Psyllid ID: psy15170

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MEYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAEESRWNHYNEFVFCRE
ccccccEEEEEccEEEEEcHHHHHcccccHHHHHHccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccEEEEEccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccEEEEEEc
cccccEEEEEcccEEEEEEHHHHccccHHHHHHHHccccccEccccccEEEEEcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccEEEEEcccEEccccccccEEEEEEEEEEEEccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccHcHHHHcccEEEEEEc
MEYPAIVELNVggvfyttslstitrdpsshiarlfsnpenspqkdakgkyfidrdGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYglpamidsifhsddskrgagyitigyrgsfafgrdgladvkFRKITRILVCGRVTLCRDVFgetlnesrdpdhgltdrYTARFFLKHSSIEQAFDMLQEQGFHlvgscgsgtagstapsdlkpgvdaeesrwnhynefvfcre
MEYPAIVELNVGGVFYTTSLSTITRDPSSHIARLfsnpenspqkdakgkyfiDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFgetlnesrdpdhglTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAEESRWNHYNEFVFCRE
MEYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVgscgsgtagstapsDLKPGVDAEESRWNHYNEFVFCRE
****AIVELNVGGVFYTTSLSTIT***********************GKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNE****DHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSC***********************WNHYNEFVFC**
**YPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSG**************DAEESRWNHYNEFVFCRE
MEYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGS****************AEESRWNHYNEFVFCRE
**YPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAEESRWNHYNEFVFCRE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAEESRWNHYNEFVFCRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q68DU8 428 BTB/POZ domain-containing yes N/A 0.957 0.521 0.449 2e-55
Q5DTY9 427 BTB/POZ domain-containing yes N/A 0.957 0.522 0.445 3e-55
Q50H33 476 BTB/POZ domain-containing no N/A 0.944 0.462 0.389 1e-47
Q96CX2325 BTB/POZ domain-containing no N/A 0.545 0.390 0.511 7e-34
Q6WVG3327 BTB/POZ domain-containing no N/A 0.545 0.388 0.511 8e-34
Q6ZWB6 473 BTB/POZ domain-containing no N/A 0.497 0.245 0.475 3e-28
Q6DCX3255 BTB/POZ domain-containing N/A N/A 0.858 0.784 0.323 2e-23
Q6P3P4255 BTB/POZ domain-containing no N/A 0.858 0.784 0.315 8e-23
Q5XJ34257 BTB/POZ domain-containing no N/A 0.798 0.723 0.341 7e-22
Q8K0E1283 BTB/POZ domain-containing no N/A 0.828 0.681 0.306 3e-21
>sp|Q68DU8|KCD16_HUMAN BTB/POZ domain-containing protein KCTD16 OS=Homo sapiens GN=KCTD16 PE=2 SV=1 Back     alignment and function desciption
 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/265 (44%), Positives = 163/265 (61%), Gaps = 42/265 (15%)

Query: 3   YPAIVELNVGGVFYTTSLSTITRDPSSHIARLFS---NPENSPQKDAKGKYFIDRDGVLF 59
           +P +VELNVGG  Y T  ST+   P S + ++FS   +  N   KD+KG++FIDRDG LF
Sbjct: 23  FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLF 82

Query: 60  RYVLDYLRNQMLILPESFREKERLRQEAIYYGLPAMI------------DSIFHSD--DS 105
           RY+LDYLR++ ++LP+ F EK RL++EA Y+ LP ++            D   HSD  D+
Sbjct: 83  RYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTPDEIKQSPDEFCHSDFEDA 142

Query: 106 KRGA-----------------GYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVTLCR 148
            +G+                 G+IT+GYRGS   GR+G AD KFR++ RILVCGR++L +
Sbjct: 143 SQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLAK 202

Query: 149 DVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAP 208
           +VFGETLNESRDPD    +RYT+RF+LK   +E+AFDML E GFH+V +C S    S   
Sbjct: 203 EVFGETLNESRDPDRA-PERYTSRFYLKFKHLERAFDMLSECGFHMV-ACNSSVTASFI- 259

Query: 209 SDLKPGVDAEESRWNHYNEFVFCRE 233
                    ++  W+ Y E+VF RE
Sbjct: 260 -----NQYTDDKIWSSYTEYVFYRE 279
Auxiliary subunit of GABA-B receptors that determine the pharmacology and kinetics of the receptor response. Increases agonist potency and markedly alter the G-protein signaling of the receptors by accelerating onset and promoting desensitization.
Homo sapiens (taxid: 9606)
>sp|Q5DTY9|KCD16_MOUSE BTB/POZ domain-containing protein KCTD16 OS=Mus musculus GN=Kctd16 PE=1 SV=2 Back     alignment and function description
>sp|Q50H33|KCTD8_MOUSE BTB/POZ domain-containing protein KCTD8 OS=Mus musculus GN=Kctd8 PE=1 SV=1 Back     alignment and function description
>sp|Q96CX2|KCD12_HUMAN BTB/POZ domain-containing protein KCTD12 OS=Homo sapiens GN=KCTD12 PE=1 SV=1 Back     alignment and function description
>sp|Q6WVG3|KCD12_MOUSE BTB/POZ domain-containing protein KCTD12 OS=Mus musculus GN=Kctd12 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZWB6|KCTD8_HUMAN BTB/POZ domain-containing protein KCTD8 OS=Homo sapiens GN=KCTD8 PE=2 SV=1 Back     alignment and function description
>sp|Q6DCX3|KCD15_XENLA BTB/POZ domain-containing protein kctd15 OS=Xenopus laevis GN=kctd15 PE=2 SV=1 Back     alignment and function description
>sp|Q6P3P4|KCD15_XENTR BTB/POZ domain-containing protein kctd15 OS=Xenopus tropicalis GN=kctd15 PE=2 SV=1 Back     alignment and function description
>sp|Q5XJ34|KC15L_DANRE BTB/POZ domain-containing protein kctd15-like OS=Danio rerio GN=kctd15l PE=1 SV=1 Back     alignment and function description
>sp|Q8K0E1|KCD15_MOUSE BTB/POZ domain-containing protein KCTD15 OS=Mus musculus GN=Kctd15 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
350419453250 PREDICTED: BTB/POZ domain-containing pro 0.978 0.912 0.735 3e-98
380023522250 PREDICTED: BTB/POZ domain-containing pro 0.978 0.912 0.739 3e-98
328792550250 PREDICTED: BTB/POZ domain-containing pro 0.978 0.912 0.739 4e-98
340728453250 PREDICTED: BTB/POZ domain-containing pro 0.978 0.912 0.735 4e-98
332020983247 BTB/POZ domain-containing protein KCTD16 0.978 0.923 0.723 8e-98
322797370261 hypothetical protein SINV_10757 [Solenop 0.978 0.873 0.722 1e-97
383861795249 PREDICTED: BTB/POZ domain-containing pro 0.978 0.915 0.734 2e-97
307207194250 BTB/POZ domain-containing protein KCTD16 0.978 0.912 0.716 3e-97
307190239247 BTB/POZ domain-containing protein KCTD16 0.978 0.923 0.719 3e-97
242006448243 BTB/POZ domain-containing protein kctd15 0.987 0.946 0.707 7e-95
>gi|350419453|ref|XP_003492187.1| PREDICTED: BTB/POZ domain-containing protein KCTD16-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 175/238 (73%), Positives = 203/238 (85%), Gaps = 10/238 (4%)

Query: 4   PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVL 63
           P++VELNVGGVFYTT+L+T+TR+  S++A LFS  +   +KDAKGKYF+DRDGVLFRYVL
Sbjct: 15  PSVVELNVGGVFYTTALTTLTRESDSYLATLFSG-KTLIEKDAKGKYFLDRDGVLFRYVL 73

Query: 64  DYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDS--------KRGAGYITIG 115
           D+LRNQ L+LPE FREKERL+QEA +YGLP +  +I  +  S        K+ +GYIT+G
Sbjct: 74  DFLRNQALVLPEGFREKERLKQEANFYGLPGLERAILENGRSSGSLTSSGKKASGYITVG 133

Query: 116 YRGSFAFGRDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFL 175
           YRGSFAFGR+GLADVKFRK++RILVCGRVTLCRDVFGETLNESRDPDHG TDRYT+RFFL
Sbjct: 134 YRGSFAFGREGLADVKFRKLSRILVCGRVTLCRDVFGETLNESRDPDHGTTDRYTSRFFL 193

Query: 176 KHSSIEQAFDMLQEQGFHLVGSCGSGTAGSTAPSDLKPGVDAEESRWNHYNEFVFCRE 233
           KHSSIEQAFDMLQEQGF L GSCGSGTAGS +   LKPGVD+EE+RWNHYNEFVF RE
Sbjct: 194 KHSSIEQAFDMLQEQGFKLAGSCGSGTAGSNSE-QLKPGVDSEENRWNHYNEFVFIRE 250

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380023522|ref|XP_003695568.1| PREDICTED: BTB/POZ domain-containing protein KCTD16-like [Apis florea] Back     alignment and taxonomy information
>gi|328792550|ref|XP_003251743.1| PREDICTED: BTB/POZ domain-containing protein KCTD16-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340728453|ref|XP_003402539.1| PREDICTED: BTB/POZ domain-containing protein KCTD16-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332020983|gb|EGI61376.1| BTB/POZ domain-containing protein KCTD16 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322797370|gb|EFZ19482.1| hypothetical protein SINV_10757 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383861795|ref|XP_003706370.1| PREDICTED: BTB/POZ domain-containing protein KCTD12-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307207194|gb|EFN84984.1| BTB/POZ domain-containing protein KCTD16 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307190239|gb|EFN74350.1| BTB/POZ domain-containing protein KCTD16 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242006448|ref|XP_002424062.1| BTB/POZ domain-containing protein kctd15, putative [Pediculus humanus corporis] gi|212507368|gb|EEB11324.1| BTB/POZ domain-containing protein kctd15, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
FB|FBgn0038839228 CG10830 [Drosophila melanogast 0.974 0.995 0.604 6.7e-72
UNIPROTKB|E2RJY0327 KCTD12 "Uncharacterized protei 0.532 0.379 0.5 2.6e-55
UNIPROTKB|Q96CX2325 KCTD12 "BTB/POZ domain-contain 0.532 0.381 0.5 2.6e-55
RGD|1309421327 Kctd12 "potassium channel tetr 0.532 0.379 0.5 2.6e-55
UNIPROTKB|G3N3D4326 KCTD12 "Uncharacterized protei 0.532 0.380 0.5 3.3e-55
UNIPROTKB|F1RHE6326 KCTD12 "Uncharacterized protei 0.532 0.380 0.5 3.3e-55
MGI|MGI:2145823327 Kctd12 "potassium channel tetr 0.532 0.379 0.5 6.9e-55
UNIPROTKB|E1C3V1 427 KCTD16 "Uncharacterized protei 0.519 0.283 0.488 4.2e-53
UNIPROTKB|Q68DU8 428 KCTD16 "BTB/POZ domain-contain 0.497 0.271 0.5 5.4e-53
MGI|MGI:1914659 427 Kctd16 "potassium channel tetr 0.497 0.271 0.508 6.9e-53
FB|FBgn0038839 CG10830 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 139/230 (60%), Positives = 174/230 (75%)

Query:     4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVL 63
             P I+ELNVGGV YTT+L+T+ +D S+ +A LF    +S  KD+KG+YF+DRDGVLFRY+L
Sbjct:     2 PEIIELNVGGVSYTTTLATLLQDKSTLLAELFGEGRDSLAKDSKGRYFLDRDGVLFRYIL 61

Query:    64 DYLRNQMLILPESFREKERLRQEAIYYGLPAMIDSIFHSDDSKRGAGYITIGYRGSFAFG 123
             D+LR++ L LPE FRE++RL +EA ++ L AM++ I  S+   R  G ITIGYRGSF FG
Sbjct:    62 DFLRDKALHLPEGFRERQRLLREAEHFKLTAMLECI-RSERDARPPGCITIGYRGSFQFG 120

Query:   124 RDGLADVKFRKITRILVCGRVTLCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQA 183
             +DGLADVKFRK++RILVCGRV  CR+VFG+TLNESRDPDHG TDRYT+RFFLKH  IEQA
Sbjct:   121 KDGLADVKFRKLSRILVCGRVAQCREVFGDTLNESRDPDHGGTDRYTSRFFLKHCYIEQA 180

Query:   184 FDMLQEQGFHLVXXXXXXXXXXXXXXDLKPGVDAEESRWNHYNEFVFCRE 233
             FD L + G+ +               + KPGVD EE+RWNHYNEFVF R+
Sbjct:   181 FDNLHDHGYRMAGSCGSGTAGSAA--EPKPGVDTEENRWNHYNEFVFIRD 228
GO:0051260 "protein homooligomerization" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|E2RJY0 KCTD12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CX2 KCTD12 "BTB/POZ domain-containing protein KCTD12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309421 Kctd12 "potassium channel tetramerisation domain containing 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3N3D4 KCTD12 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHE6 KCTD12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2145823 Kctd12 "potassium channel tetramerisation domain containing 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3V1 KCTD16 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q68DU8 KCTD16 "BTB/POZ domain-containing protein KCTD16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914659 Kctd16 "potassium channel tetramerisation domain containing 16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
pfam0221492 pfam02214, K_tetra, K+ channel tetramerisation dom 4e-14
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 5e-06
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain Back     alignment and domain information 
 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 7  VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
          V LNVGG  + TS ST+TR P + + RL          D   +YF DR    F  +L++ 
Sbjct: 1  VRLNVGGKRFETSKSTLTRFPDTLLGRLLK--RCDFYDDDTNEYFFDRSPKHFETILNFY 58

Query: 67 RNQMLILPESFREKER-LRQEAIYYGLP 93
          R     L            +E  +YGL 
Sbjct: 59 RTG-GKLHRPEEVCLDSFLEELEFYGLG 85

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
KOG2723|consensus221 100.0
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 99.93
KOG2715|consensus210 99.92
KOG2716|consensus230 99.92
KOG1665|consensus302 99.9
KOG2714|consensus 465 99.87
KOG3713|consensus 477 99.74
KOG4390|consensus 632 99.63
KOG1545|consensus 507 99.03
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.99
KOG3840|consensus 438 98.21
PHA03098 534 kelch-like protein; Provisional 97.32
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 97.04
PHA02790 480 Kelch-like protein; Provisional 96.68
PHA02713 557 hypothetical protein; Provisional 95.92
KOG4441|consensus 571 94.59
>KOG2723|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.2e-43  Score=305.16  Aligned_cols=197  Identities=55%  Similarity=0.908  Sum_probs=180.2

Q ss_pred             CCCCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHH
Q psy15170          2 EYPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKE   81 (233)
Q Consensus         2 ~~~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~   81 (233)
                      .++++|+|||||++|+|+++||+++|+|+|++||++ +.++.+|.+|.||||||+.+|+|||+|||+.++.+|+++.+..
T Consensus         6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~-~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~   84 (221)
T KOG2723|consen    6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSG-ELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVE   84 (221)
T ss_pred             ccCCceeeccCCeEEEeeccceeechHHHHHhhcCC-CCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHH
Confidence            357999999999999999999999999999999998 4677899999999999999999999999998899999999999


Q ss_pred             HHHHHHHhcCChhHHHhccccccc----------------CCCCceEEEeeecccccccCCchhhhhceeeeEEEEeeee
Q psy15170         82 RLRQEAIYYGLPAMIDSIFHSDDS----------------KRGAGYITIGYRGSFAFGRDGLADVKFRKITRILVCGRVT  145 (233)
Q Consensus        82 ~L~~EA~fy~L~~Li~~l~~~~~~----------------~~~~~~i~i~yr~~~~~~rd~~~~~~f~~~~ri~v~~~~~  145 (233)
                      .|++||+||+|..+...+.+..+.                .+..++++++||+++ ++|+++++++|+++.+|++||..+
T Consensus        85 ~L~rEA~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~g~~~~~~~~~~~~~~~~~~~~~~  163 (221)
T KOG2723|consen   85 RLVREAEFFQLEAPVTYLLNSGQIDTERRNRFCRSDECDGLRARGGPTLGYRGSL-FGRDAQADEKFRRVVRILVCGRGA  163 (221)
T ss_pred             HHHHHHHHHccccHHHHHhcccccccccccccccccccccccccccccccchhhe-ecCcccceeeccchhhhhhhhhhh
Confidence            999999999999776655433221                134578899999999 999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCCCCcceeeeccCcchHHHHHHHHHhcCcEEEEecCCCCC
Q psy15170        146 LCRDVFGETLNESRDPDHGLTDRYTARFFLKHSSIEQAFDMLQEQGFHLVGSCGSGTA  203 (233)
Q Consensus       146 l~~~vFg~~~n~s~d~~~~~~~~y~~rf~lk~~~leq~~~~l~~~gf~~~~~~~~g~~  203 (233)
                      +++++| +++|+++||++|+++.|++++++|+.  ||+|+.+.+.|++++++|+.++.
T Consensus       164 l~~~~~-d~~~~~r~~~~g~~~~~~~~~l~~~l--~qgF~i~s~~g~~~~~~~~~~~~  218 (221)
T KOG2723|consen  164 LGKEVF-DTLNESRDPDRGPPEVYTSRVLLKFL--EQGFDIDSEFGFHMDACNSSSTR  218 (221)
T ss_pred             hhhccc-CCCCceecCCCCCcccchHHHHHHHH--HhhcccccccCcchhhhccccee
Confidence            999999 99999999999989999999999988  99999999999999999988775

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3drz_A107 X-Ray Crystal Structure Of The N-Terminal Btb Domai 3e-11
3drx_A202 X-Ray Crystal Structure Of Human Kctd5 Protein Crys 4e-11
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 7  VELNVGGVFYTTSLSTITRDPSSHIARLF-SNPENSPQKDAKGKYFIDRDGVLFRYVLDY 65
          V LNVGG ++ T+  T+ RDP S + RL  ++P+    KD  G Y IDRD   F  VL+Y
Sbjct: 8  VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 67
Query: 66 LRNQMLILPESFREKERLRQEAIYYGLPAMI 96
          LR+  L++ +   E E + +EA +Y + ++I
Sbjct: 68 LRHGKLVINKDLAE-EGVLEEAEFYNITSLI 97
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 9e-33
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 3e-31
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 1e-23
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 2e-23
3kvt_A115 Potassium channel protein SHAW; tetramerization do 1e-22
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 3e-22
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 5e-20
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 Back     alignment and structure
 Score =  113 bits (286), Expect = 9e-33
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 6   IVELNVGGVFYTTSLSTITRDPSSHIARLFS-NPENSPQKDAKGKYFIDRDGVLFRYVLD 64
            V LNVGG ++ T+  T+ RDP S + RL   +P+    KD  G Y IDRD   F  VL+
Sbjct: 7   WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLN 66

Query: 65  YLRNQMLILPESFREKERLRQEAIYYGLPAMIDSI 99
           YLR+  L++ +   E+  + +EA +Y + ++I  +
Sbjct: 67  YLRHGKLVINKDLAEEG-VLEEAEFYNITSLIKLV 100
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 99.96
3kvt_A115 Potassium channel protein SHAW; tetramerization do 99.96
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 99.96
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 99.96
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 99.95
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 99.94
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 99.94
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 99.86
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.37
2vpk_A116 Myoneurin; transcription regulation, transcription 98.26
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.13
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.13
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.12
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.07
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.06
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.05
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.05
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.96
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.95
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 97.94
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 97.91
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 97.91
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 97.84
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 97.69
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 97.63
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.59
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.53
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.4
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 92.65
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 83.9
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
Probab=99.96  E-value=4.5e-31  Score=205.27  Aligned_cols=100  Identities=35%  Similarity=0.606  Sum_probs=89.0

Q ss_pred             CCCeEEEEECCeEEEecHHhhccCCCCccccccCCCCC-CCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHH
Q psy15170          3 YPAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPEN-SPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKE   81 (233)
Q Consensus         3 ~~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~-~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~   81 (233)
                      .+++|+|||||++|+|+++||+++|+|+|++||++... ....|++|+|||||||.+|++||||||+|++++|++++. .
T Consensus         4 ~~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~-~   82 (107)
T 3drz_A            4 VSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAE-E   82 (107)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCH-H
T ss_pred             CCCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCH-H
Confidence            57899999999999999999999999999999986421 123568899999999999999999999999999999986 5


Q ss_pred             HHHHHHHhcCChhHHHhccccc
Q psy15170         82 RLRQEAIYYGLPAMIDSIFHSD  103 (233)
Q Consensus        82 ~L~~EA~fy~L~~Li~~l~~~~  103 (233)
                      .|++||+||+|.+|+++|++++
T Consensus        83 ~l~~Ea~fy~l~~L~~~l~~~i  104 (107)
T 3drz_A           83 GVLEEAEFYNITSLIKLVKDKI  104 (107)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            6999999999999999998754
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1t1da_100 d.42.1.2 (A:) Shaker potassium channel {California 7e-24
d1nn7a_105 d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus 2e-22
d3kvta_103 d.42.1.2 (A:) akv3.1 voltage-gated potassium chann 2e-20
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 89.5 bits (222), Expect = 7e-24
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 7  VELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYL 66
          V +NV G+ + T L T+ + P + +        N      + +YF DR+   F  +L + 
Sbjct: 3  VVINVSGLRFETQLKTLNQFPDTLLGNPQKR--NRYYDPLRNEYFFDRNRPSFDAILYFY 60

Query: 67 RNQMLILPESFREKERLRQEAIYYGLPAM 95
          ++   +        +   +E  +Y L   
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYELGEN 89
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d3kvta_103 akv3.1 voltage-gated potassium channel {California 99.95
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 99.94
d1t1da_100 Shaker potassium channel {California sea hare (Apl 99.94
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.09
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 97.79
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.95  E-value=1.6e-28  Score=188.29  Aligned_cols=88  Identities=25%  Similarity=0.420  Sum_probs=80.3

Q ss_pred             CCeEEEEECCeEEEecHHhhccCCCCccccccCCCCCCCCcCCCccEEEcCCCCchHHHhhhhccceecCCCCcchHHHH
Q psy15170          4 PAIVELNVGGVFYTTSLSTITRDPSSHIARLFSNPENSPQKDAKGKYFIDRDGVLFRYVLDYLRNQMLILPESFREKERL   83 (233)
Q Consensus         4 ~~~V~LNVGG~~F~Tt~sTL~~~P~S~L~~lfs~~~~~~~~d~~g~yFIDRDp~~F~~ILnyLR~g~l~lP~~~~e~~~L   83 (233)
                      .+.|+|||||++|+|+++||+++|+|+|+.++++.  ....+.+|+|||||||.+|++||||||+|++++|++.+ ...|
T Consensus         1 ~~rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~--~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~~p~~~~-~~~l   77 (103)
T d3kvta_           1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGM--LNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVC-GPLF   77 (103)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTS--TTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSC-HHHH
T ss_pred             CCEEEEEECCEEEEEeHHHHhhCccchhHHHHcCC--CccCCCCCcEEecCCHHHHHHHHHHHccCCcccccccC-HHHH
Confidence            36899999999999999999999999999999864  23567899999999999999999999999999999986 4679


Q ss_pred             HHHHHhcCChh
Q psy15170         84 RQEAIYYGLPA   94 (233)
Q Consensus        84 ~~EA~fy~L~~   94 (233)
                      ++||+||+|++
T Consensus        78 ~~Ea~yygi~~   88 (103)
T d3kvta_          78 EEELEFWGLDS   88 (103)
T ss_dssp             HHHHHHHTCCG
T ss_pred             HHHHHHcCCCH
Confidence            99999999985
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure