Psyllid ID: psy15181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKRSLCEWT
Secondary Structure (PSIPRED)
cccccccccccccccccHHcccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEEcccccccHHHHHccccccHHHHHHHHHcccEEEEcccccccccccccccccccccEEEEEEccccEEEEEEEccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEcccccccEEEEEEEEEEEccccccccccHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHcccEEEEccccHHHHcccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEEcccccccHHHHHccccccHHHHHHHHHHccEEEEcccccccEEcccccccccccEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHcccccEEEEEEccccccccccccccHcccEEEEEEEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mspahrnkhfhkLDLESVkrsmgrnsrepvrygsnpsAVFLSLfhspqfggtnekpilvsneqgkraisnldwippyethkvgvlyvgpgqgnseqEILRNQYGSIRYMDFLQRLGTLikltdadplnvflggletngsdgkytySWQDEVMQVIFHVATmmptlesdpncnnkkknigndYVTIVYNesgvdynirtVKVRlcpvdynirtvkvrlcpvdynirTVKVrlagcpcfvtdkidhnsksvwihqnpfsylehiknlptklqlssclgsedkvkrslcewt
Flexible Loop (DISEMBL)
mspahrnkhfhkldlesvkrsmgrnsrEPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNesgvdynirtvkvrlcpvdynirtvkvrlcpvdynirtvkVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKlqlssclgsedkvkrslcewt
Low Complexity Region (SEG)
MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKRSLCEWT
Disordered region (IsUnstruct)
*************************************AVFLSLFHSPQFGGT**KPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLES*PNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCL**************
Disordered Region (DISOPRED)
**************************************VFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEH*******L**SSCLGSEDKVKRSLC***
Disordered Region (DISEMBL)
********HFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKRSLCEWT
Disordered Region (DISPRO)
*******KHFHKLDLESVKRS**********YGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKRSLCEWT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKRSLCEWT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q61037	1814	Tuberin OS=Mus musculus G	no	N/A	0.778	0.124	0.447	8e-53
P49815	1807	Tuberin OS=Homo sapiens G	yes	N/A	0.958	0.153	0.401	2e-52
P49816	1809	Tuberin OS=Rattus norvegi	yes	N/A	0.937	0.149	0.404	3e-52
Q9UUG9	1339	Tuberous sclerosis 2 prot	yes	N/A	0.615	0.132	0.415	5e-29
Q6GYQ0	2036	Ral GTPase-activating pro	no	N/A	0.602	0.085	0.347	1e-17
P86411	1872	Ral GTPase-activating pro	no	N/A	0.460	0.071	0.384	1e-16
A3KGS3	1872	Ral GTPase-activating pro	no	N/A	0.460	0.071	0.384	1e-16
Q2PPJ7	1873	Ral GTPase-activating pro	no	N/A	0.460	0.071	0.384	2e-16
Q6GYP7	2035	Ral GTPase-activating pro	no	N/A	0.460	0.065	0.405	3e-16
Q9VB98	1958	Probable Rho GTPase-activ	no	N/A	0.498	0.073	0.36	3e-14

>sp|Q61037|TSC2_MOUSE Tuberin OS=Mus musculus GN=Tsc2 PE=1 SV=1

 Score =  207 bits (526), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 154/237 (64%), Gaps = 12/237 (5%)

Query: 2    SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
            +P+ R K   +++ ++ K     +S E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct: 1470 APSRRGK---RVERDNFKSRAAASSAEKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 1525

Query: 62   EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
            E  +R++  LD IP Y+THK+ VLYVG GQ +SE  IL N++GS RY +FL  LG LI+L
Sbjct: 1526 ESFERSVQLLDQIPSYDTHKIAVLYVGEGQSSSELAILSNEHGSYRYTEFLTGLGRLIEL 1585

Query: 122  TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
             D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++GND
Sbjct: 1586 KDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGND 1645

Query: 182  YVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY--NIRTVKVRLAGCPC 236
            +V+I+YN+SG D+ + T+K            V V + P+DY  N+ T++ R  G  C
Sbjct: 1646 FVSIIYNDSGEDFKLGTIK------QGQFNFVHVIITPLDYKCNLLTLQCRKDGPAC 1696

In complex with TSC1, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Acts as a GTPase-activating protein (GAP) for the small GTPase RHEB, a direct activator of the protein kinase activity of mTORC1. Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling (By similarity). Specifically stimulates the intrinsic GTPase activity of the Ras-related protein RAP1A and RAB5. Suggesting a possible mechanism for its role in regulating cellular growth.
Mus musculus (taxid: 10090)

>sp|P49815|TSC2_HUMAN Tuberin OS=Homo sapiens GN=TSC2 PE=1 SV=2

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 179/299 (59%), Gaps = 22/299 (7%)

Query: 2    SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
            +P+ R K   +  L+S  R+   N+ +    G NPS VFL L+HSP FG  + KPIL+ N
Sbjct: 1467 APSRRGKRVERDALKS--RATASNAEKVP--GINPSFVFLQLYHSPFFGDESNKPILLPN 1522

Query: 62   EQG--KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
            E    +R++  LD IP Y+THK+ VLYVG GQ NSE  IL N++GS RY +FL  LG LI
Sbjct: 1523 ESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLI 1582

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++G
Sbjct: 1583 ELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLG 1642

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLA 232
            ND+V+IVYN+SG D+ + T+K       V + P+DY    V ++ C  D     V   +A
Sbjct: 1643 NDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQ-CRKDME-GLVDTSVA 1700

Query: 233  GCPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR---SLCE 287
                 V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR    +CE
Sbjct: 1701 K---IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICE 1756

In complex with TSC1, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Acts as a GTPase-activating protein (GAP) for the small GTPase RHEB, a direct activator of the protein kinase activity of mTORC1. Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling. Stimulates weakly the intrinsic GTPase activity of the Ras-related proteins RAP1A and RAB5 in vitro. Mutations in TSC2 lead to constitutive activation of RAP1A in tumors.

Homo sapiens (taxid: 9606)

>sp|P49816|TSC2_RAT Tuberin OS=Rattus norvegicus GN=Tsc2 PE=1 SV=1

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 179/292 (61%), Gaps = 21/292 (7%)

Query: 2    SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
            +P+ R K   +++ ++ K     +S E V  G NPS VFL L+HSP  G  + KPIL+ N
Sbjct: 1471 APSRRGK---RVERDNFKSRTAASSAEKVP-GINPSFVFLQLYHSPFCGDESNKPILLPN 1526

Query: 62   EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
            E  +R++  LD IP Y+THK+ VLYVG GQ +SE  IL N++GS RY +FL  LG LI+L
Sbjct: 1527 ESFERSVQLLDQIPSYDTHKIAVLYVGEGQSSSELAILSNEHGSYRYTEFLTGLGRLIEL 1586

Query: 122  TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
             D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++GND
Sbjct: 1587 KDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGND 1646

Query: 182  YVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY--NIRTVKVR--LAGCPCF 237
            +V+I+YN+SG D+ + T+K +     +N   V V + P+DY  N+ T++ R  + G    
Sbjct: 1647 FVSIIYNDSGEDFKLGTIKGQ-----FNF--VHVIITPLDYKCNLLTLQCRKDMEGLVDT 1699

Query: 238  VTDKI--DHN----SKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
               KI  D N    ++ + +H N  S + H ++ PT +  S  +     +KR
Sbjct: 1700 SVAKIVSDRNLSFVARQMALHANMASQVHHRRSNPTDIYPSKWIARLRHIKR 1751

In complex with TSC1, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Acts as a GTPase-activating protein (GAP) for the small GTPase RHEB, a direct activator of the protein kinase activity of mTORC1 (By similarity). Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling (By similarity). Specifically stimulates the intrinsic GTPase activity of the Ras-related protein RAP1A and RAB5. Suggesting a possible mechanism for its role in regulating cellular growth.

Rattus norvegicus (taxid: 10116)

>sp|Q9UUG9|TSC2_SCHPO Tuberous sclerosis 2 protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsc2 PE=1 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 17/195 (8%)

Query: 36   PSAVFLSLFHSPQFGGTNEKPILV--SNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGN 93
            PS+ F+S F  P       +P+L+  +++  +RAIS  D IP  E+ K G++YVG  Q  
Sbjct: 1047 PSS-FVSHFLDPHGISLYNQPLLLPSNDDSVRRAISVFDRIPVIESLKAGLVYVG-YQQR 1104

Query: 94   SEQEILRNQYGSIRYMDFLQRLGTLIKL-TDADPLNVFLGGLE-TNGSDGKYTYSWQDEV 151
             E +IL N   S  ++ FL  LGTL +L TD     VF GGL+  N  DG + Y W+D+V
Sbjct: 1105 READILANTNPSEDFLTFLNGLGTLFELKTDQ---KVFAGGLDRENDIDGAFAYCWKDKV 1161

Query: 152  MQVIFHVATMMPT-LESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNI 210
             Q++FH  TMMPT +E DP C  KK++IGND+VTI++NESG++Y+  T+     P  +N 
Sbjct: 1162 TQMVFHCTTMMPTNIEHDPGCTLKKRHIGNDFVTIIFNESGLEYDFDTI-----PSQFNF 1216

Query: 211  RTVKVRLCPVDYNIR 225
              V + + P   +IR
Sbjct: 1217 --VNIVITPESESIR 1229

Together with tsc1, required for uptake of various amino-acids from the environment and for proper conjugation. Involved in induction of gene expression of permeases and genes required for meiosis upon nitrogen starvation. May act as a GTPase-activating protein (GAP) for the small GTPase rhb1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6GYQ0|RGPA1_HUMAN Ral GTPase-activating protein subunit alpha-1 OS=Homo sapiens GN=RALGAPA1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 19/193 (9%)

Query: 8    KHFHKLDLESVKRSMGRNSREPVRYGSNPSAVF------LSLFHSPQFGGTNEKPILVSN 61
            KHF+ L++++V++       EP+     P + F      LS+     +       +L  N
Sbjct: 1738 KHFNDLNMKAVEQD------EPI--PQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKN 1789

Query: 62   EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
            E+  R + NLD     ETHK+ V YV  GQ + +  IL N  GS  Y DF+  LG  + L
Sbjct: 1790 EKLLRELRNLDSRQCRETHKIAVFYVAEGQED-KHSILTNTGGSQAYEDFVAGLGWEVNL 1848

Query: 122  TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
            T+      F+GGL+ N S G  T  +    ++VIFHV+T MP+ +SD +   K +++GND
Sbjct: 1849 TNH---CGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPS-DSDDSLTKKLRHLGND 1904

Query: 182  YVTIVYNESGVDY 194
             V IV++E   DY
Sbjct: 1905 EVHIVWSEHTRDY 1917

Catalytic subunit of the heterodimeric RalGAP1 complex which acts as a GTPase activator for the Ras-like small GTPases RALA and RALB.

Homo sapiens (taxid: 9606)

>sp|P86411|RGPA2_RAT Ral GTPase-activating protein subunit alpha-2 OS=Rattus norvegicus GN=Ralgapa2 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 57   ILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLG 116
            +L  N +  R + NLD     ETHK+ V Y+  GQ + +  IL N+ GS  Y DF+  LG
Sbjct: 1623 LLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQED-KCSILANERGSQAYEDFVAGLG 1681

Query: 117  TLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK 176
              + L+       F+GGL+ NGS G+    +    ++VIFHV+T MP+ +SD +   K +
Sbjct: 1682 WEVDLSTH---CGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPS-DSDDSLTKKLR 1737

Query: 177  NIGNDYVTIVYNESGVDY 194
            ++GND V IV++E   DY
Sbjct: 1738 HLGNDEVHIVWSEHSRDY 1755

Catalytic subunit of the heterodimeric RalGAP2 complex which acts as a GTPase activator for the Ras-like small GTPases RALA and RALB.

Rattus norvegicus (taxid: 10116)

>sp|A3KGS3|RGPA2_MOUSE Ral GTPase-activating protein subunit alpha-2 OS=Mus musculus GN=Ralgapa2 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 57   ILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLG 116
            +L  N +  R + NLD     ETHK+ V Y+  GQ + +  IL N+ GS  Y DF+  LG
Sbjct: 1623 LLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQED-KCSILANERGSQAYEDFVAGLG 1681

Query: 117  TLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK 176
              + L+       F+GGL+ NGS G+    +    ++VIFHV+T MP+ +SD +   K +
Sbjct: 1682 WEVDLSTH---CGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPS-DSDDSLTKKLR 1737

Query: 177  NIGNDYVTIVYNESGVDY 194
            ++GND V IV++E   DY
Sbjct: 1738 HLGNDEVHIVWSEHSRDY 1755

Catalytic subunit of the heterodimeric RalGAP2 complex which acts as a GTPase activator for the Ras-like small GTPases RALA and RALB.

Mus musculus (taxid: 10090)

>sp|Q2PPJ7|RGPA2_HUMAN Ral GTPase-activating protein subunit alpha-2 OS=Homo sapiens GN=RALGAPA2 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 57   ILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLG 116
            +L  N +  R + NLD     ETHK+ V Y+  GQ + +  IL N+ GS  Y DF+  LG
Sbjct: 1624 LLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQED-KCSILSNERGSQAYEDFVAGLG 1682

Query: 117  TLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK 176
              + L+       F+GGL+ NGS G+    +    ++VIFHV+T MP+ +SD +   K +
Sbjct: 1683 WEVDLSTH---CGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPS-DSDDSLTKKLR 1738

Query: 177  NIGNDYVTIVYNESGVDY 194
            ++GND V IV++E   DY
Sbjct: 1739 HLGNDEVHIVWSEHSRDY 1756

Catalytic subunit of the heterodimeric RalGAP2 complex which acts as a GTPase activator for the Ras-like small GTPases RALA and RALB.

Homo sapiens (taxid: 9606)

>sp|Q6GYP7|RGPA1_MOUSE Ral GTPase-activating protein subunit alpha-1 OS=Mus musculus GN=Ralgapa1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 57   ILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLG 116
            +L  NE+  R + NLD     ETHK+ V YV  GQ + +  IL N  GS  Y DF+  LG
Sbjct: 1784 LLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQED-KYSILTNIGGSQAYEDFVAGLG 1842

Query: 117  TLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK 176
              + LT+      F+GGL+ N S G  T  +    ++VIFHV+T MP+ +SD +   K +
Sbjct: 1843 WEVNLTNH---CGFMGGLQKNRSTGLTTPYFATSTVEVIFHVSTRMPS-DSDDSLTKKLR 1898

Query: 177  NIGNDYVTIVYNESGVDY 194
            ++GND V IV++E   DY
Sbjct: 1899 HLGNDEVHIVWSEHTRDY 1916

Catalytic subunit of the heterodimeric RalGAP1 complex which acts as a GTPase activator for the Ras-like small GTPases RALA and RALB (By similarity). May interact with the HLH region of TCF3/isoform E12.

Mus musculus (taxid: 10090)

>sp|Q9VB98|Y5521_DROME Probable Rho GTPase-activating protein CG5521 OS=Drosophila melanogaster GN=CG5521 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 6/150 (4%)

Query: 57   ILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLG 116
            +L  +E+  R + N+D     ETHK+ V+YV  GQ + +  ILRN  GS  Y  F+  LG
Sbjct: 1601 LLQRSEKLMRELRNVDLQKCRETHKMAVIYVAAGQED-KGSILRNTSGSSTYEMFVSALG 1659

Query: 117  TLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK 176
              I   D +  N FLGGL   G      Y +    ++V++HVAT MP+ +S      K +
Sbjct: 1660 WEI---DLETHNGFLGGLPRQGCGATAPY-YATPFLEVVYHVATRMPS-DSSEAMLLKTR 1714

Query: 177  NIGNDYVTIVYNESGVDYNIRTVKVRLCPV 206
            ++GND V IV++E   DY    +    C V
Sbjct: 1715 HLGNDEVHIVWSEHNRDYRRDILPTEFCDV 1744

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
242017335	1782	tuberin, putative [Pediculus humanus cor	0.826	0.134	0.533	3e-63
328708613	1839	PREDICTED: tuberin-like [Acyrthosiphon p	0.709	0.111	0.593	2e-62
332023061	1823	Tuberin [Acromyrmex echinatior]	0.906	0.143	0.445	5e-59
307180793	1725	Tuberin [Camponotus floridanus]	0.730	0.122	0.526	1e-58
328793583	1815	PREDICTED: tuberin [Apis mellifera]	0.733	0.116	0.515	3e-58
380029021	1823	PREDICTED: LOW QUALITY PROTEIN: tuberin-	0.733	0.116	0.515	3e-58
383848103	1835	PREDICTED: LOW QUALITY PROTEIN: tuberin-	0.733	0.115	0.511	5e-58
350397985	1838	PREDICTED: tuberin-like [Bombus impatien	0.733	0.115	0.511	1e-57
340720815	802	PREDICTED: hypothetical protein LOC10064	0.896	0.322	0.441	1e-57
307197891	1711	Tuberin [Harpegnathos saltator]	0.730	0.123	0.522	3e-57

>gi|242017335|ref|XP_002429145.1| tuberin, putative [Pediculus humanus corporis] gi|212514018|gb|EEB16407.1| tuberin, putative [Pediculus humanus corporis]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/257 (53%), Positives = 174/257 (67%), Gaps = 18/257 (7%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSPA ++++ +  D    K S  R    P R G +PS VFL L+HS  FG T EKPIL+S
Sbjct: 1459 MSPARKSRYDN--DHLKPKLSSPRTKDAP-RSGVSPSFVFLQLYHSAHFGSTEEKPILIS 1515

Query: 61   -NEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
             N   +RAI  LD+IPP+ETHKVGV+YVGPGQ N E EILRN++GS+RY  FLQ LGTLI
Sbjct: 1516 QNSVIQRAILTLDFIPPFETHKVGVIYVGPGQANCEAEILRNEFGSLRYAIFLQSLGTLI 1575

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
             L +ADP + FLGGL  +G DGK+ Y WQD+V QV FHVAT+MP  ESDPNC+ KK +IG
Sbjct: 1576 NLKNADPKSTFLGGLGKSGVDGKFAYIWQDDVTQVTFHVATLMPNKESDPNCHAKKAHIG 1635

Query: 180  NDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY--NIRTVKVRLAGCPCF 237
            ND+VTIVYNESG +YNI+TVK +     +N   V ++  P+D+  N   VKVR       
Sbjct: 1636 NDFVTIVYNESGEEYNIQTVKGQ-----FNYANVIIQ--PLDHATNKVVVKVREE----- 1683

Query: 238  VTDKIDHNSKSVWIHQN 254
            + D+I H+ + +   QN
Sbjct: 1684 LADQIGHSEQKIVSDQN 1700

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708613|ref|XP_001944956.2| PREDICTED: tuberin-like [Acyrthosiphon pisum]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/214 (59%), Positives = 158/214 (73%), Gaps = 9/214 (4%)

Query: 21   SMGRNSREPVRYGSNPSAVFLSLFHSPQFG--GTNEKPILV--SNEQGKRAISNLDWIPP 76
            S    S+EPVR G NPS VFL L+HS  F     + KPIL+  S    ++A+ NLD IPP
Sbjct: 1516 SRANQSKEPVRSGINPSFVFLQLYHSSHFTFVDNDAKPILLPLSQTMIEKAVKNLDRIPP 1575

Query: 77   YETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET 136
            YE HK+GV+YVG GQ NSE +ILRN++GS+RY +FL+ LG+LIKL+D D  +VFLGGLET
Sbjct: 1576 YEVHKIGVIYVGLGQANSEVDILRNRHGSLRYTEFLKCLGSLIKLSDTDSHSVFLGGLET 1635

Query: 137  NGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNI 196
            +G+DGK+TY WQD++MQVIFHVAT+MPT ESD  CNNKKKNIGND+VTIVYNESG +Y+I
Sbjct: 1636 DGNDGKFTYIWQDDIMQVIFHVATLMPTTESDLKCNNKKKNIGNDFVTIVYNESGQEYDI 1695

Query: 197  RTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVKVR 230
            +TVK +     +N   V V+      N  TVKVR
Sbjct: 1696 QTVKGQ-----FNYGCVIVKPLEHGVNQITVKVR 1724

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023061|gb|EGI63326.1| Tuberin [Acromyrmex echinatior]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/294 (44%), Positives = 180/294 (61%), Gaps = 32/294 (10%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSPA +++     D ++++R      +EP R G NPS VFL L+H+  FG T EKP+LV 
Sbjct: 1503 MSPAKKSR-----DWDNIRRGNSPRVKEPPRTGINPSFVFLQLYHAAHFGTTTEKPLLVP 1557

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +RA++NLD I PYETHK+GVLYVG GQ ++E EIL NQ+GS+RY +FL+RLGTL+
Sbjct: 1558 QTTAIQRAVTNLDRIQPYETHKIGVLYVGLGQASNEIEILANQHGSLRYTEFLKRLGTLV 1617

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  N+FLGGL+ NG +G++ Y WQD+V QV FHVAT+MPT  SDP C +KK +IG
Sbjct: 1618 RLKDVDE-NIFLGGLDRNGENGEFAYIWQDDVTQVAFHVATLMPTKASDPKCTSKKTHIG 1676

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRL--------------C 218
            N+YVT++YNES   YNI+TVK       V + P+D+    V V+                
Sbjct: 1677 NNYVTLIYNESDEPYNIQTVKGQFNYACVVIQPLDHGTNQVTVQAREELAEHIGHSEPKI 1736

Query: 219  PVDYNIRTVKVRL---AGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNLPTKL 269
              D N+  +  +L   A     V   + HNS + +   N    L HIK L +++
Sbjct: 1737 ISDQNLAILSRQLALHANLASMVCSSLKHNSHNPYA-SNWLERLRHIKRLRSRV 1789

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180793|gb|EFN68657.1| Tuberin [Camponotus floridanus]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 155/224 (69%), Gaps = 13/224 (5%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSP  +++     + ++++R      ++P R G NPS VFL L+H+  FG T EKP+LV 
Sbjct: 1404 MSPVKKSRG----EWDNMRRGNSPRVKDPPRTGINPSFVFLQLYHAAHFGTTTEKPLLVP 1459

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +RA++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FL RLGTLI
Sbjct: 1460 QTTAIQRAVTNLDRIQPYETHKIGVLYVGPGQASNETEILANQHGSLRYTEFLHRLGTLI 1519

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  NVFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK +IG
Sbjct: 1520 RLKDVDE-NVFLGGLDRNGENGDFAYIWQDDVTQVAFHVATLMPTKASDPKCTSKKTHIG 1578

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVR 216
            N+YVT+VYNES   YNI+TVK       V + P+D+    V V+
Sbjct: 1579 NNYVTLVYNESDEAYNIQTVKGQFNYACVVIQPLDHGTNQVTVQ 1622

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793583|ref|XP_395739.4| PREDICTED: tuberin [Apis mellifera]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 158/225 (70%), Gaps = 13/225 (5%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSP  +++     + ++++R      +E  + G NPS VFL L+H+  FG  +EKP+LV 
Sbjct: 1494 MSPVKKSRG----EWDNIRRGNSPRIKETPKTGINPSFVFLQLYHTAHFGSPSEKPLLVP 1549

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +RA++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FLQRLGTL+
Sbjct: 1550 QTTAVQRAVTNLDRIQPYETHKIGVLYVGPGQASNETEILANQHGSLRYTEFLQRLGTLV 1609

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  +VFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK++IG
Sbjct: 1610 RLKDVDE-SVFLGGLDRNGENGNFAYIWQDDVTQVAFHVATLMPTKLSDPKCTSKKQHIG 1668

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRL 217
            N+YVT+VYNESG  YNI+TVK       V + P+D+    V V++
Sbjct: 1669 NNYVTVVYNESGESYNIQTVKGQFNYACVVIQPLDHGTNQVTVQV 1713

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029021|ref|XP_003698181.1| PREDICTED: LOW QUALITY PROTEIN: tuberin-like [Apis florea]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 158/225 (70%), Gaps = 13/225 (5%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSP  +++     + ++++R      +E  + G NPS VFL L+H+  FG  +EKP+LV 
Sbjct: 1503 MSPVKKSRG----EWDNIRRGNSPRIKETPKTGINPSFVFLQLYHTAHFGSPSEKPLLVP 1558

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +RA++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FLQRLGTL+
Sbjct: 1559 QTTAVQRAVTNLDRIQPYETHKIGVLYVGPGQASNETEILANQHGSLRYTEFLQRLGTLV 1618

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  +VFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK++IG
Sbjct: 1619 RLKDVDE-SVFLGGLDRNGENGNFAYIWQDDVTQVAFHVATLMPTKLSDPKCTSKKQHIG 1677

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRL 217
            N+YVT+VYNESG  YNI+TVK       V + P+D+    V V++
Sbjct: 1678 NNYVTVVYNESGESYNIQTVKGQFNYACVVIQPLDHGTNQVTVQV 1722

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848103|ref|XP_003699691.1| PREDICTED: LOW QUALITY PROTEIN: tuberin-like [Megachile rotundata]

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 158/225 (70%), Gaps = 13/225 (5%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSP  +++     + ++++R      ++  + G NPS VFL L+H+  FG  +EKP+LV 
Sbjct: 1514 MSPVKKSRG----EWDNIRRGNSPRVKDTPKTGINPSFVFLQLYHTAHFGSPSEKPLLVP 1569

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +RA++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FLQRLGTL+
Sbjct: 1570 QTTAVQRAVTNLDRIQPYETHKIGVLYVGPGQASNEIEILANQHGSLRYTEFLQRLGTLV 1629

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  +VFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK++IG
Sbjct: 1630 RLKDVDE-SVFLGGLDRNGENGNFAYIWQDDVTQVAFHVATLMPTKASDPKCTSKKQHIG 1688

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRL 217
            N+YVT+VYNESG  YNI+TVK       V + P+D+    V V++
Sbjct: 1689 NNYVTVVYNESGESYNIQTVKGQFNYACVVIQPLDHGTNQVTVQV 1733

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397985|ref|XP_003485052.1| PREDICTED: tuberin-like [Bombus impatiens]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 157/225 (69%), Gaps = 13/225 (5%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSP  +++     + ++++R      +E  +   NPS VFL L+H+  FG  +EKP+LV 
Sbjct: 1518 MSPVKKSRG----EWDNIRRGNSPRVKETPKTSINPSFVFLQLYHTAHFGSPSEKPLLVP 1573

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +RA++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FLQRLGTL+
Sbjct: 1574 QTTAVQRAVTNLDRIQPYETHKIGVLYVGPGQASNETEILANQHGSLRYTEFLQRLGTLV 1633

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  +VFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK++IG
Sbjct: 1634 RLKDVDE-SVFLGGLDRNGENGNFAYIWQDDVTQVAFHVATLMPTKLSDPKCTSKKQHIG 1692

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRL 217
            N+YVT+VYNESG  YNI+TVK       V + P+D+    V V++
Sbjct: 1693 NNYVTVVYNESGEPYNIQTVKGQFNYACVVIQPLDHGTNQVTVQV 1737

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720815|ref|XP_003398825.1| PREDICTED: hypothetical protein LOC100644214, partial [Bombus terrestris]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/290 (44%), Positives = 178/290 (61%), Gaps = 31/290 (10%)

Query: 1   MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
           MSP  +++     + ++++R      +E  +   NPS VFL L+H+  FG  +EKP+LV 
Sbjct: 482 MSPVKKSRG----EWDNIRRGNSPRVKETPKTSINPSFVFLQLYHTAHFGSPSEKPLLVP 537

Query: 61  NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                +RA++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FLQRLGTL+
Sbjct: 538 QTTAVQRAVTNLDRIQPYETHKIGVLYVGPGQASNETEILANQHGSLRYTEFLQRLGTLV 597

Query: 120 KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
           +L D D  +VFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK++IG
Sbjct: 598 RLKDVDE-SVFLGGLDRNGENGNFAYIWQDDVTQVAFHVATLMPTKLSDPKCTSKKQHIG 656

Query: 180 NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCP------------- 219
           N+YVT+VYNESG  YNI+TVK       V + P+D+    V V++               
Sbjct: 657 NNYVTVVYNESGEPYNIQTVKGQFNYACVVIQPLDHGTNQVTVQVKEELVKHIRHSEPKI 716

Query: 220 -VDYNIRTVKVRL---AGCPCFVTDKIDHNSKSVWIHQNPFSYLEHIKNL 265
             D N+  +  +L   A     V+  ++ NS + +   N    L HIK L
Sbjct: 717 ISDQNLAILSRQLALHANLASMVSSSLEQNSHNPYA-SNWLERLRHIKRL 765

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197891|gb|EFN78990.1| Tuberin [Harpegnathos saltator]

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 157/226 (69%), Gaps = 15/226 (6%)

Query: 1    MSPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVS 60
            MSP  +++     + ++++R      ++P R G NPS VFL L+H+  FG T EKP+LV 
Sbjct: 1390 MSPVKKSRG----EWDNMRRGNSPRVKDPPRTGINPSFVFLQLYHAAHFGITTEKPLLVP 1445

Query: 61   NEQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
                 +R ++NLD I PYETHK+GVLYVGPGQ ++E EIL NQ+GS+RY +FL+RLGTL+
Sbjct: 1446 QTTAIQRVVTNLDRIQPYETHKIGVLYVGPGQASNETEILANQHGSLRYTEFLKRLGTLV 1505

Query: 120  KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
            +L D D  NVFLGGL+ NG +G + Y WQD+V QV FHVAT+MPT  SDP C +KK +IG
Sbjct: 1506 RLKDVDE-NVFLGGLDRNGENGDFAYIWQDDVTQVAFHVATLMPTKVSDPKCTSKKTHIG 1564

Query: 180  NDYVTIVYNESGVDYNIRTVK-------VRLCPVDY--NIRTVKVR 216
            N+YVT+VYNES   YNI+TVK       V + P+D+  N  TV+ R
Sbjct: 1565 NNYVTLVYNESDEPYNIQTVKGQFNYACVVIQPLDHGTNQLTVQAR 1610

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
UNIPROTKB|E1BNT2	1814	TSC2 "Uncharacterized protein"	0.944	0.150	0.406	7.6e-52
UNIPROTKB|H3BQK4	535	TSC2 "Tuberin" [Homo sapiens (	0.958	0.517	0.408	1.2e-51
UNIPROTKB|J9NXS0	1746	TSC2 "Uncharacterized protein"	0.944	0.156	0.4	8.2e-51
UNIPROTKB|F1P0G2	1769	TSC2 "Uncharacterized protein"	0.948	0.154	0.395	2.2e-50
UNIPROTKB|F1NGI4	1835	TSC2 "Uncharacterized protein"	0.948	0.149	0.395	2.4e-50
UNIPROTKB|B4DIL8	1692	TSC2 "cDNA FLJ59538, highly si	0.958	0.163	0.408	3.4e-50
UNIPROTKB|H3BMQ0	1751	TSC2 "Tuberin" [Homo sapiens (	0.958	0.158	0.408	3.6e-50
UNIPROTKB|P49815	1807	TSC2 "Tuberin" [Homo sapiens (	0.958	0.153	0.408	3.8e-50
UNIPROTKB|O42180	1782	TSC2 "Putative uncharacterized	0.937	0.152	0.416	6.1e-50
RGD|3908	1809	Tsc2 "tuberous sclerosis 2" [R	0.937	0.149	0.404	6.2e-50

UNIPROTKB|E1BNT2 TSC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 552 (199.4 bits), Expect = 7.6e-52, P = 7.6e-52
 Identities = 118/290 (40%), Positives = 178/290 (61%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +++ ++ K   G ++ E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct:  1474 APSRRGK---RVERDAFKNRAGTSNTEKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 1529

Query:    62 EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
             E  +R++  LD IP Y+THK+ VLYVG GQ NSE  IL N++GS RY +FL  LG LI+L
Sbjct:  1530 ESFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGKLIEL 1589

Query:   122 TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
              D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++GND
Sbjct:  1590 KDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGND 1649

Query:   182 YVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGC 234
             +V+IVYN+SG D+ + T+K       V + P+DY    V ++ C  D     V   +A  
Sbjct:  1650 FVSIVYNDSGEDFKLGTIKGQFNFVHVIITPLDYECNLVSLQ-CRKDME-GLVDTSMAK- 1706

Query:   235 PCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
                V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR
Sbjct:  1707 --IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKR 1754

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0043491 "protein kinase B signaling cascade" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|H3BQK4 TSC2 "Tuberin" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 122/299 (40%), Positives = 180/299 (60%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +  L+S  R+   N+ E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct:   195 APSRRGKRVERDALKS--RATASNA-EKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 250

Query:    62 EQG--KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
             E    +R++  LD IP Y+THK+ VLYVG GQ NSE  IL N++GS RY +FL  LG LI
Sbjct:   251 ESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLI 310

Query:   120 KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
             +L D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++G
Sbjct:   311 ELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLG 370

Query:   180 NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLA 232
             ND+V+IVYN+SG D+ + T+K       V + P+DY    V ++ C  D     V   +A
Sbjct:   371 NDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQ-CRKDME-GLVDTSVA 428

Query:   233 GCPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR---SLCE 287
                  V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR    +CE
Sbjct:   429 K---IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICE 484

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9NXS0 TSC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 542 (195.9 bits), Expect = 8.2e-51, P = 8.2e-51
 Identities = 116/290 (40%), Positives = 178/290 (61%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +++ ++ +   G ++ E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct:  1406 APSRRGK---RVERDAFRSRAGASNTEKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 1461

Query:    62 EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
             E  +R++  LD IP Y+THK+ VLYVG GQ +SE  IL N++GS RY +FL  LG LI+L
Sbjct:  1462 ESFERSVQLLDQIPSYDTHKIAVLYVGEGQSSSELAILSNEHGSYRYTEFLTGLGKLIEL 1521

Query:   122 TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
              D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT E D +  +KK+++GND
Sbjct:  1522 KDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKEVDKHRCDKKRHLGND 1581

Query:   182 YVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLAGC 234
             +V+IVYN+SG D+ + T++       V + P+DY    V ++ C  D     V   +A  
Sbjct:  1582 FVSIVYNDSGEDFKLGTIRGQFNFVHVIITPLDYECNLVSLQ-CRKDME-GLVDTSVAK- 1638

Query:   235 PCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
                V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR
Sbjct:  1639 --IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKR 1686

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|F1P0G2 TSC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 538 (194.4 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 115/291 (39%), Positives = 177/291 (60%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +++ ++ K      + E V  G NPS VFL L+HSP FG  N KP+L+ N
Sbjct:  1428 APSRRGK---RMERDAFKSRTAATNAEKVP-GINPSFVFLQLYHSPFFGDENNKPLLLPN 1483

Query:    62 EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
             E  ++++  LD IP Y+THK+ VLYVG GQ N+E  IL N++GS RY +FL  LG LI+L
Sbjct:  1484 ETFEKSVQLLDQIPSYDTHKIAVLYVGEGQSNNEIAILSNEHGSYRYTEFLTGLGKLIEL 1543

Query:   122 TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
              D  P  ++LGGL+  G DG++TY W D++MQ IFH+AT+MPT + D    +KK+++GND
Sbjct:  1544 KDCQPDKIYLGGLDVCGEDGQFTYCWHDDIMQAIFHIATLMPTKDLDKYRCDKKRHLGND 1603

Query:   182 YVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIR-TVKVRLAG 233
             +V+IVYN+SG D+ + T+K       V + P+DY+   V ++ C  D ++   V   +A 
Sbjct:  1604 FVSIVYNDSGEDFKLGTIKGQFNFVHVIITPLDYDCNLVTLQ-CRKDEDMEGLVDTSVAK 1662

Query:   234 CPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
                 ++DK +   ++ + +H N  S + H ++ PT    S  +     +KR
Sbjct:  1663 ---IISDKNLPFVARQMALHANMASQVHHSRSNPTDTYPSKWIARLRHIKR 1710

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1NGI4 TSC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 538 (194.4 bits), Expect = 2.4e-50, P = 2.4e-50
 Identities = 115/291 (39%), Positives = 177/291 (60%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +++ ++ K      + E V  G NPS VFL L+HSP FG  N KP+L+ N
Sbjct:  1494 APSRRGK---RMERDAFKSRTAATNAEKVP-GINPSFVFLQLYHSPFFGDENNKPLLLPN 1549

Query:    62 EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
             E  ++++  LD IP Y+THK+ VLYVG GQ N+E  IL N++GS RY +FL  LG LI+L
Sbjct:  1550 ETFEKSVQLLDQIPSYDTHKIAVLYVGEGQSNNEIAILSNEHGSYRYTEFLTGLGKLIEL 1609

Query:   122 TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
              D  P  ++LGGL+  G DG++TY W D++MQ IFH+AT+MPT + D    +KK+++GND
Sbjct:  1610 KDCQPDKIYLGGLDVCGEDGQFTYCWHDDIMQAIFHIATLMPTKDLDKYRCDKKRHLGND 1669

Query:   182 YVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIR-TVKVRLAG 233
             +V+IVYN+SG D+ + T+K       V + P+DY+   V ++ C  D ++   V   +A 
Sbjct:  1670 FVSIVYNDSGEDFKLGTIKGQFNFVHVIITPLDYDCNLVTLQ-CRKDEDMEGLVDTSVAK 1728

Query:   234 CPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
                 ++DK +   ++ + +H N  S + H ++ PT    S  +     +KR
Sbjct:  1729 ---IISDKNLPFVARQMALHANMASQVHHSRSNPTDTYPSKWIARLRHIKR 1776

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043491 "protein kinase B signaling cascade" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

UNIPROTKB|B4DIL8 TSC2 "cDNA FLJ59538, highly similar to Tuberin" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 3.4e-50, P = 3.4e-50
 Identities = 122/299 (40%), Positives = 180/299 (60%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +  L+S  R+   N+ E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct:  1352 APSRRGKRVERDALKS--RATASNA-EKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 1407

Query:    62 EQG--KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
             E    +R++  LD IP Y+THK+ VLYVG GQ NSE  IL N++GS RY +FL  LG LI
Sbjct:  1408 ESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLI 1467

Query:   120 KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
             +L D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++G
Sbjct:  1468 ELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLG 1527

Query:   180 NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLA 232
             ND+V+IVYN+SG D+ + T+K       V + P+DY    V ++ C  D     V   +A
Sbjct:  1528 NDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQ-CRKDME-GLVDTSVA 1585

Query:   233 GCPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR---SLCE 287
                  V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR    +CE
Sbjct:  1586 K---IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICE 1641

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H3BMQ0 TSC2 "Tuberin" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 122/299 (40%), Positives = 180/299 (60%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +  L+S  R+   N+ E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct:  1411 APSRRGKRVERDALKS--RATASNA-EKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 1466

Query:    62 EQG--KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
             E    +R++  LD IP Y+THK+ VLYVG GQ NSE  IL N++GS RY +FL  LG LI
Sbjct:  1467 ESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLI 1526

Query:   120 KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
             +L D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++G
Sbjct:  1527 ELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLG 1586

Query:   180 NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLA 232
             ND+V+IVYN+SG D+ + T+K       V + P+DY    V ++ C  D     V   +A
Sbjct:  1587 NDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQ-CRKDME-GLVDTSVA 1644

Query:   233 GCPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR---SLCE 287
                  V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR    +CE
Sbjct:  1645 K---IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICE 1700

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P49815 TSC2 "Tuberin" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 3.8e-50, P = 3.8e-50
 Identities = 122/299 (40%), Positives = 180/299 (60%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +  L+S  R+   N+ E V  G NPS VFL L+HSP FG  + KPIL+ N
Sbjct:  1467 APSRRGKRVERDALKS--RATASNA-EKVP-GINPSFVFLQLYHSPFFGDESNKPILLPN 1522

Query:    62 EQG--KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLI 119
             E    +R++  LD IP Y+THK+ VLYVG GQ NSE  IL N++GS RY +FL  LG LI
Sbjct:  1523 ESQSFERSVQLLDQIPSYDTHKIAVLYVGEGQSNSELAILSNEHGSYRYTEFLTGLGRLI 1582

Query:   120 KLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIG 179
             +L D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++G
Sbjct:  1583 ELKDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLG 1642

Query:   180 NDYVTIVYNESGVDYNIRTVK-------VRLCPVDYNIRTVKVRLCPVDYNIRTVKVRLA 232
             ND+V+IVYN+SG D+ + T+K       V + P+DY    V ++ C  D     V   +A
Sbjct:  1643 NDFVSIVYNDSGEDFKLGTIKGQFNFVHVIVTPLDYECNLVSLQ-CRKDME-GLVDTSVA 1700

Query:   233 GCPCFVTDK-IDHNSKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR---SLCE 287
                  V+D+ +   ++ + +H N  S + H ++ PT +  S  +     +KR    +CE
Sbjct:  1701 K---IVSDRNLPFVARQMALHANMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRICE 1756

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0006953 "acute-phase response" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043407 "negative regulation of MAP kinase activity" evidence=IEA

GO:0044430 "cytoskeletal part" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISS;IBA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IBA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IBA

GO:0043491 "protein kinase B signaling cascade" evidence=ISS;IBA

GO:0045792 "negative regulation of cell size" evidence=IBA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISS;IBA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=ISS;IBA

GO:0051726 "regulation of cell cycle" evidence=IBA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005096 "GTPase activator activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0033596 "TSC1-TSC2 complex" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0001843 "neural tube closure" evidence=ISS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=ISS

GO:0030100 "regulation of endocytosis" evidence=ISS

GO:0050918 "positive chemotaxis" evidence=ISS

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=ISS

GO:0019902 "phosphatase binding" evidence=IDA

GO:0006897 "endocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

UNIPROTKB|O42180 TSC2 "Putative uncharacterized protein TSC2" [Takifugu rubripes (taxid:31033)]

 Score = 534 (193.0 bits), Expect = 6.1e-50, P = 6.1e-50
 Identities = 122/293 (41%), Positives = 172/293 (58%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R +   + D +S     G  + E +  G +PS VFL L+HSP FG    KP+L+  
Sbjct:  1442 APSRRER---RTDRDSYHSRSGPGNTEKIA-GLSPSFVFLQLYHSPFFGNEANKPLLLPK 1497

Query:    62 EQG-KRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIK 120
              Q   RA+  LD +PPY+THK+GV++VG GQ N+E  IL N+YGS RY  FL  LG LI 
Sbjct:  1498 TQVIDRAVKVLDQMPPYDTHKIGVVFVGAGQVNNEVAILSNEYGSNRYAAFLTGLGKLIH 1557

Query:   121 LTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGN 180
             L D DP  +FLGGL+  G DG++TY W D++MQ IFH+AT+MP  ESD  C NKK++IGN
Sbjct:  1558 LKDCDPDQIFLGGLDQYGDDGEFTYCWHDDIMQAIFHIATLMPNRESDKGCCNKKRHIGN 1617

Query:   181 DYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY--NIRTVKVR--LAGCPC 236
             D+V +VYN+SG +Y + T+K +     +N   V+V + P+DY  N+ T++ R  L G   
Sbjct:  1618 DFVIVVYNDSGEEYKLGTIKGQ-----FNF--VEVIIKPLDYECNLVTLQCRKDLEGLVD 1670

Query:   237 FVTDKI--DHNS----KSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
                 KI  D N     + + +H N  S +   +  P+    S  L     +KR
Sbjct:  1671 TTVTKIVSDRNLPLLVRQMALHANMASLVHQFRANPSDAYASKWLARLRHIKR 1723

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0008285 "negative regulation of cell proliferation" evidence=IBA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IBA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IBA

GO:0033596 "TSC1-TSC2 complex" evidence=IBA

GO:0043491 "protein kinase B signaling cascade" evidence=IBA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

GO:0045792 "negative regulation of cell size" evidence=IBA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IBA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IBA

GO:0051726 "regulation of cell cycle" evidence=IBA

RGD|3908 Tsc2 "tuberous sclerosis 2" [Rattus norvegicus (taxid:10116)]

 Score = 534 (193.0 bits), Expect = 6.2e-50, P = 6.2e-50
 Identities = 118/292 (40%), Positives = 179/292 (61%)

Query:     2 SPAHRNKHFHKLDLESVKRSMGRNSREPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSN 61
             +P+ R K   +++ ++ K     +S E V  G NPS VFL L+HSP  G  + KPIL+ N
Sbjct:  1471 APSRRGK---RVERDNFKSRTAASSAEKVP-GINPSFVFLQLYHSPFCGDESNKPILLPN 1526

Query:    62 EQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKL 121
             E  +R++  LD IP Y+THK+ VLYVG GQ +SE  IL N++GS RY +FL  LG LI+L
Sbjct:  1527 ESFERSVQLLDQIPSYDTHKIAVLYVGEGQSSSELAILSNEHGSYRYTEFLTGLGRLIEL 1586

Query:   122 TDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
              D  P  V+LGGL+  G DG++TY W D++MQ +FH+AT+MPT + D +  +KK+++GND
Sbjct:  1587 KDCQPDKVYLGGLDVCGEDGQFTYCWHDDIMQAVFHIATLMPTKDVDKHRCDKKRHLGND 1646

Query:   182 YVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY--NIRTVKVR--LAGCPCF 237
             +V+I+YN+SG D+ + T+K +     +N   V V + P+DY  N+ T++ R  + G    
Sbjct:  1647 FVSIIYNDSGEDFKLGTIKGQ-----FNF--VHVIITPLDYKCNLLTLQCRKDMEGLVDT 1699

Query:   238 VTDKI--DHN----SKSVWIHQNPFSYLEHIKNLPTKLQLSSCLGSEDKVKR 283
                KI  D N    ++ + +H N  S + H ++ PT +  S  +     +KR
Sbjct:  1700 SVAKIVSDRNLSFVARQMALHANMASQVHHRRSNPTDIYPSKWIARLRHIKR 1751

GO:0001666 "response to hypoxia" evidence=IEA;ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0005096 "GTPase activator activity" evidence=IEA;ISO;IDA

GO:0005097 "Rab GTPase activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO;IBA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005901 "caveola" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006606 "protein import into nucleus" evidence=IEA;ISO

GO:0006953 "acute-phase response" evidence=IMP

GO:0007165 "signal transduction" evidence=IDA

GO:0007507 "heart development" evidence=IEA;ISO

GO:0008104 "protein localization" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;IMP

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA;ISO

GO:0014067 "negative regulation of phosphatidylinositol 3-kinase cascade" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO;ISS

GO:0030030 "cell projection organization" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IEA;ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA;ISO;IDA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=TAS

GO:0033596 "TSC1-TSC2 complex" evidence=IEA;ISO;IBA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0043407 "negative regulation of MAP kinase activity" evidence=IMP

GO:0043491 "protein kinase B signaling cascade" evidence=ISO;IBA

GO:0044430 "cytoskeletal part" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISO;IBA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=ISO;IBA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IDA

GO:0050918 "positive chemotaxis" evidence=IEA;ISO

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IMP;IDA

GO:0051291 "protein heterooligomerization" evidence=IMP;IDA

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA;ISO

GO:0071889 "14-3-3 protein binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	289
pfam02145	187	pfam02145, Rap_GAP, Rap/ran-GAP	4e-37

>gnl|CDD|216901 pfam02145, Rap_GAP, Rap/ran-GAP

 Score =  130 bits (328), Expect = 4e-37
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 4/104 (3%)

Query: 98  ILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET-NGSDGKYTYSWQDEVMQVIF 156
           IL N  GS  + DFL  LG  ++L        + GGL+T N S G+Y+  W+D   +++F
Sbjct: 1   ILSNNEGSPAFDDFLSSLGDKVRLKGH---KGYRGGLDTKNDSTGEYSIYWRDRDTEIMF 57

Query: 157 HVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVK 200
           HV+TMMPT ++DP    KK++IGND V I++NESG+ +N  T+K
Sbjct: 58  HVSTMMPTNDNDPQQLEKKRHIGNDIVNIIFNESGLPFNPNTIK 101

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG3687|consensus	1697		100.0
PF02145	188	Rap_GAP: Rap/ran-GAP; InterPro: IPR000331 The Rap/	100.0
KOG3686|consensus	740		100.0
KOG3652|consensus	1215		98.39

>KOG3687|consensus

Probab=100.00  E-value=3.6e-68  Score=546.31  Aligned_cols=241  Identities=46%  Similarity=0.799  Sum_probs=223.3

Q ss_pred             CCCCccccCchHHHHhhhcCCCCCCCCCcceecCchH--HHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCC
Q psy15181         27 REPVRYGSNPSAVFLSLFHSPQFGGTNEKPILVSNEQ--GKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYG  104 (289)
Q Consensus        27 ~~~~~~~~~Ps~~~lql~~~~~~~~~~~~pi~lp~~~--~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~g  104 (289)
                      ..++-++++|||+|+|+|+++++|..+++|+++|++.  |.||++.||++|++|+||+||+|||.||.++|.+||+|++|
T Consensus      1391 ~~~~~p~~npsf~F~qly~~p~~g~~~n~PLllp~e~~s~~rAVSl~D~iP~~EthKiGvlYVG~gQ~n~E~~IL~N~hg 1470 (1697)
T KOG3687|consen 1391 NAEKVPGINPSFVFLQLYHSPFFGDESNKPLLLPNESQSFERAVSLLDQIPSYETHKIGVLYVGEGQSNSELAILSNEHG 1470 (1697)
T ss_pred             cCCCCCCCCcchhhHhhhcCcccccccCCceecCCcchhHHHHHHHHHhCCccccceeeEEEEcccccccHHHHHhcCCc
Confidence            3344556999999999999999999999999999986  99999999999999999999999999999899999999999


Q ss_pred             ChhHHHHHHhcCCeEEcCCCCCCCccccCCCCCCCCccEEEEeecCceeEEEEEcccCCC-CCCCcchhhhhcccCCCeE
Q psy15181        105 SIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNGSDGKYTYSWQDEVMQVIFHVATMMPT-LESDPNCNNKKKNIGNDYV  183 (289)
Q Consensus       105 S~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~~~dG~~t~y~~d~~~EI~FHVaTlMP~-~~~D~q~~~KKRHIGND~V  183 (289)
                      |.+|.+||.+||++|+||+++ .+.|.||||++|.||.|+|+|.|+++|++||||||||+ .++||.|.+||||||||||
T Consensus      1471 S~ry~eFL~glGTL~eLK~~q-~~~~~ggLDR~g~DG~FAYcWKDdI~Q~vFH~aTlMPTN~~dDP~C~~KKrHIGNDFV 1549 (1697)
T KOG3687|consen 1471 SYRYTEFLTGLGTLIELKDCQ-PDVYLGGLDRCGEDGQFAYCWKDDIMQAVFHIATLMPTNDVDDPRCDKKKRHIGNDFV 1549 (1697)
T ss_pred             cHHHHHHHhCcceEEEecccc-ccceeeeecccCCCCceEEEehhhhHHHhhhhhhccccccccCCCCchhhhhcCCceE
Confidence            999999999999999999984 57799999999999999999999999999999999998 7789999999999999999


Q ss_pred             EEEEeCCCCccccccccccCCCcccceeeeEEEEEeecCC--eEEEEEecCC-------Ccccccch----------hhh
Q psy15181        184 TIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYN--IRTVKVRLAG-------CPCFVTDK----------IDH  244 (289)
Q Consensus       184 ~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~~--~v~V~~r~~g-------~~~ivs~~----------l~a  244 (289)
                      .|||||||.+|+.+||++|     ||||  +|||+|++.+  ++.+++|++-       .+|||||.          |||
T Consensus      1550 ~IIyNESGeEY~l~TI~gQ-----FNfv--~VIVtPld~~~nRv~~q~r~~~~KFv~~~~YkIVSdr~lP~~aRqmaLhA 1622 (1697)
T KOG3687|consen 1550 SIIYNESGEEYKLGTIKGQ-----FNFV--HVIVTPLDYECNRVSLQCRKDMEKFVDTSVYKIVSDRNLPFVARQMALHA 1622 (1697)
T ss_pred             EEEecCCccccccCccccc-----cceE--EEEeccchhhhhHHHHHHHHHHHhheeeeeEEEecCCcchHHHHHHHHHH
Confidence            9999999999999999999     9999  9999999988  9999999882       28999998          899


Q ss_pred             ccchhhhhc---------CchhhHHHHhhhhhhhhhhccc
Q psy15181        245 NSKSVWIHQ---------NPFSYLEHIKNLPTKLQLSSCL  275 (289)
Q Consensus       245 ~~as~~~~~---------~~~~Rlr~ik~lr~r~~~~~~~  275 (289)
                      |+||+..|+         .|.+|||++||||+|+.++..-
T Consensus      1623 n~aS~VYhs~~~~~~Y~s~W~ERLR~LKRLR~K~~e~~~~ 1662 (1697)
T KOG3687|consen 1623 NMASQVYHSSNPTDIYPSKWIERLRHLKRLRQKICEEAAY 1662 (1697)
T ss_pred             HHHHHHHhccCcCCcchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999995333         1669999999999999876543

>PF02145 Rap_GAP: Rap/ran-GAP; InterPro: IPR000331 The Rap/ran-GAP domain is found in the GTPase activating protein (GAP) responsible for the activation of nuclear Ras-related regulatory proteins Rap1, Rsr1 and Ran in vitro converting it to the putatively inactive GDP-bound state [, ]

Probab=100.00  E-value=2e-48  Score=344.13  Aligned_cols=157  Identities=34%  Similarity=0.552  Sum_probs=105.5

Q ss_pred             hhhCCCCChhHHHHHHhcCCeEEcCCCCCCCccccCCCCCC-CCccEEEEeecCceeEEEEEcccCCCCCCCcchhhhhc
Q psy15181         98 ILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLETNG-SDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKK  176 (289)
Q Consensus        98 ILsN~~gS~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~~-~dG~~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKR  176 (289)
                      ||+|++||++|++||++|||+|+|++   |.||.||||+.+ ++|+|+|||+++..|||||||||||+.++|+||.+|||
T Consensus         1 il~N~~~S~~f~~Fl~~LG~~V~L~~---~~~y~GGLD~~~~~~G~~s~y~~~~~~EimFHVstlmP~~~~d~q~~~KKr   77 (188)
T PF02145_consen    1 ILSNTEGSPRFEEFLSSLGWKVDLKG---HKGYSGGLDTKNDTTGEYSYYYADDIYEIMFHVSTLMPNNENDPQQLEKKR   77 (188)
T ss_dssp             HHT--S--HHHHHHHHHHSEEEESTT-----S--TT--SSS-TT-SEEEEEESSS-EEEEEECCCS---TT-SSSHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHhCCEEEcCC---CcCcCCCCCccccCCCCEEEEEEeCCEEEEEEecccCCCCCCChHHHHHHH
Confidence            79999999999999999999999998   579999999854 69999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEEeCCCCccccccccccCCCcccceeeeEEEEEeecCC-------eEEEEEecC----C---Ccccccch-
Q psy15181        177 NIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYN-------IRTVKVRLA----G---CPCFVTDK-  241 (289)
Q Consensus       177 HIGND~V~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~~-------~v~V~~r~~----g---~~~ivs~~-  241 (289)
                      |||||+|+|||+|++++|+|++|+||     ||||  +|||+|+.++       +|.|..|++    |   ...+|+++ 
T Consensus        78 hIGND~V~IVf~E~~~~y~~~~i~Sq-----Fn~V--~IvI~p~~~~~~~~~~y~V~v~~k~~v~~fgP~~~~~~v~~~~  150 (188)
T PF02145_consen   78 HIGNDIVVIVFNESGQPYDPSTIKSQ-----FNHV--FIVIYPLSNGSSKSPLYRVSVVRKDDVPPFGPLLPESIVSKKS  150 (188)
T ss_dssp             HHTT-SEEEEEESS-----GGGS--S-----S--E--EEEEEEES--SSSS-EEEEEEEE-TTS---SS---SS-EEESH
T ss_pred             HhcCCEEEEEEeCCCCccChhhcccc-----CceE--EEEEEecccCCCCCceEEEEEEEcCCCCCcCCCCCCCeECHHH
Confidence            99999999999999999999999999     9999  9999999876       455555655    3   25667766 


Q ss_pred             ---------hhhccchhhhh-----cCchhhH-HHHhhh
Q psy15181        242 ---------IDHNSKSVWIH-----QNPFSYL-EHIKNL  265 (289)
Q Consensus       242 ---------l~a~~as~~~~-----~~~~~Rl-r~ik~l  265 (289)
                               |+|+.|+. .+     +.+.+|+ ++||+|
T Consensus       151 l~~~vr~~~ina~~a~~-~~~~~f~~~~~~~r~~~i~~i  188 (188)
T PF02145_consen  151 LPEFVRQKAINAERAAR-SSQPQFASPWRRRRQRLIKDI  188 (188)
T ss_dssp             HHHHHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHH-HHhHHhhhHHHHHHHHHhccC
Confidence                     56665555 22     1123444 777765

Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. RanGAP is a leucine rich repeat containing protein which forms a highly curved crescent. Each LRR forms a short beta-strand and a longer alpha-helix that results in a beta-alpha hairpin motif []. The domain is also present in tuberin (a tuberous sclerosis homologue protein) that specifically stimulates the intrinsic GTPase activity of Ras-related protein Rap1A suggesting a possible mechanism for its role in the regulation of cellular growth.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 1SRQ_C 3BRW_B.

>KOG3686|consensus

Probab=100.00  E-value=2.9e-42  Score=351.86  Aligned_cols=200  Identities=30%  Similarity=0.444  Sum_probs=168.7

Q ss_pred             HHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCCChhHHHHHHhcCCeEEcCCCCCCCccccCCCC-CCCCcc
Q psy15181         64 GKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET-NGSDGK  142 (289)
Q Consensus        64 ~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~gS~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~-~~~dG~  142 (289)
                      +.++|..||+...+.+|||||+||+.||+ +|+||++|+.|||+|.+||++|||.|+||||   .||.||||+ ++++|.
T Consensus       247 ~~~~l~~lDe~~~~~~~K~gIly~k~GQ~-teEem~~Ne~~sPaF~eFL~~LGq~V~Lkgf---~gyrggLdtk~dsTG~  322 (740)
T KOG3686|consen  247 VERALVILDEQVISITHKFGILYVKTGQK-TEEEMYNNERGSPAFEEFLALLGQFVSLKGF---QGYRGGLDTKNDSTGT  322 (740)
T ss_pred             HHHHHHhhhhhhheeeeeEEEEEecccCc-cHHHHhcCCccChhHHHHHHHhhceeeccch---HHHhhhhcccCCCCCc
Confidence            89999999999999999999999999998 6999999999999999999999999999995   799999995 789999


Q ss_pred             EEEEeecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccccCCCcccceeeeEEEEEeecC
Q psy15181        143 YTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDY  222 (289)
Q Consensus       143 ~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq~~p~~Fn~v~~~IVI~P~~~  222 (289)
                      .+.||.....||||||+||||+.++|+||..||||||||+|.|||.|.+.||.|++|+|+     |.||  +|||+|+..
T Consensus       323 ~svY~~~~~~EImFHvst~lp~~~~d~qq~~r~rHignDiV~ivfqe~~~pf~p~~i~Sh-----F~hv--f~~v~~~~~  395 (740)
T KOG3686|consen  323 TSIYTQYQKLEIMFHVSTMLPYTDGDPQQLQRKRHIGNDIVTIVFQEEGTPFSPGTIRSH-----FQHV--FIVVRPHGP  395 (740)
T ss_pred             eeeEEeecceEEEEecCccCCCCCCCHHHhccccccCcceEEEEeecCCCCCCCccchhc-----ccee--EEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999999     9999  999999984


Q ss_pred             C------eEEEEEecC----CC----c-ccccchhhhc--cchhhhhcCc-------------hhhHHHHhhhhhhhhhh
Q psy15181        223 N------IRTVKVRLA----GC----P-CFVTDKIDHN--SKSVWIHQNP-------------FSYLEHIKNLPTKLQLS  272 (289)
Q Consensus       223 ~------~v~V~~r~~----g~----~-~ivs~~l~a~--~as~~~~~~~-------------~~Rlr~ik~lr~r~~~~  272 (289)
                      +      ++.|..+++    |.    + .+...+...+  +|.+ |++.+             +.|-.-++-|-+++...
T Consensus       396 ~t~~~~y~~~it~~~~vp~fgp~l~~~~vf~~~~~f~~fLlak~-INae~A~~~s~kf~~~~~rtR~~lL~~L~e~~~~~  474 (740)
T KOG3686|consen  396 CTENVKYRVAITSKDDVPFFGPPLPTGDVFKKGTVFRNFLLAKA-INAERAAGESIKFLQMADRTRDDLLDDLPENLVPS  474 (740)
T ss_pred             CCcccceeEEeecCCccCCcCCCCCCccccccccHHHHHHHHHH-hcccchhcchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4      555655666    21    1 1222221111  3344 34433             25666677777776666


Q ss_pred             ccc
Q psy15181        273 SCL  275 (289)
Q Consensus       273 ~~~  275 (289)
                      ..+
T Consensus       475 ~~~  477 (740)
T KOG3686|consen  475 TTD  477 (740)
T ss_pred             ccc
Confidence            555

>KOG3652|consensus

Probab=98.39  E-value=5.7e-07  Score=92.96  Aligned_cols=93  Identities=27%  Similarity=0.433  Sum_probs=78.2

Q ss_pred             HHHHHHh-hcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCC----ChhHHHHHHhcCCeEEcCCCCCCCccccCCCCC-
Q psy15181         64 GKRAISN-LDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYG----SIRYMDFLQRLGTLIKLTDADPLNVFLGGLETN-  137 (289)
Q Consensus        64 ~~r~L~~-LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~g----S~~y~~FL~~LG~~V~Lk~~~~~~gy~GGLD~~-  137 (289)
                      |.++|.. ||-.|.|-+..+-|.|+++||. .-+|||.|.+.    -++|-+||..|||-|++-   .|+||+|-..+. 
T Consensus       855 FfdDig~tlD~~P~RpfdTafIFYmK~GQk-~~qdILeNaensqn~~p~F~eFL~nLG~~idiG---rH~gWTGHvSTaw  930 (1215)
T KOG3652|consen  855 FFDDIGETLDCAPARPFDTAFIFYMKEGQK-IAQDILENAENSQNSCPDFCEFLANLGEGIDIG---RHDGWTGHVSTAW  930 (1215)
T ss_pred             HHHhhhhhcccccCCccceEEEEEeccchh-hHHHHHHhHhhccccChHHHHHHHhcccceeec---cCCCccceeeeee
Confidence            7888887 9999999999999999999998 57899999764    589999999999999994   599999976541 


Q ss_pred             ---------C-----C----------Cc-cEEEEeec---CceeEEEEEcc
Q psy15181        138 ---------G-----S----------DG-KYTYSWQD---EVMQVIFHVAT  160 (289)
Q Consensus       138 ---------~-----~----------dG-~~t~y~~d---~~~EI~FHVaT  160 (289)
                               +     .          || +.+.||+|   ..+||.|-+++
T Consensus       931 SinccddgEgk~QE~~d~eD~gasIfdG~k~aL~~aDeqgalsEiAFlmPs  981 (1215)
T KOG3652|consen  931 SINCCDDGEGKLQEEADGEDHGASIFDGIKHALWWADEQGALSEIAFLMPS  981 (1215)
T ss_pred             eeccccccchhhhhhcccccchhhhhcchhhheeeecccCccceeEEeccC
Confidence                     0     1          22 25779999   88999998887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
1srq_A	341	Crystal Structure Of The Rap1gap Catalytic Domain L		2e-10
3brw_A	341	Structure Of The Rap-Rapgap Complex Length = 341		8e-10

>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain Length = 341

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 63  QGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLT 122
           +  R I   D        K GV+Y   GQ  SE+E+      S  +++FL+ LG  +KL 
Sbjct: 102 KASRLIVTFDEHVISNNFKFGVIYQKLGQ-TSEEELFSTNEESPAFVEFLEFLGQKVKLQ 160
Query: 123 DADPLNVFLGGLE-TNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
           D      F GGL+ T+G  G  +        +++FHV+T +P  E D     +K++IGND
Sbjct: 161 D---FKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGND 217
Query: 182 YVTIVYNESGVDY 194
            V +V+ +    +
Sbjct: 218 IVAVVFQDENTPF 230

>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex Length = 341

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 63  QGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLT 122
           +  R I   D        K GV+Y   G   SE+E+      S  +++FL+ LG  +KL 
Sbjct: 102 KASRLIVTFDEHVISNNFKFGVIYQKLG-ATSEEELFSTNEESPAFVEFLEFLGQKVKLQ 160
Query: 123 DADPLNVFLGGLE-TNGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGND 181
           D      F GGL+ T+G  G  +        +++FHV+T +P  E D     +K++IGND
Sbjct: 161 D---FKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGND 217
Query: 182 YVTIVYNESGVDY 194
            V +V+ +    +
Sbjct: 218 IVAVVFQDENTPF 230
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1srq_A	341	RAP1GAP, GTPase-activating protein 1; mixed alpha-	2e-40

>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A* Length = 341

 Score =  142 bits (359), Expect = 2e-40
 Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 9/205 (4%)

Query: 34  SNPSAVFLSLFHSPQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGN 93
             P+ V ++             P+L    +  R I   D        K GV+Y   GQ  
Sbjct: 75  EFPNVVQMAKLVCEDVNVDRFYPVL--YPKASRLIVTFDEHVISNNFKFGVIYQKLGQ-T 131

Query: 94  SEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLNVFLGGLET-NGSDGKYTYSWQDEVM 152
           SE+E+      S  +++FL+ LG  +KL D      F GGL+  +G  G  +        
Sbjct: 132 SEEELFSTNEESPAFVEFLEFLGQKVKLQDFK---GFRGGLDVTHGQTGTESVYCNFRNK 188

Query: 153 QVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRT 212
           +++FHV+T +P  E D     +K++IGND V +V+ +    +    +          ++ 
Sbjct: 189 EIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQA 248

Query: 213 VKVRLCPVDYNIRTVKVRLAGCPCF 237
                    Y +          P F
Sbjct: 249 EGGGPDGPLYKVSV--TARDDVPFF 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1srq_A	341	RAP1GAP, GTPase-activating protein 1; mixed alpha-	100.0

>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*

Probab=100.00  E-value=7.6e-55  Score=414.98  Aligned_cols=210  Identities=24%  Similarity=0.337  Sum_probs=174.9

Q ss_pred             CCCCCCcceecCchHHHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCCChhHHHHHHhcCCeEEcCCCCCCC
Q psy15181         49 FGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADPLN  128 (289)
Q Consensus        49 ~~~~~~~pi~lp~~~~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~gS~~y~~FL~~LG~~V~Lk~~~~~~  128 (289)
                      ......+|+++|+.  .++|..||+++.+++||||||||++||+ +|+|||+|++||++|.+||++|||+|+|+|   |+
T Consensus        90 ~~~~~~~pi~~p~~--~~~L~~lD~~~~~~~~K~GViYv~~GQ~-~e~eIl~N~~gS~~f~eFL~~LG~~V~Lk~---~~  163 (341)
T 1srq_A           90 VNVDRFYPVLYPKA--SRLIVTFDEHVISNNFKFGVIYQKLGQT-SEEELFSTNEESPAFVEFLEFLGQKVKLQD---FK  163 (341)
T ss_dssp             CCCSCCEECCCTTH--HHHHHHHHHTTSCCEEEEEEEEECSSCC-SHHHHHCCCSCCHHHHHHHHHHSEEEESTT---CC
T ss_pred             hcccccccccCccH--HHHHHHHhccCCcCceEEEEEEECCCCC-CHHHHhcCCCCCHHHHHHHHHhCCcEEeCC---CC
Confidence            34456789999986  6999999999999999999999999998 799999999999999999999999999998   47


Q ss_pred             ccccCCCC-CCCCccEEEEeecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccccCCCcc
Q psy15181        129 VFLGGLET-NGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVD  207 (289)
Q Consensus       129 gy~GGLD~-~~~dG~~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq~~p~~  207 (289)
                      ||+||||+ ++.+|.+++||++...|||||||||||+.++|+||++||||||||+|+|||+|++.+|+|++|+||     
T Consensus       164 gy~GGLD~~~~~tG~~s~Y~~~~~~EImFHVsTlmP~~~~D~qq~~kKRHIGND~V~IVf~E~~~~f~p~~I~S~-----  238 (341)
T 1srq_A          164 GFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASN-----  238 (341)
T ss_dssp             SCCTTCCSSSCTTCSEEEEEECSSCEEEEEEGGGSCCCTTCTTCHHHHHHHTTCSEEEEEESSCCCCCGGGSCCS-----
T ss_pred             CCCcCCCccCCCCCCEEEEEEeCCeEEEEEecCCCCCCcCchhhhhhccccCCCEEEEEEeCCCCCcCCcccccc-----
Confidence            99999998 468999999988888999999999999999999999999999999999999999999999999999     


Q ss_pred             cceeeeEEEEEeec----CC--eEEEEEecC----CC----cccccch-----------hhhccchhh--hhcCc--hhh
Q psy15181        208 YNIRTVKVRLCPVD----YN--IRTVKVRLA----GC----PCFVTDK-----------IDHNSKSVW--IHQNP--FSY  258 (289)
Q Consensus       208 Fn~v~~~IVI~P~~----~~--~v~V~~r~~----g~----~~ivs~~-----------l~a~~as~~--~~~~~--~~R  258 (289)
                      ||||  +|||+|..    +.  +|.|.++++    |.    +.+++..           |+|+.|+.-  ..+..  ..|
T Consensus       239 Fn~v--~IVV~p~~~~~~~~~yrV~v~~k~~vp~fgP~lp~~~v~~k~~~~~~fll~klINae~a~~~s~~f~~~~~RtR  316 (341)
T 1srq_A          239 FLHA--YVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTR  316 (341)
T ss_dssp             SCCE--EEEEEEECC----CEEEEEEEECTTSCCCSSCCCTTCEEESSHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             CceE--EEEEEeCCCCCCCceEEEEEEecCCCCCCCCCCCCCceecCcHHHHHHHHHHHHHHHHHhhcCccccchHHHHH
Confidence            9999  99999864    33  677777776    21    3444533           455554431  00111  245


Q ss_pred             HHHHhhhhhhhhh
Q psy15181        259 LEHIKNLPTKLQL  271 (289)
Q Consensus       259 lr~ik~lr~r~~~  271 (289)
                      ...|+.|-+++..
T Consensus       317 ~~ll~~i~~~~~~  329 (341)
T 1srq_A          317 AALLETLYEELHI  329 (341)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5667777777663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1srqa_	336	e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Ra	5e-49

>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Multi-domain proteins (alpha and beta)
fold: Rap/Ran-GAP
superfamily: Rap/Ran-GAP
family: Rap/Ran-GAP
domain: Rap1 GTPase-activating protein 1, Rap1GAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (414), Expect = 5e-49
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 5/178 (2%)

Query: 52  TNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDF 111
             ++   V   +  R I   D        K GV+Y   GQ + E+E+      S  +++F
Sbjct: 88  NVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTS-EEELFSTNEESPAFVEF 146

Query: 112 LQRLGTLIKLTDADPLNVFLGGLET-NGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPN 170
           L+ LG  +KL D      F GGL+  +G  G  +        +++FHV+T +P  E D  
Sbjct: 147 LEFLGQKVKLQDFKG---FRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQ 203

Query: 171 CNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCPVDYNIRTVKVRLCPVDYNIRTVK 228
              +K++IGND V +V+ +    +    +          ++          Y +    
Sbjct: 204 QLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTA 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1srqa_	336	Rap1 GTPase-activating protein 1, Rap1GAP {Human (	100.0

>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Rap/Ran-GAP
superfamily: Rap/Ran-GAP
family: Rap/Ran-GAP
domain: Rap1 GTPase-activating protein 1, Rap1GAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-56  Score=424.45  Aligned_cols=211  Identities=24%  Similarity=0.338  Sum_probs=176.4

Q ss_pred             CCCCCCCCcceecCchHHHHHHHhhcCCCCCccceEEEEEEcCCCCCCHHHhhhCCCCChhHHHHHHhcCCeEEcCCCCC
Q psy15181         47 PQFGGTNEKPILVSNEQGKRAISNLDWIPPYETHKVGVLYVGPGQGNSEQEILRNQYGSIRYMDFLQRLGTLIKLTDADP  126 (289)
Q Consensus        47 ~~~~~~~~~pi~lp~~~~~r~L~~LD~~~~~e~hKiGViYv~~GQ~~~E~eILsN~~gS~~y~~FL~~LG~~V~Lk~~~~  126 (289)
                      +.......+|+.-|+  +.++|..||+.+.+++||||||||++||+ +|+|||+|+++|++|.+||++|||.|+|+|   
T Consensus        85 ~~~~~~~~~~~~~p~--~~~~l~~lD~~~~~~~~K~GViYvk~GQ~-~e~eIl~N~~~S~~F~eFL~~LG~~V~Lk~---  158 (336)
T d1srqa_          85 EDVNVDRFYPVLYPK--ASRLIVTFDEHVISNNFKFGVIYQKLGQT-SEEELFSTNEESPAFVEFLEFLGQKVKLQD---  158 (336)
T ss_dssp             TTCCCSCCEECCCTT--HHHHHHHHHHTTSCCEEEEEEEEECSSCC-SHHHHHCCCSCCHHHHHHHHHHSEEEESTT---
T ss_pred             hhhcccccccccChh--HHHHHHhhhccccccceEEEEEEecCCCC-CHHHHhhCCCCCHHHHHHHHHhCCEEEcCC---
Confidence            333334556776665  68999999999999999999999999998 799999999999999999999999999998   


Q ss_pred             CCccccCCCC-CCCCccEEEEeecCceeEEEEEcccCCCCCCCcchhhhhcccCCCeEEEEEeCCCCccccccccccCCC
Q psy15181        127 LNVFLGGLET-NGSDGKYTYSWQDEVMQVIFHVATMMPTLESDPNCNNKKKNIGNDYVTIVYNESGVDYNIRTVKVRLCP  205 (289)
Q Consensus       127 ~~gy~GGLD~-~~~dG~~t~y~~d~~~EI~FHVaTlMP~~~~D~q~~~KKRHIGND~V~IVfnEs~~~y~~~tI~sq~~p  205 (289)
                      |+||+||||+ ++.+|.+++||++...|||||||||||+.++|+||.+||||||||+|+|||+|++.+|+|++|+||   
T Consensus       159 ~~gy~GgLD~~~~~tG~~s~Y~~~~~~EImFHVsTllP~~~~D~qq~~kKRHIGND~V~IVf~E~~~~f~~~~I~Sq---  235 (336)
T d1srqa_         159 FKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASN---  235 (336)
T ss_dssp             CCSCCTTCCSSSCTTCSEEEEEECSSCEEEEEEGGGSCCCTTCTTCHHHHHHHTTCSEEEEEESSCCCCCGGGSCCS---
T ss_pred             CCCcccCccccCCCCCCEEEEEecCCEEEEEEecccCCCCCCChhhhhhhhccCCCeEEEEEecCCCCcCchhhccc---
Confidence            4799999997 578999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             cccceeeeEEEEEeecCC------eEEEEEecC----CC----cccccch-----------hhhccchhh---hhcC-ch
Q psy15181        206 VDYNIRTVKVRLCPVDYN------IRTVKVRLA----GC----PCFVTDK-----------IDHNSKSVW---IHQN-PF  256 (289)
Q Consensus       206 ~~Fn~v~~~IVI~P~~~~------~v~V~~r~~----g~----~~ivs~~-----------l~a~~as~~---~~~~-~~  256 (289)
                        ||||  +|||+|+.++      +|.|.++++    |.    +.++++.           |+|+.|+.+   +... ..
T Consensus       236 --Fn~v--~IVV~p~~~~~~~~~yrV~V~~k~~vp~fgPpl~~~~v~~~~~~~~~fll~k~INae~a~~~s~~f~~~~~r  311 (336)
T d1srqa_         236 --FLHA--YVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEER  311 (336)
T ss_dssp             --SCCE--EEEEEEECC----CEEEEEEEECTTSCCCSSCCCTTCEEESSHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             --CceE--EEEEEeCCCCCCCCcEEEEEEecCCCCcCCCCCCCCCEecChHHHHHHHHHHHHhHHHHHhhChhhhHHHHH
Confidence              9999  9999999775      566666766    21    3344432           455555542   0101 12


Q ss_pred             hhHHHHhhhhhhhh
Q psy15181        257 SYLEHIKNLPTKLQ  270 (289)
Q Consensus       257 ~Rlr~ik~lr~r~~  270 (289)
                      .|.+.|+.|.+++.
T Consensus       312 tR~~~L~~l~~~~~  325 (336)
T d1srqa_         312 TRAALLETLYEELH  325 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            57777888887755