Psyllid ID: psy15184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Secondary Structure (PSIPRED)
cEEEcccccEEEEEEEccEEEEccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEEcccEEEEEccccEEEEEEEEEEccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEEEEcccEEEccccccccccccccccccccccEEEEEEEEccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHEccccccccccccccccccEEEEHHHHccccccEEEEEEEEHEccEEEEEEEEccc
Coil and Loop (DISEMBL)
miidlpegeheYKFLVdgewkvnpqeVKCIAFLVSpvqenklgsknnklavkkTDFEVFEaldvdsqdttpkkddeysqvippskpwekqpgppilpphlLQVIlnkdtplsceptllpqpnhvmlNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Flexible Loop (DISEMBL)
miidlpegehEYKFLVDGEWKVNPQEVKCIAFLVspvqenklgsknnklavkkTDFEVFEaldvdsqdttpkkddeysqvippskpwekqpgpPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHryrkkyvttllykpi
Low Complexity Region (SEG)
MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Disordered region (IsUnstruct)
*********HEYKFLVDGEWKVNPQEVKCIAFLVSPVQE*********LAVKKTDFEVFEA**********************************LPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLY***
Disordered Region (DISOPRED)
MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEV*************************************LPPHLLQVILN***************NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Disordered Region (DISEMBL)
MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDVDS*************VIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Disordered Region (DISPRO)
MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDVDS*********EYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q5BIS9	270	5'-AMP-activated protein	yes	N/A	0.937	0.555	0.636	3e-50
Q9R078	270	5'-AMP-activated protein	yes	N/A	0.937	0.555	0.630	3e-50
P80386	270	5'-AMP-activated protein	yes	N/A	0.937	0.555	0.630	3e-50
Q5R801	270	5'-AMP-activated protein	yes	N/A	0.937	0.555	0.624	2e-49
Q9Y478	270	5'-AMP-activated protein	yes	N/A	0.937	0.555	0.624	2e-49
O43741	272	5'-AMP-activated protein	no	N/A	0.937	0.551	0.586	6e-48
Q6PAM0	271	5'-AMP-activated protein	no	N/A	0.937	0.553	0.586	2e-47
Q9QZH4	271	5'-AMP-activated protein	no	N/A	0.937	0.553	0.580	8e-47
Q9SCY5	289	SNF1-related protein kina	no	N/A	0.881	0.487	0.339	4e-16
P78789	298	Uncharacterized protein C	yes	N/A	0.856	0.459	0.287	4e-11

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/165 (63%), Positives = 121/165 (73%), Gaps = 15/165 (9%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKKTDFEVF+A
Sbjct: 115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PVVTSQLGTVNNVIQVKKTDFEVFDA 165

Query: 62  LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
           L VDSQ  +   +        Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct: 166 LMVDSQKCSDVSELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query: 116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
            LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct: 226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).
Bos taurus (taxid: 9913)

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 121/165 (73%), Gaps = 15/165 (9%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct: 115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query: 62  LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
           L VDSQ  +   +        Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct: 166 LMVDSQKCSDVSELSSSPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query: 116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
            LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct: 226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 121/165 (73%), Gaps = 15/165 (9%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct: 115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query: 62  LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
           L VDSQ  +   +        Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct: 166 LMVDSQKCSDVSELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query: 116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
            LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct: 226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 120/165 (72%), Gaps = 15/165 (9%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct: 115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query: 62  LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
           L VDSQ  +   +        Y Q     KP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct: 166 LMVDSQKCSDVSELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDP 225

Query: 116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
            LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct: 226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 120/165 (72%), Gaps = 15/165 (9%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct: 115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query: 62  LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
           L VDSQ  +   +        Y Q     KP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct: 166 LMVDSQKCSDVSELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDP 225

Query: 116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
            LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct: 226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score =  189 bits (480), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 17/167 (10%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKK+DFEVF+A
Sbjct: 115 ILDLPEGEHQYKFFVDGQWVHDPSE---------PVVTSQLGTINNLIHVKKSDFEVFDA 165

Query: 62  LDVDSQDTTPKKDDE--------YSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSC 113
           L +DS +++     +        Y Q +   +  E+   PPILPPHLLQVILNKDT +SC
Sbjct: 166 LKLDSMESSETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISC 225

Query: 114 EPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           +P LLP+PNHVMLNHLYALSIKD VMVLS THRY+KKYVTTLLYKPI
Sbjct: 226 DPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 272

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score =  187 bits (476), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 17/167 (10%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKK+DFEVF+A
Sbjct: 114 ILDLPEGEHQYKFFVDGQWVHDPSE---------PVVTSQLGTINNLIHVKKSDFEVFDA 164

Query: 62  LDVDSQDTTPKKDDE--------YSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSC 113
           L +DS +++     +        Y Q +   +  E+   PPILPPHLLQVILNKDT +SC
Sbjct: 165 LKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISC 224

Query: 114 EPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           +P LLP+PNHVMLNHLYALSIKD VMVLS THRY+KKYVTTLLYKPI
Sbjct: 225 DPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 271

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score =  186 bits (471), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 119/167 (71%), Gaps = 17/167 (10%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKK+DFEVF+A
Sbjct: 114 ILDLPEGEHQYKFFVDGQWVHDPSE---------PVVTSQLGTINNLIHVKKSDFEVFDA 164

Query: 62  LDVDSQDTTPKKDDE--------YSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSC 113
           L +DS +++     +        Y Q +   +  E+   PPILPPHLLQVILNKDT +SC
Sbjct: 165 LKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISC 224

Query: 114 EPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           +P LLP+PNHVMLNHLYALS KD VMVLS THRY+KKYVTTLLYKPI
Sbjct: 225 DPALLPEPNHVMLNHLYALSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 15/156 (9%)

Query: 5   LPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEALDV 64
           LP G +EY+F+VDG+W+  P+          P+  +  G+  N L ++    E  +++  
Sbjct: 143 LPSGVYEYRFIVDGQWRHAPE---------LPLARDDAGNTFNILDLQDYVPEDIQSISG 193

Query: 65  DSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHV 124
                +P  ++ YS ++  ++ + K+P  P++PPHL   +LN        P+ LP+P HV
Sbjct: 194 FEPPQSP--ENSYSNLLLGAEDYSKEP--PVVPPHLQMTLLNLPAANPDIPSPLPRPQHV 249

Query: 125 MLNHLYALSIKDG--VMVLSTTHRYRKKYVTTLLYK 158
           +LNHLY    K G  V+ L +THR+  KYVT +LYK
Sbjct: 250 ILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 285

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 44/181 (24%)

Query: 1   MIIDLPEGEHEYKFLVDGEW-------KVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKK 53
           +++ L  G   +KFLVDG W            E     +L     E    S + +L+   
Sbjct: 135 VLLQLRPGTQRFKFLVDGIWCCSSDFPTATDAEGNLYNYLEVEANEKLGASIDERLSQVH 194

Query: 54  TDFEVFEALDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQ----------- 102
           TD  + E            + ++YS  IP             L  + LQ           
Sbjct: 195 TDLPMEE----------KSESEQYSTEIPA-----------FLTSNTLQELKLPKPPSLP 233

Query: 103 -----VILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLY 157
                 ILN +T    + ++LP PNHV+LNHL A + + GV+ LS T RY +KYVTT ++
Sbjct: 234 PHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMF 293

Query: 158 K 158
           K
Sbjct: 294 K 294

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
307204252	282	5'-AMP-activated protein kinase subunit	0.937	0.531	0.723	9e-60
340728331	283	PREDICTED: 5'-AMP-activated protein kina	0.937	0.530	0.716	1e-59
380011767	283	PREDICTED: 5'-AMP-activated protein kina	0.937	0.530	0.716	2e-59
383850456	283	PREDICTED: 5'-AMP-activated protein kina	0.937	0.530	0.716	2e-59
170036495	292	AMPK-beta subunit [Culex quinquefasciatu	0.937	0.513	0.723	3e-59
48113496	283	PREDICTED: 5'-AMP-activated protein kina	0.937	0.530	0.716	3e-59
332017028	281	5'-AMP-activated protein kinase subunit	0.937	0.533	0.716	2e-58
357626332	280	AMP-activated protein kinase beta subuni	0.937	0.535	0.723	2e-58
158186774	282	AMP-activated protein kinase beta subuni	0.937	0.531	0.729	3e-58
156547653	286	PREDICTED: 5'-AMP-activated protein kina	0.937	0.524	0.710	3e-58

>gi|307204252|gb|EFN83049.1| 5'-AMP-activated protein kinase subunit beta-2 [Harpegnathos saltator]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 129/159 (81%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P  +K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 133 IIDLPEGEHQYKFFVDGEWRHDPG-LKIV--------DNGMGSKNNLVSVRKSDFEVFQA 183

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+  T     EY Q IPP KPWEK PGPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 184 LAKDSEGVTSSAQTEYGQEIPPHKPWEKVPGPPILPPHLLQVILNKDTPLSCEPTLLPEP 243

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 244 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 282

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728331|ref|XP_003402479.1| PREDICTED: 5'-AMP-activated protein kinase subunit beta-1-like [Bombus terrestris] gi|350403232|ref|XP_003486737.1| PREDICTED: 5'-AMP-activated protein kinase subunit beta-1-like [Bombus impatiens]

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 130/159 (81%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P ++K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 134 IIDLPEGEHQYKFFVDGEWRHDP-DIKIV--------DNGMGSKNNLVSVRKSDFEVFQA 184

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+  T     EY Q IPP+KPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 185 LAKDSEGVTSSAQTEYGQEIPPNKPWEKVAGPPILPPHLLQVILNKDTPLSCEPTLLPEP 244

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 245 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 283

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011767|ref|XP_003689967.1| PREDICTED: 5'-AMP-activated protein kinase subunit beta-1-like [Apis florea]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 129/159 (81%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P ++K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 134 IIDLPEGEHQYKFFVDGEWRHDP-DIKIV--------DNGMGSKNNLVSVRKSDFEVFQA 184

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+  T     EY Q IPP KPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 185 LAKDSEGVTSSAQTEYGQEIPPHKPWEKVAGPPILPPHLLQVILNKDTPLSCEPTLLPEP 244

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 245 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 283

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850456|ref|XP_003700811.1| PREDICTED: 5'-AMP-activated protein kinase subunit beta-1-like [Megachile rotundata]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 129/159 (81%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P ++K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 134 IIDLPEGEHQYKFFVDGEWRHDP-DIKIV--------DNGMGSKNNLVSVRKSDFEVFQA 184

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+  T     EY Q IPP KPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 185 LAKDSEGVTSSAQTEYGQEIPPHKPWEKVAGPPILPPHLLQVILNKDTPLSCEPTLLPEP 244

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 245 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 283

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036495|ref|XP_001846099.1| AMPK-beta subunit [Culex quinquefasciatus] gi|167879167|gb|EDS42550.1| AMPK-beta subunit [Culex quinquefasciatus]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 133/159 (83%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P+ +K I        EN +G+KNN ++V+++DFEVF+A
Sbjct: 143 IIDLPEGEHQYKFCVDGEWRHDPK-LKNI--------ENDVGTKNNLVSVRQSDFEVFQA 193

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+DT   +  EYSQ IP SKPW K+ GPP+LPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 194 LAKDSEDTGKDETKEYSQDIPTSKPWGKESGPPVLPPHLLQVILNKDTPLSCEPTLLPEP 253

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKDGVMVLS THRYRKKYVTTLLYKPI
Sbjct: 254 NHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPI 292

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48113496|ref|XP_393160.1| PREDICTED: 5'-AMP-activated protein kinase subunit beta-1 isoform 1 [Apis mellifera]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 129/159 (81%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P ++K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 134 IIDLPEGEHQYKFFVDGEWRHDP-DIKIV--------DNGMGSKNNLVSVRKSDFEVFQA 184

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+  T     EY Q IPP KPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 185 LAKDSEGVTSSAQTEYGQEIPPHKPWEKVAGPPILPPHLLQVILNKDTPLSCEPTLLPEP 244

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 245 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 283

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017028|gb|EGI57827.1| 5'-AMP-activated protein kinase subunit beta-2 [Acromyrmex echinatior]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 128/159 (80%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P  +K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 132 IIDLPEGEHQYKFFVDGEWRHDPG-LKIV--------DNGMGSKNNLVSVRKSDFEVFQA 182

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+  T     EY Q IPP KPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 183 LAKDSEGVTSSTQMEYGQEIPPHKPWEKITGPPILPPHLLQVILNKDTPLSCEPTLLPEP 242

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 243 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 281

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626332|gb|EHJ76458.1| AMP-activated protein kinase beta subunit [Danaus plexippus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 127/159 (79%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YK+ VDGEW+ +P  VK +        +N +GSKNN + VK +DFEVF+A
Sbjct: 131 IIDLPEGEHQYKYFVDGEWRHDPT-VKLV--------DNGMGSKNNLVTVKMSDFEVFQA 181

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+        EYSQ IP SKPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 182 LAKDSEGIHSSAQTEYSQEIPQSKPWEKVSGPPILPPHLLQVILNKDTPLSCEPTLLPEP 241

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKDGVMVLS THRYRKKYVTTLLYKPI
Sbjct: 242 NHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPI 280

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158186774|ref|NP_001103403.1| AMP-activated protein kinase beta subunit [Bombyx mori] gi|157073415|gb|ABV09126.1| AMP-activated protein kinase beta subunit [Bombyx mori]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 127/159 (79%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YK+ VDGEW+ +P  VK I        +N +GSKNN + VK +DFEVF+A
Sbjct: 133 IIDLPEGEHQYKYFVDGEWRHDPT-VKVI--------DNGMGSKNNLVTVKMSDFEVFQA 183

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+        EYSQ IP SKPWEK  GPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 184 LAKDSEGIHSSAQTEYSQEIPQSKPWEKVSGPPILPPHLLQVILNKDTPLSCEPTLLPEP 243

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKDGVMVLS THRYRKKYVTTLLYKPI
Sbjct: 244 NHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPI 282

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547653|ref|XP_001604284.1| PREDICTED: 5'-AMP-activated protein kinase subunit beta-2 [Nasonia vitripennis]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/159 (71%), Positives = 128/159 (80%), Gaps = 9/159 (5%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
           IIDLPEGEH+YKF VDGEW+ +P  +K +        +N +GSKNN ++V+K+DFEVF+A
Sbjct: 137 IIDLPEGEHQYKFFVDGEWRHDPG-LKMV--------DNGMGSKNNCVSVRKSDFEVFQA 187

Query: 62  LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
           L  DS+        EY Q +PP KPWEK PGPPILPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct: 188 LAKDSEGIISSAQTEYGQELPPHKPWEKTPGPPILPPHLLQVILNKDTPLSCEPTLLPEP 247

Query: 122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHVMLNHLYALSIKD VMVLS THRYRKKYVTTLLYKPI
Sbjct: 248 NHVMLNHLYALSIKDSVMVLSATHRYRKKYVTTLLYKPI 286

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
FB|FBgn0260972	341	alc "alicorn" [Drosophila mela	0.937	0.439	0.698	2e-56
UNIPROTKB|Q5BIS9	270	PRKAB1 "5'-AMP-activated prote	0.937	0.555	0.636	1.1e-48
UNIPROTKB|E2RH75	270	PRKAB1 "Uncharacterized protei	0.937	0.555	0.630	1.4e-48
MGI|MGI:1336167	270	Prkab1 "protein kinase, AMP-ac	0.937	0.555	0.630	1.4e-48
RGD|71057	270	Prkab1 "protein kinase, AMP-ac	0.937	0.555	0.630	1.8e-48
UNIPROTKB|F1RL45	270	PRKAB1 "5'-AMP-activated prote	0.937	0.555	0.636	2.3e-48
ZFIN|ZDB-GENE-040718-377	268	prkab1a "protein kinase, AMP-a	0.937	0.559	0.642	3.7e-48
UNIPROTKB|Q9Y478	270	PRKAB1 "5'-AMP-activated prote	0.937	0.555	0.624	6e-48
ZFIN|ZDB-GENE-030131-7172	260	prkab1b "protein kinase, AMP-a	0.937	0.576	0.624	6e-48
ZFIN|ZDB-GENE-080723-44	269	prkab2 "protein kinase, AMP-ac	0.937	0.557	0.612	1.2e-47

FB|FBgn0260972 alc "alicorn" [Drosophila melanogaster (taxid:7227)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 111/159 (69%), Positives = 130/159 (81%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             IIDLPEG+H+YKF VDGEWK +P+ +K +        EN  G +NN ++V+++DFEVF+A
Sbjct:   192 IIDLPEGDHQYKFCVDGEWKHDPK-LKSV--------ENAEGQRNNLVSVRESDFEVFQA 242

Query:    62 LDVDSQDTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQP 121
             L  DS++ T   + EYSQ +P  KPWEK  GPP+LPPHLLQVILNKDTPLSCEPTLLP+P
Sbjct:   243 LAKDSENVTNYAEKEYSQEVPQVKPWEKVSGPPVLPPHLLQVILNKDTPLSCEPTLLPEP 302

Query:   122 NHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
             NHVMLNHLYALSIKDGVMVLS THRYRKKYVTTLLYKPI
Sbjct:   303 NHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPI 341

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0070050 "neuron homeostasis" evidence=IMP

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|Q5BIS9 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 105/165 (63%), Positives = 121/165 (73%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKKTDFEVF+A
Sbjct:   115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PVVTSQLGTVNNVIQVKKTDFEVFDA 165

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ      + +      Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   166 LMVDSQKCSDVSELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|E2RH75 PRKAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 104/165 (63%), Positives = 121/165 (73%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct:   115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ      + +      Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   166 LMVDSQKCSDVSELSSSPPGPYHQEPYVSKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1336167 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 104/165 (63%), Positives = 121/165 (73%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct:   115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ      + +      Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   166 LMVDSQKCSDVSELSSSPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

RGD|71057 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 104/165 (63%), Positives = 121/165 (73%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct:   115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ      + +      Y Q    SKP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   166 LMVDSQKCSDVSELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|F1RL45 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 105/165 (63%), Positives = 121/165 (73%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKFLVDG+W  +P E         PV  ++LG+ NN + VKKTDFEVF+A
Sbjct:   115 ILDLPEGEHQYKFLVDGQWTHDPSE---------PVVTSQLGTVNNIIQVKKTDFEVFDA 165

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ      + +      Y Q     KP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   166 LMVDSQKCSDVSELSSSPPGPYHQEPYVWKPEERFKAPPILPPHLLQVILNKDTGISCDP 225

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040718-377 prkab1a "protein kinase, AMP-activated, beta 1 non-catalytic subunit, a" [Danio rerio (taxid:7955)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 106/165 (64%), Positives = 118/165 (71%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG W  +P E         PV  N+LG+ NN + VKKTDFEVF+A
Sbjct:   113 IVDLPEGEHQYKFYVDGLWTHDPTE---------PVVTNQLGTVNNIIQVKKTDFEVFDA 163

Query:    62 LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ  +   D        Y Q     K  EK   PPILPPHLLQVILNKDT +SC+P
Sbjct:   164 LMVDSQKCSDMSDLSSSPPGPYHQDAYTPKQEEKFKSPPILPPHLLQVILNKDTGISCDP 223

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   224 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 268

GO:0005575 "cellular_component" evidence=ND

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|Q9Y478 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 103/165 (62%), Positives = 120/165 (72%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF+A
Sbjct:   115 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVFDA 165

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDSQ      + +      Y Q     KP E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   166 LMVDSQKCSDVSELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDP 225

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   226 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

ZFIN|ZDB-GENE-030131-7172 prkab1b "protein kinase, AMP-activated, beta 1 non-catalytic subunit, b" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 103/165 (62%), Positives = 119/165 (72%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             IIDLPEGEH+YKF VDG W ++P+E         PV  NK G  NN + V+KTDFEVF+A
Sbjct:   105 IIDLPEGEHQYKFYVDGHWTLDPKE---------PVVTNKSGVVNNVIKVRKTDFEVFDA 155

Query:    62 LDVDSQ------DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L  DS+      D +      Y Q    +K  +K   PPILPPHLLQV+LNKDT +SC+P
Sbjct:   156 LKTDSEKCADMSDLSSSPPGPYHQDPYSTKSEDKLRSPPILPPHLLQVLLNKDTGISCDP 215

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
             TLLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVTTLLYKPI
Sbjct:   216 TLLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 260

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

ZFIN|ZDB-GENE-080723-44 prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Danio rerio (taxid:7955)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 101/165 (61%), Positives = 121/165 (73%)

Query:     2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKK+DFEVF+A
Sbjct:   113 ILDLPEGEHQYKFFVDGQWLHDPSE---------PVITSQLGTINNLIQVKKSDFEVFDA 163

Query:    62 LDVDSQDTTPKKD------DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEP 115
             L VDS + +   D        Y Q +   +P E+   PPILPPHLLQVILNKDT +SC+P
Sbjct:   164 LQVDSLECSDTSDLSSSPPGPYGQEVYMFRPEERFKAPPILPPHLLQVILNKDTNVSCDP 223

Query:   116 TLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKYVT+LLYKPI
Sbjct:   224 ALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKYVTSLLYKPI 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y478	AAKB1_HUMAN	No assigned EC number	0.6242	0.9375	0.5555	yes	N/A
Q5R801	AAKB1_PONAB	No assigned EC number	0.6242	0.9375	0.5555	yes	N/A
Q5BIS9	AAKB1_BOVIN	No assigned EC number	0.6363	0.9375	0.5555	yes	N/A
P80386	AAKB1_RAT	No assigned EC number	0.6303	0.9375	0.5555	yes	N/A
Q9R078	AAKB1_MOUSE	No assigned EC number	0.6303	0.9375	0.5555	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
pfam04739	94	pfam04739, AMPKBI, 5'-AMP-activated protein kinase	4e-40
smart01010	100	smart01010, AMPKBI, 5'-AMP-activated protein kinas	1e-38
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-10

>gnl|CDD|218238 pfam04739, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain

 Score =  130 bits (328), Expect = 4e-40
 Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 5/92 (5%)

Query: 74  DDEYSQVIP-----PSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNH 128
              YS  IP          E    PP LPPHLL+ ILNK T  + +P+LLP PNHV+LNH
Sbjct: 3   PSSYSNEIPANFQDLDFEEEFAKEPPSLPPHLLKTILNKPTASTDDPSLLPIPNHVVLNH 62

Query: 129 LYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           LY  SIK+GV+ L  T RY+ KYVTT+LYKP+
Sbjct: 63  LYTSSIKNGVLALGATTRYKSKYVTTVLYKPL 94

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family. Length = 94

>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain

 Score =  126 bits (319), Expect = 1e-38
 Identities = 49/100 (49%), Positives = 60/100 (60%), Gaps = 10/100 (10%)

Query: 71  PKKDDEYSQVIPP---------SKPWEKQPGPPILPPHLLQVILNK-DTPLSCEPTLLPQ 120
               + Y+  IP            P EK   PP LPPHL +VILN   T    +P+LLP 
Sbjct: 1   QSPPESYTNEIPACFTDDDFIEESPEEKWKEPPALPPHLEKVILNTSSTATREDPSLLPI 60

Query: 121 PNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           PNHV+LNHLY  SIKDGV+ ++ T RYR KYVT +LYKP+
Sbjct: 61  PNHVVLNHLYTSSIKDGVLAVAATTRYRGKYVTQVLYKPL 100

This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family. Length = 100

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 9/46 (19%)

Query: 2  IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNN 47
           ++LP G +EYKF+VDGEW  +P           P   ++ G+ NN
Sbjct: 40 TVELPPGRYEYKFIVDGEWVHDPDL---------PTVTDEFGNLNN 76

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG1616|consensus	289		100.0
PF04739	100	AMPKBI: 5'-AMP-activated protein kinase beta subun	100.0
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.49
cd02861	82	E_set_proteins_like E or "early" set-like proteins	98.93
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	96.88
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	94.26

>KOG1616|consensus

Probab=100.00  E-value=9.5e-43  Score=296.91  Aligned_cols=151  Identities=63%  Similarity=1.025  Sum_probs=140.2

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccCC--hhhhhhcccC--------CCCCC
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTD--FEVFEALDVD--------SQDTT   70 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d--~e~~~al~~d--------s~~~~   70 (160)
                      ++++||+|.|+|||+|||+|++|++. |        +++|+.|+.||+|+|.+.+  +++++++.++        +.+..
T Consensus       120 ~~~dL~~g~~~~kf~vdge~~~s~~~-p--------ta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~~s~e~~  190 (289)
T KOG1616|consen  120 TILDLPPGEHEYKFIVDGEWRHDPDL-P--------TAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHSESSEVP  190 (289)
T ss_pred             eeEecCCceEEEEEecCCceecCCCC-c--------ccccccCCcccceEecCccccchhhhhhhhhccccccccccccC
Confidence            47899999999999999999999999 7        8999999999999999999  9998888776        33433


Q ss_pred             CC-------CCCCCcccCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEE
Q psy15184         71 PK-------KDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLST  143 (160)
Q Consensus        71 ~~-------~~~~Y~~eip~~~~~~k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~  143 (160)
                      ..       +.++|+|++|..++++++..||.|||||.++|||+++..+|++..+++|+||+|||||+.+||++++++++
T Consensus       191 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~sik~~~~~~~~  270 (289)
T KOG1616|consen  191 NLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSIKDGVMVLSF  270 (289)
T ss_pred             CCccccccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhccCCCeeEecc
Confidence            33       38899999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             eeEecceeEEEEEeeeC
Q psy15184        144 THRYRKKYVTTLLYKPI  160 (160)
Q Consensus       144 T~Ry~~KyvT~vlYkp~  160 (160)
                      ||||++||||+++|||+
T Consensus       271 ~~r~~~k~vt~~lyk~~  287 (289)
T KOG1616|consen  271 THRYKKKYVTTGLYKPL  287 (289)
T ss_pred             eecccccceeEEeeeec
Confidence            99999999999999996

>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=5.2e-37  Score=226.40  Aligned_cols=89  Identities=56%  Similarity=0.918  Sum_probs=66.8

Q ss_pred             CCCCCCcccCCCCC----------CCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEE
Q psy15184         72 KKDDEYSQVIPPSK----------PWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVL  141 (160)
Q Consensus        72 ~~~~~Y~~eip~~~----------~~~k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l  141 (160)
                      +++++|+++||+..          .++..+.||.|||||+++|||+++...++++.||+|+||+|||||+++||+||+|+
T Consensus         2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~ik~~v~al   81 (100)
T PF04739_consen    2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSIKDGVLAL   81 (100)
T ss_dssp             -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEEBTTEEEE
T ss_pred             CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcccCCCeEEE
Confidence            46788999999974          13455679999999999999998878899999999999999999999999999999


Q ss_pred             EEeeEecceeEEEEEeeeC
Q psy15184        142 STTHRYRKKYVTTLLYKPI  160 (160)
Q Consensus       142 ~~T~Ry~~KyvT~vlYkp~  160 (160)
                      |+|||||+||||+|||||+
T Consensus        82 ~~T~Ryk~KyVT~vlYkP~  100 (100)
T PF04739_consen   82 GTTHRYKSKYVTTVLYKPI  100 (100)
T ss_dssp             EEEEEETTEEEEEEEEEE-
T ss_pred             EEEEEecceEEEEEEecCC
Confidence            9999999999999999996

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.49  E-value=3e-14  Score=100.03  Aligned_cols=41  Identities=37%  Similarity=0.775  Sum_probs=38.2

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEE
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLA   50 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~   50 (160)
                      ++++||+|.|+|||+|||+|++|+++ +        ++.|++|+.||+|+
T Consensus        39 ~~~~L~~g~y~YkF~Vdg~w~~d~~~-~--------~~~d~~G~~NN~i~   79 (79)
T cd02859          39 ATLRLPPGKYQYKFIVDGEWRHSPDL-P--------TETDDEGNVNNVID   79 (79)
T ss_pred             EEEEcCCCCEEEEEEECCEEEeCCCC-C--------ccCCCCCcEeeeEC
Confidence            36899999999999999999999999 7        78999999999985

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=98.93  E-value=1.3e-09  Score=76.40  Aligned_cols=41  Identities=39%  Similarity=0.810  Sum_probs=36.0

Q ss_pred             CEEecCCceEEEEEEECCEEE-ECCCCccccccccCceeeCCCCCcceEE
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWK-VNPQEVKCIAFLVSPVQENKLGSKNNKL   49 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~-~~~~~~p~~~~~~~p~~~d~~G~~nN~i   49 (160)
                      +++.|++|.|+|||+|||.|. .||.. ++       ...|++|+.||+|
T Consensus        40 ~~~~l~~G~y~Ykf~vdg~~~~~DP~~-~~-------~~~~~~g~~n~v~   81 (82)
T cd02861          40 VTVELRPGRYEYKFVVDGEWVIVDPNA-AA-------YVDDGFGGKNAVF   81 (82)
T ss_pred             EEEeCCCCcEEEEEEECCEEeeCCCCC-Cc-------eecCCCCccceEc
Confidence            367899999999999999999 89988 43       6899999999987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=96.88  E-value=0.0016  Score=45.94  Aligned_cols=23  Identities=39%  Similarity=0.683  Sum_probs=21.3

Q ss_pred             ecCCceEEEEEEECCEEEECCCC
Q psy15184          4 DLPEGEHEYKFLVDGEWKVNPQE   26 (160)
Q Consensus         4 ~Lp~G~h~ykFiVDG~w~~~~~~   26 (160)
                      .|.+|.|+|+|+|||.|+.||..
T Consensus        48 ~l~~g~Y~Y~~~vdg~~~~DP~s   70 (85)
T cd02858          48 PLAPGIYTYSFLVDGVRVIDPSN   70 (85)
T ss_pred             CCCCcEEEEEEEECCeEecCCCC
Confidence            47788999999999999999998

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=94.26  E-value=0.038  Score=36.70  Aligned_cols=24  Identities=33%  Similarity=0.685  Sum_probs=19.9

Q ss_pred             EecCC-ceEEEEEEECCEEEECCCC
Q psy15184          3 IDLPE-GEHEYKFLVDGEWKVNPQE   26 (160)
Q Consensus         3 ~~Lp~-G~h~ykFiVDG~w~~~~~~   26 (160)
                      +.+.. |.++|||.|||.|..++..
T Consensus        45 v~~~~~~~~~Y~~~v~~~~~~~~~~   69 (83)
T cd02688          45 LPLPSPGKYQYKYVLDGGKGPDEGE   69 (83)
T ss_pred             EcCCCCCCeEEEEEEeCCCCCCCCC
Confidence            45555 8999999999999888776

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
4eag_B	85	Co-Crystal Structure Of An Chimeric Ampk Core With		3e-32
4eai_B	85	Co-Crystal Structure Of An Ampk Core With Amp Lengt		8e-31
2v8q_B	87	Crystal Structure Of The Regulatory Fragment Of Mam		1e-30
4eak_B	72	Co-Crystal Structure Of An Ampk Core With Atp Lengt		2e-30
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		3e-11
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		3e-11
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		8e-11
2oox_B	97	Crystal Structure Of The Adenylate Sensor From Amp-		9e-11
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		2e-10
3t4n_B	113	Structure Of The Regulatory Fragment Of Saccharomyc		5e-10

>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp Length = 85

Iteration: 1
 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)
Query: 84  SKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLST 143
           SKP E+   PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIKDGVMVLS 
Sbjct: 9   SKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDGVMVLSA 68
Query: 144 THRYRKKYVTTLLYKPI 160
           THRY+KKYVTTLLYKPI
Sbjct: 69  THRYKKKYVTTLLYKPI 85

>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp Length = 85

Iteration: 1
 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/84 (75%), Positives = 70/84 (83%)
Query: 77  YSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKD 136
           Y Q +   +  E+   PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIKD
Sbjct: 2   YGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD 61
Query: 137 GVMVLSTTHRYRKKYVTTLLYKPI 160
            VMVLS THRY+KKYVTTLLYKPI
Sbjct: 62  SVMVLSATHRYKKKYVTTLLYKPI 85

>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 87

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/84 (75%), Positives = 70/84 (83%)
Query: 77  YSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKD 136
           Y Q +   +  E+   PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIKD
Sbjct: 4   YGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD 63
Query: 137 GVMVLSTTHRYRKKYVTTLLYKPI 160
            VMVLS THRY+KKYVTTLLYKPI
Sbjct: 64  SVMVLSATHRYKKKYVTTLLYKPI 87

>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp Length = 72

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 65/69 (94%)
Query: 92  GPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKY 151
            PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIKDGVMVLS THRY+KKY
Sbjct: 4   APPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDGVMVLSATHRYKKKY 63
Query: 152 VTTLLYKPI 160
           VTTLLYKPI
Sbjct: 64  VTTLLYKPI 72

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 9/58 (15%)
Query: 2  IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
          I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF
Sbjct: 48 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVF 96

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 9/59 (15%)
Query: 1  MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
           I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF
Sbjct: 47 AILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVF 96

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 9/58 (15%)
Query: 2  IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
          I+DLPEGEH+YKF VDG+W  +P E         PV  ++LG+ NN + VKK+DFEVF
Sbjct: 48 ILDLPEGEHQYKFFVDGQWVHDPSE---------PVVTSQLGTINNLIHVKKSDFEVF 96

>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 97

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 102 QVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYK 158
           + ILN +T    + ++LP PNHV+LNHL A + + GV+ LS T RY +KYVTT ++K
Sbjct: 37  KCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFK 93

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 93  PPILPPHLLQVILNK-----DTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRY 147
           PP LPP L  VILNK     D         LP PNHV+LNHL   SIK   + +++  RY
Sbjct: 180 PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRY 239
Query: 148 RKKYVTTLLYKPI 160
           ++KYVT +LY PI
Sbjct: 240 KQKYVTQILYTPI 252

>pdb|3T4N|B Chain B, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 113

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 93  PPILPPHLLQVILNK-----DTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRY 147
           PP LPP L  VILNK     D         LP PNHV+LNHL   SIK   + +++  RY
Sbjct: 38  PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRY 97
Query: 148 RKKYVTTLLYKPI 160
           ++KYVT +LY PI
Sbjct: 98  KQKYVTQILYTPI 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2v8q_B	87	5'-AMP-activated protein kinase subunit beta-2; ph	7e-38
2qrd_B	97	SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina	3e-34
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	6e-33
3t4n_B	113	SNF1 protein kinase subunit beta-2; CBS domain, nu	6e-32
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	2e-11
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	2e-10

>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Length = 87

 Score =  123 bits (311), Expect = 7e-38
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 76  EYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIK 135
            Y Q +   +  E+   PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIK
Sbjct: 3   PYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIK 62

Query: 136 DGVMVLSTTHRYRKKYVTTLLYKPI 160
           D VMVLS THRY+KKYVTTLLYKPI
Sbjct: 63  DSVMVLSATHRYKKKYVTTLLYKPI 87

>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Length = 97

 Score =  115 bits (288), Expect = 3e-34
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 5/94 (5%)

Query: 72  KKDDEYSQVIP-----PSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVML 126
            + ++YS  IP      +    K P PP LPPHL + ILN +T    + ++LP PNHV+L
Sbjct: 2   SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLL 61

Query: 127 NHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           NHL A + + GV+ LS T RY +KYVTT ++K  
Sbjct: 62  NHLAAANTQLGVLALSATTRYHRKYVTTAMFKNF 95

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  116 bits (290), Expect = 6e-33
 Identities = 54/217 (24%), Positives = 80/217 (36%), Gaps = 67/217 (30%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
            + L  G H ++F+VD E +V+            P   +++G+  N + V++ +      
Sbjct: 45  KLRLLPGTHRFRFIVDNELRVSDFL---------PTATDQMGNFVNYIEVRQPEKNPTNE 95

Query: 62  LDVDSQ----------------------------------DTTPKKDDEYSQVIP----- 82
                +                                  D +P+   EY+  IP     
Sbjct: 96  KIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTD 155

Query: 83  --------------PSKPWEKQPGPPILPPHLLQVILNK-----DTPLSCEPTLLPQPNH 123
                          S        PP LPP L  VILNK     D         LP PNH
Sbjct: 156 PSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNH 215

Query: 124 VMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           V+LNHL   SIK   + +++  RY++KYVT +LY PI
Sbjct: 216 VVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI 252

>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Length = 113

 Score =  109 bits (274), Expect = 6e-32
 Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 68  DTTPKKDDEYSQVIPPSKPWEKQPGPPILPPHLLQVILNK-----DTPLSCEPTLLPQPN 122
           D +  +   Y+     S        PP LPP L  VILNK     D         LP PN
Sbjct: 13  DPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPN 72

Query: 123 HVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           HV+LNHL   SIK   + +++  RY++KYVT +LY PI
Sbjct: 73  HVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI 110

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 2   IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA 61
             +LPEG+ EYK+++DGEW  N  E             NK G  NN   V      V   
Sbjct: 211 KRELPEGQFEYKYIIDGEWTHNEAEPFI--------GPNKDGHTNNYAKVVDDPTSVDGT 262

Query: 62  LDVDSQDTTPKKDDE 76
                    P+  +E
Sbjct: 263 TRERLSSEDPELLEE 277

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 9/57 (15%)

Query: 3  IDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
          +DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF
Sbjct: 49 LDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVF 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	100.0
2v8q_B	87	5'-AMP-activated protein kinase subunit beta-2; ph	100.0
2qrd_B	97	SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina	100.0
3t4n_B	113	SNF1 protein kinase subunit beta-2; CBS domain, nu	100.0
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.48
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.38
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	98.38
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	97.25
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	90.67
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	82.62

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=100.00  E-value=2.5e-53  Score=354.58  Aligned_cols=151  Identities=34%  Similarity=0.562  Sum_probs=93.0

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccCChhhhhh-------------------
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVFEA-------------------   61 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~e~~~a-------------------   61 (160)
                      +++.||+|.|+|||+|||+|++|++. +        ++.|+.|+.||+|+|.+.+....+.                   
T Consensus        44 ~tv~LppG~y~YKFiVDG~w~~Dp~~-p--------~~~d~~G~~nNvi~V~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  114 (252)
T 2qlv_B           44 VKLRLLPGTHRFRFIVDNELRVSDFL-P--------TATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSS  114 (252)
T ss_dssp             EEEEECSEEEEEEEEETTEEECCTTS-C--------EEBCSSCCCEEEEEECC---------------------------
T ss_pred             EEEECCCCEEEEEEEECCEEEeCCCC-C--------EEecCCCcCcceeeccCccccccccccccccccccccccccccc
Confidence            36899999999999999999999999 7        8999999999999999854222110                   


Q ss_pred             ----cccCCC-----------CCCCCCCCCCcccCCCCCC-------------------CCCCCCCCCCCcccccccCCC
Q psy15184         62 ----LDVDSQ-----------DTTPKKDDEYSQVIPPSKP-------------------WEKQPGPPILPPHLLQVILNK  107 (160)
Q Consensus        62 ----l~~ds~-----------~~~~~~~~~Y~~eip~~~~-------------------~~k~~~PP~LPphL~~~iLN~  107 (160)
                          +.++.+           +.+.++.++|+|+||..+.                   ...++.||+|||||+++|||+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~y~~eiP~~~~~~~~~e~~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~  194 (252)
T 2qlv_B          115 IALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILNK  194 (252)
T ss_dssp             -------------------------------CCCCCGGGTCHHHHHHHHHHHCC-----------CCCCCCC--------
T ss_pred             cccccccCccccccccccccccCCCCCcccccccCCchhcccchhhhhhhcccccccccccccCCCCCCChhhcchhcCC
Confidence                111100           2234568899999998521                   113468999999999999999


Q ss_pred             CCCC-----CCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEEEEeeeC
Q psy15184        108 DTPL-----SCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI  160 (160)
Q Consensus       108 ~~~~-----~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~vlYkp~  160 (160)
                      ++++     .|++++||+|+||||||||++|||+||||||||||||+||||||||||+
T Consensus       195 ~~~~~~~~~~~~~~~Lp~PnHVvLNHL~~~sIk~~vlal~~T~RYk~KyVTtvlYkP~  252 (252)
T 2qlv_B          195 YYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI  252 (252)
T ss_dssp             --------------------CCSCCBCEECCCCSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCccccccccCCcccCCCCCEEEeeeEEEecccCCEEEEeeeeeecceeEEEEEEeeC
Confidence            8765     3789999999999999999999999999999999999999999999997

>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B*

Probab=100.00  E-value=2.8e-39  Score=231.79  Aligned_cols=86  Identities=73%  Similarity=1.156  Sum_probs=70.6

Q ss_pred             CCCcccCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEE
Q psy15184         75 DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTT  154 (160)
Q Consensus        75 ~~Y~~eip~~~~~~k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~  154 (160)
                      ++|+|++|...++++++.||.|||||+++|||++++.+||++.||+|+||+|||||++|||++++|+|+|||||+||||+
T Consensus         2 ~~y~q~~~~~~~~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik~~v~alg~T~Ry~~KyVT~   81 (87)
T 2v8q_B            2 GPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTT   81 (87)
T ss_dssp             ---CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECCCBTTEEEEEEEEEETTEEEEE
T ss_pred             CcccccCCCCCccccccCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeEEEecccCCeEEEeeeeeecceeEEE
Confidence            47999999998888888899999999999999988888999999999999999999999999999999999999999999


Q ss_pred             EEeeeC
Q psy15184        155 LLYKPI  160 (160)
Q Consensus       155 vlYkp~  160 (160)
                      |||||+
T Consensus        82 vlYkP~   87 (87)
T 2v8q_B           82 LLYKPI   87 (87)
T ss_dssp             EEEEEC
T ss_pred             EEEeeC
Confidence            999997

>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B*

Probab=100.00  E-value=9.3e-39  Score=233.02  Aligned_cols=89  Identities=46%  Similarity=0.783  Sum_probs=80.7

Q ss_pred             CCCCCCcccCCCCC---CCC--CCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeE
Q psy15184         72 KKDDEYSQVIPPSK---PWE--KQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHR  146 (160)
Q Consensus        72 ~~~~~Y~~eip~~~---~~~--k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~R  146 (160)
                      ++.++|+||||...   .++  +++.||.|||||+++|||++++++||++.||+|+||+|||||++|||++++|+|+|||
T Consensus         2 ~~~~~y~~eIP~~~~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~d~~~lp~P~HVvLNHLy~~sik~~vlalg~T~R   81 (97)
T 2qrd_B            2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTR   81 (97)
T ss_dssp             --CCCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECCSSSSEEEEEEEE
T ss_pred             CccccccccCChhhhcccccccccCCCCCCChhhcccccCCCCCCCCCcccCCCCCEEEeeeeeeecccCCeEEEeeeee
Confidence            46788999999986   455  7788999999999999999888778999999999999999999999999999999999


Q ss_pred             ecceeEEEEEeeeC
Q psy15184        147 YRKKYVTTLLYKPI  160 (160)
Q Consensus       147 y~~KyvT~vlYkp~  160 (160)
                      ||+||||+|||||+
T Consensus        82 y~~KyVT~vlYkP~   95 (97)
T 2qrd_B           82 YHRKYVTTAMFKNF   95 (97)
T ss_dssp             ETTEEEEEEEEECC
T ss_pred             eeceeEEEEEEecC
Confidence            99999999999996

>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B*

Probab=100.00  E-value=8.9e-35  Score=216.86  Aligned_cols=72  Identities=47%  Similarity=0.749  Sum_probs=65.9

Q ss_pred             CCCCCCCCCcccccccCCCCCCC-----CCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEEEEeeeC
Q psy15184         89 KQPGPPILPPHLLQVILNKDTPL-----SCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI  160 (160)
Q Consensus        89 k~~~PP~LPphL~~~iLN~~~~~-----~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~vlYkp~  160 (160)
                      +++.||.|||||+++|||+++..     .|+++.||+|+||+|||||++|||++++|+|+|||||+||||+|||||+
T Consensus        34 ~~~~PP~LPphL~~~iLN~~~~~~~~~~~d~~~~Lp~P~HVvLNHLy~~sik~~vlalg~T~RYk~KyVT~VlYKP~  110 (113)
T 3t4n_B           34 SWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI  110 (113)
T ss_dssp             GGGSCCBCCGGGCHHHHHHHHHHHHHHHHHCCSCCCCCCGGGTTBCEECCCBTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cCCCCCCCChhhcccccCCCccccccccCCCcccCCCCCeEeeeeeeeecccCceEEEeeeeeeeceeEEEEEEeec
Confidence            45789999999999999986432     3678999999999999999999999999999999999999999999996

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.48  E-value=3.1e-14  Score=102.38  Aligned_cols=49  Identities=61%  Similarity=1.133  Sum_probs=45.1

Q ss_pred             EEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccCChhhh
Q psy15184          2 IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF   59 (160)
Q Consensus         2 i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~e~~   59 (160)
                      ++.|++|.|+|||+|||+|++||.. +        ++.|+.|+.||+|+|.++++++|
T Consensus        48 ~v~l~~G~~~YKf~VdG~~~~DP~~-~--------~~~d~~G~~Nnvi~V~~~d~~~~   96 (96)
T 1z0n_A           48 ILDLPEGEHQYKFFVDGQWTHDPSE-P--------IVTSQLGTVNNIIQVKKTDFEVF   96 (96)
T ss_dssp             EEEECSEEEEEEEEETTEEECCTTS-C--------EEECTTSCEEEEEEECSCTTEEC
T ss_pred             EEEccCCCEEEEEEECCeEEcCCCC-C--------eEECCCCCEeEEEEEcCCCcCcC
Confidence            5689999999999999999999999 7        78999999999999999888754

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.38  E-value=2.3e-13  Score=114.38  Aligned_cols=46  Identities=41%  Similarity=0.723  Sum_probs=40.9

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccC
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKT   54 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~   54 (160)
                      +++.||+|.|+|||+|||+|++|++. +.       +..|++|+.||+|.|.+.
T Consensus       210 ~~~~L~~G~y~YkFiVDG~w~~d~~~-~~-------~~~d~~G~~nn~~~v~~~  255 (294)
T 3nme_A          210 LKRELPEGQFEYKYIIDGEWTHNEAE-PF-------IGPNKDGHTNNYAKVVDD  255 (294)
T ss_dssp             EEEEECSEEEEEEEEETTEEECCTTS-CE-------ECSCTTSCCEEEEEECCC
T ss_pred             EEEECCCceEEEEEEECCEEeeCCCC-Ce-------eeECCCCCEeEEEEECCC
Confidence            36899999999999999999999999 51       457999999999999973

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=98.38  E-value=1.6e-07  Score=86.36  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=35.8

Q ss_pred             CEEecCCceEEEEEEECCEEE--ECCCCccccccccCceeeCCCCCcceEE
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWK--VNPQEVKCIAFLVSPVQENKLGSKNNKL   49 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~--~~~~~~p~~~~~~~p~~~d~~G~~nN~i   49 (160)
                      ++++||||+|||||+|||+|+  +|++. +...     .+.|++|..|++.
T Consensus        58 ~~~~L~~g~~~y~f~vdg~~~~~~d~~~-~~~~-----y~~~~~g~~n~~~  102 (696)
T 4aee_A           58 VYLKLWPGEYGYGFQIDNDFENVLDPDN-EEKK-----CVHTSFFPEYKKC  102 (696)
T ss_dssp             EEEEECSEEEEEEEEETTCCSCCCCTTC-CCEE-----EEECSSCTTSEEE
T ss_pred             EEEEcCCceEEEEEEECCEEeecCCCCC-Cccc-----ccccCCcccccee
Confidence            479999999999999999999  77888 4211     3689999999984

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=97.25  E-value=0.00015  Score=65.79  Aligned_cols=27  Identities=37%  Similarity=0.802  Sum_probs=24.4

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCc
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEV   27 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~   27 (160)
                      +.++||||+|+|||+|||+|..|+..+
T Consensus        55 ~~v~L~~G~y~Y~f~vdg~~~~dp~n~   81 (645)
T 4aef_A           55 IKIALPEGVWHYAFSIDGKFVLDPDNP   81 (645)
T ss_dssp             EEEEECSEEEEEEEEETTEEECCTTCC
T ss_pred             EEEEeCCceEEEEEEECCeEecCCCCC
Confidence            368999999999999999999998873

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=90.67  E-value=0.14  Score=37.94  Aligned_cols=15  Identities=27%  Similarity=0.569  Sum_probs=13.3

Q ss_pred             EEecCCce-EEEEEEE
Q psy15184          2 IIDLPEGE-HEYKFLV   16 (160)
Q Consensus         2 i~~Lp~G~-h~ykFiV   16 (160)
                      .++||.|. ++|||++
T Consensus        60 ~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A           60 TIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             EEEECTTCCEEEEEEE
T ss_pred             EEEcCCCCcEEEEEEE
Confidence            57899995 9999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=82.62  E-value=0.7  Score=39.12  Aligned_cols=48  Identities=15%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             EEecCCceE-EEEEEEC------------------------CEEEECCCCccccccccCceeeCCCCCcceEEEcccCCh
Q psy15184          2 IIDLPEGEH-EYKFLVD------------------------GEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDF   56 (160)
Q Consensus         2 i~~Lp~G~h-~ykFiVD------------------------G~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~   56 (160)
                      ++.||+|-| .|+|+||                        |..+.||..+.        ...+..|...+++++.+...
T Consensus        83 t~~l~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~--------~~~~~~~~~~s~~~~p~~~~  154 (403)
T 3c8d_A           83 TTQLNANWRGSYCFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQ--------SWKGGLGHAVSALEMPQAPL  154 (403)
T ss_dssp             EEEEETTCEEEEEEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSS--------EECCSSSSCEEEEECTTCCC
T ss_pred             EEEECCCcEEEEEEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCC--------CCCCCCCcccccccCCCCCc
Confidence            458999999 9999999                        66677777722        23344588889999987654


Q ss_pred             h
Q psy15184         57 E   57 (160)
Q Consensus        57 e   57 (160)
                      +
T Consensus       155 ~  155 (403)
T 3c8d_A          155 Q  155 (403)
T ss_dssp             C
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d2v8qb1	83	d.353.1.1 (B:190-272) 5'-AMP-activated protein kin	2e-38
d2qrdb1	93	d.353.1.1 (B:205-297) AMP-activated protein kinase	1e-37
d2qlvb2	107	d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisi	1e-31
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	1e-13
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-05

>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 2e-38
 Identities = 62/82 (75%), Positives = 69/82 (84%)

Query: 79  QVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGV 138
           Q +   +  E+   PPILPPHLLQVILNKDT +SC+P LLP+PNHVMLNHLYALSIKD V
Sbjct: 2   QEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSV 61

Query: 139 MVLSTTHRYRKKYVTTLLYKPI 160
           MVLS THRY+KKYVTTLLYKPI
Sbjct: 62  MVLSATHRYKKKYVTTLLYKPI 83

>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Length = 93

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  122 bits (307), Expect = 1e-37
 Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 5/90 (5%)

Query: 76  EYSQVIP-----PSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLY 130
           +YS  IP      +    K P PP LPPHL + ILN +T    + ++LP PNHV+LNHL 
Sbjct: 3   QYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLA 62

Query: 131 ALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
           A + + GV+ LS T RY +KYVTT ++K  
Sbjct: 63  AANTQLGVLALSATTRYHRKYVTTAMFKNF 92

>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 107

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  107 bits (268), Expect = 1e-31
 Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 75  DEYSQVIPPSKPWEKQPGPPILPPHLLQVILNK-----DTPLSCEPTLLPQPNHVMLNHL 129
               Q       W     PP LPP L  VILNK     D         LP PNHV+LNHL
Sbjct: 20  TLDRQQSNTDTSW---LTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHL 76

Query: 130 YALSIKDGVMVLSTTHRYRKKYVTTLLYKPI 160
              SIK   + +++  RY++KYVT +LY PI
Sbjct: 77  VTSSIKHNTLCVASIVRYKQKYVTQILYTPI 107

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 9/58 (15%)

Query: 2  IIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF 59
          I+DLPEGEH+YKF VDG+W  +P E         P+  ++LG+ NN + VKKTDFEVF
Sbjct: 39 ILDLPEGEHQYKFFVDGQWTHDPSE---------PIVTSQLGTVNNIIQVKKTDFEVF 87

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 1  MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKK 53
          + + L  G H ++F+VD E +V+            P   +++G+  N + V++
Sbjct: 44 VKLRLLPGTHRFRFIVDNELRVSDFL---------PTATDQMGNFVNYIEVRQ 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d2v8qb1	83	5'-AMP-activated protein kinase subunit beta-2 {Hu	100.0
d2qrdb1	93	AMP-activated protein kinase beta subunit {Schizos	100.0
d2qlvb2	107	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	100.0
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.66
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.59
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	94.75

>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: 5'-AMP-activated protein kinase subunit beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=222.89  Aligned_cols=83  Identities=75%  Similarity=1.168  Sum_probs=69.4

Q ss_pred             cccCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEEEEe
Q psy15184         78 SQVIPPSKPWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLY  157 (160)
Q Consensus        78 ~~eip~~~~~~k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~vlY  157 (160)
                      |||++.+..+++.+.||.|||||++++||++++..++++.||+|+||||||||++|||++++|+|+|||||+||||+|||
T Consensus         1 gq~~~~~~~ed~~k~PP~lPp~L~~~iLN~~~~~~~~~~~lp~P~HVvLNHLy~~sik~~v~alg~T~Ry~~KyVT~VlY   80 (83)
T d2v8qb1           1 GQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLY   80 (83)
T ss_dssp             CCCCCCCCCCCSSSSCCBSCSSCCSEEECCCCC----------CCTTCTTBCEECCCBTTEEEEEEEEEETTEEEEEEEE
T ss_pred             CCcccccChhhccCCCCCCChhhceeccCCCCCCCCCcccCCCCCEEEeeeeeeccccCceEEEEeEEEecceeEEEEEE
Confidence            68999987777777899999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             eeC
Q psy15184        158 KPI  160 (160)
Q Consensus       158 kp~  160 (160)
                      |||
T Consensus        81 kPl   83 (83)
T d2v8qb1          81 KPI   83 (83)
T ss_dssp             EEC
T ss_pred             eeC
Confidence            997

>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=2.5e-38  Score=227.10  Aligned_cols=86  Identities=48%  Similarity=0.771  Sum_probs=79.5

Q ss_pred             CCCcccCCCCC-----CCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecc
Q psy15184         75 DEYSQVIPPSK-----PWEKQPGPPILPPHLLQVILNKDTPLSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRK  149 (160)
Q Consensus        75 ~~Y~~eip~~~-----~~~k~~~PP~LPphL~~~iLN~~~~~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~  149 (160)
                      ++|+||||.+.     .+.+++.||+|||||+++|||++++..|+++.||+|+||||||||++|||++++|+|+|||||+
T Consensus         2 ~~y~~~iP~~~~~~~~~~~~~~~PP~lPphL~~tiLN~~~~~~d~~~~Lp~P~HVvLNHLy~~sik~~vlalg~T~Ry~~   81 (93)
T d2qrdb1           2 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHR   81 (93)
T ss_dssp             CCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECCSSSSEEEEEEEEETT
T ss_pred             cchhhhcChhhccccchhhccCCCCCCChHHceeccCCCCCCCCCcccCCCCCEEEeeheeeccccCceEEEEeEEEecc
Confidence            57999999852     2346678999999999999999888889999999999999999999999999999999999999


Q ss_pred             eeEEEEEeeeC
Q psy15184        150 KYVTTLLYKPI  160 (160)
Q Consensus       150 KyvT~vlYkp~  160 (160)
                      ||||+|||||+
T Consensus        82 KyVT~VlYkPl   92 (93)
T d2qrdb1          82 KYVTTAMFKNF   92 (93)
T ss_dssp             EEEEEEEEECC
T ss_pred             eeEEEEEeccC
Confidence            99999999996

>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=211.40  Aligned_cols=72  Identities=47%  Similarity=0.741  Sum_probs=44.6

Q ss_pred             CCCCCCCCCcccccccCCCCCC-----CCCCCCCCCCCCeEEeeeEEEeecCCCEEEEEEeeEecceeEEEEEeeeC
Q psy15184         89 KQPGPPILPPHLLQVILNKDTP-----LSCEPTLLPQPNHVMLNHLYALSIKDGVMVLSTTHRYRKKYVTTLLYKPI  160 (160)
Q Consensus        89 k~~~PP~LPphL~~~iLN~~~~-----~~~~~~~Lp~P~Hv~LNHLy~~sik~~~~~l~~T~Ry~~KyvT~vlYkp~  160 (160)
                      .++.||+|||||+++|||+.+.     ..++++.||+|+||+|||||++|||++++|+|+|||||+||||+|||||+
T Consensus        31 ~~~~PP~LPp~L~~tiLN~~~~~~d~~~~~~~~~Lp~PnHVvLNHLyt~sik~~vlalg~T~RY~~KyVT~VlYkPl  107 (107)
T d2qlvb2          31 SWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPI  107 (107)
T ss_dssp             ----CCCCCCC----------------------------CCSCCBCEECCCCSSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cCCCCCCCChHHceeccCCCCcccCccccCCcccCCCCCeEEeeeeeeccccCceEEEEeEEeecceeEEEEEeecC
Confidence            3567999999999999998543     34688999999999999999999999999999999999999999999997

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.66  E-value=3.5e-17  Score=114.30  Aligned_cols=50  Identities=60%  Similarity=1.105  Sum_probs=46.2

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEcccCChhhh
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKKTDFEVF   59 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~~d~e~~   59 (160)
                      +++.||+|.|+|||+|||+|++|++. |        ++.|+.|+.||+|.|.++|.++|
T Consensus        38 ~tl~L~~G~y~YKFiVDG~w~~d~~~-~--------~~~d~~G~~Nnvi~V~~~D~~vf   87 (87)
T d1z0na1          38 AILDLPEGEHQYKFFVDGQWTHDPSE-P--------IVTSQLGTVNNIIQVKKTDFEVF   87 (87)
T ss_dssp             EEEEECSEEEEEEEEETTEEECCTTS-C--------EEECTTSCEEEEEEECSCTTEEC
T ss_pred             EEEECCCceEEEEEEECCEEEeCCCC-C--------eeECCCCCEEEEEEECCCccccC
Confidence            47899999999999999999999999 7        78999999999999999988754

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.59  E-value=4.6e-16  Score=108.02  Aligned_cols=44  Identities=25%  Similarity=0.499  Sum_probs=41.2

Q ss_pred             CEEecCCceEEEEEEECCEEEECCCCccccccccCceeeCCCCCcceEEEccc
Q psy15184          1 MIIDLPEGEHEYKFLVDGEWKVNPQEVKCIAFLVSPVQENKLGSKNNKLAVKK   53 (160)
Q Consensus         1 ~i~~Lp~G~h~ykFiVDG~w~~~~~~~p~~~~~~~p~~~d~~G~~nN~i~v~~   53 (160)
                      +++.||+|.|+|||+|||+|++|++. |        ++.|++|+.||+|+|++
T Consensus        44 ~~l~l~~G~y~YKFiVDG~w~~d~~~-p--------~~~d~~G~~nnvi~V~~   87 (87)
T d2qlvb1          44 VKLRLLPGTHRFRFIVDNELRVSDFL-P--------TATDQMGNFVNYIEVRQ   87 (87)
T ss_dssp             EEEEECSEEEEEEEEETTEEECCTTS-C--------EEBCSSCCCEEEEEECC
T ss_pred             EEEeCCCCCEEEEEEECCcEEcCCCC-C--------eeECCCCCEeEEEEEEC
Confidence            46899999999999999999999999 7        89999999999999974

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.75  E-value=0.0084  Score=40.89  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             EEecCCceEEEEEEECCEEEECCCC
Q psy15184          2 IIDLPEGEHEYKFLVDGEWKVNPQE   26 (160)
Q Consensus         2 i~~Lp~G~h~ykFiVDG~w~~~~~~   26 (160)
                      ++.+.+|.+ |||.|||+|+-||..
T Consensus        57 ~~~~~~G~~-Y~y~vdg~~~~DPya   80 (97)
T d2bhua1          57 ELPVGPGAR-YLFVLDGVPTPDPYA   80 (97)
T ss_dssp             EESCCTTCE-EEEEETTEEECCTTC
T ss_pred             EcCCCCCCE-EEEEECCeEccCCch
Confidence            456778875 999999999988775