Psyllid ID: psy15193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDPDSIAMETDK
Secondary Structure (PSIPRED)
cEEEEcccccccHHHHHHHHHHHHHHHHcccEEccEEEEEEEEHHcccccccccccccccccHHHHcccccccccccccEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccHHHHHHHHHHHHHHHHHcccEEccEEEEEEHHccccccccccHcccccHHHHHHHcccccccccccccEEEEcHHHccccccccccccEEEcccc
Coil and Loop (DISEMBL)
mvyihfpsnhteEEITLQAKYQKLKRkvngthvqgVKLKVSLARRQlkvapindaassttWSAIACHQslkgnhkdkrhqviydddifgeeppledpdsiametdk
Flexible Loop (DISEMBL)
mvyihfpsnhteeeITLQAKYQKLKrkvngthvqgvklkvslaRRQLKVapindaassttWSAIACHQslkgnhkdkrHQVIYDDDifgeeppledpdsiametdk
Low Complexity Region (SEG)
MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDPDSIAMETDK
Disordered region (IsUnstruct)
**************ITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKG*****RHQVIYDDDIF******************
Disordered Region (DISOPRED)
*VYIHF*SNHTEEEITL************GTHVQGVKLKVSLARR***********************************VIYDDDIFGEEPPLEDPD********
Disordered Region (DISEMBL)
MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDP*********
Disordered Region (DISPRO)
MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSA*************KRHQVIYDDDIFGEEPPLEDPDSIAM****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIFGEEPPLEDPDSIAMETDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
P92204	280	Negative elongation facto	yes	N/A	0.584	0.221	0.516	2e-13
Q95ZE9	281	Negative elongation facto	N/A	N/A	0.584	0.220	0.516	8e-13
Q0V898	374	Negative elongation facto	yes	N/A	0.566	0.160	0.461	2e-09
P18615	380	Negative elongation facto	yes	N/A	0.566	0.157	0.446	8e-09
P19426	375	Negative elongation facto	yes	N/A	0.537	0.152	0.451	5e-08

>sp|P92204|NELFE_DROME Negative elongation factor E OS=Drosophila melanogaster GN=Nelf-E PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277

Query: 87  IF 88
             
Sbjct: 278 FL 279

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex, causes transcriptional pausing.
Drosophila melanogaster (taxid: 7227)

>sp|Q95ZE9|NELFE_DROVI Negative elongation factor E OS=Drosophila virilis GN=Nelf-E PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G  V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V Y+DD
Sbjct: 219 EMHGKSVTGIVLQVQLARRQPQIVPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYNDD 278

Query: 87  IF 88
             
Sbjct: 279 FL 280

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex, causes transcriptional pausing.

Drosophila virilis (taxid: 7244)

>sp|Q0V898|NELFE_BOVIN Negative elongation factor E OS=Bos taurus GN=RDBP PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 5/65 (7%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
           ++NGT V+ V+LKVS+AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct: 308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363

Query: 86  DIFGE 90
           D++ E
Sbjct: 364 DVYKE 368

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Bos taurus (taxid: 9913)

>sp|P18615|NELFE_HUMAN Negative elongation factor E OS=Homo sapiens GN=RDBP PE=1 SV=3

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 46/65 (70%), Gaps = 5/65 (7%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
           ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct: 314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369

Query: 86  DIFGE 90
           D++ E
Sbjct: 370 DVYKE 374

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Homo sapiens (taxid: 9606)

>sp|P19426|NELFE_MOUSE Negative elongation factor E OS=Mus musculus GN=Rdbp PE=1 SV=2

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 5/62 (8%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAAS-STTWSAIACHQSLKGNHKDKRHQVIYDD 85
           ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct: 318 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 373

Query: 86  DI 87
           D+
Sbjct: 374 DL 375

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
242025524	273	Negative elongation factor E, putative [	0.584	0.227	0.596	3e-14
321457448	277	hypothetical protein DAPPUDRAFT_301427 [	0.584	0.223	0.564	7e-14
91078286	270	PREDICTED: similar to Negative elongatio	0.556	0.218	0.542	3e-12
157133920	279	hypothetical protein AaeL_AAEL003077 [Ae	0.528	0.200	0.614	3e-12
194865848	280	GG15071 [Drosophila erecta] gi|190653416	0.584	0.221	0.516	6e-12
195326059	280	GM24927 [Drosophila sechellia] gi|194118	0.584	0.221	0.516	6e-12
195491140	280	GE21294 [Drosophila yakuba] gi|194179535	0.584	0.221	0.516	7e-12
24661022	280	negative elongation factor E [Drosophila	0.584	0.221	0.516	7e-12
195125830	281	GI12420 [Drosophila mojavensis] gi|19391	0.584	0.220	0.532	8e-12
225717970	294	Negative elongation factor E [Caligus cl	0.547	0.197	0.586	1e-11

>gi|242025524|ref|XP_002433174.1| Negative elongation factor E, putative [Pediculus humanus corporis] gi|212518715|gb|EEB20436.1| Negative elongation factor E, putative [Pediculus humanus corporis]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G+ V GV+LKVSLARRQ  V  INDA+SS+TWS IA   S KGNHKDKR  ++Y++D
Sbjct: 211 EMDGSMVSGVQLKVSLARRQPVVEAINDASSSSTWSTIAASHSQKGNHKDKRDVIVYEED 270

Query: 87  IF 88
           +F
Sbjct: 271 LF 272

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321457448|gb|EFX68534.1| hypothetical protein DAPPUDRAFT_301427 [Daphnia pulex]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           ++NG+ V G++LKVSLARRQ  + PINDA+SS TWS IA   S KG++KDKR  V Y+++
Sbjct: 216 EMNGSMVSGIQLKVSLARRQPVIEPINDASSSATWSTIAARNSQKGSYKDKRDLVTYEEE 275

Query: 87  IF 88
           +F
Sbjct: 276 LF 277

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078286|ref|XP_971953.1| PREDICTED: similar to Negative elongation factor E CG5994-PA [Tribolium castaneum] gi|270003949|gb|EFA00397.1| hypothetical protein TcasGA2_TC003247 [Tribolium castaneum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 46/59 (77%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDD 85
           +++G+ V G++LKV+LARRQ ++ PINDA+SS  W+ +A   S KGNH+DKR+ V YDD
Sbjct: 209 EMDGSMVSGIQLKVTLARRQPQIEPINDASSSAAWATLASSHSQKGNHRDKRNLVSYDD 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133920|ref|XP_001663073.1| hypothetical protein AaeL_AAEL003077 [Aedes aegypti] gi|108881442|gb|EAT45667.1| AAEL003077-PA [Aedes aegypti]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 33  VQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYD-DDIF 88
           V G++L+V LARRQ ++ PINDA SS+TWSA+A ++S KG HKD R  V YD DDIF
Sbjct: 223 VGGIQLQVQLARRQPQINPINDAGSSSTWSALATYRSQKGKHKDNRELVCYDHDDIF 279

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865848|ref|XP_001971633.1| GG15071 [Drosophila erecta] gi|190653416|gb|EDV50659.1| GG15071 [Drosophila erecta]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277

Query: 87  IF 88
             
Sbjct: 278 FL 279

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326059|ref|XP_002029748.1| GM24927 [Drosophila sechellia] gi|194118691|gb|EDW40734.1| GM24927 [Drosophila sechellia]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277

Query: 87  IF 88
             
Sbjct: 278 FL 279

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491140|ref|XP_002093434.1| GE21294 [Drosophila yakuba] gi|194179535|gb|EDW93146.1| GE21294 [Drosophila yakuba]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277

Query: 87  IF 88
             
Sbjct: 278 FL 279

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24661022|ref|NP_648241.1| negative elongation factor E [Drosophila melanogaster] gi|38372288|sp|P92204.1|NELFE_DROME RecName: Full=Negative elongation factor E gi|1749772|emb|CAA71123.1| ANON-66Da protein [Drosophila melanogaster] gi|1749776|emb|CAA71120.1| ANON-66Da protein [Drosophila melanogaster] gi|7295068|gb|AAF50394.1| negative elongation factor E [Drosophila melanogaster] gi|17945251|gb|AAL48683.1| RE14181p [Drosophila melanogaster] gi|220947970|gb|ACL86528.1| Nelf-E-PA [synthetic construct] gi|220957250|gb|ACL91168.1| Nelf-E-PA [synthetic construct]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YD+D
Sbjct: 218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277

Query: 87  IF 88
             
Sbjct: 278 FL 279

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125830|ref|XP_002007378.1| GI12420 [Drosophila mojavensis] gi|193918987|gb|EDW17854.1| GI12420 [Drosophila mojavensis]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 27  KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
           +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YDDD
Sbjct: 219 EMHGKNVNGIVLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYDDD 278

Query: 87  IF 88
             
Sbjct: 279 FL 280

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225717970|gb|ACO14831.1| Negative elongation factor E [Caligus clemensi]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 31  THVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDDIF 88
           T   G+++KVS ARRQ++V PINDA+SS TWS+IA   S KG   DKR+ VIYD++IF
Sbjct: 237 TTTHGIQIKVSKARRQIQVDPINDASSSATWSSIAASHSQKGAFSDKRNLVIYDEEIF 294

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0017430	280	Nelf-E "Negative elongation fa	0.566	0.214	0.533	1.6e-23
UNIPROTKB|Q95ZE9	281	Nelf-E "Negative elongation fa	0.566	0.213	0.533	1.8e-22
UNIPROTKB|K7GQ47	373	RDBP "Uncharacterized protein"	0.566	0.160	0.461	3.7e-10
UNIPROTKB|Q0V898	374	RDBP "Negative elongation fact	0.566	0.160	0.461	3.7e-10
UNIPROTKB|F1RQW5	378	RDBP "Uncharacterized protein"	0.566	0.158	0.461	3.8e-10
UNIPROTKB|B4DUN1	350	NELFE "cDNA FLJ52247, highly s	0.566	0.171	0.446	6.8e-10
UNIPROTKB|P18615	380	NELFE "Negative elongation fac	0.566	0.157	0.446	8.2e-10
UNIPROTKB|B4DYX9	387	NELFE "cDNA FLJ56180, highly s	0.566	0.155	0.446	8.5e-10
UNIPROTKB|F1LP40	344	Rdbp "Protein Rdbp" [Rattus no	0.537	0.165	0.451	3.8e-09
RGD|1303325	369	Nelfe "negative elongation fac	0.537	0.154	0.451	4.5e-09

FB|FBgn0017430 Nelf-E "Negative elongation factor E" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
             +++G +V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V YD+D
Sbjct:   218 EIHGKNVNGINLQVQLARRQPQIEPINDASSSAVWSSIAASKSQKGSHKDHREMVQYDED 277

GO:0003729 "mRNA binding" evidence=ISS;IDA

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0032021 "NELF complex" evidence=IPI

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q95ZE9 Nelf-E "Negative elongation factor E" [Drosophila virilis (taxid:7244)]

 Score = 167 (63.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASSTTWSAIACHQSLKGNHKDKRHQVIYDDD 86
             +++G  V G+ L+V LARRQ ++ PINDA+SS  WS+IA  +S KG+HKD R  V Y+DD
Sbjct:   219 EMHGKSVTGIVLQVQLARRQPQIVPINDASSSAVWSSIAASKSQKGSHKDLRQMVQYNDD 278

GO:0003723 "RNA binding" evidence=ISS

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

UNIPROTKB|K7GQ47 RDBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKVS+AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   307 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 362

Query:    86 DIFGE 90
             D++ E
Sbjct:   363 DVYKE 367

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q0V898 RDBP "Negative elongation factor E" [Bos taurus (taxid:9913)]

 Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKVS+AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   308 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 363

Query:    86 DIFGE 90
             D++ E
Sbjct:   364 DVYKE 368

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RQW5 RDBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKVS+AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   312 ELNGTQVESVQLKVSIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367

Query:    86 DIFGE 90
             D++ E
Sbjct:   368 DVYKE 372

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B4DUN1 NELFE "cDNA FLJ52247, highly similar to Negative elongation factor E" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 29/65 (44%), Positives = 46/65 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   284 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 339

Query:    86 DIFGE 90
             D++ E
Sbjct:   340 DVYKE 344

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P18615 NELFE "Negative elongation factor E" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 8.2e-10, P = 8.2e-10
 Identities = 29/65 (44%), Positives = 46/65 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   314 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 369

Query:    86 DIFGE 90
             D++ E
Sbjct:   370 DVYKE 374

GO:0000166 "nucleotide binding" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0003723 "RNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0008150 "biological_process" evidence=ND

GO:0032021 "NELF complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|B4DYX9 NELFE "cDNA FLJ56180, highly similar to Negative elongation factor E" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 29/65 (44%), Positives = 46/65 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   321 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 376

Query:    86 DIFGE 90
             D++ E
Sbjct:   377 DVYKE 381

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1LP40 Rdbp "Protein Rdbp" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   287 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 342

Query:    86 DI 87
             D+
Sbjct:   343 DL 344

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

RGD|1303325 Nelfe "negative elongation factor complex member E" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query:    27 KVNGTHVQGVKLKVSLARRQLKVAPINDAASS-TTWSAIACHQSLKGNHKDKRHQVIYDD 85
             ++NGT V+ V+LKV++AR+Q    P+ DAA+  + W ++A   S KG H+DKR Q++Y D
Sbjct:   312 ELNGTQVESVQLKVNIARKQ----PMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSD 367

Query:    86 DI 87
             D+
Sbjct:   368 DL 369

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0032021 "NELF complex" evidence=ISO

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92204	NELFE_DROME	No assigned EC number	0.5161	0.5849	0.2214	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
cd12305	75	cd12305, RRM_NELFE, RNA recognition motif in negat	0.002

>gnl|CDD|240751 cd12305, RRM_NELFE, RNA recognition motif in negative elongation factor E (NELF-E) and similar proteins

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 14/17 (82%), Positives = 16/17 (94%)

Query: 29 NGTHVQGVKLKVSLARR 45
          NGT VQGV+LKVSLAR+
Sbjct: 59 NGTTVQGVQLKVSLARK 75

This subfamily corresponds to the RRM of NELF-E, also termed RNA-binding protein RD. NELF-E is the RNA-binding subunit of cellular negative transcription elongation factor NELF (negative elongation factor) involved in transcriptional regulation of HIV-1 by binding to the stem of the viral transactivation-response element (TAR) RNA which is synthesized by cellular RNA polymerase II at the viral long terminal repeat. NELF is a heterotetrameric protein consisting of NELF A, B, C or the splice variant D, and E. NELF-E contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It plays a role in the control of HIV transcription by binding to TAR RNA. In addition, NELF-E is associated with the NELF-B subunit, probably via a leucine zipper motif. . Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	90.99
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	88.05
PF03780	108	Asp23: Asp23 family; InterPro: IPR005531 This entr	81.68
KOG4207|consensus	256		80.31

>PF13893 RRM_5: RNA recognition motif

Probab=90.99  E-value=0.29  Score=28.74  Aligned_cols=23  Identities=43%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeee
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLA   43 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiA   43 (106)
                      -++|++.|||..+.|-.|+|+.|
T Consensus        34 A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen   34 AQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHHHHTTSEETTEEEEEEEE
T ss_pred             HHHHHHHhCCCEECCcEEEEEEC
Confidence            36789999999999999999986

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=88.05  E-value=0.74  Score=33.12  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -.++|+++|||..+.|..|+|+.|+..|.
T Consensus        88 ~A~~Al~~lng~~i~Gr~l~V~~a~~~~~  116 (144)
T PLN03134         88 AATAAISEMDGKELNGRHIRVNPANDRPS  116 (144)
T ss_pred             HHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence            45778899999999999999999987665

>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family

Probab=81.68  E-value=5.6  Score=26.15  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             eEEeCCCCCCHHHHHHHHHHHHHHHHhcCceeeeeEEEee
Q psy15193          2 VYIHFPSNHTEEEITLQAKYQKLKRKVNGTHVQGVKLKVS   41 (106)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~qklk~emnGt~V~gIqLKVS   41 (106)
                      +-+.|+.|+.+-=..+|.+..+...+|-|-.|..|.+.|.
T Consensus        66 v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~  105 (108)
T PF03780_consen   66 VVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE  105 (108)
T ss_pred             EEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence            4567999999999999999999999999999999988774

These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].

>KOG4207|consensus

Probab=80.31  E-value=2.2  Score=35.29  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAPIND   54 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~ind   54 (106)
                      -++|.+.|+|.+|.|=.|+|+|||=.+..+.+..
T Consensus        68 aedA~damDG~~ldgRelrVq~arygr~~d~~~s  101 (256)
T KOG4207|consen   68 AEDALDAMDGAVLDGRELRVQMARYGRPSDLPHS  101 (256)
T ss_pred             HHHHHHhhcceeeccceeeehhhhcCCCcccccc
Confidence            4688999999999999999999999998776555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	95.58
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	95.36
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	95.16
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	94.86
1x5p_A	97	Negative elongation factor E; structure genomics,	94.86
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	94.36
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	94.04
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	93.93
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	93.81
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	93.65
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	93.62
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	93.57
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	93.52
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	92.61
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	93.51
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	93.48
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	93.41
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	93.34
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	93.24
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	93.23
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	93.17
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	93.05
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	93.05
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	93.05
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	93.04
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	93.02
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	93.02
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	93.0
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	92.99
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	92.94
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	92.91
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	92.83
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	92.71
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	92.66
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	92.61
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	92.58
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	92.55
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	92.42
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	92.39
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	92.38
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	92.35
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	92.22
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	92.21
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	92.18
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	91.98
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	91.93
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	91.89
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	91.88
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	91.76
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	91.71
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	91.67
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	91.67
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	91.64
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	91.62
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	91.58
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	91.56
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	91.54
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	91.53
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	91.47
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	91.42
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	91.27
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	91.21
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	91.16
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	91.15
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	90.87
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	90.87
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	90.86
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	90.84
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	90.72
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	90.68
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	90.62
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	90.55
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	90.49
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	90.39
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	90.39
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	90.31
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	90.24
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	90.2
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	90.1
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	89.94
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	89.88
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	89.5
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	89.25
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	89.25
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	89.18
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	89.1
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	89.07
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	88.96
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	88.69
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	88.46
2div_A	99	TRNA selenocysteine associated protein; structural	88.36
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	88.01
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	87.91
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	87.85
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	87.82
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	87.77
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	87.16
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	87.08
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	87.07
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	87.03
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	87.01
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	86.96
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	86.79
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	86.75
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	86.63
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	86.62
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	86.56
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	86.52
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	86.49
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	86.42
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	86.22
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	86.17
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	85.9
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	85.79
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	85.58
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	85.34
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	85.27
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	85.23
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	85.13
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	85.1
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	85.09
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	84.97
2dis_A	109	Unnamed protein product; structural genomics, RRM	84.85
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	84.58
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	84.41
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	84.29
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	83.93
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	83.93
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	83.6
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	83.51
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	83.43
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	83.39
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	83.21
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	82.48
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	81.52
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	81.39
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	80.89
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	80.62
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	80.35

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=95.58  E-value=0.011  Score=35.43  Aligned_cols=28  Identities=14%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      .-++|++.|||..+.|-.|+|++|+.+|
T Consensus        60 ~A~~A~~~l~g~~~~g~~l~v~~a~~kp   87 (87)
T 3bs9_A           60 DAENAIQQMGGQWLGGRQIRTNWATRKP   87 (87)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred             HHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence            3467899999999999999999999987

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=95.36  E-value=0.011  Score=35.07  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.+++
T Consensus        56 a~~a~~~l~g~~~~g~~l~v~~a~~~~~   83 (83)
T 3md1_A           56 AQNAMDSMQGQDLNGRPLRINWAAKLEH   83 (83)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred             HHHHHHHhcCCeeCCcEEEEEecCcCCC
Confidence            4678899999999999999999998763

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.86  E-value=0.022  Score=35.43  Aligned_cols=28  Identities=18%  Similarity=0.063  Sum_probs=25.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+..|.
T Consensus        65 A~~Ai~~l~g~~~~gr~l~V~~a~~~~~   92 (96)
T 2dgx_A           65 AIGAVNSLHRYKIGSKKILVSLATGASG   92 (96)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred             HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            4688999999999999999999988775

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.86  E-value=0.036  Score=34.34  Aligned_cols=31  Identities=35%  Similarity=0.527  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      .-++|+++|||..+.|-.|+|++|+.++..+
T Consensus        61 ~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~   91 (97)
T 1x5p_A           61 SADQAVAELNGTQVESVQLKVNIARKQPMLD   91 (97)
T ss_dssp             HHHHHHHHTTTEEETTEEEEEECCSSCCCCC
T ss_pred             HHHHHHHHhCCCeECCeEEEEEECCCCCCCC
Confidence            3578899999999999999999999998865

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.36  E-value=0.037  Score=34.04  Aligned_cols=30  Identities=23%  Similarity=0.190  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-.|+|++|+.++...
T Consensus        63 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~   92 (99)
T 1whw_A           63 AVKAYAEVDGQVFQGRMLHVLPSTIKKEAS   92 (99)
T ss_dssp             HHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred             HHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence            467889999999999999999999988754

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=94.04  E-value=0.032  Score=33.15  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|+++|||..+.|-.|+|++||
T Consensus        62 a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A           62 AAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHhCCCEECCcEEEEEEcC
Confidence            467889999999999999999997

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.93  E-value=0.037  Score=35.39  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.+++
T Consensus        82 A~~Ai~~l~g~~~~g~~l~V~~a~~~~l  109 (109)
T 2err_A           82 ADRAREKLHGTVVEGRKIEVNNATARVM  109 (109)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCCSCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEECCCCcC
Confidence            4678999999999999999999998874

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.81  E-value=0.026  Score=34.95  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|+++|||..+.|-.|+|++|+.++
T Consensus        69 a~~A~~~l~g~~~~g~~l~V~~a~~~~   95 (97)
T 2e5j_A           69 AQQAVSCLQGLRLGTDTLRVALARQQR   95 (97)
T ss_dssp             HHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred             HHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence            478899999999999999999999875

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=93.65  E-value=0.039  Score=35.16  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|+++|||..+.|-.|+|++||
T Consensus        74 A~~Ai~~lng~~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           74 AERAINTLNGLRLQSKTIKVSYAR   97 (99)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEee
Confidence            467899999999999999999996

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=93.62  E-value=0.069  Score=32.83  Aligned_cols=31  Identities=16%  Similarity=0.095  Sum_probs=27.5

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAP   51 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~   51 (106)
                      -++|++.|||..+.|-.|+|++|+..+...+
T Consensus        57 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~   87 (96)
T 2x1f_A           57 SASAVRNLNGYQLGSRFLKCGYSSNSDISGV   87 (96)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECSCSSGGGH
T ss_pred             HHHHHHHhCCCeECCeEEEEEEcCCCCCCCc
Confidence            4678999999999999999999999887653

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.57  E-value=0.059  Score=33.97  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      .-++|++.|||..+.|-.|+|++|+.+|...
T Consensus        73 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~  103 (109)
T 1x4g_A           73 SAAHAIVSVNGTTIEGHVVKCYWGKESPDMT  103 (109)
T ss_dssp             HHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred             HHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence            3478899999999999999999999998754

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=93.52  E-value=0.12  Score=31.49  Aligned_cols=31  Identities=16%  Similarity=0.141  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      .-++|+++|||..+.|-.|+|++|....++-
T Consensus        52 ~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~   82 (88)
T 1wg1_A           52 QAQNAIQMFHQYSFRGKDLIVQLQPTDALLC   82 (88)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEEECCCCCCCS
T ss_pred             HHHHHHHHhCCCeECCcEEEEEEcCCCceEe
Confidence            4578899999999999999999999988765

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=92.61  E-value=0.013  Score=37.42  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-.|+|++|+.++.-.
T Consensus        70 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~   99 (116)
T 2lcw_A           70 AKAAIDWFDGKEFSGNPIKVSFATRRADFN   99 (116)
Confidence            467889999999999999999999998754

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.51  E-value=0.048  Score=33.17  Aligned_cols=29  Identities=24%  Similarity=0.433  Sum_probs=25.7

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.|-.|+|++|+.++.
T Consensus        55 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   83 (90)
T 2dnp_A           55 DAKAAIAQLNGKEVKGKRINVELSTKGQK   83 (90)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred             HHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence            34788999999999999999999998765

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.48  E-value=0.058  Score=32.94  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=26.3

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      .-++|++.|||..+.|-.|+|++|+..+.-
T Consensus        56 ~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   85 (92)
T 2dgt_A           56 DAVEAIRGLDNTEFQGKRMHVQLSTSRLRT   85 (92)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred             HHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence            457889999999999999999999887763

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.41  E-value=0.078  Score=32.74  Aligned_cols=28  Identities=25%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.++.
T Consensus        64 A~~A~~~l~g~~~~g~~l~v~~a~~~~~   91 (99)
T 2cpd_A           64 AVEAMKALNGKVLDGSPIEVTLAKPVDK   91 (99)
T ss_dssp             HHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred             HHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            4788999999999999999999998765

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=93.34  E-value=0.047  Score=34.94  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      .-++|+++|||..+.|-.|+|++|+|
T Consensus       141 ~A~~A~~~l~g~~~~g~~i~v~~a~~  166 (166)
T 3md3_A          141 DAQNAMDSMQGQDLNGRPLRINWAAK  166 (166)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred             HHHHHHHHhCCCccCCcEEEEEecCC
Confidence            34688999999999999999999986

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=93.24  E-value=0.062  Score=31.95  Aligned_cols=26  Identities=12%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|+++|||..+.|-.|+|++|+.+
T Consensus        60 a~~A~~~l~g~~~~g~~l~v~~a~~~   85 (88)
T 4a8x_A           60 AEKALKHMDGGQIDGQEITATAVLAP   85 (88)
T ss_dssp             HHHHHHHHTTCEETTEECEEEEECCC
T ss_pred             HHHHHHHcCCCeECCeEEEEEECCCC
Confidence            46788999999999999999999754

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.23  E-value=0.063  Score=33.07  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             HHHHHHHHhcCceee--eeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQ--GVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~--gIqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.  |-.|+|++|+.+|.
T Consensus        65 ~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~   95 (97)
T 1why_A           65 AAQAACAKMRGFPLGGPDRRLRVDFAKSGPS   95 (97)
T ss_dssp             HHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred             HHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence            357899999999999  99999999998774

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=93.17  E-value=0.06  Score=32.82  Aligned_cols=28  Identities=11%  Similarity=0.179  Sum_probs=25.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|+.|+.++.
T Consensus        64 A~~A~~~l~g~~~~g~~l~v~~a~~~~~   91 (97)
T 1nu4_A           64 ATNALRSMQGFPFYDKPMRIQYAKTDSD   91 (97)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred             HHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence            4678899999999999999999998765

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=93.05  E-value=0.059  Score=33.79  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|++.|||..+.|-.|+|++|+.++
T Consensus        81 A~~Ai~~l~g~~~~g~~l~V~~a~~~~  107 (110)
T 1oo0_B           81 ALAAKEALNGAEIMGQTIQVDWCFVKG  107 (110)
T ss_dssp             HHHHHHHHTTCEETTEECEEEESEESS
T ss_pred             HHHHHHHcCCCEECCcEEEEEEcccCC
Confidence            467889999999999999999998776

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.05  E-value=0.066  Score=33.04  Aligned_cols=28  Identities=14%  Similarity=0.221  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|.+|+.++.
T Consensus        71 a~~A~~~l~g~~~~g~~l~v~~a~~~~~   98 (100)
T 2do4_A           71 ASQAVMKMDGMTIKENIIKVAISNSGPS   98 (100)
T ss_dssp             HHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred             HHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            4678999999999999999999987764

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=93.05  E-value=0.08  Score=35.24  Aligned_cols=29  Identities=10%  Similarity=0.113  Sum_probs=23.6

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||+.+.|-.|+|.+|+..|-
T Consensus        79 ~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~  107 (111)
T 2jvr_A           79 ILVEALERLNNIEFRGSVITVERDDNPPP  107 (111)
T ss_dssp             HHHHHHHHTTTEEETTEEEEEEESCC---
T ss_pred             HHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence            35688999999999999999999997764

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.04  E-value=0.09  Score=33.54  Aligned_cols=29  Identities=28%  Similarity=0.251  Sum_probs=26.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.|-.|+|++|+..|.
T Consensus        75 ~A~~Ai~~lng~~~~gr~l~V~~a~~k~~  103 (111)
T 2cpi_A           75 DALRAIQCVNNVVVDGRTLKASLGTTKYC  103 (111)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEecccccc
Confidence            34789999999999999999999999885

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.02  E-value=0.066  Score=33.18  Aligned_cols=30  Identities=27%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-.|+|.+|+.++.-.
T Consensus        68 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~   97 (103)
T 2cq3_A           68 ADRAREKLHGTVVEGRKIEVNNATARVMTN   97 (103)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCSSCCCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcccCCCCC
Confidence            467889999999999999999999988744

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.02  E-value=0.069  Score=33.00  Aligned_cols=29  Identities=10%  Similarity=0.193  Sum_probs=25.8

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.|-.|+|.+|+.++.
T Consensus        65 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   93 (101)
T 2fc9_A           65 DAKEALNSCNKREIEGRAIRLELQGPRGS   93 (101)
T ss_dssp             HHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred             HHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence            34788999999999999999999998865

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.00  E-value=0.066  Score=32.46  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|++.|||..+.|-.|+|++||
T Consensus        71 A~~A~~~l~g~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           71 AQNCTRAINNKQLFGRVIKASIAI   94 (94)
T ss_dssp             HHHHHHHTTTEEETTEEEEEEECC
T ss_pred             HHHHHHHcCCCeeCCcEEEEEecC
Confidence            467889999999999999999997

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=92.99  E-value=0.064  Score=33.71  Aligned_cols=28  Identities=11%  Similarity=0.040  Sum_probs=24.8

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      .-++|+++|||..+.|-.|+|++|+.++
T Consensus        69 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   96 (97)
T 2xnq_A           69 SVRDAIEXESQEMNFGKKLILEVSSSNA   96 (97)
T ss_dssp             HHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred             HHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence            3578899999999999999999998765

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.94  E-value=0.067  Score=33.00  Aligned_cols=28  Identities=14%  Similarity=0.245  Sum_probs=25.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+..+.
T Consensus        67 A~~A~~~l~g~~~~g~~l~V~~a~~~~~   94 (102)
T 2fc8_A           67 AKAAKEAMEDGEIDGNKVTLDWAKPKGE   94 (102)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred             HHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence            4688999999999999999999987665

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=92.91  E-value=0.067  Score=33.22  Aligned_cols=27  Identities=19%  Similarity=0.165  Sum_probs=24.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|++.|||..+.|-.|+|++|+.+|
T Consensus        78 a~~A~~~l~g~~~~g~~l~V~~a~~~~  104 (106)
T 1p27_B           78 AQAAMEGLNGQDLMGQPISVDWCFVRG  104 (106)
T ss_dssp             HHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred             HHHHHHHhcCCEECCcEEEEEeecCCC
Confidence            468899999999999999999999876

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.83  E-value=0.072  Score=32.45  Aligned_cols=28  Identities=11%  Similarity=0.185  Sum_probs=24.9

Q ss_pred             HHHHHHHhcC-ceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNG-THVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnG-t~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++||| ..+.|-.|+|++|+.++.
T Consensus        57 A~~A~~~l~g~~~~~g~~l~v~~a~~~~~   85 (93)
T 2cqh_A           57 AIRAIETLSGKVELHGKIMEVDYSVSKKL   85 (93)
T ss_dssp             HHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred             HHHHHHHccCCeeECCEEEEEEEccCccc
Confidence            4688999999 999999999999987665

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=92.71  E-value=0.066  Score=34.90  Aligned_cols=27  Identities=15%  Similarity=0.146  Sum_probs=23.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|+++|||+.+.|-.|+|.+|++..
T Consensus        61 A~~Ai~~lng~~~~gr~i~V~~a~~~~   87 (110)
T 3s8s_A           61 AKETVKNLHLTSVMGNIIHAQLDIKGQ   87 (110)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred             HHHHHHHhCCCEECCeEEEEEECCCCc
Confidence            468899999999999999999997643

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.66  E-value=0.068  Score=33.66  Aligned_cols=29  Identities=38%  Similarity=0.469  Sum_probs=25.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|++|+..+..
T Consensus        78 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~  106 (113)
T 2cpe_A           78 AKAAVEWFDGKDFQGSKLKVSLARKKPPM  106 (113)
T ss_dssp             HHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred             HHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence            46789999999999999999999988763

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.61  E-value=0.1  Score=31.94  Aligned_cols=28  Identities=14%  Similarity=0.106  Sum_probs=24.6

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      .-++|+++|||..+.|-.|+|.+|+..+
T Consensus        69 ~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   96 (98)
T 2cqp_A           69 EATAAVIDLNDRPIGSRKVKLVLGSGPS   96 (98)
T ss_dssp             HHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred             HHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence            3578899999999999999999998654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.58  E-value=0.099  Score=32.21  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=25.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|++|+.++.-
T Consensus        67 A~~A~~~l~g~~~~g~~l~V~~a~~~~~~   95 (102)
T 2cqb_A           67 AAAAIDNMNESELFGRTIRVNLAKPMRIK   95 (102)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred             HHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence            46788899999999999999999987763

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.55  E-value=0.1  Score=32.30  Aligned_cols=28  Identities=18%  Similarity=0.148  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|.+|+.++.
T Consensus        70 A~~A~~~l~g~~~~g~~l~v~~a~~~~~   97 (103)
T 2cq0_A           70 AARAIAGVSGFGYDHLILNVEWAKPSTN   97 (103)
T ss_dssp             HHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred             HHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence            4678899999999999999999998876

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.42  E-value=0.063  Score=33.29  Aligned_cols=28  Identities=32%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.++.
T Consensus        68 A~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2d9p_A           68 ATKAVTEMNGRIVATKPLYVALAQRKEE   95 (103)
T ss_dssp             HHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred             HHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence            4688899999999999999999998765

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=92.39  E-value=0.12  Score=33.46  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+..+.
T Consensus        61 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   88 (116)
T 2fy1_A           61 AKNAAKDMNGKSLHGKAIKVEQAKKPSF   88 (116)
T ss_dssp             HHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred             HHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            4678899999999999999999998775

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=92.38  E-value=0.086  Score=32.55  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+..+.
T Consensus        50 a~~A~~~l~g~~~~g~~l~V~~a~~~~~   77 (101)
T 2hvz_A           50 AEDAVRGLDGKVICGSRVRVELSTGMPR   77 (101)
T ss_dssp             HHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred             HHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence            4678899999999999999999998874

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=92.35  E-value=0.081  Score=33.52  Aligned_cols=30  Identities=27%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-.|+|++|+.++.-.
T Consensus        80 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~  109 (115)
T 2cpz_A           80 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSK  109 (115)
T ss_dssp             HHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence            467889999999999999999999876633

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.22  E-value=0.067  Score=32.51  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|.+|+.++.-
T Consensus        55 A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   83 (90)
T 2dnq_A           55 AEDAIRNLHHYKLHGVNINVEASKNKSKA   83 (90)
T ss_dssp             HHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred             HHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence            47888999999999999999999988773

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.21  E-value=0.067  Score=33.06  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      .-++|++.|||..+.|-.|+|++|+.++.+.
T Consensus        63 ~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~   93 (99)
T 2cpj_A           63 LAEIAKVELDNMPLRGKQLRVRFACHSASLT   93 (99)
T ss_dssp             HHHHHHHHHTTCCBTTBCCEEEESSCCSCCC
T ss_pred             HHHHHHHHhCCCEeCCceEEEEEcCCCCCCC
Confidence            3577899999999999999999999988755

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=92.18  E-value=0.085  Score=33.30  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|.+|+..+.-
T Consensus        70 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   98 (115)
T 2dgo_A           70 AENAIQQMGGQWLGGRQIRTNWATRKPPA   98 (115)
T ss_dssp             HHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence            46788999999999999999999988764

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.98  E-value=0.12  Score=31.45  Aligned_cols=28  Identities=18%  Similarity=0.125  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.++.
T Consensus        61 A~~A~~~l~g~~~~g~~l~v~~a~~~~~   88 (96)
T 1x5t_A           61 SDAAIEAMNGQYLCNRPITVSYAFKKDS   88 (96)
T ss_dssp             HHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEEecccCC
Confidence            4678899999999999999999998775

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.93  E-value=0.11  Score=31.37  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|+++|||..+.|-.|+|++|+.
T Consensus        70 A~~A~~~l~g~~~~g~~l~v~~a~~   94 (95)
T 2cqc_A           70 AKEAKERANGMELDGRRIRVSGPSS   94 (95)
T ss_dssp             HHHHHHHHTTEEETTEEEEEECCSC
T ss_pred             HHHHHHHhCCCEECCEEEEEEecCC
Confidence            4678899999999999999999974

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=91.89  E-value=0.13  Score=32.09  Aligned_cols=28  Identities=18%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.++.
T Consensus        58 a~~A~~~l~g~~~~g~~l~v~~a~~~~~   85 (103)
T 2dgu_A           58 AVKAMEEMNGKDLEGENIEIVFAKPPDQ   85 (103)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             HHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence            4788999999999999999999988766

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=91.88  E-value=0.19  Score=31.73  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=25.3

Q ss_pred             HHHHHHHHhcCceeee-----eEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQG-----VKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~g-----IqLKVSiARRQP~   48 (106)
                      ..++|+++|||..+.|     -.|+|.+|+..+.
T Consensus        62 ~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~   95 (108)
T 1x4c_A           62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP   95 (108)
T ss_dssp             HHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred             HHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence            4578999999999999     9999999987554

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.76  E-value=0.17  Score=30.65  Aligned_cols=28  Identities=11%  Similarity=0.095  Sum_probs=24.8

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      ..++|++ |||..+.|-.|+|.+|+.+|.
T Consensus        62 ~a~~A~~-~~g~~~~gr~i~v~~a~~~~~   89 (91)
T 2dgw_A           62 EVKQALK-CNREYMGGRYIEVFREKSGPS   89 (91)
T ss_dssp             HHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred             HHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence            3467888 999999999999999999875

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=91.71  E-value=0.13  Score=31.81  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=26.9

Q ss_pred             HHHHHHHh-cCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKV-NGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~em-nGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.| ||..+.|-.|+|++|+.++..+
T Consensus        71 a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~  101 (107)
T 2cph_A           71 AKKAFNALCHSTHLYGRRLVLEWADSEVTVQ  101 (107)
T ss_dssp             HHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred             HHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence            46889999 9999999999999999988755

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=91.67  E-value=0.084  Score=31.85  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||..+.|-.|+|++|+.+..
T Consensus        60 ~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   88 (92)
T 2dgv_A           60 VAERACRMMNGMKLSGREIDVRIDRNASG   88 (92)
T ss_dssp             HHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred             HHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence            34678899999999999999999988654

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.67  E-value=0.14  Score=31.69  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|.+|+.++.
T Consensus        68 a~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2cqi_A           68 AAAALAAMNGRKILGKEVKVNWATTPSS   95 (103)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred             HHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence            4678899999999999999999998765

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=91.64  E-value=0.14  Score=32.84  Aligned_cols=29  Identities=21%  Similarity=0.226  Sum_probs=25.1

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.|-.|+|++|+.++.
T Consensus        77 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (108)
T 2jvo_A           77 SAAKAIEEVHGKSFANQPLEVVYSKLPAK  105 (108)
T ss_dssp             HHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred             HHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence            35788999999999999999999998764

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=91.62  E-value=0.095  Score=32.07  Aligned_cols=29  Identities=34%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|++|+..+.-
T Consensus        63 a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   91 (98)
T 2cpf_A           63 AQKALKQLQGHTVDGHKLEVRISERATKP   91 (98)
T ss_dssp             HHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred             HHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence            46788999999999999999999987763

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=91.58  E-value=0.11  Score=31.73  Aligned_cols=29  Identities=10%  Similarity=0.149  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.|-.|+|.+|+.++.
T Consensus        65 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   93 (96)
T 1fjc_A           65 DAEKNLEEKQGAEIDGRSVSLYYTGEKGG   93 (96)
T ss_dssp             HHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred             HHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence            35788999999999999999999987654

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.56  E-value=0.11  Score=31.43  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+.++.
T Consensus        60 a~~A~~~l~g~~~~g~~l~V~~a~~~~~   87 (95)
T 2dnz_A           60 ARRALEQLNGFELAGRPMRVGHVTERLD   87 (95)
T ss_dssp             HHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred             HHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence            4678899999999999999999998776

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=91.54  E-value=0.077  Score=32.47  Aligned_cols=30  Identities=13%  Similarity=0.091  Sum_probs=21.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.|||..+.|-.|+|+.|+..|...
T Consensus        58 a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~~   87 (90)
T 3p5t_L           58 SKKLMDLLPKRELHGQNPVVTPSNKLEHHH   87 (90)
T ss_dssp             HHHHHHHGGGSCSSSCCCEECCC-------
T ss_pred             HHHHHHHcCCCeeCCEEEEEEECCCCcccc
Confidence            457899999999999999999999877643

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.53  E-value=0.16  Score=31.82  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=25.3

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||..+.|-.|+|++|+..+.
T Consensus        73 ~A~~A~~~l~g~~~~g~~l~V~~a~~~~~  101 (109)
T 1x4a_A           73 DAEDAVYGRDGYDYDGYRLRVEFPRSGRG  101 (109)
T ss_dssp             HHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred             HHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence            34788999999999999999999987664

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.47  E-value=0.078  Score=32.69  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=25.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+..+.
T Consensus        67 A~~A~~~l~g~~~~g~~l~v~~a~~~~~   94 (102)
T 1x5s_A           67 AKDAMMAMNGKSVDGRQIRVDQAGKSSD   94 (102)
T ss_dssp             HHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            4678899999999999999999998775

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.42  E-value=0.087  Score=32.64  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=24.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|.+|+..+.
T Consensus        68 A~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2dnm_A           68 AQDAEAAMDGAELDGRELRVQVARYGRR   95 (103)
T ss_dssp             HHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred             HHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence            4678899999999999999999997654

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.27  E-value=0.051  Score=33.54  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=26.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVAP   51 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld~   51 (106)
                      -++|++.|||..+.|-.|+|++|+.+..-..
T Consensus        63 a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~   93 (104)
T 1p1t_A           63 ALSAMRNLNGREFSGRALRVDNAASEKNKEE   93 (104)
T ss_dssp             HHHHHHHSSSBSCSSSCBEEEETTCTTHHHH
T ss_pred             HHHHHHHhCCCeeCCcEEEEEeCCCccchhh
Confidence            4678899999999999999999998877553

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=91.21  E-value=0.11  Score=32.67  Aligned_cols=28  Identities=18%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|.+|+....
T Consensus        75 A~~A~~~l~g~~~~g~~l~V~~a~~~~~  102 (110)
T 1wf1_A           75 ARAAVLGENGRVLAGQTLDINMAGEPKP  102 (110)
T ss_dssp             HHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred             HHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence            4688999999999999999999986543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=91.16  E-value=0.12  Score=33.84  Aligned_cols=28  Identities=11%  Similarity=0.167  Sum_probs=24.3

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      ..++|+++|||..+.|-.|+|++|+..|
T Consensus       148 ~A~~A~~~l~g~~~~g~~i~v~~a~~k~  175 (175)
T 1fje_B          148 DAEKNLEEKQGAEIDGRSVSLYYTGEKG  175 (175)
T ss_dssp             HHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred             HHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence            3568899999999999999999998654

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=91.15  E-value=0.092  Score=33.28  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++++++|||..+.|-.|+|++||
T Consensus        95 A~~A~~~l~g~~~~g~~l~V~~ak  118 (118)
T 2khc_A           95 AQVAIKAMNGFQVGTKRLKVQLKK  118 (118)
T ss_dssp             HHHHHHHCCCCEETTEECCEEEC-
T ss_pred             HHHHHHHcCCCEECCEEEEEEecC
Confidence            478899999999999999999997

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=90.87  E-value=0.26  Score=31.65  Aligned_cols=30  Identities=17%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.|||..+.|-.|+|++|...+...
T Consensus        89 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~  118 (124)
T 2kt5_A           89 ALKAMKQYKGVPLDGRPMDIQLVASQIDLE  118 (124)
T ss_dssp             HHHHHHHHTTEESSSCEEEEEEECCTTCCC
T ss_pred             HHHHHHHcCCCEECCcEEEEEEeCCCCCCC
Confidence            467899999999999999999999877654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.87  E-value=0.094  Score=35.66  Aligned_cols=22  Identities=14%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             HHHHHhcCceeeeeEEEeeeecc
Q psy15193         23 KLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        23 klk~emnGt~V~gIqLKVSiARR   45 (106)
                      +|+. |||..|+|-.|||++|+.
T Consensus        64 aAi~-mnG~~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           64 NVLS-LNGKELLNRTITIALKSP   85 (91)
T ss_dssp             HGGG-GTTCEETTEEEEEEECCC
T ss_pred             HHHh-cCCeEeCCeEEEEEeCCC
Confidence            4565 999999999999999984

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=90.86  E-value=0.099  Score=32.28  Aligned_cols=26  Identities=12%  Similarity=0.107  Sum_probs=23.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|++.|||..+.|-.|+|+.|+.+
T Consensus        76 A~~Ai~~l~g~~~~g~~l~V~~a~~~  101 (101)
T 2la4_A           76 AAVCIVALANFPFQGRNLRTGWGKER  101 (101)
T ss_dssp             HHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred             HHHHHHHhCCCeECCeEEEEEeccCC
Confidence            46888999999999999999999853

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.84  E-value=0.16  Score=31.86  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=24.6

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||..+.|-.|+|.+|++...
T Consensus        68 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   96 (114)
T 2do0_A           68 EAVQAISMFNGQLLFDRPMHVKMDERALP   96 (114)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred             HHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence            34678899999999999999999986543

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.72  E-value=0.11  Score=32.64  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=25.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|++|+.++.-
T Consensus        80 a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~  108 (115)
T 2cpx_A           80 AWQALHLVNGYKLYGKILVIEFGKNKKQR  108 (115)
T ss_dssp             HHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred             HHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence            46788999999999999999999987763

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=90.68  E-value=0.098  Score=33.55  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=24.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|++.|||..+.|-.|+|++|+.++
T Consensus        81 A~~Ai~~l~g~~i~g~~l~V~~a~~k~  107 (108)
T 2jrs_A           81 AKKALEQLNGFELAGRPMKVGHVTERT  107 (108)
T ss_dssp             HHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred             HHHHHHHcCCCEECCEEEEEEEcccCC
Confidence            467889999999999999999998764

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=90.62  E-value=0.25  Score=32.10  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+..+.
T Consensus        97 a~~A~~~l~g~~~~g~~l~v~~a~~~~~  124 (139)
T 1u6f_A           97 AQQAIAGLNGFNILNKRLKVALAASGHQ  124 (139)
T ss_dssp             HHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred             HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            4678899999999999999999997765

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.55  E-value=0.22  Score=32.02  Aligned_cols=30  Identities=20%  Similarity=0.052  Sum_probs=26.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.|||..+.|-.|+|.+|+...+..
T Consensus        59 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~   88 (111)
T 1whx_A           59 ARKAFRHLAYSKFHHVPLYLEWAPIGVFGA   88 (111)
T ss_dssp             HHHHHHHHTTCBSSSSBCEEEEEETTTTCC
T ss_pred             HHHHHHHhCCCEECCeEEEEEECCCCccCC
Confidence            478899999999999999999999877754

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=90.49  E-value=0.17  Score=31.17  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|++.|||..+.|-.|+|++|+
T Consensus        76 a~~Ai~~l~g~~~~g~~l~V~~A~   99 (99)
T 2la6_A           76 AKAAIDWFDGKEFSGNPIKVSFAT   99 (99)
T ss_dssp             HHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHHhCCCEeCCcEEEEEecC
Confidence            467889999999999999999986

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=90.39  E-value=0.24  Score=31.78  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|+.|+.++.
T Consensus        58 A~~Ai~~l~~~~~~g~~i~V~~a~~~~~   85 (115)
T 4f25_A           58 AERAIEKMNGMLLNDRKVFVGRFKSRKE   85 (115)
T ss_dssp             HHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEECCCccc
Confidence            4678999999999999999999986543

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=90.39  E-value=0.13  Score=32.96  Aligned_cols=28  Identities=18%  Similarity=0.152  Sum_probs=25.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.++.
T Consensus        77 a~~A~~~l~g~~~~g~~l~v~~a~~~~~  104 (126)
T 3ex7_B           77 AQAAMEGLNGQDLMGQPISVDWCFVRGP  104 (126)
T ss_dssp             HHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred             HHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence            4678899999999999999999987776

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=90.31  E-value=0.16  Score=30.69  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|++.|||..+.|-.|+|++|+.
T Consensus        70 a~~A~~~l~g~~~~g~~l~V~~a~~   94 (95)
T 2ywk_A           70 VSYAIALLNGIRLYGRPINVSGPSS   94 (95)
T ss_dssp             HHHHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHHHhCCCEECCCEEEEEEcCC
Confidence            4678999999999999999999973

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.24  E-value=0.18  Score=32.90  Aligned_cols=37  Identities=8%  Similarity=0.030  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcCc--eeeeeEEEeeeeccccccccccccc
Q psy15193         20 KYQKLKRKVNGT--HVQGVKLKVSLARRQLKVAPINDAA   56 (106)
Q Consensus        20 ~~qklk~emnGt--~V~gIqLKVSiARRQP~ld~indA~   56 (106)
                      .-++|++.|||.  .+.|-.|+|++|++++.-.|.|+..
T Consensus        63 ~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~~~~~  101 (104)
T 1wex_A           63 SAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGP  101 (104)
T ss_dssp             HHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCSCC
T ss_pred             HHHHHHHHhccCCceECCEEEEEEEccCccccCCCCCCC
Confidence            346788888765  4999999999999998877777643

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.20  E-value=0.24  Score=33.81  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCcee-----eeeEEEeeeecccccccc
Q psy15193         21 YQKLKRKVNGTHV-----QGVKLKVSLARRQLKVAP   51 (106)
Q Consensus        21 ~qklk~emnGt~V-----~gIqLKVSiARRQP~ld~   51 (106)
                      -++|+++|||+.+     .|..|.|.+|+.-|...|
T Consensus        76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~~~  111 (114)
T 2cq2_A           76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWSGP  111 (114)
T ss_dssp             HHHHHHHTTTCEEECTTSCEEECEEEEESCCCCSSC
T ss_pred             HHHHHHHhCCCEEccccCCCcEEEEEecccCcccCC
Confidence            4688999999999     799999999998887553

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.10  E-value=0.13  Score=30.60  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             HHHHHHHh-cCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKV-NGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~em-nGt~V~gIqLKVSiAR   44 (106)
                      -++|+++| ||..+.|-.|+|+.||
T Consensus        61 A~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           61 AEVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             HHHHHHTTTTTCEETTEECCEEECC
T ss_pred             HHHHHHHhcCCeeECCCEEEEEecC
Confidence            46788889 9999999999999997

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=89.94  E-value=0.11  Score=32.10  Aligned_cols=29  Identities=10%  Similarity=0.046  Sum_probs=25.3

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||..+.|-.|+|.+|+..+.
T Consensus        57 ~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   85 (96)
T 2kvi_A           57 SVRDAIECESQEMNFGKKLILEVSSSNAR   85 (96)
T ss_dssp             HHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred             HHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence            35788999999999999999999987665

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=89.88  E-value=0.21  Score=30.97  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|+++|||..+.|-.|+|++|.
T Consensus        83 a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           83 ALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             HHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHHhCCCEeCCcEEEEEEeC
Confidence            467899999999999999999985

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=89.50  E-value=0.23  Score=32.63  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|++.|||..+.|-.|+|++|+..
T Consensus       105 A~~Ai~~lng~~~~g~~l~V~~a~~~  130 (143)
T 3egn_A          105 AAKALKEANGYVLFGKPMVVQFARSA  130 (143)
T ss_dssp             HHHHHHHHTTBEETTEECEEEECCCS
T ss_pred             HHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            46788999999999999999999764

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=89.25  E-value=0.084  Score=31.83  Aligned_cols=30  Identities=17%  Similarity=0.240  Sum_probs=21.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.|||..+.|-.|+|+.|...+...
T Consensus        55 a~~a~~~l~g~~~~g~~l~V~~a~~~~~~~   84 (90)
T 2ki2_A           55 VSEAIAKLDNTDFMGRTIRVTEANPKKSLE   84 (90)
T ss_dssp             HHHHHHTSCSSCCSSSSCSEEEC-------
T ss_pred             HHHHHHHhCCCEECCeEEEEEEcCCCCCCC
Confidence            357889999999999999999999887644

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.25  E-value=0.19  Score=30.60  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|+++|||..+.|-.|+|++|+..
T Consensus        67 a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           67 ARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             HHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             HHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            46788999999999999999999865

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=89.18  E-value=0.31  Score=32.16  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+.+.-
T Consensus       125 a~~A~~~l~g~~~~g~~l~v~~a~~~~~  152 (158)
T 2kn4_A          125 AEDAMDAMDGAVLDGRELRVQMARYGRP  152 (158)
T ss_dssp             HHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred             HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            4678999999999999999999987643

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=89.10  E-value=0.24  Score=35.31  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCceee-eeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQ-GVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~-gIqLKVSiARR   45 (106)
                      -++|++.|||..+. |-.|+|++|||
T Consensus       257 A~~A~~~l~g~~~~~g~~l~v~~akk  282 (282)
T 3pgw_A          257 AGAARDALQGFKITQNNAMKISFAKK  282 (282)
T ss_pred             HHHHHHHcCCcEeCCCCEEEEEEecC
Confidence            46789999999999 99999999986

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=89.07  E-value=0.32  Score=32.94  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+..|||..+.|-.|+|.+|+.++.
T Consensus       126 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  154 (165)
T 1rk8_A          126 QALAAKEALNGAEIMGQTIQVDWCFVKGP  154 (165)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence            35678999999999999999999998765

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.96  E-value=0.24  Score=30.56  Aligned_cols=30  Identities=13%  Similarity=0.087  Sum_probs=26.1

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      .-++|++.|||..+.|-.|+|++|+..+.-
T Consensus        69 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   98 (105)
T 1x5u_A           69 DADYAIKIMDMIKLYGKPIRVNKASAHNKN   98 (105)
T ss_dssp             HHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred             HHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence            347888999999999999999999987763

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.69  E-value=0.36  Score=29.91  Aligned_cols=28  Identities=11%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      ..++|+ +|||..+.|-.|+|.+|+..+.
T Consensus        69 ~a~~A~-~l~g~~~~g~~l~V~~a~~~~~   96 (104)
T 1wi8_A           69 SLLSAL-SLNEESLGNKRIRVDVADQAQD   96 (104)
T ss_dssp             HHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred             HHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence            356788 9999999999999999998766

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=88.46  E-value=0.29  Score=30.21  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCceeee---eEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQG---VKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~g---IqLKVSiARRQP~   48 (106)
                      .-++|++.|||..+.|   -.|+|.+|+.++.
T Consensus        68 ~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~   99 (105)
T 2dnh_A           68 EAQAAIHALHGSQTMPGASSSLVVKFADTDKE   99 (105)
T ss_dssp             HHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred             HHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence            3568899999999998   9999999988765

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.36  E-value=0.23  Score=30.34  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.2

Q ss_pred             HHHHHHHhcCceeeeeE----EEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVK----LKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIq----LKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.    |+|+.|+.+..
T Consensus        65 a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~   96 (99)
T 2div_A           65 AEKCLHKINGKPLPGATPAKRFKLNYATYSGP   96 (99)
T ss_dssp             HHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred             HHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence            46788999999999999    99999987653

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=88.01  E-value=0.15  Score=34.08  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=25.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.++-
T Consensus       102 A~~Ai~~l~g~~i~g~~l~V~~a~~~~~  129 (135)
T 2lea_A          102 AEDAMDAMDGAVLDGRELRVQMARYGRP  129 (135)
T ss_dssp             HHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            4678899999999999999999998765

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=87.91  E-value=0.43  Score=33.26  Aligned_cols=28  Identities=14%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeee--eEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQG--VKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~g--IqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|  +.|+|.+||..-.
T Consensus        79 A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l  108 (130)
T 3zzy_A           79 AQHAKLSLDGQNIYNACCTLRIDFSKLTSL  108 (130)
T ss_dssp             HHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred             HHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence            468999999999998  9999999997643

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=87.85  E-value=0.18  Score=34.13  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      -++|++.|||..+.|-.|+|++|+.++..
T Consensus        85 A~~Ai~~lng~~l~gr~l~V~~a~~~~~~  113 (127)
T 2a3j_A           85 AQAFVEAFQGYPFQGNPLVITFSETPQSQ  113 (127)
T ss_dssp             HHHHHHHSTTCCCTTSCCEEEECCCCCHH
T ss_pred             HHHHHHHHCCCEeCCCEEEEEEccCcchh
Confidence            46789999999999999999999987653

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=87.82  E-value=0.26  Score=34.33  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=24.5

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||..+.|-.|+|+.|+....
T Consensus       155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~~  183 (213)
T 4f02_A          155 AAERAIEKMNGMLLNDRKVFVGRFKSRKE  183 (213)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence            34688999999999999999999976543

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=87.77  E-value=0.23  Score=32.89  Aligned_cols=27  Identities=19%  Similarity=0.396  Sum_probs=23.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|+..|||..+.|-.|+|++|+.++
T Consensus       123 a~~A~~~l~g~~~~g~~l~v~~a~~~~  149 (150)
T 2i2y_A          123 AADAVRELDGRTLCGCRVRVELSNGEK  149 (150)
T ss_dssp             HHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred             HHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence            467889999999999999999998764

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=87.16  E-value=0.29  Score=32.48  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|+++|||..+.|-.|+|++|+.++
T Consensus       101 A~~Ai~~lng~~i~g~~l~V~~a~~~~  127 (129)
T 2kxn_B          101 AKEAKERANGMELDGRRIRVDFSITKR  127 (129)
T ss_dssp             HHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred             HHHHHHHhCCCEECCEEEEEEEecCCC
Confidence            467899999999999999999998654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=87.08  E-value=0.41  Score=31.72  Aligned_cols=28  Identities=25%  Similarity=0.183  Sum_probs=24.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+..+.
T Consensus       169 a~~A~~~l~g~~~~g~~l~v~~a~~~~~  196 (198)
T 2yh0_A          169 TDQAIAGLNGMQLGDKKLLVQRASVGAK  196 (198)
T ss_dssp             HHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            4678889999999999999999986543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=87.07  E-value=0.43  Score=32.02  Aligned_cols=29  Identities=21%  Similarity=0.072  Sum_probs=25.8

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      ..++|+++|||..+.|-.|+|+.|+..|.
T Consensus       179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~  207 (216)
T 2qfj_A          179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPM  207 (216)
T ss_dssp             HHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred             HHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence            35788999999999999999999998766

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=87.03  E-value=0.28  Score=30.92  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCceeeee-EEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGV-KLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gI-qLKVSiARR   45 (106)
                      -++|++.|||..+.|- .|+|++|+.
T Consensus        74 A~~Ai~~l~g~~~~g~~~l~V~~a~~   99 (105)
T 2nlw_A           74 AVDAVKNADGYKLDKQHTFRVNLFTD   99 (105)
T ss_dssp             HHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred             HHHHHHHhCCcccCCCceEEEEEcch
Confidence            4678999999999998 999999974

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=87.01  E-value=0.27  Score=30.83  Aligned_cols=25  Identities=12%  Similarity=0.196  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCceeee-eEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQG-VKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~g-IqLKVSiARR   45 (106)
                      -++|++.|||..+.| -.|+|++|+.
T Consensus        67 A~~Ai~~lng~~~~g~r~l~V~~a~~   92 (100)
T 3ns6_A           67 AKKIIKSFHGKRLDLKHRLFLYTMKD   92 (100)
T ss_dssp             HHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred             HHHHHHHhCCcccCCCeEEEEEECch
Confidence            467889999999999 9999999964

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=86.96  E-value=0.22  Score=30.68  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=23.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++ |||..+.|-.|+|++|+.++.
T Consensus        71 a~~A~~-l~g~~~~g~~l~V~~a~~~~~   97 (101)
T 1fj7_A           71 LEKALE-LTGLKVFGNEIKLEKPKGRDG   97 (101)
T ss_dssp             HHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred             HHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence            467787 999999999999999987654

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.79  E-value=0.45  Score=29.44  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=24.0

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+ +|||..+.|-.|+|.+|+..+.
T Consensus        68 ~a~~A~-~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2dng_A           68 SLKEAL-TYDGALLGDRSLRVDIAEGRKQ   95 (103)
T ss_dssp             HHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred             HHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence            346777 8999999999999999987765

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.75  E-value=0.35  Score=33.06  Aligned_cols=27  Identities=33%  Similarity=0.426  Sum_probs=23.2

Q ss_pred             HHHHHHHhcCceeee--eEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQG--VKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~g--IqLKVSiARRQP   47 (106)
                      -++|++.|||..+.|  +.|+|+.||..-
T Consensus        75 A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~  103 (124)
T 2e5i_A           75 AQKAKAALNGADIYAGCCTLKIEYARPTR  103 (124)
T ss_dssp             HHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred             HHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence            467889999999987  799999998654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.63  E-value=0.45  Score=31.26  Aligned_cols=31  Identities=23%  Similarity=0.018  Sum_probs=25.6

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKVAP   51 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~ld~   51 (106)
                      ..++|+ +|||..+.|-.|+|..|....++.+
T Consensus        68 ~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~~   98 (109)
T 2dnn_A           68 DTFEAL-KRNRMLMIQRYVEVSPATERQWVAA   98 (109)
T ss_dssp             HHHHHH-HTTTEEETTEEEEEEECCHHHHHHH
T ss_pred             HHHHHH-hcCCCeECCeEEEEEECCccchhhc
Confidence            345677 7999999999999999998877663

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=86.62  E-value=0.34  Score=34.64  Aligned_cols=26  Identities=19%  Similarity=0.275  Sum_probs=23.5

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|+ +|||..+.|-.|+|++|++.|
T Consensus       267 A~~A~-~l~g~~~~g~~i~V~~a~~k~  292 (292)
T 2ghp_A          267 AERAL-QMNRSLLGNREISVSLADKKP  292 (292)
T ss_dssp             HHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred             HHHHH-HhcCCEECCcEEEEEEecCCC
Confidence            46788 999999999999999999876

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.56  E-value=0.88  Score=28.13  Aligned_cols=31  Identities=32%  Similarity=0.334  Sum_probs=26.4

Q ss_pred             HHHHHHHHhc------CceeeeeEEEeeeeccccccc
Q psy15193         20 KYQKLKRKVN------GTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        20 ~~qklk~emn------Gt~V~gIqLKVSiARRQP~ld   50 (106)
                      .-++|++.||      |..+.|-.|+|++|+.++.-.
T Consensus        69 ~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~  105 (111)
T 1x4h_A           69 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA  105 (111)
T ss_dssp             HHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred             HHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence            3478899999      999999999999999876643

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=86.52  E-value=0.59  Score=28.17  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=22.1

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeec
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      .-++|+++|||..+.|-.|+|++|.
T Consensus        69 ~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           69 EATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             HHHHHHHHHTTCEETTEECEEECCC
T ss_pred             HHHHHHHHhCCCeECCcEEEEEecc
Confidence            3567899999999999999999885

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=86.49  E-value=0.43  Score=31.72  Aligned_cols=28  Identities=14%  Similarity=0.187  Sum_probs=24.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+..+.
T Consensus        94 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  121 (156)
T 1h2v_Z           94 AENAMRYINGTRLDDRIIRTDWDAGFKE  121 (156)
T ss_dssp             HHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred             HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence            4678899999999999999999986544

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.42  E-value=0.31  Score=30.72  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=24.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .++|+ +|||..+.|-.|+|++|+..+.
T Consensus        80 a~~A~-~l~g~~~~g~~l~V~~a~~~~~  106 (114)
T 2cq4_A           80 VPLAI-GLTGQRLLGVPIIVQASQAEKN  106 (114)
T ss_dssp             HHHHH-HHTTEEETTEEEEEEEHHHHHH
T ss_pred             HHHHH-HcCCCEeCCeEEEEEecCCCcc
Confidence            46788 9999999999999999988765

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=86.22  E-value=0.51  Score=29.12  Aligned_cols=28  Identities=11%  Similarity=0.102  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCcee---eeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHV---QGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V---~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+   .|-.|+|+.|+.+..
T Consensus        68 A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~   98 (106)
T 2dgp_A           68 ALKAQSALHEQKTLPGMNRPIQVKPADSESR   98 (106)
T ss_dssp             HHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred             HHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence            4688999999998   999999999988765

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=86.17  E-value=0.44  Score=32.86  Aligned_cols=28  Identities=32%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|+.|+++..
T Consensus       112 A~~Ai~~lng~~~~Gr~l~V~~a~~~~~  139 (156)
T 3n9u_C          112 VHKLLELLPGKVLNGEKVDVRPATRQNL  139 (156)
T ss_dssp             HHHHHHHSTTCEETTEECEEEECCHHHH
T ss_pred             HHHHHHHcCCCEECCeEeEEEEcCCCcc
Confidence            4688999999999999999999987654

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=85.90  E-value=0.5  Score=30.26  Aligned_cols=25  Identities=16%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             HHHHHHHhcCc----eeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGT----HVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt----~V~gIqLKVSiARR   45 (106)
                      -++|++.|||+    .++|-.|+|++||.
T Consensus        66 A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           66 ASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             HHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             HHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            36788999998    59999999999984

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=85.79  E-value=0.29  Score=32.90  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             HHHHHHHhcCceee-eeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQ-GVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~-gIqLKVSiARRQ   46 (106)
                      -++|++.|||..+. |-.|+|++|+.+
T Consensus       171 A~~A~~~l~g~~~~~g~~l~v~~a~~~  197 (198)
T 1qm9_A          171 AVQALIDLHNHDLGENHHLRVSFSKST  197 (198)
T ss_dssp             HHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred             HHHHHHHhcCCccCCCCeEEEEeeccc
Confidence            46788999999999 999999999865

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=85.58  E-value=0.56  Score=29.82  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+ +|||..+.|-.|+|++|+..+-
T Consensus        91 a~~A~-~l~g~~~~g~~l~V~~a~~~~~  117 (124)
T 2jwn_A           91 VDAAV-AMDETVFRGRTIKVLPKRTNMP  117 (124)
T ss_dssp             HHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred             HHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence            45677 8999999999999999986543

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=85.34  E-value=0.37  Score=29.99  Aligned_cols=27  Identities=11%  Similarity=0.185  Sum_probs=23.0

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      ..++|+ +|||..+.|-.|+|+.|+..+
T Consensus        73 ~a~~Ai-~l~g~~~~g~~l~V~~a~~~~   99 (100)
T 2j76_E           73 SLLSAL-SLNEESLGNRRIRVDVADQAQ   99 (100)
T ss_dssp             HHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred             HHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence            346778 899999999999999998754

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=85.27  E-value=0.4  Score=28.50  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|+ +|||..+.|-.|+|+.||.
T Consensus        61 a~~a~-~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A           61 VRTSL-ALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             HHHHG-GGTTCEETTEECEEEETTT
T ss_pred             HHHHH-hcCCCEECCcEEEEEEccC
Confidence            35677 8999999999999999985

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.23  E-value=0.24  Score=30.57  Aligned_cols=28  Identities=11%  Similarity=0.178  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCce-eeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTH-VQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~-V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||.. +.|-.|+|++|+..+.
T Consensus        64 a~~A~~~l~g~~~~~g~~l~v~~a~~~~~   92 (104)
T 2dhg_A           64 QKRALTECQGAVGLGSKPVRLSVAIPKAS   92 (104)
T ss_dssp             HHHHHHHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred             HHHHHHHccCCcccCCEeEEEEEccCCCc
Confidence            467889999999 9999999999977654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=85.13  E-value=0.52  Score=33.51  Aligned_cols=28  Identities=14%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+.+..
T Consensus        55 A~~Ai~~lng~~~~g~~l~v~~s~~~~~   82 (205)
T 3tyt_A           55 VDRAITHLNNNFMFGQKMNVCVSKQPAI   82 (205)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred             HHHHHHHhCCCEECCceEEEEEccCCcc
Confidence            4679999999999999999999997654

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=85.10  E-value=0.33  Score=31.23  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             HHHHHHHHhcCceeee--eEEEeeee
Q psy15193         20 KYQKLKRKVNGTHVQG--VKLKVSLA   43 (106)
Q Consensus        20 ~~qklk~emnGt~V~g--IqLKVSiA   43 (106)
                      ..++|+++|||..+.|  ..|+|++|
T Consensus       143 ~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          143 EAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            4578899999999977  99999987

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=85.09  E-value=0.5  Score=29.28  Aligned_cols=29  Identities=10%  Similarity=0.210  Sum_probs=23.2

Q ss_pred             HHHHHHh-cCceeeeeEEEeeeeccccccc
Q psy15193         22 QKLKRKV-NGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        22 qklk~em-nGt~V~gIqLKVSiARRQP~ld   50 (106)
                      ++|++.| ||..+.|-+|+|++|+.+|..+
T Consensus        58 ~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~   87 (91)
T 2lxi_A           58 TRWMEANQHSLNILGQKVSMHYSDPKPKIN   87 (91)
T ss_dssp             HHHHHTTTTEEEETTEEEEEECCCSCCCCS
T ss_pred             HHHHHhcCCCeEECCEEEEEEEcCCCCCCC
Confidence            4566666 5678999999999999888754

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=84.97  E-value=0.55  Score=30.40  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=21.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeee
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLA   43 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiA   43 (106)
                      -++|+++|||..+.|-.|+|+.|
T Consensus       149 A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A          149 TDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             HHHHHHHHTTCEETTEECEEEEC
T ss_pred             HHHHHHHcCCCEECCeEEEEEeC
Confidence            46889999999999999999987

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.85  E-value=0.46  Score=29.44  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             HHHHHHHhc--CceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVN--GTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emn--Gt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.||  +..+.|-.|+|.+|+.++..+
T Consensus        65 A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~~   96 (109)
T 2dis_A           65 AAMARRKLMPGRIQLWGHQIAVDWAEPEIDVD   96 (109)
T ss_dssp             HHHHHTTTTTCCSCBTTBCCEEEESCSSCSTT
T ss_pred             HHHHHHHhhCCCceecCCeEEEEEcCCCCCcC
Confidence            467888996  599999999999999887654

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=84.58  E-value=0.46  Score=29.82  Aligned_cols=28  Identities=14%  Similarity=0.061  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+..|||..+.|-.|+|++|+....
T Consensus        60 A~~A~~~l~g~~~~g~~l~v~~a~~~~~   87 (115)
T 3lqv_A           60 AKNAVDHLSGFNVSNRYLVVLYYNANRA   87 (115)
T ss_dssp             HHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred             HHHHHHHcCCCEECCeEEEEEEecCChh
Confidence            4678899999999999999999986544

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=84.41  E-value=0.63  Score=31.25  Aligned_cols=23  Identities=9%  Similarity=0.053  Sum_probs=21.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeee
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLA   43 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiA   43 (106)
                      -++|++.|||..+.|-.|+|.+|
T Consensus        56 A~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A           56 ANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             HHHHHHHHTTEEETTEEEEEECC
T ss_pred             HHHHHHHhcCCEECCcEEEEEEC
Confidence            46889999999999999999999

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=84.29  E-value=0.46  Score=33.39  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             HHHHHHHhcCceee-eeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQ-GVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~-gIqLKVSiARRQ   46 (106)
                      -++|+++|||..+. |-.|+|++|+.+
T Consensus       202 A~~Ai~~l~g~~~~~g~~l~v~~a~~~  228 (229)
T 2adc_A          202 AVQALIDLHNHDLGENHHLRVSFSKST  228 (229)
T ss_dssp             HHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred             HHHHHHHHCCCccCCCCeEEEEEecCC
Confidence            46788999999999 999999999865

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.93  E-value=0.76  Score=28.07  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=24.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++ |||..+.|-.|+|++|+.++.-.
T Consensus        65 a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~   93 (99)
T 2dgs_A           65 VDQAVN-MHFHDIMGKKVEVKRAEPRDSKS   93 (99)
T ss_dssp             HHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred             HHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence            456776 99999999999999999877633

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=83.93  E-value=0.66  Score=29.64  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeee
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLA   43 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiA   43 (106)
                      .-++|++.|||..+.|-.|+|++|
T Consensus       117 ~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A          117 DAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             HHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             HHHHHHHHhCCCEECCEEEEEEeC
Confidence            357889999999999999999987

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.60  E-value=0.66  Score=29.57  Aligned_cols=28  Identities=7%  Similarity=0.070  Sum_probs=23.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|++|+..+.
T Consensus        77 A~~Ai~~lng~~~~gr~l~v~~a~~~~~  104 (112)
T 2dit_A           77 ADYCIQTLDGRWFGGRQITAQAWDGTTD  104 (112)
T ss_dssp             HHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred             HHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence            4678999999999999999999976543

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=83.51  E-value=0.59  Score=29.74  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             HHHHHHHhcCceeee--eEEEeeee
Q psy15193         21 YQKLKRKVNGTHVQG--VKLKVSLA   43 (106)
Q Consensus        21 ~qklk~emnGt~V~g--IqLKVSiA   43 (106)
                      -++|+++|||..+.|  +.|+|+.|
T Consensus       143 A~~A~~~l~g~~~~g~~~~i~v~~A  167 (167)
T 1fxl_A          143 AEEAIKGLNGQKPSGATEPITVKFA  167 (167)
T ss_dssp             HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHHhcCCccCCCccceEEEeC
Confidence            567899999999999  67888876

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.43  E-value=0.64  Score=31.84  Aligned_cols=29  Identities=14%  Similarity=0.391  Sum_probs=26.2

Q ss_pred             HHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         22 QKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        22 qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      +.|+++|||..+-|=.++|++|+..+-+-
T Consensus        60 ~~A~~~l~G~~l~gr~i~v~~A~~~sd~~   88 (96)
T 2diu_A           60 ERAQKRMENEDVFGNRIIVSFTPKNRELC   88 (96)
T ss_dssp             HHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred             HHHHHHhcCCccCCceEEEEecCCCccee
Confidence            58999999999999999999999888644

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=83.39  E-value=0.71  Score=30.02  Aligned_cols=28  Identities=18%  Similarity=0.063  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||....|-.|+|++|+..-+
T Consensus        69 A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f   96 (105)
T 2pe8_A           69 AIKAVVDLNGRYFGGRVVKACFYNLDKF   96 (105)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCHHHH
T ss_pred             HHHHHHHHCCCEECCcEEEEEEcCHHHh
Confidence            4689999999999999999999976443

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=83.21  E-value=0.27  Score=35.83  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      .++|+++|||+.+.|-.|+|++|+++-
T Consensus       125 a~~Ai~~lng~~~~Gr~l~V~~a~~~~  151 (229)
T 3q2s_C          125 SKKLMDLLPKRELHGQNPVVTPVNKQF  151 (229)
T ss_dssp             HHHHHTTSTTSCBTTBCCEEEECCHHH
T ss_pred             HHHHHHHcCCCeECCEEeEEEECCCCc
Confidence            467899999999999999999998764

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=82.48  E-value=0.84  Score=32.46  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|+..+.
T Consensus       239 A~~A~~~l~g~~~~g~~l~v~~a~~~~~  266 (284)
T 3smz_A          239 AEEAQQQADGLSLGGSHLRVSFCAPGPP  266 (284)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred             HHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence            4678999999999999999999987664

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=81.52  E-value=0.86  Score=29.90  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=24.2

Q ss_pred             HHHHHHHhcCc--eeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGT--HVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt--~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|++.|||.  .+.|-.|+|++|++.+.+.
T Consensus        65 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~   96 (102)
T 1x4d_A           65 AQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK   96 (102)
T ss_dssp             HHHHHHHHHHSCCEETTEECEEEEECCCTTSS
T ss_pred             HHHHHHHHcCCCceECCcEEEEEECCCCCCCC
Confidence            46788888865  5999999999999776654

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=81.39  E-value=1.7  Score=34.81  Aligned_cols=28  Identities=14%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .++|+..|||..+.|-.|+|.+|+..+.
T Consensus       157 A~~Ai~~lng~~i~gr~i~V~~a~~~~~  184 (437)
T 3pgw_S          157 MHSAYKHADGKKIDGRRVLVDVERGRTV  184 (437)
T ss_pred             HHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            4678889999999999999999986654

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=80.89  E-value=0.69  Score=33.60  Aligned_cols=28  Identities=14%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCceeee--eEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQG--VKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~g--IqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|  ..|+|++||....
T Consensus        97 A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l  126 (164)
T 1sjr_A           97 AQHAKLSLDGQNIYNACCTLRIDFSKLTSL  126 (164)
T ss_dssp             HHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred             HHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence            467899999999965  9999999997643

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=80.62  E-value=1.2  Score=31.67  Aligned_cols=28  Identities=11%  Similarity=0.179  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|..|+|..|+..+.
T Consensus        65 a~~A~~~l~g~~~~g~~l~v~~a~~~~~   92 (282)
T 3pgw_A           65 ATNALRSMQGFPFYDKPMRIQYAKTDSD   92 (282)
T ss_pred             HHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence            3678899999999999999999988764

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=80.35  E-value=1.2  Score=28.29  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|+.|+..+.
T Consensus        57 A~~a~~~l~~~~~~g~~l~v~~~~~~~~   84 (167)
T 1fxl_A           57 AEKAINTLNGLRLQTKTIKVSYARPSSA   84 (167)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred             HHHHHHHcCCCccCCceEEEEecCCCcc
Confidence            4678889999999999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	97.4
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	95.91
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	95.89
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	95.27
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	94.7
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.09
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	93.96
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	93.95
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	93.42
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	93.38
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	93.25
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	93.07
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	92.83
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	92.78
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	92.72
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	92.68
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	92.54
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	92.31
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	92.18
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	92.08
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	92.05
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	91.92
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	91.56
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	90.78
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	90.73
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	90.71
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	90.28
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	90.2
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	90.15
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	90.0
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	89.75
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	89.58
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	89.23
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	88.97
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	88.64
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	88.57
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	88.08
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	87.95
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	87.9
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	87.78
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	87.45
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	86.41
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	85.93
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	85.74
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	85.45
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	85.28
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	84.13
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	83.93
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	83.51
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	83.43

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.5e-05  Score=46.14  Aligned_cols=28  Identities=39%  Similarity=0.564  Sum_probs=26.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++||++|+
T Consensus        52 A~~Ai~~lng~~~~g~~l~V~~a~~~P~   79 (79)
T d2bz2a1          52 ADQAVAELNGTQVESVQLKVNIARKQPM   79 (79)
T ss_dssp             HHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence            4688999999999999999999999996

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0021  Score=40.04  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=25.8

Q ss_pred             HHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         22 QKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        22 qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      ++|+.+|||+.+.|-.|||+.||+.|-+
T Consensus        68 ~~Ai~~l~~~~i~g~~l~v~~ak~~p~~   95 (96)
T d1x4ga1          68 AHAIVSVNGTTIEGHVVKCYWGKESPDM   95 (96)
T ss_dssp             HHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred             HHHHHHhCCCEECCEEEEEEEcCCCCCC
Confidence            6788999999999999999999999864

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0025  Score=38.03  Aligned_cols=30  Identities=10%  Similarity=0.131  Sum_probs=26.8

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      .-++|+.+|||..+.|-.|+|++|+..+++
T Consensus        45 ~A~~Ai~~ln~~~~~g~~l~V~~a~~d~~l   74 (75)
T d1wi6a1          45 QAEAAINTFHQSRLRERELSVQLQPTDALL   74 (75)
T ss_dssp             HHHHHHHHHTTEESSSCEEEEEECCSTTCC
T ss_pred             HHHHHHHHhCCccCCCCEEEEEEeCCCCcc
Confidence            457899999999999999999999988764

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0047  Score=37.52  Aligned_cols=28  Identities=39%  Similarity=0.467  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||.++.|-+|+|++||.+|-
T Consensus        71 a~~Ai~~l~g~~~~gr~i~V~~a~~~~p   98 (101)
T d2cpea1          71 AKAAVEWFDGKDFQGSKLKVSLARKKPP   98 (101)
T ss_dssp             HHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcCCCCC
Confidence            3578999999999999999999998764

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.015  Score=35.35  Aligned_cols=30  Identities=17%  Similarity=0.129  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-+|+|++|+....+.
T Consensus        53 A~~Ai~~ln~~~~~G~~l~V~~a~~~~~~~   82 (88)
T d1wg1a_          53 AQNAIQMFHQYSFRGKDLIVQLQPTDALLC   82 (88)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCCCCCCS
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcCCCCCCC
Confidence            468999999999999999999998776644

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.09  E-value=0.014  Score=34.27  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             HHHHHHhcCceeeeeEEEeeeec
Q psy15193         22 QKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        22 qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      ++|+++|||+.+.|-+|+|++|+
T Consensus        57 ~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1          57 RYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             HHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHhCCCEECCEEEEEEEcc
Confidence            67889999999999999999995

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.96  E-value=0.019  Score=34.01  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhcCceeeeeEEEeeee
Q psy15193         19 AKYQKLKRKVNGTHVQGVKLKVSLA   43 (106)
Q Consensus        19 ~~~qklk~emnGt~V~gIqLKVSiA   43 (106)
                      +..++|+++|||..+.|-.|+|+||
T Consensus        62 e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          62 DEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEES
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEC
Confidence            3467899999999999999999997

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=0.012  Score=37.27  Aligned_cols=30  Identities=13%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-.|+|++||.++.-+
T Consensus        59 A~~Ai~~lng~~~~g~~l~v~~a~~~~~~~   88 (104)
T d1weya_          59 AADARLRLHKTEFLGKEMKLYFAQTLHIGS   88 (104)
T ss_dssp             HHHHHHTSTTSEETTEECEEECCCCSSCCS
T ss_pred             HHHHHHHhcccccCCCEeEEeecccCCCCC
Confidence            368999999999999999999999887733

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.02  Score=34.88  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=22.5

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|+++|||+.+.|-+|+|++||.
T Consensus        66 a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          66 AEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             HHHHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEeccC
Confidence            3568999999999999999999984

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.019  Score=33.97  Aligned_cols=28  Identities=36%  Similarity=0.528  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|.+|++.+.
T Consensus        56 A~~A~~~~~~~~~~g~~i~V~~a~~~~k   83 (85)
T d2cpfa1          56 AQKALKQLQGHTVDGHKLEVRISERATK   83 (85)
T ss_dssp             HHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred             HHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            3578899999999999999999987653

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.03  Score=33.54  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             HHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         22 QKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        22 qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      ++|. +|||..+.|-.|+|++|...|
T Consensus        62 ~~Al-~~n~~~~~gr~l~V~~a~~kP   86 (86)
T d2ghpa3          62 ERAL-QMNRSLLGNREISVSLADKKP   86 (86)
T ss_dssp             HHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred             HHHH-hcCCCEECCEEEEEEEcCCCC
Confidence            4566 499999999999999999887

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.07  E-value=0.027  Score=32.95  Aligned_cols=24  Identities=42%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|++.|||..+.|-.|+|+.||
T Consensus        57 A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          57 SQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcC
Confidence            367899999999999999999996

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.033  Score=34.54  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      --++|+++|||+.+.|-.|+|.+|+.+..
T Consensus        62 ~A~~Ai~~lng~~~~g~~l~V~~a~~~~~   90 (98)
T d1wf2a_          62 NARAAVAGEDGRMIAGQVLDINLAAEPKV   90 (98)
T ss_dssp             HHHHHHHTTTTCEETTEECEEEETTSCCC
T ss_pred             HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            34789999999999999999999986543

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.033  Score=33.02  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|+.+|||..+.|-.|+|++||
T Consensus        57 A~~Ai~~l~~~~i~g~~i~V~~ak   80 (86)
T d2cpda1          57 AVEAMKALNGKVLDGSPIEVTLAK   80 (86)
T ss_dssp             HHHHHHHHSSEEETTEEEEEECCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEecc
Confidence            467899999999999999999997

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.046  Score=31.78  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      -++|+++|||..+.|-.|+|++||
T Consensus        57 a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1          57 AEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEee
Confidence            467899999999999999999996

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.031  Score=34.60  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|+.+|||..+.|-.|+|++||..
T Consensus        73 A~~Ai~~lng~~~~g~~i~V~~a~~k   98 (102)
T d2cpza1          73 AQAAIQSMNGFQIGMKRLKVQLKRSK   98 (102)
T ss_dssp             HHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             HHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            46788999999999999999999864

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.039  Score=33.48  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|+.|+..+.
T Consensus        64 a~~Ai~~l~~~~~~g~~l~V~~A~~r~~   91 (93)
T d2cq3a1          64 ADRAREKLHGTVVEGRKIEVNNATARVM   91 (93)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEecCcCCC
Confidence            3678999999999999999999997764

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.31  E-value=0.057  Score=31.70  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeec
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      .-++|+++|||..+.|-.|+|++|.
T Consensus        53 ~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          53 DALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEee
Confidence            3467899999999999999999985

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.18  E-value=0.034  Score=33.96  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.5

Q ss_pred             HHHHHHHHhcCceeee--eEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQG--VKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~g--IqLKVSiARRQP~   48 (106)
                      --++|+++|||..+.|  .+|+|++||..|.
T Consensus        65 ~A~~A~~~l~~~~i~g~~~~l~v~~ak~~~~   95 (97)
T d1whya_          65 AAQAACAKMRGFPLGGPDRRLRVDFAKSGPS   95 (97)
T ss_dssp             HHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred             HHHHHHHHhCCCEeCCCceEEEEEeCCCCCC
Confidence            3468899999999976  6899999998775

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.033  Score=33.58  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=24.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|+++|||..+.|-.|+|++|.....
T Consensus        57 A~~A~~~l~g~~i~g~~l~V~~A~~~~~   84 (86)
T d2cpja1          57 AEIAKVELDNMPLRGKQLRVRFACHSAS   84 (86)
T ss_dssp             HHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred             HHHHHHHhCCCEECCEEEEEEECCCcCC
Confidence            4578999999999999999999987654

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.05  E-value=0.04  Score=34.12  Aligned_cols=29  Identities=17%  Similarity=0.129  Sum_probs=25.7

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||+.+.|-.|+|+.+|-+|-
T Consensus        62 ~a~~Ai~~lng~~~~g~~i~v~~~~~~~~   90 (98)
T d1wg4a_          62 DMEYALRKLDDTKFRSHEGETSYIRVYPE   90 (98)
T ss_dssp             HHHHHHHHHSSEEEECTTSCEEEEEEECC
T ss_pred             HHHHHHHHhCCCEeCCeEEEEEEEecCCC
Confidence            45679999999999999999999998774

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.06  Score=32.28  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=23.6

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|++.|||..+.|-.|+|+.|+..+
T Consensus        61 A~~A~~~l~~~~~~g~~i~v~~a~~~~   87 (90)
T d2cqia1          61 AAAALAAMNGRKILGKEVKVNWATTPS   87 (90)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred             HHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            357889999999999999999998654

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.024  Score=34.08  Aligned_cols=27  Identities=19%  Similarity=0.193  Sum_probs=23.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|+++|||..+.|-.|+|+.|+.++
T Consensus        61 A~~Ai~~l~g~~~~g~~i~V~~a~~~~   87 (89)
T d1cvja2          61 AERAIEKMNGMLLNDRKVFVGRFKSRK   87 (89)
T ss_dssp             HHHHTTSSSEEEETTEEEEEEECCCTT
T ss_pred             HHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            468889999999999999999998654

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.075  Score=31.89  Aligned_cols=27  Identities=11%  Similarity=0.180  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      .++|+++|||..+.|-.|+|++|+..+
T Consensus        59 A~~A~~~~~~~~~~g~~l~v~~ak~~~   85 (91)
T d1nu4a_          59 ATNALRSMQGFPFYDKPMRIQYAKTDS   85 (91)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEeCCCc
Confidence            468999999999999999999998765

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.73  E-value=0.15  Score=30.88  Aligned_cols=29  Identities=24%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      ..++|+++|||..+.|-.|+|+.|+..+.
T Consensus        62 ~a~~A~~~l~g~~~~gr~i~V~~a~~~~~   90 (99)
T d1whwa_          62 HAVKAYAEVDGQVFQGRMLHVLPSTIKKE   90 (99)
T ss_dssp             HHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred             HHHHHHHHcCCCEECCEEEEEEECCCCCc
Confidence            34678899999999999999999998764

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.064  Score=32.16  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=22.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeec
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLAR   44 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiAR   44 (106)
                      .++|+++|||..+.|-.|+|+.||
T Consensus        63 A~~Ai~~l~g~~~~g~~i~v~~ak   86 (90)
T d2cq0a1          63 AARAIAGVSGFGYDHLILNVEWAK   86 (90)
T ss_dssp             HHHHHHHTTTCEETTEECEEEESS
T ss_pred             HHHHHHHhCCCEECCEEEEEEeee
Confidence            467899999999999999999997

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.065  Score=31.80  Aligned_cols=26  Identities=12%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             HHHHHHHhcCcee-eeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHV-QGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V-~gIqLKVSiARRQ   46 (106)
                      -++|+.+|||..+ +|-.|+|++||.+
T Consensus        61 A~~A~~~l~~~~i~~g~~l~v~~sk~~   87 (88)
T d2adca2          61 AVQALIDLHNHDLGENHHLRVSFSKST   87 (88)
T ss_dssp             HHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred             HHHHHHhccCCEecCCCEEEEEeCCCC
Confidence            3577899999998 5899999999864

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.13  Score=31.07  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=22.6

Q ss_pred             HHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         22 QKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        22 qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      ++|+..|||..+.|-+|+|++|+.+
T Consensus        54 ~~ai~~lng~~l~g~~l~v~~s~~~   78 (109)
T d2adca1          54 QLAMSHLNGHKLHGKPIRITLSKHQ   78 (109)
T ss_dssp             HHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             HHHHHHhCCCEECCEEEEEEECCCC
Confidence            5888999999999999999999744

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=0.06  Score=32.46  Aligned_cols=26  Identities=19%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|+++|||..+.|-.|+|+.|+..
T Consensus        73 A~~Ai~~l~g~~~~g~~l~V~~ak~k   98 (102)
T d2cpxa1          73 AWQALHLVNGYKLYGKILVIEFGKNK   98 (102)
T ss_dssp             HHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEeCCCc
Confidence            35688999999999999999999863

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.032  Score=33.48  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||+...|-.|+|.+||.++-
T Consensus        47 ~a~~Ai~~l~g~~~~g~~i~v~~~~~~~~   75 (87)
T d3begb1          47 DMTYAVRKLDNTKFRSHEGETAYIRVKVD   75 (87)
T ss_dssp             HHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred             HHHHHHHHhCCCEECCcEeEEeEEecCcC
Confidence            35788999999999999999999987654

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.088  Score=30.88  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      .++|+++|||..+.|=.|+|+.|+|
T Consensus        55 a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1          55 AERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             HHHHHTTSTTCEETTEECEEEECCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEEeCC
Confidence            4678999999999999999999986

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.58  E-value=0.12  Score=31.30  Aligned_cols=30  Identities=17%  Similarity=0.039  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLKV   49 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~l   49 (106)
                      .-++|+.+|||+.+.|-.|+|+.|+.++.-
T Consensus        58 ~A~~A~~~lng~~~~gr~l~v~~a~~~~~~   87 (111)
T d1whxa_          58 EARKAFRHLAYSKFHHVPLYLEWAPIGVFG   87 (111)
T ss_dssp             HHHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred             HHHHHHHHHcCCccCCCeEEEEECCCCccc
Confidence            457899999999999999999999988754

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.13  Score=29.92  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=23.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      .++|+++|||..+.|-.|+|+.|...
T Consensus        54 a~~Ai~~~~g~~~~gr~l~v~~a~~k   79 (83)
T d1x5ta1          54 SDAAIEAMNGQYLCNRPITVSYAFKK   79 (83)
T ss_dssp             HHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             HHHHHHhCCCcEECCEEEEEEEecCC
Confidence            46788999999999999999999754

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.11  Score=31.38  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=22.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|+++|||..+.|-.|+|++|+.
T Consensus        62 A~~Ai~~l~g~~~~gr~i~V~~a~~   86 (93)
T d1h2vz_          62 AENAMRYINGTRLDDRIIRTDWDAG   86 (93)
T ss_dssp             HHHHHHHTTTSEETTEECEEEEESC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcCC
Confidence            4678999999999999999999963

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.073  Score=32.49  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=24.9

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLKVA   50 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~ld   50 (106)
                      -++|+++|||..+.|-.|+|+.|..+..-+
T Consensus        63 a~~ai~~l~~~~~~g~~i~V~~a~~~~~~~   92 (104)
T d1p1ta_          63 ALSAMRNLNGREFSGRALRVDNAASEKNKE   92 (104)
T ss_dssp             HHHHHHHSSSBSCSSSCBEEEETTCTTHHH
T ss_pred             HHHHHHHcCCCEECCEEEEEEECCCCCCcc
Confidence            457889999999999999999997665444

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.087  Score=31.22  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             HHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         22 QKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        22 qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      ++|+++|||..+.|-.|+|+.|.+..
T Consensus        61 ~~Ai~~l~~~~~~g~~l~V~~a~~~~   86 (90)
T d1x5sa1          61 KDAMMAMNGKSVDGRQIRVDQAGKSS   86 (90)
T ss_dssp             HHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             HHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            57888999999999999999997643

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.26  Score=29.28  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=22.4

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|+..|||..+.|-.|+|+.|+.
T Consensus        60 A~~ai~~l~~~~i~g~~l~v~~a~p   84 (89)
T d2cqba1          60 AAAAIDNMNESELFGRTIRVNLAKP   84 (89)
T ss_dssp             HHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEEeCC
Confidence            4678899999999999999999973

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.14  Score=30.91  Aligned_cols=27  Identities=11%  Similarity=0.078  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -++|++.|||..+.|-.|+|+.|+...
T Consensus        64 A~~Ai~~l~g~~~~g~~l~V~~A~~~~   90 (93)
T d1x5ua1          64 ADYAIKIMDMIKLYGKPIRVNKASAHN   90 (93)
T ss_dssp             HHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred             HHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            468899999999999999999998654

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=87.90  E-value=0.2  Score=30.20  Aligned_cols=29  Identities=10%  Similarity=0.149  Sum_probs=24.7

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      .-++|+++|||..+.|-.|+|.+|..+..
T Consensus        65 ~A~~A~~~l~~~~~~gr~i~V~~a~~k~~   93 (96)
T d1fjca_          65 DAEKNLEEKQGAEIDGRSVSLYYTGEKGG   93 (96)
T ss_dssp             HHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred             HHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence            34678999999999999999999987643

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.78  E-value=0.15  Score=30.37  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      -++|++.|||+.+.|-.|+|+.|.-
T Consensus        62 A~~A~~~lng~~l~g~~l~V~~a~~   86 (88)
T d1rk8a_          62 ALAAKEALNGAEIMGQTIQVDWCFV   86 (88)
T ss_dssp             HHHHHHHHTTCEETTEECEEEESEE
T ss_pred             HHHHHHHcCCCEECCEEEEEEEecC
Confidence            4678899999999999999999863

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.45  E-value=0.12  Score=30.49  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=20.9

Q ss_pred             HHHHHHHhcCceee-eeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQ-GVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~-gIqLKVSiARR   45 (106)
                      -++|+..|||..+. |-.|+|+.||+
T Consensus        58 A~~A~~~l~g~~~~~~~~i~v~~akk   83 (83)
T d2b0ga1          58 SNAAKEALQGFKITPTHAMKITFAKK   83 (83)
T ss_dssp             HHHHHHHHTTCBSSTTCBCEEEECCC
T ss_pred             HHHHHHHhCCcEeCCCcEEEEEEecC
Confidence            45778899999984 68899999985

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=0.19  Score=29.49  Aligned_cols=26  Identities=12%  Similarity=0.190  Sum_probs=22.2

Q ss_pred             HHHHHHHHhcCc-eeeeeEEEeeeecc
Q psy15193         20 KYQKLKRKVNGT-HVQGVKLKVSLARR   45 (106)
Q Consensus        20 ~~qklk~emnGt-~V~gIqLKVSiARR   45 (106)
                      --++|+++|||+ .+.|-.|+|+.|+.
T Consensus        49 ~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1          49 WAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            346789999997 59999999999874

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.93  E-value=0.21  Score=30.19  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             HHHHHHHh-cCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKV-NGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~em-nGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.| ||..+.|-+|+|++|..+..
T Consensus        64 A~~Ai~~l~~~~~~~Gr~l~V~~A~~~~~   92 (94)
T d2cpha1          64 AKKAFNALCHSTHLYGRRLVLEWADSEVT   92 (94)
T ss_dssp             HHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred             HHHHHHHccCCcEECCEEEEEEEcCCCCC
Confidence            36788888 89999999999999988754

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=85.74  E-value=0.28  Score=29.55  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeecc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARR   45 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARR   45 (106)
                      .++|. +|||..+.|-.|+|..|+.
T Consensus        67 a~~Al-~~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          67 LEKAL-ELTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             HHHHH-HGGGEEETTEEEEEECCCC
T ss_pred             HHHHH-hcCCcEECCEEEEEEecCC
Confidence            46787 5999999999999999984

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=0.21  Score=29.55  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             HHHHHHHHhcCceeee--eEEEeeee
Q psy15193         20 KYQKLKRKVNGTHVQG--VKLKVSLA   43 (106)
Q Consensus        20 ~~qklk~emnGt~V~g--IqLKVSiA   43 (106)
                      .-++|+++|||..+.|  ..|+|++|
T Consensus        60 ~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2          60 EAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            3468899999999987  66999887

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.28  E-value=0.39  Score=30.33  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQ   46 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQ   46 (106)
                      -++|++.|||..+.|=.|+|.+|+..
T Consensus        97 A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          97 AQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             HHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            46788999999999999999999743

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.2  Score=30.83  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=23.6

Q ss_pred             HHHHHHHhcCcee--eeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHV--QGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V--~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+  .+++|+|+.|+.+..
T Consensus        58 A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~~   87 (108)
T d2adba1          58 AQHAKLSLDGQNIYNACCTLRIDFSKLTSL   87 (108)
T ss_dssp             HHHHHHHHHSCCSSTTCCCCEEEECSSCSC
T ss_pred             HHHHHHHHCCCEeccCCcEEEEEecCCccc
Confidence            4678999999999  689999999987654

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.93  E-value=0.22  Score=29.50  Aligned_cols=28  Identities=21%  Similarity=0.125  Sum_probs=24.0

Q ss_pred             HHHHHHHHhcCceeeeeEEEeeeecccc
Q psy15193         20 KYQKLKRKVNGTHVQGVKLKVSLARRQL   47 (106)
Q Consensus        20 ~~qklk~emnGt~V~gIqLKVSiARRQP   47 (106)
                      -.+++++.|||..+.|-+|+|+.|.-++
T Consensus        55 ~A~~a~~~l~~~~l~g~~l~V~~A~~~~   82 (85)
T d2u2fa_          55 VTDQAIAGLNGMQLGDKKLLVQRASVGA   82 (85)
T ss_dssp             HHHHHHHTSSSCCCSSSCCEEEECCCCC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            3567899999999999999999997554

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=0.29  Score=29.90  Aligned_cols=28  Identities=14%  Similarity=0.017  Sum_probs=24.3

Q ss_pred             HHHHHHHhcCceeeeeEEEeeeeccccc
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVSLARRQLK   48 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVSiARRQP~   48 (106)
                      -++|++.|||..+.|-.|+|.+|.....
T Consensus        59 A~~Ai~~l~g~~~~gr~l~V~~a~~~~~   86 (114)
T d2f9da1          59 AKNACDHLSGFNVCNRYLVVLYYNANRA   86 (114)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCHHHH
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcCCCch
Confidence            4689999999999999999999976543

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.43  E-value=0.36  Score=28.86  Aligned_cols=21  Identities=33%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             HHHHHHHhcCceeeeeEEEee
Q psy15193         21 YQKLKRKVNGTHVQGVKLKVS   41 (106)
Q Consensus        21 ~qklk~emnGt~V~gIqLKVS   41 (106)
                      -++|+++|||+.+.|=.||||
T Consensus        69 A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          69 ALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             HHHHHHHHTTEEETTEEEEEE
T ss_pred             HHHHHHHhCCCEECCEEEEEC
Confidence            368899999999999999997