-IQHRGPDAWRIEYDNHVKKTY--VGFHRLEIVD 56
MCGI AIF + L K ++HRGPD I + TY + RL IVD
Sbjct: 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVD 60
Query: 57 SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ V L+ NGEIYN +
Sbjct: 61 LSDGKQPLLDDDET-VALMQNGEIYNHWEI 89
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1
Back Show alignment and domain information
Score = 47.0 bits (112), Expect = 1e-07
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 1 MCGIWAIFGHETSNYLTSCE--HNFVKIQ-HRGPDAWRIEYDNHVKKTYVGFHRLEIVDS 57
MCGI IF T + Q HRGPD + + + +G RL I+D
Sbjct: 1 MCGITGIF-DLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIG---LGHRRLSIIDL 56
Query: 58 LYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ + V ++ NGEIYNF+ L
Sbjct: 57 SGGQQPLF-NEDGSVVVVFNGEIYNFQEL 84
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. Length = 628
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain
Back Show alignment and domain information
Score = 40.7 bits (96), Expect = 9e-06
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 31 PDAWRIEYDNHVKKTYVGFHRLEIVD-SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
PD + D + +G RL IVD S G QPM L R+ L+ NGEIYNF L
Sbjct: 1 PDFSGLWVDGGI---ALGHVRLAIVDLSEAGAQPM-LSADGRLVLVHNGEIYNFGEL 53
This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes, such as asparagine synthetase and glutamine--fructose-6-phosphate transaminase. Length = 130
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase
Back Show alignment and domain information
Score = 38.5 bits (90), Expect = 1e-04
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 RGPDAWRIEYDNHVKKTYVGFHRLEIVD-SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
RGPDA + V +G RL+I+D S QPM + + L+ NG IYN++ L
Sbjct: 30 RGPDAGGVHAQGPVA---LGHRRLKIIDLSEASQQPM-VDPELGLALVFNGCIYNYREL 84
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. Length = 589
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
95
PRK09431 554
asnB asparagine synthetase B; Provisional
99.95 PTZ00077 586
asparagine synthetase-like protein; Provisional
99.95 COG0367 542
AsnB Asparagine synthase (glutamine-hydrolyzing) [
99.95 PLN02549 578
asparagine synthase (glutamine-hydrolyzing)
99.94 TIGR03104 589
trio_amidotrans asparagine synthase family amidotr
99.94 TIGR03108 628
eps_aminotran_1 exosortase 1 system-associated ami
99.94 PRK08525 445
amidophosphoribosyltransferase; Provisional
99.94 cd00714 215
GFAT Glutamine amidotransferases class-II (Gn-AT)_
99.93 cd03766 181
Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn
99.93 PRK06388 474
amidophosphoribosyltransferase; Provisional
99.92 PRK07272 484
amidophosphoribosyltransferase; Provisional
99.92 PRK09123 479
amidophosphoribosyltransferase; Provisional
99.92 PRK07349 500
amidophosphoribosyltransferase; Provisional
99.92 PRK07631 475
amidophosphoribosyltransferase; Provisional
99.92 PRK08341 442
amidophosphoribosyltransferase; Provisional
99.92 PRK00331 604
glucosamine--fructose-6-phosphate aminotransferase
99.91 PRK09246 501
amidophosphoribosyltransferase; Provisional
99.91 PRK06781 471
amidophosphoribosyltransferase; Provisional
99.91 cd00712 220
AsnB Glutamine amidotransferases class-II (GATase)
99.91 PTZ00295 640
glucosamine-fructose-6-phosphate aminotransferase;
99.91 PRK07847 510
amidophosphoribosyltransferase; Provisional
99.91 PRK05793 469
amidophosphoribosyltransferase; Provisional
99.9 TIGR01536 467
asn_synth_AEB asparagine synthase (glutamine-hydro
99.9 PLN02981 680
glucosamine:fructose-6-phosphate aminotransferase
99.9 cd01907 249
GlxB Glutamine amidotransferases class-II (Gn-AT)_
99.89 TIGR01135 607
glmS glucosamine--fructose-6-phosphate aminotransf
99.89 PLN02440 479
amidophosphoribosyltransferase
99.89 PTZ00394 670
glucosamine-fructose-6-phosphate aminotransferase;
99.89 cd00715 252
GPATase_N Glutamine amidotransferases class-II (GN
99.88 TIGR01134 442
purF amidophosphoribosyltransferase. Alternate nam
99.86 KOG0571|consensus 543
99.83 COG0034 470
PurF Glutamine phosphoribosylpyrophosphate amidotr
99.83 COG0449 597
GlmS Glucosamine 6-phosphate synthetase, contains
99.82 cd00352 220
Gn_AT_II Glutamine amidotransferases class-II (GAT
99.8 KOG0572|consensus 474
99.75 KOG1268|consensus 670
99.75 PF13522 133
GATase_6: Glutamine amidotransferase domain
99.54 PF13537 125
GATase_7: Glutamine amidotransferase domain; PDB:
99.36 TIGR03442 251
conserved hypothetical protein TIGR03442. Members
99.3 cd01908 257
YafJ Glutamine amidotransferases class-II (Gn-AT)_
99.14 KOG0573|consensus 520
99.13 PF00310 361
GATase_2: Glutamine amidotransferases class-II; In
99.09 PF13230 271
GATase_4: Glutamine amidotransferases class-II; PD
98.46 cd01909 199
betaLS_CarA_N Glutamine amidotransferases class-II
98.44 cd00713 413
GltS Glutamine amidotransferases class-II (Gn-AT),
98.37 cd01910 224
Wali7 This domain is present in Wali7, a protein o
97.98 COG0121 252
Predicted glutamine amidotransferase [General func
97.94 COG0067 371
GltB Glutamate synthase domain 1 [Amino acid trans
97.49 COG0067 371
GltB Glutamate synthase domain 1 [Amino acid trans
97.11 PRK11750 1485
gltB glutamate synthase subunit alpha; Provisional
93.09 PRK11582 169
flagella biosynthesis protein FliZ; Provisional
82.96 TIGR03823 168
FliZ flagellar regulatory protein FliZ. FliZ is in
82.89
>PRK09431 asnB asparagine synthetase B; Provisional
Back Hide alignment and domain information
Probab=99.95 E-value=5.3e-28 Score=181.11 Aligned_cols=88 Identities=33% Similarity=0.468 Sum_probs=74.9
Q ss_pred CeeEEEEeCCCCCCc--ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNY--LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~--~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|+++.+.+.. ......|+.+|+|||||++++|..+ +++|||+||+|+|++.+.||+.+.+ ++++|+|||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~lgh~RLsIid~~~g~QP~~~~~-~~~~lv~NG 76 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASD---NAILGHERLSIVDVNGGAQPLYNED-GTHVLAVNG 76 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeC---CeEEEEEEeeecCCCCCCCCCCcCC-CCEEEEEEE
Confidence 999999997532221 1234457889999999999999875 6789999999999988999999887 889999999
Q ss_pred eEcChHHHHHHHHh
Q psy15141 79 EIYNFKRLGVQVRS 92 (95)
Q Consensus 79 eIyN~~eL~~~L~~ 92 (95)
||||+.|||++|..
T Consensus 77 EIyN~~eLr~~L~~ 90 (554)
T PRK09431 77 EIYNHQELRAELGD 90 (554)
T ss_pred EEecHHHHHHHHhc
Confidence 99999999999965
>PTZ00077 asparagine synthetase-like protein; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=6.5e-28 Score=181.52 Aligned_cols=92 Identities=32% Similarity=0.410 Sum_probs=74.6
Q ss_pred CeeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEec--CCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEE
Q psy15141 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDN--HVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLIC 76 (95)
Q Consensus 1 McGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~--~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~ 76 (95)
||||+|+++....... .....|+.+|+|||||++++|... ..+.++|||+||+|+|++.+.|||.+++ ++++|+|
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d-~~~~lv~ 79 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDD-ETVALMQ 79 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCC-CCEEEEE
Confidence 9999999975322211 123346779999999999999751 1125789999999999988999999987 8899999
Q ss_pred eeeEcChHHHHHHHHhc
Q psy15141 77 NGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 77 NGeIyN~~eL~~~L~~~ 93 (95)
||||||+.+||++|..+
T Consensus 80 NGEIYN~~eLr~~L~~~ 96 (586)
T PTZ00077 80 NGEIYNHWEIRPELEKE 96 (586)
T ss_pred EEEEcCHHHHHHHHHhc
Confidence 99999999999999754
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.95 E-value=7.2e-28 Score=180.00 Aligned_cols=89 Identities=33% Similarity=0.471 Sum_probs=76.3
Q ss_pred CeeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeee
Q psy15141 1 MCGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 1 McGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGe 79 (95)
||||+|++..+.... ......|..+|.|||||++|+|... +++|||+||+|+|+..+.||+.+++ ++++|+||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~~gh~rL~i~d~~~g~QP~~~~~-~~~~l~~NGE 76 (542)
T COG0367 1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWISL---NALLGHRRLSIVDLSGGRQPMIKEG-GKYAIVYNGE 76 (542)
T ss_pred CCceeeeecccccccchHHHHHHHHHhhccCCCccccEecC---CceeeeeEEEEeccccCCCCcccCC-CcEEEEECCE
Confidence 999999999751111 2345567889999999999999954 7899999999999988999999966 7799999999
Q ss_pred EcChHHHHHHHHhc
Q psy15141 80 IYNFKRLGVQVRSQ 93 (95)
Q Consensus 80 IyN~~eL~~~L~~~ 93 (95)
|||+.|||++|..+
T Consensus 77 IYN~~elr~~l~~~ 90 (542)
T COG0367 77 IYNVEELRKELREA 90 (542)
T ss_pred eeeHHHHHHHHHhc
Confidence 99999999999863
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Probab=99.94 E-value=3.1e-27 Score=177.63 Aligned_cols=87 Identities=31% Similarity=0.526 Sum_probs=73.8
Q ss_pred CeeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|+++.+.+... .....|+.+|+|||||++++|..+ .++|||+||+|+|+..+.||+.+.+ ++++|+|||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~Lgh~RLsI~d~~~g~QP~~~~~-~~~~lv~NG 76 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNE---DCYLAHERLAIMDPESGDQPLYNED-KTIVVTANG 76 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeC---CeEEEEeeeeEeCCCCCCCCcCcCC-CCEEEEEEE
Confidence 9999999975322211 223456789999999999999875 5789999999999988999999987 889999999
Q ss_pred eEcChHHHHHHHH
Q psy15141 79 EIYNFKRLGVQVR 91 (95)
Q Consensus 79 eIyN~~eL~~~L~ 91 (95)
||||+.+||++|.
T Consensus 77 EIyN~~eLr~~L~ 89 (578)
T PLN02549 77 EIYNHKELREKLK 89 (578)
T ss_pred EEEcHHHHHHHHH
Confidence 9999999999986
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase
Back Show alignment and domain information
Probab=99.94 E-value=4.4e-27 Score=177.17 Aligned_cols=89 Identities=27% Similarity=0.448 Sum_probs=74.7
Q ss_pred CeeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCC-CCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL-YGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~-~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|++..+.... ......|+.+|+|||||++|+|..+ +++|||+||+|+|++ .+.||+.+.+ ++++|||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~lgh~rl~i~~~~~~~~QP~~~~~-~~~~~v~nG 76 (589)
T TIGR03104 1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHAQG---PVALGHRRLKIIDLSEASQQPMVDAE-LGLALVFNG 76 (589)
T ss_pred CcEEEEEEecCCCcchHHHHHHHHHhhcCCCCCcCCcEecC---CEEEEEEeeEecCCCcCCCCCeECCC-CCEEEEECC
Confidence 999999996532221 1233457789999999999999875 689999999999984 7999999887 889999999
Q ss_pred eEcChHHHHHHHHhc
Q psy15141 79 EIYNFKRLGVQVRSQ 93 (95)
Q Consensus 79 eIyN~~eL~~~L~~~ 93 (95)
||||+.|||++|+.+
T Consensus 77 eiyN~~eL~~~l~~~ 91 (589)
T TIGR03104 77 CIYNYRELRAELEAL 91 (589)
T ss_pred EecCHHHHHHHHHhc
Confidence 999999999999764
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1
Back Show alignment and domain information
Probab=99.94 E-value=6.7e-27 Score=176.99 Aligned_cols=89 Identities=31% Similarity=0.470 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|++..+.+... .....|+.+|+|||||++++|..+ +++|||+||+|+|++.+.||+.+.+ ++++|||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~---~~~lgh~rl~i~d~~~~~qP~~~~~-~~~~lv~nG 76 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEP---GIGLGHRRLSIIDLSGGQQPLFNED-GSVVVVFNG 76 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeC---CEEEEEEeeeecCCCCCCCCcCcCC-CCEEEEECC
Confidence 9999999965322111 233446789999999999999875 6899999999999878999999887 889999999
Q ss_pred eEcChHHHHHHHHhc
Q psy15141 79 EIYNFKRLGVQVRSQ 93 (95)
Q Consensus 79 eIyN~~eL~~~L~~~ 93 (95)
||||+.||+++|+.+
T Consensus 77 ei~N~~eL~~~l~~~ 91 (628)
T TIGR03108 77 EIYNFQELVAELQAL 91 (628)
T ss_pred eECCHHHHHHHHHhc
Confidence 999999999999764
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
>PRK08525 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=3.7e-26 Score=167.60 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=74.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.. + .......++.+|+|||||++|++..+. .+.++|||+||+|+|
T Consensus 1 MCGI~G~~~~~-~-~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g 78 (445)
T PRK08525 1 MCAVVGVINSK-N-AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAG 78 (445)
T ss_pred CceEEEEEcCc-c-HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCC
Confidence 99999999863 2 223345678999999999999987431 145799999999999
Q ss_pred CC--CCCCcEEe--CCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKL--HRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~--~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.||+.+ .+ ++++|+|||+|||+.+||++|++++
T Consensus 79 ~~~~~naqP~~~~~~~-g~~~lvhNG~I~N~~eLr~~L~~~G 119 (445)
T PRK08525 79 NDSILDAQPVFARYDL-GEIAIVHNGNLVNKKEVRSRLIQDG 119 (445)
T ss_pred CCCCCCCCCeEeecCC-CCEEEEEEEEEECHHHHHHHHHhcC
Confidence 63 78999997 44 7899999999999999999998653
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type
Back Show alignment and domain information
Probab=99.93 E-value=7.2e-26 Score=152.63 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=73.8
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.. . .......++.+|+|||||+.|++..++ .+.++|||+||++.+.
T Consensus 1 CGI~G~~~~~-~-~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~ 78 (215)
T cd00714 1 CGIVGYIGKR-E-AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGE 78 (215)
T ss_pred CEEEEEEcCc-c-HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCC
Confidence 9999999852 2 233455678899999999999997632 1457899999999997
Q ss_pred --CCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 --LYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 --~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
..+.|||...+ ++++++|||+|||+.+||++|+++
T Consensus 79 ~~~~n~qPf~~~~-~~~~~vhNG~I~N~~~Lr~~L~~~ 115 (215)
T cd00714 79 PTDVNAHPHRSCD-GEIAVVHNGIIENYAELKEELEAK 115 (215)
T ss_pred CCccCCCCCCcCC-CCEEEEEeEEEcCHHHHHHHHHhc
Confidence 36899999876 789999999999999999999764
This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
>cd03766 Gn_AT_II_novel Gn_AT_II_novel
Back Show alignment and domain information
Probab=99.93 E-value=6e-26 Score=149.78 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=70.1
Q ss_pred CeeEEEEeCCCCCCc--ccHhhHHhhhccccCCCccceEEecCC-CeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEe
Q psy15141 1 MCGIWAIFGHETSNY--LTSCEHNFVKIQHRGPDAWRIEYDNHV-KKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICN 77 (95)
Q Consensus 1 McGI~g~~~~~~~~~--~~~~~~~~~~l~hRGpD~~g~~~~~~~-~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~N 77 (95)
||||+|+++...... ......|+.+|+|||||+++++..... +.+.|+|+||++++...+.||+.+.+ ++++|+||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~-~~~~lv~N 79 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS-TGNVLQWN 79 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC-CCEEEEEC
Confidence 999999997532210 122345678999999999999986421 35889999999999877899999876 78999999
Q ss_pred eeEcChHHHHH
Q psy15141 78 GEIYNFKRLGV 88 (95)
Q Consensus 78 GeIyN~~eL~~ 88 (95)
|||||+.+||+
T Consensus 80 GeIyN~~~l~~ 90 (181)
T cd03766 80 GELYNIDGVED 90 (181)
T ss_pred CEEECcccccC
Confidence 99999999874
This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
>PRK06388 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=7.6e-25 Score=161.54 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=74.8
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-----------------------CCeeEEEEEEeeeecC
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-----------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-----------------------~~~~~lgh~rl~i~~~ 57 (95)
||||+|+++.. ......+.++.+|+|||+|+.|++..+. .+++++||+||+|.|.
T Consensus 19 mCGI~G~~~~~--~~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~ 96 (474)
T PRK06388 19 DCAVVGFKGGI--NAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGS 96 (474)
T ss_pred CCeEEEEECCc--chHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCC
Confidence 99999999863 2334556679999999999999987432 2457999999999996
Q ss_pred C--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 58 L--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 58 ~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
. .+.||+... ..++++|||||+|||+++||++|++++
T Consensus 97 ~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G 136 (474)
T PRK06388 97 KGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEG 136 (474)
T ss_pred CCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCC
Confidence 4 789999743 227899999999999999999998764
>PRK07272 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=9.8e-25 Score=161.22 Aligned_cols=91 Identities=24% Similarity=0.411 Sum_probs=74.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~ 55 (95)
||||||+++.. + .......++.+|+|||||+.|++..+. .+++++||+||+|.
T Consensus 11 mCGI~Gi~~~~-~-~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~ 88 (484)
T PRK07272 11 ECGVFGIWGHP-D-AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATA 88 (484)
T ss_pred cCeEEEEECCc-c-HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecccc
Confidence 99999999862 2 233455678899999999999987531 14589999999999
Q ss_pred cCC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.. .+.||+... + ++++|+|||+|||+.+||++|++++
T Consensus 89 G~~~~~naqP~~~~~~~-g~ialvhNG~I~N~~eLr~~L~~~G 130 (484)
T PRK07272 89 GSASIENIQPFLFHFHD-MQFGLAHNGNLTNAVSLRKELEKQG 130 (484)
T ss_pred CCCCcCCCCCEEeecCC-CCEEEEEEEEEeCHHHHHHHHHhCC
Confidence 964 689999863 4 7899999999999999999998754
>PRK09123 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=1e-24 Score=161.04 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=74.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~ 55 (95)
||||||+++.. + .......++.+|+|||||+.|+...+. .++++|||+||+|.
T Consensus 21 mCGI~Gi~~~~-~-~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~ 98 (479)
T PRK09123 21 ECGVFGILGHP-D-AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTT 98 (479)
T ss_pred cCeEEEEEcCc-c-hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccC
Confidence 99999999863 2 233455678899999999999987431 14578999999999
Q ss_pred cCC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.. .+.|||.+. + ++++|+|||+|||+.+||++|++++
T Consensus 99 G~~~~~n~QP~~~~~~~-g~~alvhNG~I~N~~eLr~~L~~~G 140 (479)
T PRK09123 99 GETILRNVQPLFAELEF-GGLAIAHNGNLTNALTLRRELIRRG 140 (479)
T ss_pred CCCCcCCCCCceeecCC-CCEEEEEEEEEeCHHHHHHHHHhCC
Confidence 963 789999874 4 7899999999999999999998654
>PRK07349 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=1.4e-24 Score=160.85 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=74.3
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.+.+ .....+.++.+|+|||||+.|+...+. .++++|||+||+|+|
T Consensus 33 mCGI~Gi~~~~~~-~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G 111 (500)
T PRK07349 33 ACGVFGVYAPGEE-VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTG 111 (500)
T ss_pred CCeEEEEECCCcC-HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCC
Confidence 9999999985322 223345678999999999999977431 245799999999999
Q ss_pred CC--CCCCcEEeCC-CCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHR-YPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~-~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||.... .++++|+|||+|||+.+||++|++++
T Consensus 112 ~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G 152 (500)
T PRK07349 112 SSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARG 152 (500)
T ss_pred CCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCC
Confidence 74 6899998642 27799999999999999999998754
>PRK07631 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=1.4e-24 Score=160.04 Aligned_cols=91 Identities=25% Similarity=0.398 Sum_probs=73.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.. + .......++.+|+|||||+.|++..+. .+++++||+||+|.+
T Consensus 11 mCGI~Gi~~~~-~-~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G 88 (475)
T PRK07631 11 ECGVFGIWGHE-E-AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAG 88 (475)
T ss_pred CCcEEEEECCc-h-hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccC
Confidence 99999999852 2 223344678899999999999986321 256889999999999
Q ss_pred CC--CCCCcEE--eCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMK--LHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~--~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.||+. +.+ ++++|+|||+|||+++||++|++++
T Consensus 89 ~~~~~n~QP~~~~~~~-g~ialvhNG~I~N~~eLr~~L~~~G 129 (475)
T PRK07631 89 GGGYENVQPLLFRSQT-GSLALAHNGNLVNATQLKLQLENQG 129 (475)
T ss_pred CCCcCCcCCeEeEcCC-CCEEEEEEEEEECHHHHHHHHHhCC
Confidence 74 6899996 334 7899999999999999999998754
>PRK08341 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=2.3e-24 Score=157.94 Aligned_cols=91 Identities=24% Similarity=0.385 Sum_probs=75.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-----------------------CCeeEEEEEEeeeecC
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-----------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-----------------------~~~~~lgh~rl~i~~~ 57 (95)
||||||+++. + .......++.+|+|||+|+.|+...+. .+++++||+||+|+|.
T Consensus 4 ~CGI~G~~~~--~-~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~ 80 (442)
T PRK08341 4 KCGIFAAYSE--N-APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGS 80 (442)
T ss_pred ccEEEEEECC--C-cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCC
Confidence 8999999983 2 334566789999999999999976432 2578999999999998
Q ss_pred CCCCCcEEeCC-CCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 58 LYGMQPMKLHR-YPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 58 ~~~~QP~~~~~-~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
..+.||+...+ .++++|+|||+|||+.+||++|++++
T Consensus 81 ~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G 118 (442)
T PRK08341 81 LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRG 118 (442)
T ss_pred CcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcC
Confidence 78899998642 27899999999999999999998764
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Back Show alignment and domain information
Probab=99.91 E-value=2.1e-24 Score=162.86 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.. + .......++.+|+|||||+.|++.... .+.++|||+||++.|
T Consensus 1 MCGI~g~~~~~-~-~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at~g 78 (604)
T PRK00331 1 MCGIVGYVGQR-N-AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWATHG 78 (604)
T ss_pred CcEEEEEEcCc-c-HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCCCC
Confidence 99999999753 2 234456678899999999999987321 245789999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||.+.+ ++++++|||+|||+++||++|.+++
T Consensus 79 ~~~~~n~qP~~~~~-~~~~~vhNG~I~N~~~Lr~~l~~~g 117 (604)
T PRK00331 79 KPTERNAHPHTDCS-GRIAVVHNGIIENYAELKEELLAKG 117 (604)
T ss_pred CCccccCCccccCC-CCEEEEEeEEEcCHHHHHHHHHhCC
Confidence 63 6899999766 7899999999999999999998653
>PRK09246 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=2.9e-24 Score=159.52 Aligned_cols=91 Identities=29% Similarity=0.337 Sum_probs=73.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.+ + .......++.+|+|||||+.|++..+. .+.++|||+||+|.|
T Consensus 1 MCGI~Gi~~~~-~-~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G 78 (501)
T PRK09246 1 MCGIVGIVGHS-P-VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAG 78 (501)
T ss_pred CceEEEEEcCc-C-HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCcCC
Confidence 99999999862 2 223445678899999999999987421 257899999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.+ .+.|||..+...+++|+|||+|||+++||++|+++
T Consensus 79 ~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~ 117 (501)
T PRK09246 79 SSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEK 117 (501)
T ss_pred CCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhc
Confidence 74 79999985322569999999999999999999875
>PRK06781 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=5e-24 Score=157.17 Aligned_cols=91 Identities=25% Similarity=0.423 Sum_probs=73.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.. + .......++.+|+|||||+.|++..+. .+++++||+|++|.+
T Consensus 11 mCGI~Gi~~~~-~-~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G 88 (471)
T PRK06781 11 ECGVFGIWGHE-N-AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAG 88 (471)
T ss_pred cCeEEEEEcCc-c-HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCC
Confidence 99999999863 2 223344678899999999999985321 245789999999999
Q ss_pred CC--CCCCcEEe--CCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKL--HRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~--~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||.. .+ ++++|+|||+|||+++||++|++++
T Consensus 89 ~~~~~naqP~~~~~~~-g~~alvhNG~I~N~~eLr~~L~~~G 129 (471)
T PRK06781 89 GSEVANVQPLLFRFSD-HSMALAHNGNLINAKMLRRELEAEG 129 (471)
T ss_pred CCCcCCCCCeEEecCC-CCEEEEEEEEEcCHHHHHHHHHhCC
Confidence 74 78999964 34 7899999999999999999998754
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type
Back Show alignment and domain information
Probab=99.91 E-value=9.3e-24 Score=142.41 Aligned_cols=88 Identities=35% Similarity=0.583 Sum_probs=73.9
Q ss_pred eeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeE
Q psy15141 2 CGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEI 80 (95)
Q Consensus 2 cGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeI 80 (95)
|||+|+++.+.... ......|+.+|+|||||+.+++..+ .++|+|+||++.+...+.||+...+ ++++++|||||
T Consensus 1 cGI~g~~~~~~~~~~~~~~~~~~~~l~hRGpd~~~~~~~~---~~~lgh~rl~~~~~~~~~qP~~~~~-~~~~~~~nG~i 76 (220)
T cd00712 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWIDE---GVALGHRRLSIIDLSGGAQPMVSED-GRLVLVFNGEI 76 (220)
T ss_pred CeEEEEEeCCCCcchHHHHHHHHHHHhccCCCCCCEEEEC---CEEEEEEeeeecCcccCCCCeEeCC-CCEEEEEEEEE
Confidence 99999997532111 2234457889999999999999875 6899999999999878899999887 78999999999
Q ss_pred cChHHHHHHHHhc
Q psy15141 81 YNFKRLGVQVRSQ 93 (95)
Q Consensus 81 yN~~eL~~~L~~~ 93 (95)
||+.+|+++|..+
T Consensus 77 ~N~~~L~~~l~~~ 89 (220)
T cd00712 77 YNYRELRAELEAL 89 (220)
T ss_pred eCHHHHHHHHHhc
Confidence 9999999998654
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=2.9e-24 Score=163.14 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------------CCeeEEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------------VKKTYVGF 49 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------------~~~~~lgh 49 (95)
||||+|+++.. ........++.+|+|||||++|+....+ .+.+++||
T Consensus 24 MCGI~G~~~~~--~~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH 101 (640)
T PTZ00295 24 CCGIVGYLGNE--DASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAH 101 (640)
T ss_pred CCeEEEEEcCc--chHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEE
Confidence 99999999853 2334556678999999999999988421 13468999
Q ss_pred EEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 50 HRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 50 ~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+||+|+|.. .+.|||.+.+ ++++++|||+|||+.+||++|++++
T Consensus 102 ~R~at~g~~~~~n~qP~~~~~-~~~~~vhNG~I~N~~~Lr~~L~~~g 147 (640)
T PTZ00295 102 TRWATHGGKTDENAHPHCDYK-KRIALVHNGTIENYVELKSELIAKG 147 (640)
T ss_pred eccccCCCCCcCCCCCCCCCC-CCEEEEEEEEEcCHHHHHHHHHHCC
Confidence 999999963 7899999766 7899999999999999999998754
>PRK07847 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=4.5e-24 Score=158.45 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=74.1
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++...+ .....+.++.+|+|||||+.|+.+.+. .++++|||+||+|.+
T Consensus 23 mCGI~Gi~~~~~~-~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G 101 (510)
T PRK07847 23 ECGVFGVWAPGEE-VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTG 101 (510)
T ss_pred cCeEEEEECCCcC-HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCC
Confidence 9999999986322 222345678999999999999877432 145789999999999
Q ss_pred CC--CCCCcEEeC---CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLH---RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~---~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||... . ++++|+|||+|||+.+||++|++++
T Consensus 102 ~~~~~naQP~~~~~~~~-g~ialvHNG~I~N~~eLr~~L~~~G 143 (510)
T PRK07847 102 ASTWENAQPTFRATAAG-GGVALGHNGNLVNTAELAARARDRG 143 (510)
T ss_pred CCcccCCCCcCcccCCC-CCEEEEEEEEEeCHHHHHHHHHhcC
Confidence 75 689999863 3 7899999999999999999998754
>PRK05793 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.90 E-value=1.2e-23 Score=155.20 Aligned_cols=93 Identities=16% Similarity=0.307 Sum_probs=74.1
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.+........+.++.+|+|||||+.|++..+. .+.++|||+|++|.+
T Consensus 14 mCGI~Gi~~~~~~~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G 93 (469)
T PRK05793 14 ECGVFGVFSKNNIDVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTG 93 (469)
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCC
Confidence 99999999863211122345578899999999999986431 246789999999999
Q ss_pred CC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||... + ++++|+|||+|||+.+||++|++++
T Consensus 94 ~~~~~n~qPf~~~~~~-g~~alvhNG~I~N~~eLr~~L~~~g 134 (469)
T PRK05793 94 ASDLDNAQPLVANYKL-GSIAIAHNGNLVNADVIRELLEDGG 134 (469)
T ss_pred CCCCCCCCCeEeecCC-CCEEEEEEEEEeCHHHHHHHHHhcC
Confidence 74 689999874 4 7899999999999999999998653
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Probab=99.90 E-value=9.9e-24 Score=155.20 Aligned_cols=86 Identities=33% Similarity=0.460 Sum_probs=70.9
Q ss_pred EEEEeCCCCCCccc--HhhHHhhhccccCCCccceE-EecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeE
Q psy15141 4 IWAIFGHETSNYLT--SCEHNFVKIQHRGPDAWRIE-YDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEI 80 (95)
Q Consensus 4 I~g~~~~~~~~~~~--~~~~~~~~l~hRGpD~~g~~-~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeI 80 (95)
|+|++..+...... ....|+.+|+|||||++++| ..+ +++|||+||+|+|++.+.||+.+.+ ++++|||||||
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~---~~~lgh~rl~i~d~~~~~qP~~~~~-~~~~lv~nGei 76 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDG---NAILGHRRLAIIDLSGGAQPMSNEG-KTYVIVFNGEI 76 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccC---CEEEEEEEeEEeCCCCCCCeeECCC-CCEEEEEeeEE
Confidence 67888764332211 23446779999999999999 654 7899999999999977799999987 88999999999
Q ss_pred cChHHHHHHHHhc
Q psy15141 81 YNFKRLGVQVRSQ 93 (95)
Q Consensus 81 yN~~eL~~~L~~~ 93 (95)
||+.||+++|..+
T Consensus 77 yN~~eL~~~l~~~ 89 (467)
T TIGR01536 77 YNHEELREELEAK 89 (467)
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999764
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Back Show alignment and domain information
Probab=99.90 E-value=2.2e-23 Score=159.28 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=74.4
Q ss_pred CeeEEEEeCCC----CCCcccHhhHHhhhccccCCCccceEEecC-----------------------------------
Q psy15141 1 MCGIWAIFGHE----TSNYLTSCEHNFVKIQHRGPDAWRIEYDNH----------------------------------- 41 (95)
Q Consensus 1 McGI~g~~~~~----~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~----------------------------------- 41 (95)
||||||+++.. ........+..+.+|+|||+|+.|++..++
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 99999999853 112223445578999999999999987432
Q ss_pred ----CCeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 42 ----VKKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 42 ----~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.+++++||+||+|.|.. .+.||+.....+.++|||||+|||+.+||++|++++
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G 139 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHG 139 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCC
Confidence 13478999999999963 688999864326799999999999999999998764
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type
Back Show alignment and domain information
Probab=99.89 E-value=3.5e-23 Score=142.31 Aligned_cols=90 Identities=20% Similarity=0.357 Sum_probs=72.3
Q ss_pred eeEEEEeCCCC-CCcccHhhHHhhhccccCC-CccceEEecC---------------------------------CCeeE
Q psy15141 2 CGIWAIFGHET-SNYLTSCEHNFVKIQHRGP-DAWRIEYDNH---------------------------------VKKTY 46 (95)
Q Consensus 2 cGI~g~~~~~~-~~~~~~~~~~~~~l~hRGp-D~~g~~~~~~---------------------------------~~~~~ 46 (95)
|||+|+++... .........++.+|+|||| |+.|++.... .+.++
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~ 80 (249)
T cd01907 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHW 80 (249)
T ss_pred CcEEEEEecCCccccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEE
Confidence 99999998631 1123345667899999999 9999988521 14678
Q ss_pred EEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 47 VGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 47 lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
|||+|+++.+.. .+.|||.. ++++++|||+|||+.+||++|++++
T Consensus 81 igH~R~aT~g~~~~~n~qP~~~---~~~~lvhNG~I~N~~~lr~~L~~~g 127 (249)
T cd01907 81 IAHTRQPTNSAVWWYGAHPFSI---GDIAVVHNGEISNYGSNREYLERFG 127 (249)
T ss_pred EEEEeccCCCCCCccCCCCeec---CCEEEEeCCeecCHHHHHHHHHhcC
Confidence 999999999853 68999987 4699999999999999999997653
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
Back Show alignment and domain information
Probab=99.89 E-value=2.9e-23 Score=156.75 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=73.4
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.. + .......++.+|+|||||++|++..+. .+.++|||+||+|.|.
T Consensus 1 CGI~g~~~~~-~-~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~ 78 (607)
T TIGR01135 1 CGIVGYIGQR-D-AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGK 78 (607)
T ss_pred CeEEEEECCc-c-HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCC
Confidence 9999999752 2 223456678899999999999987421 2357899999999996
Q ss_pred C--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 L--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 ~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
. .+.|||...+ ++++++|||+|||+++||++|.++
T Consensus 79 ~~~~n~qP~~~~~-~~~~~vhNG~I~N~~~Lr~~L~~~ 115 (607)
T TIGR01135 79 PTEENAHPHTDEG-GRIAVVHNGIIENYAELREELEAR 115 (607)
T ss_pred CCccCCCCcCcCC-CCEEEEEecccCCHHHHHHHHHhC
Confidence 3 6899999876 789999999999999999999864
The member from Methanococcus jannaschii contains an intein.
>PLN02440 amidophosphoribosyltransferase
Back Show alignment and domain information
Probab=99.89 E-value=5.3e-23 Score=152.12 Aligned_cols=91 Identities=22% Similarity=0.409 Sum_probs=73.4
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.. + .......++.+|+|||||+.|++..+. .+.++|||+|+++.+
T Consensus 1 MCGI~Gi~~~~-~-~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G 78 (479)
T PLN02440 1 ECGVVGIFGDP-E-ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAG 78 (479)
T ss_pred CceEEEEECCc-c-HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccC
Confidence 99999999752 2 233455678899999999999986321 246789999999999
Q ss_pred CC--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 57 SL--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 57 ~~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.. .+.|||... ..++++|+|||+|||+.+||++|+.+
T Consensus 79 ~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~ 118 (479)
T PLN02440 79 ASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEEN 118 (479)
T ss_pred CCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhc
Confidence 63 799999863 12679999999999999999999865
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=4.6e-23 Score=157.28 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=75.1
Q ss_pred CeeEEEEeCCCC----CCcccHhhHHhhhccccCCCccceEEe-c---------------C-------------------
Q psy15141 1 MCGIWAIFGHET----SNYLTSCEHNFVKIQHRGPDAWRIEYD-N---------------H------------------- 41 (95)
Q Consensus 1 McGI~g~~~~~~----~~~~~~~~~~~~~l~hRGpD~~g~~~~-~---------------~------------------- 41 (95)
||||||+++... .......+..+.+|+|||.|+.|+... + .
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999998631 112234455789999999999999886 1 1
Q ss_pred ---------------CCeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 42 ---------------VKKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 42 ---------------~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.++++|||+||+|+|.. .+.||+.+.+ ++++|||||+||||.+||++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~-~~i~vvhNG~I~N~~eLr~~L~~~g 149 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNN-GEFTIVHNGIVTNYMTLKELLKEEG 149 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCC-CCEEEEECeeEecHHHHHHHHHHcC
Confidence 12478999999999973 6889999876 8899999999999999999998764
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type
Back Show alignment and domain information
Probab=99.88 E-value=6.4e-22 Score=136.04 Aligned_cols=90 Identities=23% Similarity=0.387 Sum_probs=72.3
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.. + .......++.+|+|||||+.|++..+. .+.++|||+|+++.+.
T Consensus 1 Cgi~g~~~~~-~-~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~ 78 (252)
T cd00715 1 CGVFGIYGAE-D-AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGS 78 (252)
T ss_pred CEEEEEECCc-c-hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCC
Confidence 9999999863 2 234455678999999999999986532 1346899999999997
Q ss_pred C--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 L--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 ~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
. .+.|||... .+++++++|||+|||+.+||++|..+
T Consensus 79 ~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~ 117 (252)
T cd00715 79 SSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEE 117 (252)
T ss_pred CCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHC
Confidence 4 689999863 12679999999999999999999754
This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
>TIGR01134 purF amidophosphoribosyltransferase
Back Show alignment and domain information
Probab=99.86 E-value=4.1e-21 Score=140.97 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=71.8
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||||+++.. +........++.+|+|||||+.|++..+. .++++|||+|+++.+.
T Consensus 1 CGI~Gi~~~~-~~~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~ 79 (442)
T TIGR01134 1 CGVVGIYSQE-EDAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGS 79 (442)
T ss_pred CEEEEEEcCC-ccHHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCC
Confidence 9999999863 11223345678899999999999986431 2468899999999997
Q ss_pred C--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 L--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 ~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
. .+.|||..+..++++++|||+|||+.+||++|+.+
T Consensus 80 ~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~ 117 (442)
T TIGR01134 80 SSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEE 117 (442)
T ss_pred CCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhc
Confidence 3 68999985321559999999999999999999764
Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
>KOG0571|consensus
Back Show alignment and domain information
Probab=99.83 E-value=9.3e-21 Score=137.09 Aligned_cols=87 Identities=38% Similarity=0.581 Sum_probs=72.2
Q ss_pred CeeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeee
Q psy15141 1 MCGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 1 McGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGe 79 (95)
||||++++..+.... ..+.....+++.|||||-++.+...+ ..|+|.||+|+|+..+.||++..+ +.+++..|||
T Consensus 1 MCGI~Av~~~~~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~---~~l~heRLAIvdp~sg~QPi~~~~-~~~~~~vNGE 76 (543)
T KOG0571|consen 1 MCGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRND---NILGHERLAIVDPTSGAQPIVGED-GTYVVTVNGE 76 (543)
T ss_pred CCceeeeecccchhhcChhhhhHHHhhcCCCCCcchhheecc---ccccccceeEecCCcCCcccccCC-CcEEEEECce
Confidence 999999998431111 22344557799999999999988763 379999999999988999999988 8888889999
Q ss_pred EcChHHHHHHHH
Q psy15141 80 IYNFKRLGVQVR 91 (95)
Q Consensus 80 IyN~~eL~~~L~ 91 (95)
||||++||+.++
T Consensus 77 IYNH~~Lr~~~~ 88 (543)
T KOG0571|consen 77 IYNHKKLREHCK 88 (543)
T ss_pred eccHHHHHHHhh
Confidence 999999999876
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=99.83 E-value=4e-20 Score=134.46 Aligned_cols=94 Identities=24% Similarity=0.396 Sum_probs=75.9
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecCC-------------------------CeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNHV-------------------------KKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~~-------------------------~~~~lgh~rl~i~ 55 (95)
||||||+++.+..+.....+.++.+|||||+|+.|+...+.. +.+++||+|+++.
T Consensus 4 ~CGV~Gi~~~~~~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTa 83 (470)
T COG0034 4 MCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTA 83 (470)
T ss_pred cceEEEEecCCccchHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCC
Confidence 999999998743212334566799999999999999776531 2458999999999
Q ss_pred cCC--CCCCcEEeCCC-CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLHRY-PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~~~-~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
|.+ .+.|||..+.. +.++|+|||.|-|..+||++|++++
T Consensus 84 G~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g 125 (470)
T COG0034 84 GSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEG 125 (470)
T ss_pred CCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcC
Confidence 964 78899987641 5699999999999999999998765
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.82 E-value=2e-20 Score=140.16 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=74.8
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.+.+ ........+++|.+||.|+.|+.+.++ .+.+++||+||+++|
T Consensus 1 MCGIvG~i~~~~~-~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG 79 (597)
T COG0449 1 MCGIVGYIGFLRE-AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHG 79 (597)
T ss_pred CCcEEEEEcCCcc-HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccCCC
Confidence 9999999975322 233455679999999999999987642 157899999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+++|..+ +++++||||-|-||.+||++|+++|
T Consensus 80 ~P~~~NAHPh~~---~~~avVHNGIIeN~~eLr~eL~~~G 116 (597)
T COG0449 80 GPTRANAHPHSD---GEFAVVHNGIIENFAELKEELEAKG 116 (597)
T ss_pred CCCcCCCCCCCC---CCEEEEeCchhhCHHHHHHHHHhcC
Confidence 64 78999976 6799999999999999999999875
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)
Back Show alignment and domain information
Probab=99.80 E-value=6e-19 Score=117.65 Aligned_cols=90 Identities=28% Similarity=0.493 Sum_probs=72.0
Q ss_pred eeEEEEeCCCCCCcccHhh---HHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeee
Q psy15141 2 CGIWAIFGHETSNYLTSCE---HNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEI 54 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~---~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i 54 (95)
|||+|+++.+... ..... .++..++|||||+.|++..+. .+.++|+|+|+++
T Consensus 1 Cgi~g~~~~~~~~-~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at 79 (220)
T cd00352 1 CGIFGIVGADGAA-SLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLAT 79 (220)
T ss_pred CEEEEEECCCCcc-hhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeee
Confidence 9999999874322 22222 367799999999999988642 1257899999999
Q ss_pred ecC--CCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 55 VDS--LYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 55 ~~~--~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.+. ..+.|||.... ++++++|||+|||+.+|+++|..+
T Consensus 80 ~g~~~~~n~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~ 119 (220)
T cd00352 80 NGLPSEANAQPFRSED-GRIALVHNGEIYNYRELREELEAR 119 (220)
T ss_pred cCCCCCCCCCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHC
Confidence 986 37899999876 689999999999999999998754
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
>KOG0572|consensus
Back Show alignment and domain information
Probab=99.75 E-value=4e-18 Score=122.02 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=73.1
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~ 55 (95)
||||+|++..+.-..........-+|||||+|+.|+...+. .+.+++||+|+++.
T Consensus 1 eCGv~Gi~~a~~~~~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTa 80 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTA 80 (474)
T ss_pred CCcEEEEEecCccccCcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccc
Confidence 99999999863221112222223599999999999988752 25789999999999
Q ss_pred cCC--CCCCcEEeCCC-CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLHRY-PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~~~-~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.+ .+.|||+-... +.++|+||||+-|+++||++|..++
T Consensus 81 G~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g 122 (474)
T KOG0572|consen 81 GSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEG 122 (474)
T ss_pred cccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcC
Confidence 986 78899987632 6699999999999999999997654
>KOG1268|consensus
Back Show alignment and domain information
Probab=99.75 E-value=6.1e-18 Score=124.84 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=76.7
Q ss_pred CeeEEEEeCCCCCCcccHh----hHHhhhccccCCCccceEEecC--------------------------------CCe
Q psy15141 1 MCGIWAIFGHETSNYLTSC----EHNFVKIQHRGPDAWRIEYDNH--------------------------------VKK 44 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~----~~~~~~l~hRGpD~~g~~~~~~--------------------------------~~~ 44 (95)
|||||++.++-...+..++ +..+++|.+||.|+.|+..++. ..+
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 9999999987433233333 2347899999999999988752 146
Q ss_pred eEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 45 TYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 45 ~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
++++|+||++.|.. .+.+|+.+++++.+++||||-|-||++||..|++++
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG 132 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKG 132 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcC
Confidence 88999999999963 788999987657899999999999999999999775
>PF13522 GATase_6: Glutamine amidotransferase domain
Back Show alignment and domain information
Probab=99.54 E-value=8.9e-15 Score=92.23 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=48.5
Q ss_pred CCccce--EEecCCCeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHh
Q psy15141 31 PDAWRI--EYDNHVKKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRS 92 (95)
Q Consensus 31 pD~~g~--~~~~~~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~ 92 (95)
||..++ +..+ .++|+|+|+++++.. .+.|||.+.+ ++++++|||+|+|+.+||++|..
T Consensus 1 pd~~~~~~~~~~---~~~lgH~R~AT~G~~~~~~~hPf~~~~-g~~~~~HNG~i~n~~~L~~~l~~ 62 (133)
T PF13522_consen 1 PDFEGLASWLDG---EAALGHTRYATVGSPTEENNHPFSNRD-GRIALAHNGNIDNYKELREELGE 62 (133)
T ss_pred CChHHHHHhcCC---CEEEEEeecCCCCCCCCcCCCCCcCCC-CCEEEEECCeecCHHHHHHHHHH
Confidence 677777 5543 689999999999974 5569995555 78999999999999999999986
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A
Back Show alignment and domain information
Probab=99.36 E-value=2.2e-13 Score=84.86 Aligned_cols=44 Identities=34% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEeeeecCCCCCCcEE-eCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 49 FHRLEIVDSLYGMQPMK-LHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 49 h~rl~i~~~~~~~QP~~-~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
|+||+|.+...+.||++ +.+ ++++++|||||||++||+++|..+
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~-~~~~l~~nG~i~N~~eL~~~l~~~ 45 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSED-GELVLVFNGEIYNREELRRELEER 45 (125)
T ss_dssp -------------------------EEEEEEEES-HHHHHHTSSSS
T ss_pred Ccccccccccccccccccccc-cCEEEEEEEEEEChHHHHHHhhhc
Confidence 89999977778999999 565 789999999999999999998654
>TIGR03442 conserved hypothetical protein TIGR03442
Back Show alignment and domain information
Probab=99.30 E-value=3.5e-12 Score=88.03 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=59.8
Q ss_pred CeeEEEEeCCCCCCcccHhh-HHhhhccccCC------------CccceEEec-C-------------------------
Q psy15141 1 MCGIWAIFGHETSNYLTSCE-HNFVKIQHRGP------------DAWRIEYDN-H------------------------- 41 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~-~~~~~l~hRGp------------D~~g~~~~~-~------------------------- 41 (95)
||+|+|+++.. ......+ ....+|.+|+- |+.|+.... .
T Consensus 1 MCr~~gy~g~~--~~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~~ 78 (251)
T TIGR03442 1 MCRHLAYLGAP--VSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLAR 78 (251)
T ss_pred CceEeeecCCC--eeHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHHh
Confidence 99999999863 1222222 22345555443 888885532 1
Q ss_pred --CCeeEEEEEEeeeecC--C-CCCCcEEeCCCCcEEEEEeeeEcChH-----HHHHHHH
Q psy15141 42 --VKKTYVGFHRLEIVDS--L-YGMQPMKLHRYPRVTLICNGEIYNFK-----RLGVQVR 91 (95)
Q Consensus 42 --~~~~~lgh~rl~i~~~--~-~~~QP~~~~~~~~~~lv~NGeIyN~~-----eL~~~L~ 91 (95)
...++|+|.|+++.+. . .+.|||.. ++++++|||.|-|++ +|+++|.
T Consensus 79 ~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~---g~~~~aHNG~i~n~~~~~r~~L~~~l~ 135 (251)
T TIGR03442 79 YVESGCVLAAVRSATVGMAIDESACAPFSD---GRWLFSHNGFVDNFRQTLYRPLRDRLP 135 (251)
T ss_pred hcccceEEEEeeeCCCCCCcchhcCCCCCc---CCEEEEeCCccCCchhhhhHHHHhcCC
Confidence 1356899999999983 3 68999995 679999999999998 4555554
Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type
Back Show alignment and domain information
Probab=99.14 E-value=8.6e-11 Score=81.09 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+.++|+|+|+++.+.. .+.|||.. ++++++|||.|+|+.+|+..|..+
T Consensus 80 ~~~~l~H~R~At~G~~~~~n~hPf~~---~~~~~~HNG~i~n~~~l~~~l~~~ 129 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR---GRWLFAHNGQLDGFRLLRRRLLRL 129 (257)
T ss_pred ccEEEEEEecCCCCCCccccCCCccc---CCEEEEeCCccCCcchhhHHHHhc
Confidence 4578999999999952 78999987 469999999999999999998764
YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
>KOG0573|consensus
Back Show alignment and domain information
Probab=99.13 E-value=1.3e-10 Score=85.10 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=56.8
Q ss_pred CeeEEEEeCCCCCCcccHhhH-HhhhccccCCCccceEEecCC-CeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEH-NFVKIQHRGPDAWRIEYDNHV-KKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~-~~~~l~hRGpD~~g~~~~~~~-~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+..+.++.+.....+.. +...+..||||.++....+.. ..+.+.-..|++.+ ....||++.++ ++++.|||
T Consensus 1 MCGI~~s~~~~~~l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d~--~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVEDD--RYVFLFNG 77 (520)
T ss_pred CceEEEeecCCccccccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceeccc--ceEEEecc
Confidence 999999998754422222222 344889999999876654422 23456667888888 35789998764 59999999
Q ss_pred eEcCh
Q psy15141 79 EIYNF 83 (95)
Q Consensus 79 eIyN~ 83 (95)
||||.
T Consensus 78 eIyn~ 82 (520)
T KOG0573|consen 78 EIYNG 82 (520)
T ss_pred eeccC
Confidence 99975
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group
Back Show alignment and domain information
Probab=99.09 E-value=6.4e-10 Score=80.34 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=39.0
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.++|+|+|++|.+.. ..+|||. +|+|||||-|...++..|.++.
T Consensus 195 s~~~i~H~RysTnt~p~w~~AqPf~-------~laHNGeInt~~~n~~~l~~r~ 241 (361)
T PF00310_consen 195 SHFAIGHQRYSTNTFPSWENAQPFR-------ALAHNGEINTIRGNRNWLEARG 241 (361)
T ss_dssp BSEEEEEEEE-SSSSCSGGGSSSEE-------EEEEEEEETTHHHHHHHHHHHC
T ss_pred ceEEEEEEecCCCCCCcchhcChHH-------HhhhccccccHHHHHHHHHhhc
Confidence 4688999999999865 7899996 7999999999999999998764
This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D
Back Show alignment and domain information
Probab=98.46 E-value=3.1e-07 Score=64.13 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=30.6
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhcc------ccCCCccceEEecCC--------------------------CeeEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQ------HRGPDAWRIEYDNHV--------------------------KKTYVG 48 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~------hRGpD~~g~~~~~~~--------------------------~~~~lg 48 (95)
||=++|+-... .. .....+..++ .+=||+.|+....+. ....|+
T Consensus 1 MC~Llg~s~~~-p~---~~~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~la 76 (271)
T PF13230_consen 1 MCRLLGMSSNR-PT---DINFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLFLA 76 (271)
T ss_dssp ---------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEEEE
T ss_pred Ccccccccccc-cc---ccccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEEEE
Confidence 99999997642 11 1111222222 233899988654321 245789
Q ss_pred EEEeeeecCC--CCCCcEEeCC-CCcEEEEEeeeEcChHHHH
Q psy15141 49 FHRLEIVDSL--YGMQPMKLHR-YPRVTLICNGEIYNFKRLG 87 (95)
Q Consensus 49 h~rl~i~~~~--~~~QP~~~~~-~~~~~lv~NGeIyN~~eL~ 87 (95)
|.|.++.+.- .+.|||.... .++++++|||.|++++.++
T Consensus 77 HvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~ 118 (271)
T PF13230_consen 77 HVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDIL 118 (271)
T ss_dssp EE------------SS-EE----ETTEEEEEEEEETTGGGGH
T ss_pred EecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccC
Confidence 9999999853 6889999641 1569999999999988766
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type
Back Show alignment and domain information
Probab=98.44 E-value=4e-07 Score=61.13 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 61 MQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 61 ~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.|++.. ++++++|||||||+.|||++|...
T Consensus 44 ~~~~~~---~~~~iv~NGEIYN~~eLr~~L~~~ 73 (199)
T cd01909 44 VQVARS---ETGTAYLIGELYNRDELRSLLGAG 73 (199)
T ss_pred eeEeeC---CCEEEEEEEEEeCHHHHHHHHHhc
Confidence 466654 569999999999999999999654
Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type
Back Show alignment and domain information
Probab=98.37 E-value=5.3e-07 Score=66.25 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=38.0
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+.++|+|+|+||.... ..+|||. +|+|||||+|+..+|..++++
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPfr-------~laHNGEInT~~gnr~~m~ar 246 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPFR-------YLAHNGEINTIRGNRNWMRAR 246 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcce-------eEEEcccccCHHHHHHHHHHh
Confidence 4678999999998754 6889995 489999999999999998765
GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum
Back Show alignment and domain information
Probab=97.98 E-value=1e-05 Score=55.23 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.5
Q ss_pred EEeCCCCcEEEEEeeeEcChHHHHHHH
Q psy15141 64 MKLHRYPRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 64 ~~~~~~~~~~lv~NGeIyN~~eL~~~L 90 (95)
+.+.+ ++++++|||||||+.+||++|
T Consensus 66 l~~~~-~~~~~vfnGeIyN~~eLr~~l 91 (224)
T cd01910 66 LFAVK-DDIFCLFQGHLDNLGSLKQQY 91 (224)
T ss_pred EECCC-CCEEEEEEeEEcCHHHHHHHh
Confidence 55555 779999999999999999988
Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Back Show alignment and domain information
Probab=97.94 E-value=3.3e-05 Score=53.64 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=54.7
Q ss_pred CeeEEEEeCCCCCCcccHhh--HHhhhcc---ccCCCccceEEecC-------------------------CCeeEEEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCE--HNFVKIQ---HRGPDAWRIEYDNH-------------------------VKKTYVGFH 50 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~--~~~~~l~---hRGpD~~g~~~~~~-------------------------~~~~~lgh~ 50 (95)
||=++|+.+.. + ..... ....+.. -.=+|+.|+...+. .+...|+|.
T Consensus 1 MCrlLg~~g~~--p-~~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHv 77 (252)
T COG0121 1 MCRLLGMHGNP--P-TDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHV 77 (252)
T ss_pred CceeeeecCCC--c-chhhhhhccchhhccCCCCCCCcceEEEEcCCccEEEeCCCccccchhhhhcccccCccEEEEEE
Confidence 99999998853 1 11111 1111111 12278888865442 135779999
Q ss_pred EeeeecC-C-CCCCcEEeCCC-CcEEEEEeeeEcChHH
Q psy15141 51 RLEIVDS-L-YGMQPMKLHRY-PRVTLICNGEIYNFKR 85 (95)
Q Consensus 51 rl~i~~~-~-~~~QP~~~~~~-~~~~lv~NGeIyN~~e 85 (95)
|.++.+. + .+.+||..... ..+.++|||.|-+++.
T Consensus 78 R~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~ 115 (252)
T COG0121 78 RKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKL 115 (252)
T ss_pred eccCCCcccccCCCCccccCCccceEEEecCcccCccc
Confidence 9999994 2 78899998631 4468999999999987
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=97.49 E-value=0.00013 Score=53.10 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=37.5
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.++|+|+|.||--.. ..+|||.. +||||||-++.-.++.|++++
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPfr~-------lvHNGEInT~~gN~nwm~ar~ 248 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPFRL-------LVHNGEINTYGGNRNWLEARG 248 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCccee-------eeecceecccccHHHHHHHhh
Confidence 4678999999987543 68899964 599999999999999988765
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=97.11 E-value=0.00044 Score=50.43 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=28.8
Q ss_pred CeeEEEEeCCCCCCccc---HhhHHhhhccccC-CCccceEEec
Q psy15141 1 MCGIWAIFGHETSNYLT---SCEHNFVKIQHRG-PDAWRIEYDN 40 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~---~~~~~~~~l~hRG-pD~~g~~~~~ 40 (95)
||||.++.+.++.++.. ..+.++.+|.||| +++.+..-++
T Consensus 12 aCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gdG 55 (371)
T COG0067 12 ACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDG 55 (371)
T ss_pred cCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcccccC
Confidence 89999999986543322 3455788999999 8877765443
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Back Show alignment and domain information
Probab=93.09 E-value=0.11 Score=43.95 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=32.7
Q ss_pred eeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 44 KTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 44 ~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.++|.|+|+||--.. ..+|||. .|+|||||--..--+..++++
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR-------~laHNGEINTi~gN~nwm~ar 257 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR-------YLAHNGEINTITGNRQWARAR 257 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce-------eeeeccccccHHHHHHHHHHH
Confidence 578999999987543 6789985 479999998776666666544
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Back Show alignment and domain information
Probab=82.96 E-value=1 Score=29.37 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.2
Q ss_pred CcEEEEEeeeEcChHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGV 88 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~ 88 (95)
.++.|||||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999988754
>TIGR03823 FliZ flagellar regulatory protein FliZ
Back Show alignment and domain information
Probab=82.89 E-value=1 Score=29.35 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.2
Q ss_pred CcEEEEEeeeEcChHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGV 88 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~ 88 (95)
.++.|||||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999988754
FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 95
d1q15a2 204
d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectob
2e-08 d1jgta2 206
d.153.1.1 (A:4-209) beta-Lactam synthetase {Strept
9e-07 d1ct9a2 192
d.153.1.1 (A:1-192) Asparagine synthetase B, N-ter
0.003
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 204
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]
Score = 47.3 bits (112), Expect = 2e-08
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 26 IQHRGPDAWRIEYDNHVKKTY-VGFHRLEIVD-SLYGMQPMKLHRYPRVTLICNGEIYNF 83
+ ++G D N++++ + L + + R T G +YN
Sbjct: 6 VVYKGSD----TDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNR 61
Query: 84 KRL 86
L
Sbjct: 62 TFL 64
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Length = 206
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]
Score = 42.8 bits (100), Expect = 9e-07
Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 7/59 (11%)
Query: 28 HRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
H D + H + + T + GEIYN L
Sbjct: 31 HTDIDTPQ----GERSLAATLVHAPSVAPDRAVARS---LTGAPTTAVLAGEIYNRDEL 82
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 192
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]
Score = 33.0 bits (74), Expect = 0.003
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 25 KIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNF 83
++HRGPD I ++ + RL IVD ++ L NGEIYN
Sbjct: 26 LMRHRGPDWSGIYASDNA---ILAHERLSIVDV-NAGAQPLYNQQKTHVLAVNGEIYNH 80
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 95
d1ct9a2 192
Asparagine synthetase B, N-terminal domain {Escher
99.92 d1xffa_ 238
Glucosamine 6-phosphate synthase, N-terminal domai
99.92 d1gph12 234
Glutamine PRPP amidotransferase, N-terminal domain
99.91 d1ecfa2 249
Glutamine PRPP amidotransferase, N-terminal domain
99.91 d1q15a2 204
beta-Lactam synthetase {Pectobacterium carotovorum
99.61 d1jgta2 206
beta-Lactam synthetase {Streptomyces clavuligerus
99.49 d1te5a_ 253
Hypothetical protein YafJ (PA1307) {Pseudomonas ae
99.37 d1ofda3 430
Alpha subunit of glutamate synthase, N-terminal do
97.55 d1ea0a3 422
Alpha subunit of glutamate synthase, N-terminal do
95.53 d1ea0a3 422
Alpha subunit of glutamate synthase, N-terminal do
88.29
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.6e-25 Score=146.24 Aligned_cols=87 Identities=29% Similarity=0.390 Sum_probs=71.5
Q ss_pred eeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeee
Q psy15141 2 CGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 2 cGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGe 79 (95)
+||+|+++.+.++.. .....|+.+|+|||||++++|..+ +++|||+||+|++.+.+.||+...+ ++++++||||
T Consensus 1 s~I~Gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~~~~~~~---~~~lgh~Rlsi~~~~~~~~~~~~~~-~~~~lv~NGe 76 (192)
T d1ct9a2 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASD---NAILAHERLSIVDVNAGAQPLYNQQ-KTHVLAVNGE 76 (192)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECS---SEEEEEEECCCSCTTTCCSSEECTT-SCEEEEEEEE
T ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHhcccCCCCCCeEEeC---CEEEEEEEEEEccccCCcccccccC-CceEEEecCc
Confidence 689999987544321 123446678999999999999875 6899999999999877778877776 7899999999
Q ss_pred EcChHHHHHHHHh
Q psy15141 80 IYNFKRLGVQVRS 92 (95)
Q Consensus 80 IyN~~eL~~~L~~ 92 (95)
|||+.+|+++|..
T Consensus 77 I~N~~~l~~~l~~ 89 (192)
T d1ct9a2 77 IYNHQALRAEYGD 89 (192)
T ss_dssp ETTHHHHHHHHTT
T ss_pred cchhHHHHHHHhc
Confidence 9999999999854
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.4e-25 Score=147.78 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=71.7
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeeec
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~~ 56 (95)
|||+|+++.. + .......++.+|+|||||++|+++.+. .+.++|||+||+|.+
T Consensus 1 CGI~G~~~~~-~-~~~~l~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~igH~R~aT~g 78 (238)
T d1xffa_ 1 CGIVGAIAQR-D-VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHG 78 (238)
T ss_dssp CEEEEEECSS-C-CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCSSS
T ss_pred CEEEEEECCh-h-HHHHHHHHHHHhcccCccccCEEEEcCCCCEEEEeeccccccccccccccccCCcEEEeeecccccc
Confidence 9999999863 2 234556678899999999999987532 145789999999998
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .++||+.. ++++++|||+|||+.+||++|++++
T Consensus 79 ~~~~~n~~p~~~---~~~~~vhNG~I~N~~~L~~~L~~~g 115 (238)
T d1xffa_ 79 EPSEVNAHPHVS---EHIVVVHNGIIENHEPLREELKARG 115 (238)
T ss_dssp CSSTTTSSCEEE---TTEEEEEEEEETTHHHHHHHHHHTT
T ss_pred cccccCCccccC---CcEEEEEcCcccCHHHHHHHHHHcC
Confidence 75 56789887 4599999999999999999998653
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.6e-24 Score=144.60 Aligned_cols=91 Identities=25% Similarity=0.391 Sum_probs=72.8
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.+ ........++.+|+|||||++|++.... .+.+++||+|+++.+.
T Consensus 1 CGI~G~~~~~--~~~~~~~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igh~r~~t~g~ 78 (234)
T d1gph12 1 CGVFGIWGHE--EAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGG 78 (234)
T ss_dssp CEEEEEESCT--THHHHHHHHHHTTGGGCSSCEEEEEECSSCEEEEEESSCHHHHTCSSSTTTCCCSEEEEEECCCSSSC
T ss_pred CeEEEEECCc--ccHHHHHHHHHHhhcCCcccCcEEEEcCCEEEEEecCCcccccchhhhcccCCCceeeeeecccccCC
Confidence 9999999863 2234456688899999999999987532 2467899999999986
Q ss_pred C--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 58 L--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 58 ~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
. .+.||+... ..++++|||||+|||+.|||++|.+++
T Consensus 79 ~~~~~~~p~~~~~~~~~~~~lvhNG~I~N~~eL~~~l~~~g 119 (234)
T d1gph12 79 GGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQG 119 (234)
T ss_dssp BCGGGSSCEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTT
T ss_pred chhccccccceeccccceEEEEecccccCHHHHHHHHHHcC
Confidence 4 577897543 226899999999999999999998764
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=5.3e-24 Score=143.55 Aligned_cols=87 Identities=28% Similarity=0.285 Sum_probs=68.8
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeeec
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~~ 56 (95)
|||+|+++.. .....++.++.+|+|||+|++|+...+. .+.+++||+||+|.+
T Consensus 1 CGI~G~~~~~--~~~~~l~~gL~~LqhRG~DsaGIa~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~gIGHtR~aT~G 78 (249)
T d1ecfa2 1 CGIVGIAGVM--PVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAG 78 (249)
T ss_dssp CEEEEEECSS--CCHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTT
T ss_pred CEEEEEEcCh--hhHHHHHHHHHHHhccCcCeeEEEEEECCCEEEEEEcCCccchhhhhhhhccCCCceeeeEeecccCC
Confidence 9999999852 2234456689999999999999986542 145789999999998
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHH
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L 90 (95)
.. .+.||+..+.+++++|||||+|+|+.||++++
T Consensus 79 ~~~~~nahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~ 114 (249)
T d1ecfa2 79 SSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKL 114 (249)
T ss_dssp BCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHH
T ss_pred CCchhcccccccCCCCcEEEEeeeeeccHHHHHHHH
Confidence 63 67899765433779999999999999996654
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}
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class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]
Probab=99.61 E-value=1.2e-17 Score=109.59 Aligned_cols=66 Identities=14% Similarity=-0.116 Sum_probs=54.2
Q ss_pred hccccCCCccceEEecCCCeeEEEEEEeeeecCC-CCCCcEEe-CCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 25 KIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL-YGMQPMKL-HRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 25 ~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~-~~~QP~~~-~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
++.|||||..+..... ...+.|+||++.++. ...||+.. .. ++++++|||||||+++||++|...+
T Consensus 5 c~~~rgpd~~~~~~~~---~~~~~~~rLsi~~l~~~~n~~~~~~~~-~ry~~~~nGEIYN~~~lr~~l~~~~ 72 (204)
T d1q15a2 5 CVVYKGSDTDINNIQR---DFDGKGEALSNGYLFIEQNGHYQKCEM-ERGTAYLIGSLYNRTFLIGLAGVWE 72 (204)
T ss_dssp EEEETCCHHHHHHHHT---TSCEEEEEETTEEEEEETTCCEEEEEC-SSSEEEEEECCSCHHHHHHHHTTTC
T ss_pred eEEEeCCCccchhhhh---hhcchhhhhcchhhhhcccCCCCcccC-CcEEEEEEEEEcCHHHHHHHHHHcC
Confidence 6899999987765443 456789999999985 67788876 44 7899999999999999999997643
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}
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class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.49 E-value=7.2e-16 Score=101.11 Aligned_cols=60 Identities=18% Similarity=0.056 Sum_probs=50.5
Q ss_pred hhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHH
Q psy15141 24 VKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 24 ~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L 90 (95)
.+..||+||....+... .++|+|+|+.+.+.. ++||+... ..++||||||||+.|||++|
T Consensus 27 ~~~~~~~~~~~~~~~~~---~~~l~h~~~~~~~~~-~~qp~~~~---~~~~v~NGeIyN~~eL~~~l 86 (206)
T d1jgta2 27 TRGSHTDIDTPQGERSL---AATLVHAPSVAPDRA-VARSLTGA---PTTAVLAGEIYNRDELLSVL 86 (206)
T ss_dssp SCSEEEECCCTTGGGSC---EEEEEECTTSCGGGG-EEEECSSS---SEEEEEEEEESCHHHHHHTS
T ss_pred hhhhccCCCCCCccccc---ceeecccccccCCcc-cCcccCCC---CEEEEEEEEecCHHHHHHHh
Confidence 36689999998877553 678999998887765 68999774 48999999999999999987
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.37 E-value=1.2e-14 Score=96.94 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=62.1
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccC------CCccceEEecC--------------------------CCeeEEEE
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRG------PDAWRIEYDNH--------------------------VKKTYVGF 49 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRG------pD~~g~~~~~~--------------------------~~~~~lgh 49 (95)
|+|+|+.... . ..+...+..++||| +|+.|+...+. .+.++|||
T Consensus 1 C~l~g~~s~~-p---~~i~~~l~~l~~r~~~~~~h~DGwGia~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~s~~~igH 76 (253)
T d1te5a_ 1 CELLGMSANV-P---TDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGH 76 (253)
T ss_dssp CCEEEEEEEE-E---EECEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEEEEE
T ss_pred CEEEEEEcCC-C---ccHHHHHHHHHhcCCcCCCCCCeEEEEEEeCCeEEEEEcCceeccCHHHHHHhhCcCCCcEEEEE
Confidence 9999997631 1 11223456788988 48888865431 14578999
Q ss_pred EEeeeecCC--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHH
Q psy15141 50 HRLEIVDSL--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVR 91 (95)
Q Consensus 50 ~rl~i~~~~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~ 91 (95)
+|+++.+.. .+.|||... ..++++++|||.|.|+.+|+..|.
T Consensus 77 vR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~~~ 121 (253)
T d1te5a_ 77 IRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYR 121 (253)
T ss_dssp EEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSSC
T ss_pred eeeccCCCCccccCCceEEEcCCCCEEEEEeeeEechhhhhhhhc
Confidence 999999864 678999653 216799999999999998876554
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}
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class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]
Probab=97.55 E-value=0.00016 Score=50.96 Aligned_cols=34 Identities=29% Similarity=0.216 Sum_probs=27.2
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcCh
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNF 83 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~ 83 (95)
..++|.|+|+||--.+ .-+|||. .|+|||||--.
T Consensus 198 s~~al~H~RFSTNT~PsW~lAQPfR-------~laHNGEINTi 233 (430)
T d1ofda3 198 SNFAVYHRRFSTNTMPKWPLAQPMR-------LLGHNGEINTL 233 (430)
T ss_dssp BSEEEEEECCCSSSCCCGGGSSCCS-------SEEEEECCTTH
T ss_pred EEEEEEEEEEecCCCCcchhcCccc-------cccCCcccccc
Confidence 4578999999987654 6889995 49999999743
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
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class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]
Probab=95.53 E-value=0.005 Score=43.00 Aligned_cols=41 Identities=22% Similarity=0.091 Sum_probs=30.5
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHH
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L 90 (95)
..++|.|+|+||--.. .-+|||. .|+|||||=-.+--+..+
T Consensus 202 s~~al~H~RFSTNT~PsW~lAQPFR-------~laHNGEINTi~gN~nwm 244 (422)
T d1ea0a3 202 SDFAIYHQRYSTNTFPTWPLAQPFR-------MLAHNGEINTVKGNVNWM 244 (422)
T ss_dssp BSEEEEEECCCSCSCCCSTTSSCCS-------SEEEEECCTTHHHHHHHH
T ss_pred EEEEEEEeeeeccCCCchhhcCcee-------eecCCCchhhhhhhHHHH
Confidence 4578999999987653 7889995 599999997555444333
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]
Probab=88.29 E-value=0.2 Score=34.66 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=24.7
Q ss_pred eeEEEEeCCCCCCccc---HhhHHhhhccccC--------CCccceEEe
Q psy15141 2 CGIWAIFGHETSNYLT---SCEHNFVKIQHRG--------PDAWRIEYD 39 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~---~~~~~~~~l~hRG--------pD~~g~~~~ 39 (95)
|||-.+.+.++.++.. ..+.++..|.||| -|+.|+..+
T Consensus 1 CGvGfIa~~~g~~SH~iv~~aL~aL~~m~HRGa~gaD~~tGDGAGIl~q 49 (422)
T d1ea0a3 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIHVA 49 (422)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSCCCTTSSCCSCBCEEEE
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHhcCCCCCCcCCCCCCCCcceEecc
Confidence 9977676665444322 2334577999999 667777654
