Psyllid ID: psy15182

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
SALVQKPKKNITFIFLSGFQSRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPCMANW
ccccccccccEEEEEcccccccccccEEEEccccccccccccccEEEcccccccEEEEEEEEccEEEEEEccEEEEEEEcccccEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEccccccccccccccccccccEEEEEEccccEEEEEEEEccEEEEEEEEcccEEEEEEEcccccccccEEEEccccccccEEEEEEEEccEEEEEEEEccEEEEEEcccccEEEcccccccccccccEEEEEEccccccEEEEEEccEEEEEEccccccccEEEEEcccccEEEEccccEEEEEcccEEEEEEcccccEEEEEEccccccEEEEEEEccEEEEEEcccccEEEEEEEEccccccccc
ccccccccccEEEccccccccccccEEEEEccccccccccccHHHHHHHHHccHHHHHHHHHHHHHEEccccccEEEccccccEEEEcccccccHHHHHHccccEEEEEccccccEEEEEHHHHHHHHHccccHHHcccccEEcccccccEEEEEEEHHHHEEEEEEEcccEEEEEEccccccHEEEEEcccccccccEEEEEEEEcccEEEEEEEccccEEEEEcccccEEEEEccccccccccccEEEEEccccccEEEEEEcccEEEEEccccEEHHHHHHHcccccEEEEEEcccEccccccEEEEEEccccccccHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccccccc
salvqkpkknITFIFLSGFqsrreshvnvnvtptcqdlssdtpeIRKYKKKFGSEILCAALWGVNLLIGTETGLMlldrsgqgkvYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMdgqverrngwinvgdlqgAVHFRIVKYERIKFLVIALKDSIEiyawapkpyhkfmafksfgelgyrpllvdltveEGTRLKVIygsadgfhavdldsamvydiylpkhiqgpicphcivalpnsngmqlLLCYDNEGVYVNTYGKVSKNIllqwgemptsvayigtgqimgwgnkAIEIRSVETGHLDGVFMHKKSQRLKFLCERndkvffssakggghcqIYFMtlnkpcmanw
salvqkpkkniTFIFLsgfqsrreshvnvnvtptcqdlssdtpEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFqqmevlegqnilvtisgkrnrvRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFssakggghcQIYFMTLNKPCMANW
SALVQKPKKNITFIFLSGFQSRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPCMANW
*********NITFIFLSGFQSRRESHVNVNVTPTCQ*******EIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPC****
**********************************************KYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWL*****************INVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWA*****KFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPC****
SALVQKPKKNITFIFLSGFQSRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPCMANW
**********IT***LSGFQSRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPC****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SALVQKPKKNITFIFLSGFQSRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPCMANW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query366 2.2.26 [Sep-21-2011]
Q233561096 Serine/threonine-protein yes N/A 0.934 0.312 0.750 1e-162
P835101323 Traf2 and NCK-interacting yes N/A 0.923 0.255 0.727 1e-158
Q9JM521308 Misshapen-like kinase 1 O no N/A 0.945 0.264 0.727 1e-157
Q9UKE51360 TRAF2 and NCK-interacting no N/A 0.923 0.248 0.727 1e-157
F1LP901336 Misshapen-like kinase 1 O yes N/A 0.945 0.258 0.729 1e-157
O958191239 Mitogen-activated protein no N/A 0.923 0.272 0.739 1e-157
Q8N4C81332 Misshapen-like kinase 1 O no N/A 0.923 0.253 0.736 1e-157
P978201233 Mitogen-activated protein no N/A 0.923 0.274 0.736 1e-156
Q7Z2Y51582 Nik-related protein kinas no N/A 0.937 0.216 0.353 1e-69
Q9R0G81455 Nik-related protein kinas no N/A 0.928 0.233 0.360 8e-67
>sp|Q23356|MIG15_CAEEL Serine/threonine-protein kinase mig-15 OS=Caenorhabditis elegans GN=mig-15 PE=2 SV=3 Back     alignment and function desciption
 Score =  570 bits (1469), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 262/349 (75%), Positives = 298/349 (85%), Gaps = 7/349 (2%)

Query: 25   SHVNVNVTPTCQ--DLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQ 82
            + V VNVTP        +D PEIRKYKKKF  EILCAALWGVNLLIGT++GLMLLDRSGQ
Sbjct: 748  NQVQVNVTPNSNGTPAENDAPEIRKYKKKFSGEILCAALWGVNLLIGTDSGLMLLDRSGQ 807

Query: 83   GKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDG-----QVER 137
            GKVY L++RRRF QM VLEGQNIL TISG++ R+RV+YLSWL+ KIL+ +G       E+
Sbjct: 808  GKVYPLISRRRFDQMTVLEGQNILATISGRKRRIRVYYLSWLRQKILRTEGAGSANTTEK 867

Query: 138  RNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYR 197
            RNGW+NVGDLQGA+HF+IV+YERIKFLV+ L+ SIEIYAWAPKPYHKFM+FKSFG L + 
Sbjct: 868  RNGWVNVGDLQGAIHFKIVRYERIKFLVVGLESSIEIYAWAPKPYHKFMSFKSFGSLSHV 927

Query: 198  PLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNG 257
            PL+VDLTVE+  RLKV+YGS  GFHA+DLDSA VYDIY P        PHCIV LPNSNG
Sbjct: 928  PLIVDLTVEDNARLKVLYGSTGGFHAIDLDSAAVYDIYTPAQSGQTTTPHCIVVLPNSNG 987

Query: 258  MQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGH 317
            MQLLLCYDNEGVYVNTYG+++KN++LQWGEMP+SVAYI TGQIMGWGNKAIEIRSV+TGH
Sbjct: 988  MQLLLCYDNEGVYVNTYGRMTKNVVLQWGEMPSSVAYISTGQIMGWGNKAIEIRSVDTGH 1047

Query: 318  LDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTLNKPCMANW 366
            LDGVFMHKK+Q+LKFLCERNDKVFFSSAKGGG CQIYFMTLNKP + NW
Sbjct: 1048 LDGVFMHKKAQKLKFLCERNDKVFFSSAKGGGSCQIYFMTLNKPGLTNW 1096
Involved in cell migration and signal transduction. Important in several developmental processes including epidermal development, Q neuroblast migrations and muscle arm targeting. Required with ina-1/pat-3 to stabilize the commissural axons growth cone along a precise direction and are required for the cell to respond appropriately when signaling in the growth cone must change.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|P83510|TNIK_MOUSE Traf2 and NCK-interacting protein kinase OS=Mus musculus GN=Tnik PE=1 SV=2 Back     alignment and function description
>sp|Q9JM52|MINK1_MOUSE Misshapen-like kinase 1 OS=Mus musculus GN=Mink1 PE=1 SV=3 Back     alignment and function description
>sp|Q9UKE5|TNIK_HUMAN TRAF2 and NCK-interacting protein kinase OS=Homo sapiens GN=TNIK PE=1 SV=1 Back     alignment and function description
>sp|F1LP90|MINK1_RAT Misshapen-like kinase 1 OS=Rattus norvegicus GN=Mink1 PE=1 SV=2 Back     alignment and function description
>sp|O95819|M4K4_HUMAN Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=1 SV=2 Back     alignment and function description
>sp|Q8N4C8|MINK1_HUMAN Misshapen-like kinase 1 OS=Homo sapiens GN=MINK1 PE=1 SV=2 Back     alignment and function description
>sp|P97820|M4K4_MOUSE Mitogen-activated protein kinase kinase kinase kinase 4 OS=Mus musculus GN=Map4k4 PE=1 SV=1 Back     alignment and function description
>sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens GN=NRK PE=1 SV=2 Back     alignment and function description
>sp|Q9R0G8|NRK_MOUSE Nik-related protein kinase OS=Mus musculus GN=Nrk PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
307191285 1290 Serine/threonine-protein kinase mig-15 [ 0.994 0.282 0.888 0.0
307203571 1289 Serine/threonine-protein kinase mig-15 [ 0.994 0.282 0.888 0.0
383851117 1312 PREDICTED: mitogen-activated protein kin 0.994 0.277 0.885 0.0
332027825 834 Serine/threonine-protein kinase mig-15 [ 0.994 0.436 0.883 0.0
340730093 1300 PREDICTED: mitogen-activated protein kin 0.994 0.28 0.877 0.0
350425605 1270 PREDICTED: mitogen-activated protein kin 0.994 0.286 0.877 0.0
340730091 1034 PREDICTED: mitogen-activated protein kin 0.994 0.352 0.877 0.0
340730095 1027 PREDICTED: mitogen-activated protein kin 0.994 0.354 0.877 0.0
328786728 1344 PREDICTED: serine/threonine-protein kina 0.994 0.270 0.872 0.0
270007830 1219 hypothetical protein TcasGA2_TC014568 [T 0.997 0.299 0.880 0.0
>gi|307191285|gb|EFN74932.1| Serine/threonine-protein kinase mig-15 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/368 (88%), Positives = 345/368 (93%), Gaps = 4/368 (1%)

Query: 2    ALVQKPKKNITFIFLSGFQSRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAAL 61
            AL QK +  +TF F +G  +RRESHVNVNVTPT  DL+SDTPEIRKYKK+F SEILCAAL
Sbjct: 924  ALQQKQRSFLTFGFGAG-PARRESHVNVNVTPTSHDLASDTPEIRKYKKRFNSEILCAAL 982

Query: 62   WGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVFYL 121
            WGVNLLIGTE GLMLLDRSGQGKVYQL++RRRFQQMEVLEGQNILVTISGK+NRVRV+YL
Sbjct: 983  WGVNLLIGTENGLMLLDRSGQGKVYQLISRRRFQQMEVLEGQNILVTISGKKNRVRVYYL 1042

Query: 122  SWLKSKILKMDG---QVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWA 178
            SWLKSKIL+ DG   QVERRNGWINVGDLQGAVHF+IVKYERIKFLVIALKDSIEIYAWA
Sbjct: 1043 SWLKSKILRTDGHSDQVERRNGWINVGDLQGAVHFKIVKYERIKFLVIALKDSIEIYAWA 1102

Query: 179  PKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPK 238
            PKPYHKFMAFKSFGEL +RPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSA VYDIYLPK
Sbjct: 1103 PKPYHKFMAFKSFGELAHRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSATVYDIYLPK 1162

Query: 239  HIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTG 298
            H QGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYG+VSK ++LQWGEMPTSVAYIGTG
Sbjct: 1163 HTQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGRVSKTMVLQWGEMPTSVAYIGTG 1222

Query: 299  QIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFMTL 358
            QIMGWGNKAIEIRSVE+GHLDGVFMHKK+QRLKFLCERNDKVFFSSAKGG  CQIYFMTL
Sbjct: 1223 QIMGWGNKAIEIRSVESGHLDGVFMHKKAQRLKFLCERNDKVFFSSAKGGSSCQIYFMTL 1282

Query: 359  NKPCMANW 366
            NKP MANW
Sbjct: 1283 NKPGMANW 1290

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307203571|gb|EFN82604.1| Serine/threonine-protein kinase mig-15 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383851117|ref|XP_003701086.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4 [Megachile rotundata] Back     alignment and taxonomy information
>gi|332027825|gb|EGI67888.1| Serine/threonine-protein kinase mig-15 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340730093|ref|XP_003403322.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350425605|ref|XP_003494174.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340730091|ref|XP_003403321.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340730095|ref|XP_003403323.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4-like isoform 3 [Bombus terrestris] Back     alignment and taxonomy information
>gi|328786728|ref|XP_396948.4| PREDICTED: serine/threonine-protein kinase mig-15 [Apis mellifera] Back     alignment and taxonomy information
>gi|270007830|gb|EFA04278.1| hypothetical protein TcasGA2_TC014568 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query366
FB|FBgn00109091504 msn "misshapen" [Drosophila me 0.997 0.242 0.856 2.4e-170
WB|WBGene000032471096 mig-15 [Caenorhabditis elegans 0.934 0.312 0.750 7.3e-146
UNIPROTKB|E1BRQ31182 Gga.4757 "Uncharacterized prot 0.939 0.291 0.736 6.8e-143
UNIPROTKB|E1BV671267 Gga.4757 "Uncharacterized prot 0.939 0.271 0.736 6.8e-143
UNIPROTKB|E1BZV21187 Gga.4757 "Uncharacterized prot 0.939 0.289 0.736 6.8e-143
RGD|13591351336 Mink1 "misshapen-like kinase 1 0.945 0.258 0.729 2.9e-142
RGD|15975791303 LOC687705 "similar to misshape 0.945 0.265 0.729 2.9e-142
UNIPROTKB|F1LM561340 Mink1 "Misshapen-like kinase 1 0.945 0.258 0.729 2.9e-142
UNIPROTKB|F1LN691332 Mink1 "Misshapen-like kinase 1 0.945 0.259 0.729 2.9e-142
UNIPROTKB|K3W4V51321 Mink1 "Misshapen-like kinase 1 0.945 0.261 0.729 2.9e-142
FB|FBgn0010909 msn "misshapen" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
 Identities = 317/370 (85%), Positives = 340/370 (91%)

Query:     2 ALVQKPKKNITFIFLSGFQ--SRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCA 59
             AL QK +  +TF F +G    SRRESHVNVNVTPT  + ++DTPEIRKYKK+F SEILCA
Sbjct:  1135 ALQQKQRSFLTFGFGAGGSGPSRRESHVNVNVTPTSHEAANDTPEIRKYKKRFNSEILCA 1194

Query:    60 ALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVRVF 119
             ALWGVNLLIGTE GLMLLDRSGQGKVYQL++RRRFQQMEVLEGQNILVTISGK+NRVRV+
Sbjct:  1195 ALWGVNLLIGTENGLMLLDRSGQGKVYQLISRRRFQQMEVLEGQNILVTISGKKNRVRVY 1254

Query:   120 YLSWLKSKILKMDG---QVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYA 176
             YLSWLKSKIL+ DG   QVERRNGWINVGDLQGAVHF+IVKYERIKFLVIALKDSIEIYA
Sbjct:  1255 YLSWLKSKILRTDGLSDQVERRNGWINVGDLQGAVHFKIVKYERIKFLVIALKDSIEIYA 1314

Query:   177 WAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYL 236
             WAPKPYHKFMAFK+FGEL +RPLLVDLT+E+ +RLKVIYGSA+GFHAVDLDSA VYDIYL
Sbjct:  1315 WAPKPYHKFMAFKNFGELEHRPLLVDLTIEDQSRLKVIYGSAEGFHAVDLDSAEVYDIYL 1374

Query:   237 PKHIQGPICPHCIVALPNSNGMQLLLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIG 296
             PKH QG I PHCIVALPNSNGMQLLLCYDNEGVYVNT G+VSKNI+LQWGEMPTSVAYIG
Sbjct:  1375 PKHTQGAIIPHCIVALPNSNGMQLLLCYDNEGVYVNTVGRVSKNIVLQWGEMPTSVAYIG 1434

Query:   297 TGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKVFFSSAKGGGHCQIYFM 356
             TGQIMGWGNKAIEIRSVE+GHLDGVFMHKK+QRLKFLCERNDKVFFSSAKG   CQIYFM
Sbjct:  1435 TGQIMGWGNKAIEIRSVESGHLDGVFMHKKAQRLKFLCERNDKVFFSSAKGASSCQIYFM 1494

Query:   357 TLNKPCMANW 366
             TLNKP MANW
Sbjct:  1495 TLNKPGMANW 1504
GO:0048477 "oogenesis" evidence=NAS
GO:0006468 "protein phosphorylation" evidence=ISS;NAS
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP
GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;NAS
GO:0007391 "dorsal closure" evidence=IGI;IMP;TAS
GO:0008349 "MAP kinase kinase kinase kinase activity" evidence=ISS;NAS
GO:0000185 "activation of MAPKKK activity" evidence=NAS
GO:0007254 "JNK cascade" evidence=IGI;ISS;NAS;IMP
GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IGI
GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=NAS
GO:0042656 "JUN kinase kinase kinase kinase activity" evidence=TAS
GO:0001736 "establishment of planar polarity" evidence=NAS
GO:0005083 "small GTPase regulator activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0007097 "nuclear migration" evidence=IMP
GO:0001748 "optic lobe placode development" evidence=IMP
GO:0046529 "imaginal disc fusion, thorax closure" evidence=IMP
GO:0016476 "regulation of embryonic cell shape" evidence=IMP
GO:0005938 "cell cortex" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP
GO:0007411 "axon guidance" evidence=IMP
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
WB|WBGene00003247 mig-15 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRQ3 Gga.4757 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV67 Gga.4757 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZV2 Gga.4757 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1359135 Mink1 "misshapen-like kinase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1597579 LOC687705 "similar to misshapen-like kinase 1 isoform 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LM56 Mink1 "Misshapen-like kinase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LN69 Mink1 "Misshapen-like kinase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|K3W4V5 Mink1 "Misshapen-like kinase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q23356MIG15_CAEEL2, ., 7, ., 1, 1, ., 10.75070.93440.3120yesN/A
P83510TNIK_MOUSE2, ., 7, ., 1, 1, ., 10.72780.92340.2554yesN/A
F1LP90MINK1_RAT2, ., 7, ., 1, 1, ., 10.72980.94530.2589yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
smart00036302 smart00036, CNH, Domain found in NIK1-like kinases 2e-93
pfam00780266 pfam00780, CNH, CNH domain 2e-68
COG54221175 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange 2e-07
>gnl|CDD|214481 smart00036, CNH, Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information 
 Score =  280 bits (719), Expect = 2e-93
 Identities = 99/310 (31%), Positives = 153/310 (49%), Gaps = 19/310 (6%)

Query: 48  YKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQ-GKVYQLVNRRRFQQMEVLEGQNIL 106
              K+   I C   W   LL+GTE GL +L+ S Q G + +L+ RR   Q+ VLE  N+L
Sbjct: 1   NTAKWNHPITCDGKW---LLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVL 57

Query: 107 VTISGKRNRVRVFYLSWLKSKILKM--DGQVERRNGWINVGDLQGAVHFRIVKYERIKFL 164
           + ISGK+ ++    LS L  K   +     V R+N    + D++G     +V  +R  FL
Sbjct: 58  LMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDVKGCHLCAVVNGKRSLFL 117

Query: 165 VIALKDSIEIYAWAPKPYHKFMAFKSFGELGYR---PLLVDLTVEEGTRLKVIYGS-ADG 220
            +AL+ S+ +  W   P  KF  FKS          P+ V+L      R  +  GS   G
Sbjct: 118 CVALQSSVVLLQW-YNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGG 176

Query: 221 FHAVDLDSAMV--YDIYLPKHIQGPIC-PHCIVALPNSNGMQLLLCYDNEGVYVNTYGK- 276
              V    ++V   D+ LP   +     P  +V +P     ++LLCYD  GV+VN YGK 
Sbjct: 177 GDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPR---DEVLLCYDEFGVFVNLYGKR 233

Query: 277 VSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCER 336
            S+N +L W  MP S AY     ++ + +  IEIRS++TG L      +++++++ L   
Sbjct: 234 RSRNPILHWEFMPESFAYHS-PYLLAFHDNGIEIRSIKTGELLQELADRETRKIRLLGSS 292

Query: 337 NDKVFFSSAK 346
           + K+  SS+ 
Sbjct: 293 DRKILLSSSP 302

Length = 302
>gnl|CDD|216115 pfam00780, CNH, CNH domain Back     alignment and domain information
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 366
KOG0587|consensus953 100.0
smart00036302 CNH Domain found in NIK1-like kinases, mouse citro 100.0
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 100.0
COG54221175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 100.0
KOG4305|consensus1029 99.95
KOG0576|consensus829 99.95
KOG2063|consensus 877 99.92
KOG0976|consensus 1265 99.17
KOG0976|consensus1265 98.93
KOG0612|consensus1317 97.77
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 92.18
KOG1274|consensus 933 91.22
KOG0294|consensus362 90.14
KOG1273|consensus405 87.89
KOG1273|consensus405 86.27
KOG2106|consensus626 86.0
KOG0264|consensus422 83.71
>KOG0587|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-60  Score=496.47  Aligned_cols=343  Identities=74%  Similarity=1.293  Sum_probs=335.5

Q ss_pred             ccceeeeeecccCCccCCCCCCceeeEeeecCCceeEEeEEecceEEEeecceeEEEEecCCCceEEeecCCceEEEEEe
Q psy15182         21 SRRESHVNVNVTPTCQDLSSDTPEIRKYKKKFGSEILCAALWGVNLLIGTETGLMLLDRSGQGKVYQLVNRRRFQQMEVL  100 (366)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~k~f~~~I~Caa~wg~~LllGTeeGlyll~~~~~~~~~~l~~~k~v~Ql~Vl  100 (366)
                      .++.++| ||  |+.+++++++|+++++.++|+++|.|+|.||.|+++||++|+.+++++++++++.++++|+++||+|+
T Consensus       611 ~~~~s~v-~n--~~~~ra~s~~~eirk~kk~~~se~~~aa~~g~n~~~~t~~gl~lld~s~q~k~~~~i~~rrfqq~~~l  687 (953)
T KOG0587|consen  611 TRKGSVV-VN--PTNTRAQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVL  687 (953)
T ss_pred             cccccee-ec--CCCCcccccCHHHHHHHHhhhhhHHHHHhcCcceeecccccceeeccccCcccCCcccchhccccccc
Confidence            4677888 88  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCC
Q psy15182        101 EGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPK  180 (366)
Q Consensus       101 e~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~  180 (366)
                      |.+|+|.+++|+.+.+++|.|+||.++++..++.++|+.||++++++.||.+|.+++++..++|++|.+.++.+|.|+|+
T Consensus       688 e~~n~l~tis~~~~~~~~~y~s~~~~k~l~~d~e~ek~~~~~~~~~~~~~~~~~~~k~~~ik~l~is~~~s~evy~~apk  767 (953)
T KOG0587|consen  688 EGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCIHYKVVKYERIKFLVIALKSSVEVYAWAPK  767 (953)
T ss_pred             CCcceeEEEeccccccceecchHHhhhhhhcCchhhhhccchhhhhhhcchhhhHHHHHHHHHhheeccccceeeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceE
Q psy15182        181 PYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQL  260 (366)
Q Consensus       181 p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~  260 (366)
                      |+|+||.+|.|.++++.|..+++++.++++++|.||+..||+.+|++++.+.+++.|++.+....|++++.+++..+.+.
T Consensus       768 ~~~k~~~~~s~~~~~~~~~~~d~~~ee~~~~~v~~gs~~~~~~~~~~~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~  847 (953)
T KOG0587|consen  768 PYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSITPHAIIILPNTDGMEL  847 (953)
T ss_pred             hHHHHHhhhhhhhhcccchhccchhhcCceEEEEecCcccccccccCCCCCCCCcCCcchhhcccceeEecCCCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             EEEEcceEEEEeCCCceeeeeeeeeCCCCcEEEEccCCeEEEEeCCeEEEEEccCCCEEEEEeccCCCceeEEEEeCCEE
Q psy15182        261 LLCYDNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVETGHLDGVFMHKKSQRLKFLCERNDKV  340 (366)
Q Consensus       261 LLcy~~~~vfVn~~G~~sr~~~l~W~~~P~sva~~~~PYil~f~~~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~~~d~v  340 (366)
                      |||||+.+++||..|+..++...+|...|++++|+++..++||.+++||+|+++++.+..+++||++++|+++|.++|++
T Consensus       848 l~~~~~e~~~~~~~~~~~k~v~~~~~~~~Ss~a~~~~~n~~g~~~ka~e~~s~e~~~~~g~~~~k~~~kls~~~~~~dK~  927 (953)
T KOG0587|consen  848 LLCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQIMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKV  927 (953)
T ss_pred             hhhhhcccccccCccchHHHHHHhcCCCCCcceeeecccccccCcccceeeccccccccceeehhhHHhhhHHhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCeeEEEEEecCCCcCCCC
Q psy15182        341 FFSSAKGGGHCQIYFMTLNKPCMANW  366 (366)
Q Consensus       341 f~as~~~~~~~~v~~~~~~~~~~~~~  366 (366)
                      ||+++.++++|+|||||++|+.+.||
T Consensus       928 ~f~s~~~~~~~~~y~~tl~r~~~~~~  953 (953)
T KOG0587|consen  928 FFASVRSGGSSQVYFMTLNRTSLLNW  953 (953)
T ss_pred             HHHHHhcCCcceeeeeecCCcccccC
Confidence            99999999999999999999999998

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>KOG0576|consensus Back     alignment and domain information
>KOG2063|consensus Back     alignment and domain information
>KOG0976|consensus Back     alignment and domain information
>KOG0976|consensus Back     alignment and domain information
>KOG0612|consensus Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG1274|consensus Back     alignment and domain information
>KOG0294|consensus Back     alignment and domain information
>KOG1273|consensus Back     alignment and domain information
>KOG1273|consensus Back     alignment and domain information
>KOG2106|consensus Back     alignment and domain information
>KOG0264|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query366
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 43/308 (13%), Positives = 97/308 (31%), Gaps = 97/308 (31%)

Query: 15  FLSGFQSRRE--SHVNVNVTPTCQDLSS---DTPEIRKYKKKFG---------SEILCAA 60
            +    +  +   HVN +   T  + S    +  E RK   +           + +L   
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL- 394

Query: 61  LWGVNLLIGTETGLM---LLDRSGQGKVYQLVNRRRFQQMEVLEGQNILVTISGKRNRVR 117
           +W    +I ++  ++   L   S       LV ++                   K + + 
Sbjct: 395 IWFD--VIKSDVMVVVNKLHKYS-------LVEKQP------------------KESTIS 427

Query: 118 V--FYLSWLKSKILKMDGQVERRNGWINVGDLQGAVHFRIV-KYERIKFLVI--ALKDSI 172
           +   YL  LK K+                 + + A+H  IV  Y   K       +   +
Sbjct: 428 IPSIYLE-LKVKL-----------------ENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 173 EIYAWAPKPYHKFMAFKSFGEL--GYRPLLVDLTVEEGTRLKVIY-GSADGFHAVDLDSA 229
           + Y ++   +H  +      E    +R + +D    E    K+ +  +A       L++ 
Sbjct: 470 DQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTL 524

Query: 230 MVYDIYLPKHIQGPICP------------------HCIVALPNSNGMQLLLCYDNEGVYV 271
                Y   +I     P                  + I +   ++ +++ L  ++E ++ 
Sbjct: 525 QQLKFYK-PYIC-DNDPKYERLVNAILDFLPKIEENLICS-KYTDLLRIALMAEDEAIFE 581

Query: 272 NTYGKVSK 279
             + +V +
Sbjct: 582 EAHKQVQR 589

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 95.8
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 92.82
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 92.63
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.55
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 92.05
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 91.72
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 90.42
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 89.98
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 89.17
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 88.79
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 88.15
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 86.66
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 86.23
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 84.42
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 84.32
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 84.01
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 83.73
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 81.77
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 80.88
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 80.77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=95.80  E-value=1.2  Score=41.26  Aligned_cols=244  Identities=9%  Similarity=0.052  Sum_probs=111.5

Q ss_pred             eeEEeEEe--cceEEEeeccee-EEEEecCCCceEEeec--CCceEEEEEecCCCeEEEEECCCCeEEEEEchhhhcccc
Q psy15182         55 EILCAALW--GVNLLIGTETGL-MLLDRSGQGKVYQLVN--RRRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKIL  129 (366)
Q Consensus        55 ~I~Caa~w--g~~LllGTeeGl-yll~~~~~~~~~~l~~--~k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~  129 (366)
                      .|.|.+.-  |+.|+.|+.+|. .+.+.+  ++....+.  ...|..+...++.+.|++. +.++.|++|++..-.....
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEE
Confidence            67777533  345999999984 444533  23333332  3479999999888877655 5789999999864321000


Q ss_pred             ccCCcceeeeeeeEeecCCCceEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCC
Q psy15182        130 KMDGQVERRNGWINVGDLQGAVHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGT  209 (366)
Q Consensus       130 ~~~~~l~k~kg~~~v~~~kgc~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~  209 (366)
                      -..+...............+....++.......+++......|.+|.....   +  ..+.+..-......+.+. ..+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~---~--~~~~~~~~~~~i~~~~~~-~~~~  260 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK---T--PTGKLIGHHGPISVLEFN-DTNK  260 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS---S--CSEEECCCSSCEEEEEEE-TTTT
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC---c--eeeeeccCCCceEEEEEC-CCCC
Confidence            000000000000000000000011111122334555544455666554432   1  222321111222223221 1233


Q ss_pred             eEEEEEecCCceEEEECCCCceEEeecCCCCCCCCcceEEEEecCCCCceEEEEEcc-eEEEEeC-CCceeeeeeeeeCC
Q psy15182        210 RLKVIYGSADGFHAVDLDSAMVYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCYDN-EGVYVNT-YGKVSKNILLQWGE  287 (366)
Q Consensus       210 ~l~V~~g~~~gF~~idl~~~~~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy~~-~~vfVn~-~G~~sr~~~l~W~~  287 (366)
                      .+.++- ......++|++++.....+.. +   .....++.--++   ..++.+-.+ .-...|. .|+...... .-..
T Consensus       261 ~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~---~~~i~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~  331 (425)
T 1r5m_A          261 LLLSAS-DDGTLRIWHGGNGNSQNCFYG-H---SQSIVSASWVGD---DKVISCSMDGSVRLWSLKQNTLLALSI-VDGV  331 (425)
T ss_dssp             EEEEEE-TTSCEEEECSSSBSCSEEECC-C---SSCEEEEEEETT---TEEEEEETTSEEEEEETTTTEEEEEEE-CTTC
T ss_pred             EEEEEc-CCCEEEEEECCCCccceEecC-C---CccEEEEEECCC---CEEEEEeCCCcEEEEECCCCcEeEecc-cCCc
Confidence            444432 234577889887765544422 1   111223322222   244444433 3333454 333332222 1134


Q ss_pred             CCcEEEEccC--CeEE-EEeCCeEEEEEccCCC
Q psy15182        288 MPTSVAYIGT--GQIM-GWGNKAIEIRSVETGH  317 (366)
Q Consensus       288 ~P~sva~~~~--PYil-~f~~~~IEIR~v~tg~  317 (366)
                      .+.++++ ..  .+++ |-....|.|..+.++.
T Consensus       332 ~i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          332 PIFAGRI-SQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             CEEEEEE-CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             cEEEEEE-cCCCCEEEEEECCCeEEEEECCCCc
Confidence            4566676 42  2443 3445789999999998
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query366
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 87.47
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 86.98
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 86.81
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 83.15
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=87.47  E-value=6.2  Score=32.02  Aligned_cols=243  Identities=12%  Similarity=0.096  Sum_probs=121.6

Q ss_pred             ceeEEEEecCCCceEEeecC-CceEEEEEecCCCeEEEEECCCCeEEEEEchhhhccccccCCcceeeeeeeEeecCCCc
Q psy15182         72 TGLMLLDRSGQGKVYQLVNR-RRFQQMEVLEGQNILVTISGKRNRVRVFYLSWLKSKILKMDGQVERRNGWINVGDLQGA  150 (366)
Q Consensus        72 eGlyll~~~~~~~~~~l~~~-k~v~Ql~Vle~~~lLi~lsGk~~~L~v~~L~~L~~~~~~~~~~l~k~kg~~~v~~~kgc  150 (366)
                      ..+.++|.. .+++.+.+.- ....-+.+-++-+.|++-.+.++.|++|++......         ++     +..  +.
T Consensus        12 ~~v~v~D~~-t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~---------~~-----~~~--~~   74 (301)
T d1l0qa2          12 DNISVIDVT-SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI---------AT-----VPA--GS   74 (301)
T ss_dssp             TEEEEEETT-TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE---------EE-----EEC--SS
T ss_pred             CEEEEEECC-CCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee---------ee-----eec--cc
Confidence            347888864 3345554443 357788888888877665567889999998654310         00     000  01


Q ss_pred             eEEEEEEEcCeEEEEEEECCcEEEEEecCCCccccceeeeecccCCCceEEEEeeecCCeEEEEEecCCceEEEECCCCc
Q psy15182        151 VHFRIVKYERIKFLVIALKDSIEIYAWAPKPYHKFMAFKSFGELGYRPLLVDLTVEEGTRLKVIYGSADGFHAVDLDSAM  230 (366)
Q Consensus       151 ~~f~v~~~~~~~~LcvA~k~~i~iy~w~~~p~~kF~~~Kef~~lp~~p~~v~l~v~~~~~l~V~~g~~~gF~~idl~~~~  230 (366)
                      .-..+.......++.++-...-.++.|......   ..+.+ .....|..+.+. ..+..+.+.........+.+..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~-~dg~~~~~~~~~~~~~~~~~~~~~~  149 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTV-KTGKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKA  149 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEE-ECSSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccccccccccccccccccccceeeecccccce---eeeec-cccccceEEEee-cCCCeeeeeeccccceeeeeccccc
Confidence            111222222334445555555455555543221   22333 233344333221 2344454444333456678888776


Q ss_pred             eEEeecCCCCCCCCcceEEEEecCCCCceEEEEE-cceEEEEeCCCceeeeeeeeeCCCCcEEEEccCC----eEEEEeC
Q psy15182        231 VYDIYLPKHIQGPICPHCIVALPNSNGMQLLLCY-DNEGVYVNTYGKVSKNILLQWGEMPTSVAYIGTG----QIMGWGN  305 (366)
Q Consensus       231 ~~~L~~p~~~~~~~~p~~I~~l~~~~~~E~LLcy-~~~~vfVn~~G~~sr~~~l~W~~~P~sva~~~~P----Yil~f~~  305 (366)
                      ....+..     ...|..+..-++  +..++++- +.-.+.+...........+.-...|.++++ ..+    |+.+...
T Consensus       150 ~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         150 VINTVSV-----GRSPKGIAVTPD--GTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV-NPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEEEEC-----CSSEEEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE-CTTSSEEEEEEECS
T ss_pred             eeeeccc-----CCCceEEEeecc--ccceeeecccccccccccccceeeeecccccCCcceeec-cccccccccccccc
Confidence            6655522     122444433332  23444443 323333333222222223333455777777 333    2333333


Q ss_pred             --CeEEEEEccCCCEEEEEeccCCCceeEEEE--eCCEEEEEeCC
Q psy15182        306 --KAIEIRSVETGHLDGVFMHKKSQRLKFLCE--RNDKVFFSSAK  346 (366)
Q Consensus       306 --~~IEIR~v~tg~Lvq~i~~k~~~~lr~L~~--~~d~vf~as~~  346 (366)
                        +.|.+.++.++++++.+.+.  ..+.-++-  .+..+|+|+..
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~~--~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeeeecCCCeEEEEEcCC--CCEEEEEEeCCCCEEEEEECC
Confidence              46888899999999998743  33444433  33456777643
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure