Psyllid ID: psy15223
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2492 | 2.2.26 [Sep-21-2011] | |||||||
| A4G3E6 | 959 | Isoleucine--tRNA ligase O | yes | N/A | 0.368 | 0.958 | 0.635 | 0.0 | |
| A6SW71 | 958 | Isoleucine--tRNA ligase O | yes | N/A | 0.369 | 0.961 | 0.620 | 0.0 | |
| Q2T0H3 | 945 | Isoleucine--tRNA ligase O | yes | N/A | 0.365 | 0.965 | 0.584 | 0.0 | |
| Q0BCK8 | 945 | Isoleucine--tRNA ligase O | yes | N/A | 0.365 | 0.965 | 0.580 | 0.0 | |
| B1JXC3 | 945 | Isoleucine--tRNA ligase O | yes | N/A | 0.365 | 0.965 | 0.584 | 0.0 | |
| A4JH32 | 945 | Isoleucine--tRNA ligase O | yes | N/A | 0.365 | 0.965 | 0.584 | 0.0 | |
| Q39DM8 | 945 | Isoleucine--tRNA ligase O | yes | N/A | 0.365 | 0.965 | 0.583 | 0.0 | |
| B1YVA4 | 945 | Isoleucine--tRNA ligase O | yes | N/A | 0.365 | 0.965 | 0.579 | 0.0 | |
| Q63WI3 | 945 | Isoleucine--tRNA ligase 1 | yes | N/A | 0.365 | 0.965 | 0.580 | 0.0 | |
| Q62HL4 | 945 | Isoleucine--tRNA ligase 1 | yes | N/A | 0.365 | 0.965 | 0.580 | 0.0 |
| >sp|A4G3E6|SYI_HERAR Isoleucine--tRNA ligase OS=Herminiimonas arsenicoxydans GN=ileS PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1298 bits (3359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/924 (63%), Positives = 731/924 (79%), Gaps = 5/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQ+KKIY +IR+AS RPKFILHDGPPYANGDIHIGHAVNKILKD
Sbjct: 33 MRGDLAKREPQWVKQWQDKKIYEKIREASKGRPKFILHDGPPYANGDIHIGHAVNKILKD 92
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK DG+DA YVPG+DCHGMPIEIQIEKLYGK+L E+ K+RA A E+IE+QK
Sbjct: 93 MIVKTRQFDGYDAPYVPGWDCHGMPIEIQIEKLYGKSLPTAEVLEKSRAYATEQIERQKK 152
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTMDF NEA+E+RA G + +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 153 DFIRLGVLGEWDNPYKTMDFGNEADEIRALGTLLEKGYVYRGLKPVNWCFDCGSALAEAE 212
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+EPEK+ F L LP+ KGY VIWT+TPWTIPANQAL+VHPE
Sbjct: 213 VEYQDKRDPAIDVGFPFAEPEKVAKAFGLAKLPTNKGYAVIWTTTPWTIPANQALNVHPE 272
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
F YALV + +LLILA +LV++ L+++G +G I C G L+ I F HP +++D
Sbjct: 273 FTYALVQTERKGETVLLILAADLVEATLQRYGLEGKTIATCVGEALAMIKFKHPFADVDP 332
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
YNRLSPIY G Y+T DSGTGIVHSAPAYGIEDF+ K +KD +I+ PVM DG + S
Sbjct: 333 GYNRLSPIYPGTYVTADSGTGIVHSAPAYGIEDFISCKSHGLKDDEIVAPVMADGKYASW 392
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLFGG++IW+ASK IC+ L + +LF + MF+HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 393 LPLFGGLTIWEASKPICAKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFAGMDV 452
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+PKN+ +LRE+A+ AI + +FFP WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 453 MPKNQGTTLRETALAAIEQTEFFPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 512
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
SG LHP+T EL+E IA+++E NGIE W LD KE LGDDA Y K+ DTLDVWFDSG TH
Sbjct: 513 SGDLHPRTPELLEQIAQRVEKNGIEAWLKLDPKELLGDDADMYLKNKDTLDVWFDSGTTH 572
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK+QL FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 573 QTVLRGSHKEQLAFPADLYLEGSDQHRGWFHSSLLTSSMLNGHAPYKALLTHGFVVDGEG 632
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKSKGN++ PQK+ + GA+ILRLWVA+TDYS +LSIS+EIL RV E+YRRIRNTLR
Sbjct: 633 KKMSKSKGNVVAPQKVSDSLGADILRLWVAATDYSGELSISDEILKRVTESYRRIRNTLR 692
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLL+NTSDF+ +++ ++DM+EID+YAI + +Q EI++HYR YEFH ++SKLQ YC+
Sbjct: 693 FLLSNTSDFDAGKDLVAVADMLEIDRYAIAQMNAMQNEIVAHYRAYEFHPVISKLQGYCT 752
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ SHARRSAQ++IWH+ QSLLRL++P+LSFT+EEAW IF+
Sbjct: 753 EDLGGFYLDILKDRLYTSGVTSHARRSAQSAIWHLTQSLLRLMAPVLSFTAEEAWVIFAG 812
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
K+ +G+TIFTQ +Y LP+V + LL KY +L+++R+ V ++LE++R G IGSSLQ
Sbjct: 813 KD----AGDTIFTQTYYALPEVADGDALLGKYTLLREVRNDVTKQLEEVRVAGGIGSSLQ 868
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ L+ + F L ++LKF L+TS S+ ++ EE +++ PS Y+KC RCWHY
Sbjct: 869 AEVALQASGDKFAALESLDDDLKFVLITSQASVKKVAGTEEESVLVTPSTYQKCERCWHY 928
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++ LC RC NLF +
Sbjct: 929 RADVGSHAEHEGLCGRCVANLFGK 952
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Herminiimonas arsenicoxydans (taxid: 204773) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 5 |
| >sp|A6SW71|SYI_JANMA Isoleucine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1272 bits (3291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/924 (62%), Positives = 723/924 (78%), Gaps = 3/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQ++K+Y +IRKAS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 30 MRGDLAKREPQWVKQWQDQKVYEKIRKASKGRPKFILHDGPPYANGDIHLGHAVNKILKD 89
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK DGFDA YVPG+DCHGMPIEIQIEK +GKNL E+ +KARA A E++E+QK
Sbjct: 90 MIVKTRQFDGFDAPYVPGWDCHGMPIEIQIEKQFGKNLPTAEVLSKARAYANEQVERQKK 149
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LG+WD YKTMDF NEA+ELRA G + +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 150 DFIRLGVLGQWDKPYKTMDFGNEADELRALGSLLEKGYVYRGLKPVNWCFDCGSALAEAE 209
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+EPEK+ F L LP+ KGY +IWT+TPWTIPANQAL+VH +
Sbjct: 210 VEYQDKRDPAIDVGFPFAEPEKVAKAFGLAKLPTNKGYAIIWTTTPWTIPANQALNVHGD 269
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
YALV++ +N P LLILA +LV + L++ G G I IC+G L I F HP +++D
Sbjct: 270 LPYALVNVVRNGVPQLLILAADLVGTVLQRCGLTGETIAICEGSALEGIRFKHPFADLDP 329
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
YNR SPIYL Y+ DSGTGIVHSAPAYGIEDF+ K M+D +II PVM DG + S
Sbjct: 330 GYNRESPIYLATYVAADSGTGIVHSAPAYGIEDFISCKSHGMRDDEIIAPVMGDGKYASW 389
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLFGG++IW+ASK IC+ L + +LF + MF+HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 390 LPLFGGLTIWEASKPICAKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFAGMDV 449
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+PKN+ +LRE+A+ AI + +FFPSWGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 450 MPKNQGATLRETALQAIEETEFFPSWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 509
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G LHP+T EL+E IA+++E +GIE W LD KE LG DA Y K+ DTLDVWFDSG TH
Sbjct: 510 TGDLHPRTPELLEQIAQRVEKDGIEAWLTLDPKELLGADADMYLKNKDTLDVWFDSGCTH 569
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK++L FPADLYLEGSDQHRGWFHSSLLTS ++N APYKALLTHGF VD +G
Sbjct: 570 QTVLRGSHKEELAFPADLYLEGSDQHRGWFHSSLLTSSMMNGRAPYKALLTHGFTVDGEG 629
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKS GN + PQK+ + GA+ILRLW+ASTDYS +LSIS+EIL RV E+YRRIRNT+R
Sbjct: 630 KKMSKSLGNTLAPQKISDTLGADILRLWIASTDYSGELSISDEILKRVTESYRRIRNTVR 689
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLL+NTSDF+ +++ ++DM+EID+YA+ + +Q EIL+HY++YEFH +VSKLQ+YCS
Sbjct: 690 FLLSNTSDFDAAKDLVPVADMLEIDRYAVAQMNAMQAEILAHYKVYEFHPVVSKLQMYCS 749
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ SHARRSAQ++IWH+ SLLRL++PILSFT+EEAW++F+
Sbjct: 750 EDLGGFYLDILKDRLYTSGVTSHARRSAQSAIWHLTHSLLRLMAPILSFTAEEAWAVFAS 809
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
+ + + TIFT Y+LP+V + LL KY +L+++R+ V ++LE++R G IGSSLQ
Sbjct: 810 PD--VNTDGTIFTHTFYQLPEVSDGAALLAKYTLLREVRNDVTKQLEEVRVAGGIGSSLQ 867
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK + F L ++LKF L+TS + Q+ + EE +++ PS Y+KC RCWHY
Sbjct: 868 AEVELKASGDKFAALASLDDDLKFVLITSQAGVSQVASAEEESVVVTPSTYQKCERCWHY 927
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++ LC RC NLF +
Sbjct: 928 RADVGSHAEHEGLCGRCVANLFGK 951
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Janthinobacterium sp. (strain Marseille) (taxid: 375286) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q2T0H3|SYI_BURTA Isoleucine--tRNA ligase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/921 (58%), Positives = 685/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W+K W+ + +Y +IR S RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVKDWEARGVYEKIRATSQGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
++VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ KARA A E+IE+QK
Sbjct: 85 MVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMAKARAYATEQIEKQKA 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LGEW N YKTM+F NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGEWGNPYKTMNFQNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVLFAFAEPEKTAHAFGLAALPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LL++A V++C+K FG G ++ +G KL+ + F HPL+
Sbjct: 265 IVYALVDTERG---LLVMAEERVEACMKDFGLTGRVVATTRGDKLANLRFHHPLAAAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R SP+YLGDY+T D+GTGIVHS+PAYG+EDF K M DSDIINPVM DG +I +L
Sbjct: 322 YKRTSPVYLGDYVTTDTGTGIVHSSPAYGVEDFTSCKAHGMTDSDIINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG++IW A+ I LK + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLTIWDANPKIVDALKAAGSLLRNEHYSHSYMHCWRHKTPIIYRATSQWFAGMDTQ 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P + K+LRE+A+ A++ F+PSWGK RL +MI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PADGGKTLRETALDAVDATAFYPSWGKQRLHAMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E GIE WQ LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVEQQGIEAWQTLDARELIGDDANLYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +L+ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMLDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN I P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGIDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + +EID+YA+ LQ E+L+HY YEFH +V+KLQ +CSE
Sbjct: 682 LLANLSDFDYAKDALPAEQWLEIDRYAVAFSAQLQAELLAHYEKYEFHPVVAKLQTFCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ S ARRSAQT+++H+ Q LLR+++P LSFT+EEAW +F
Sbjct: 742 DLGGFYLDVLKDRLYTSAPASKARRSAQTALYHVTQGLLRVLAPFLSFTAEEAWRVF--- 798
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ ETIFT+ +Y P++ N+ L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 799 ---LPQSETIFTETYYAYPEIANADALVAKWTLLRDVRGNVTKALEEARAANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
++ ++ + ++ L G++LKF L+TS+ ++ ++ S+E + + S Y+KC RCWHY+
Sbjct: 856 QVEVRASGARYDALASLGDDLKFVLITSAATVVKVDAQSDESVEVAASKYQKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q0BCK8|SYI_BURCM Isoleucine--tRNA ligase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/921 (58%), Positives = 690/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W+K+W+E+ IY +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVKEWEERGIYEKIRAASKGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
I+VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ +KARA A E+IE+QK+
Sbjct: 85 IVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMSKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LG+W N YKTM+F+NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGDWANPYKTMNFVNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVMFAFAEPEKTAQAFGLPALPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LLI+A V +C+ F G ++ G+KL+ + F HPL++
Sbjct: 265 IVYALVDTERG---LLIIAEERVAACMADFKLTGRVVATAPGVKLANLRFHHPLASAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R +P+YLGDY+T D+GTG+VHS+PAYGIEDF+ K M DSD INPVM DG +I +L
Sbjct: 322 YKRTAPVYLGDYVTTDTGTGVVHSSPAYGIEDFMSCKAHGMTDSDFINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG+SIW A+ I L + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLSIWDANPKIVDALNAAGSLLRSEKYTHSYMHCWRHKTPIIYRATSQWFAGMDVT 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P+++ K+LRE+A+ + F+PSWGK RL SMI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PRDDGKTLREAALEGVEATAFYPSWGKQRLFSMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E +GIE WQ+LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVEQSGIEAWQSLDPRELIGDDANMYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +++ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMIDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN + P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGVDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + + + +EID+YA+ LQ E+L HY YEFH +V+KLQ YCSE
Sbjct: 682 LLANLSDFDFAQHAVPVDEWLEIDRYAVAFSAQLQTELLGHYEKYEFHPVVAKLQTYCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ +S ARRSAQT+++H+ LLR+++P LSFT+EEAW +F
Sbjct: 742 DLGGFYLDVLKDRLYTSAADSRARRSAQTALYHLTHGLLRVLAPFLSFTAEEAWKVFQ-- 799
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +T+FT+ +Y P+V S L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 800 ----PASDTVFTETYYAYPEVAGSAALIEKWALLRDVRGNVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
E+ + + ++ L G++LKF L+TS+ ++ ++ + ++E + + S Y+KC RCWHY+
Sbjct: 856 EVAVHASGARYDALTSLGDDLKFVLITSAATVVKVDDEAQESVDVAASKYQKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|B1JXC3|SYI_BURCC Isoleucine--tRNA ligase OS=Burkholderia cenocepacia (strain MC0-3) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1198 bits (3099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/921 (58%), Positives = 692/921 (75%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W+K+W+E+ IY +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVKEWEERGIYEKIRAASKGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
I+VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ +KARA A E+IE+QK+
Sbjct: 85 IVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMSKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LG+W N YKTM+F+NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGDWANPYKTMNFVNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVMFAFAEPEKTAHAFGLPALPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LLI+A V++C+ F G ++ G+KL+ + F HPL++
Sbjct: 265 IIYALVDTERG---LLIIAQERVEACMADFKLTGRVVATAPGVKLANLRFHHPLASAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R +P+YLGDY+T D+GTG+VHS+PAYGIEDF+ K M DSDIINPVM DG +I +L
Sbjct: 322 YKRTAPVYLGDYVTTDTGTGVVHSSPAYGIEDFMSCKAHGMTDSDIINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG+SIW A+ + L + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLSIWDANPKVVDALNAAGSLLRSEKYTHSYMHCWRHKTPIIYRATSQWFAGMDVT 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P++ K+LRE+A+ I+ F+PSWGK RL SMI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PQDGGKTLRETALEGIDATAFYPSWGKQRLFSMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E +GIE WQ+LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVEQSGIEAWQSLDPRELIGDDANLYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +++ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMIDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN I P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGIDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + + + +EID+YA+ LQ E+L HY YEFH +V+KLQ YCSE
Sbjct: 682 LLANLSDFDFAQHAVPVDEWLEIDRYAVAFSQQLQTELLGHYEKYEFHPVVAKLQTYCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ +S ARRSAQT+++H+ LLR+++P LSFT+EEAW +F
Sbjct: 742 DLGGFYLDVLKDRLYTSAADSRARRSAQTALYHLTHGLLRVLAPFLSFTAEEAWKVFQ-- 799
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +TIFT+ +Y P+V S L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 800 ----PASDTIFTETYYAYPEVAGSAALIEKWALLRDVRGNVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
E+ + + ++ L G++LKF L+TS+ ++ ++ + ++E + + S Y+KC RCWHY+
Sbjct: 856 EVAVHASGARYDALTSLGDDLKFVLITSAATVVKVDDEAQESVDVAASKYQKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia cenocepacia (strain MC0-3) (taxid: 406425) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|A4JH32|SYI_BURVG Isoleucine--tRNA ligase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/921 (58%), Positives = 690/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W+K+W+E+ IY +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVKEWEERGIYEKIRAASKGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
I+VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ +KARA A E+IE+QK+
Sbjct: 85 IVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMSKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LG+W N YKTM+F+NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGDWANPYKTMNFVNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVMFAFAEPEKTAQAFGLPALPRADGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LLI+A V++C+ F G I+ G+KL+ + F HPL++
Sbjct: 265 IVYALVDTERG---LLIIAEERVEACMADFKLTGRIVATAPGVKLANLRFHHPLASAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R +P+YLGDY+T D+GTG+VHS+PAYGIEDF+ K M DSDIINPVM DG +I +L
Sbjct: 322 YKRTAPVYLGDYVTTDTGTGVVHSSPAYGIEDFVSCKSHGMTDSDIINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG+SIW A+ + L+ + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLSIWDANPKVVEALRAAGSLLRSEKYTHSYMHCWRHKTPIIYRATSQWFAGMDVT 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P K+LRE+A+ I+ F+PSWGK RL SMI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PHAGGKTLRETALEGIDATAFYPSWGKQRLFSMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E +GIE WQ+LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVEQSGIEAWQSLDPRELIGDDANLYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +++ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMIDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN I P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGIDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + + + +EID+YA+ LQ E+L HY YEFH +V+KLQ YCSE
Sbjct: 682 LLANLSDFDFAQHAVPVDEWLEIDRYAVAFSAQLQTELLGHYEKYEFHPVVAKLQTYCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ +S ARRSAQT+++H+ Q LLR+++P LSFT+EEAW +F
Sbjct: 742 DLGGFYLDVLKDRLYTSAADSRARRSAQTALYHLTQGLLRVLAPFLSFTAEEAWKVFQ-- 799
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +T+FT+ +Y P+V + L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 800 ----PASDTVFTETYYAYPEVAGAAALIEKWALLRDVRGNVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
E+ + + ++ L G++LKF L+TS+ S+ ++ + + E + + S Y+KC RCWHY+
Sbjct: 856 EVAVHASGARYDALTSLGDDLKFVLITSAASVVKVDDEAHESVDVAASKYQKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG ++P LC RCF+NLF
Sbjct: 916 EDVGAHAEHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q39DM8|SYI_BURS3 Isoleucine--tRNA ligase OS=Burkholderia sp. (strain 383) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/921 (58%), Positives = 690/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W+K+W+E+ IY +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVKEWEERGIYEKIRAASAGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
I+VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ +KARA A E+IE+QK+
Sbjct: 85 IVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMSKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LG+W N YKTM+F+NEA ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGDWANPYKTMNFVNEAEELRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVMFAFAEPEKTAQAFGLPALPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LLI+A V++C+ F G ++ G+KL+ + F HPL++
Sbjct: 265 IVYALVDTERG---LLIIAEERVEACMTDFKLTGRVVATAPGVKLAGLRFHHPLASAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R +P+YLGDY+T D+GTG+VHS+PAYGIEDF+ K M DSD INPVM DG +I +L
Sbjct: 322 YKRTAPVYLGDYVTTDTGTGVVHSSPAYGIEDFVSCKAHGMTDSDFINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG+SIW A+ I L + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLSIWDANPKIVEALNAAGSLLRSEKYTHSYMHCWRHKTPIIYRATSQWFAGMDVT 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P++ K+LRE+A+ ++ F+PSWGK RL SMI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PRDGGKTLRETALEGVDATAFYPSWGKQRLFSMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E +GIE WQ LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVEQSGIEAWQTLDPRELIGDDANLYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +++ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMIDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN I P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGIDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + + + +EID+YA+ LQ E+L HY YEFH +V+KLQ YCSE
Sbjct: 682 LLANLSDFDFAQHAVPVDEWLEIDRYAVAFSQQLQTELLGHYEKYEFHPVVAKLQTYCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ +S ARRSAQT+++H+ LLR+++P LSFT+EEAW +F
Sbjct: 742 DLGGFYLDVLKDRLYTSAADSRARRSAQTALYHLTHGLLRVLAPFLSFTAEEAWKVFQ-- 799
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +TI+T+ +Y P+V S L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 800 ----PASDTIYTETYYAYPEVAGSAALIEKWALLRDVRGNVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
E+ + + ++ L G++LKF L+TS+ ++ ++ + ++E + + S Y+KC RCWHY+
Sbjct: 856 EVAVHASGARYDALTSLGDDLKFVLITSAATVVKVDDEAQESVDVAASKYQKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia sp. (strain 383) (taxid: 269483) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|B1YVA4|SYI_BURA4 Isoleucine--tRNA ligase OS=Burkholderia ambifaria (strain MC40-6) GN=ileS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1197 bits (3097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/921 (57%), Positives = 690/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W+K+W+E+ IY +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVKEWEERGIYEKIRAASKGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
I+VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ +KARA A E+IE+QK+
Sbjct: 85 IVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMSKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LG+W N YKTM+F+NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGDWANPYKTMNFVNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVMFAFAEPEKTAQAFGLPALPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LLI+A V +C+ F G ++ G+KL+ + F HPL++
Sbjct: 265 IVYALVDTERG---LLIIAEERVAACMADFKLTGRVVATAPGVKLANLRFHHPLASAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R +P+YLGDY+T D+GTG+VHS+PAYGIEDF+ K M DSD INPVM DG +I +L
Sbjct: 322 YKRTAPVYLGDYVTTDTGTGVVHSSPAYGIEDFMSCKAHGMTDSDFINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG+SIW A+ I L + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLSIWDANPKIVDALNVAGSLLRSEKYTHSYMHCWRHKTPIIYRATSQWFAGMDVT 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P+++ ++LRE+A+ + F+PSWGK RL SMI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PRDDGRTLREAALEGVEATAFYPSWGKQRLFSMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E +GIE WQ+LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVEQSGIEAWQSLDPRELIGDDANMYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +++ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMIDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN + P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGVDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + + + +EID+YA+ LQ E+L HY YEFH +V+KLQ YCSE
Sbjct: 682 LLANLSDFDFAQHAVPVDEWLEIDRYAVAFSAQLQTELLGHYEKYEFHPVVAKLQTYCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ +S ARRSAQT+++H+ LLR+++P LSFT+EEAW +F
Sbjct: 742 DLGGFYLDVLKDRLYTSAADSRARRSAQTALYHLTHGLLRVLAPFLSFTAEEAWKVFQ-- 799
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +T+FT+ +Y P+V S L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 800 ----PASDTVFTETYYAYPEVAGSAALIDKWALLRDVRGNVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
E+ + + ++ L G++LKF L+TS+ ++ ++ + ++E + + S Y+KC RCWHY+
Sbjct: 856 EVAVHASGARYDALTSLGDDLKFVLITSAATVVKVDDEAQESVDVAASKYQKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia ambifaria (strain MC40-6) (taxid: 398577) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q63WI3|SYI1_BURPS Isoleucine--tRNA ligase 1 OS=Burkholderia pseudomallei (strain K96243) GN=ileS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/921 (58%), Positives = 685/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W++ W+ + +Y +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVEDWEARGVYEKIRAASQGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
++VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ KARA A E+IE+QK+
Sbjct: 85 MVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKQFGKSLPAAEVMAKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LGEW N YKTM+F NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGEWGNPYKTMNFQNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVLFAFAEPEKTAHAFGLAELPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LL++A V++C+K FG G +I G KL+ + F HPL+
Sbjct: 265 IVYALVDTERG---LLVMAEERVEACMKDFGLTGRVIARTPGEKLANLRFHHPLAAAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R SP+YLGDY+T D+GTG+VHS+PAYG+EDF K M DSDIINPVM DG +I +L
Sbjct: 322 YKRTSPVYLGDYVTTDTGTGVVHSSPAYGVEDFTSCKAHGMTDSDIINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG++IW A+ I LK + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLTIWDANPKIVDALKAAGSLLRNERYAHSYMHCWRHKTPIIYRATSQWFAGMDTQ 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P + K+LRE+A+ A++ F+PSWGK RL +MI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PADGGKTLRETALDAVDATAFYPSWGKQRLHAMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E GIE WQ LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVERQGIEAWQTLDARELIGDDANLYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +L+ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMLDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN I P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGIDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + +EID+YA+ LQ E+L+HY YEFH +V+KLQ +CSE
Sbjct: 682 LLANLSDFDYAKDALPAGQWLEIDRYAVAFAAQLQAELLAHYEKYEFHPVVAKLQTFCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ S ARRSAQT+++H+ Q LLR+++P LSFT+EEAW +F +
Sbjct: 742 DLGGFYLDVLKDRLYTSAPASPARRSAQTALYHVTQGLLRVLAPFLSFTAEEAWRVFQPQ 801
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +TIFT+ +Y P++ ++ L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 802 S------DTIFTETYYAYPEIAGAEALIAKWTLLRDVRGDVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
++ ++ + ++ L G++LKF L+TS+ ++ ++ +E + + S Y KC RCWHY+
Sbjct: 856 QVEVRASGARYDALASLGDDLKFVLITSAATVVKVDAQGDESVDVAASTYPKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia pseudomallei (strain K96243) (taxid: 272560) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q62HL4|SYI1_BURMA Isoleucine--tRNA ligase 1 OS=Burkholderia mallei (strain ATCC 23344) GN=ileS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1194 bits (3090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/921 (58%), Positives = 684/921 (74%), Gaps = 9/921 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L KREP W++ W+ + +Y +IR AS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 25 MRGDLPKREPQWVEDWEARGVYEKIRAASQGRPKFILHDGPPYANGDIHLGHAVNKILKD 84
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
++VK NM GFDA YVPG+DCHGMPIEIQIEK +GK+L E+ KARA A E+IE+QK+
Sbjct: 85 MVVKSRNMAGFDAPYVPGWDCHGMPIEIQIEKRFGKSLPAAEVMAKARAYATEQIEKQKV 144
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F RLG+LGEW N YKTM+F NEA E+RA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 145 GFKRLGVLGEWGNPYKTMNFQNEAEEIRALGKIIEKGYVYRGLKPVNWCFDCGSALAEAE 204
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EYK + D +I V F+F+EPEK F L LP +G IVIWT+TPWTIPANQAL++HPE
Sbjct: 205 VEYKDRTDPTIDVLFAFAEPEKTAHAFGLAELPRAEGGIVIWTTTPWTIPANQALNLHPE 264
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
YALV + LL++A V++C+K FG G +I G KL+ + F HPL+
Sbjct: 265 IVYALVDTERG---LLVMAEERVEACMKDFGLTGRVIARTPGEKLANLRFHHPLAAAHPG 321
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
Y R SP+YLGDY+T D+GTG+VHS+PAYG+EDF K M DSDIINPVM DG +I +L
Sbjct: 322 YKRTSPVYLGDYVTTDTGTGVVHSSPAYGVEDFTSCKAHGMTDSDIINPVMGDGRYIESL 381
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 1987
PLFGG++IW A+ I LK + +L E + HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 382 PLFGGLTIWDANPKIVDALKAAGSLLRNERYAHSYMHCWRHKTPIIYRATSQWFAGMDTQ 441
Query: 1988 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKS 2047
P K+LRE+A+ A++ F+PSWGK RL +MI NRPDWT+SRQR WGVP+AFF+HK++
Sbjct: 442 PAGGGKTLRETALDAVDATAFYPSWGKQRLHAMIANRPDWTLSRQRQWGVPMAFFVHKET 501
Query: 2048 GKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQ 2107
G+LHP+TLEL+E +AK++E GIE WQ LD +E +GDDA Y+K+ DTLDVWFDSG TH
Sbjct: 502 GELHPRTLELLEEVAKRVERQGIEAWQTLDARELIGDDANLYEKNRDTLDVWFDSGTTHW 561
Query: 2108 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
V+RGSHK QL FPADLYLEGSDQHRGWFHSSLLT+ +L+ APYK LLTHGF VD +G+
Sbjct: 562 HVLRGSHKDQLQFPADLYLEGSDQHRGWFHSSLLTASMLDGRAPYKGLLTHGFTVDGEGR 621
Query: 2168 KMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRF 2227
KMSKS GN I P ++ N GAEI+RLW+ASTDYS +L+IS EIL RV E YRRIRNTLRF
Sbjct: 622 KMSKSLGNGIDPHEVANRLGAEIIRLWIASTDYSGELAISEEILKRVTEGYRRIRNTLRF 681
Query: 2228 LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSE 2287
LLAN SDF+ + + +EID+YA+ LQ E+L+HY YEFH +V+KLQ +CSE
Sbjct: 682 LLANLSDFDYAKDALPAGQWLEIDRYAVAFAAQLQAELLAHYEKYEFHPVVAKLQTFCSE 741
Query: 2288 DLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347
DLG FYLD+LKDRLYT+ S ARRSAQT+++H+ Q LLR+++P LSFT+EEAW +F +
Sbjct: 742 DLGGFYLDVLKDRLYTSAPASPARRSAQTALYHVTQGLLRVLAPFLSFTAEEAWRVFQPQ 801
Query: 2348 NFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA 2407
+ +TIFT+ +Y P++ ++ L+ K+ +L+ +R V + LE+ R+ IGSSLQA
Sbjct: 802 S------DTIFTETYYAYPEIAGAEALIAKWTLLRDVRGDVTKALEEARTANRIGSSLQA 855
Query: 2408 EIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHYQ 2467
++ ++ + ++ L G++LKF L+TS+ ++ ++ +E + + S Y KC RCWHY+
Sbjct: 856 QVEVRASGARYDALASLGDDLKFVLITSAATVVKVDAQGDESVDVAASTYPKCERCWHYR 915
Query: 2468 ADVGERDDYPDLCNRCFNNLF 2488
DVG D+P LC RCF+NLF
Sbjct: 916 EDVGAHADHPTLCGRCFSNLF 936
|
Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Burkholderia mallei (strain ATCC 23344) (taxid: 243160) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2492 | ||||||
| 415918741 | 964 | isoleucyl-tRNA synthetase [Herbaspirillu | 0.370 | 0.957 | 0.648 | 0.0 | |
| 409405198 | 964 | isoleucyl-tRNA synthetase [Herbaspirillu | 0.370 | 0.957 | 0.648 | 0.0 | |
| 399019592 | 964 | isoleucyl-tRNA synthetase [Herbaspirillu | 0.369 | 0.956 | 0.647 | 0.0 | |
| 340788442 | 969 | isoleucyl-tRNA synthetase [Collimonas fu | 0.370 | 0.952 | 0.641 | 0.0 | |
| 300310736 | 964 | isoleucyl-tRNA synthetase [Herbaspirillu | 0.370 | 0.957 | 0.635 | 0.0 | |
| 398834857 | 964 | isoleucyl-tRNA synthetase [Herbaspirillu | 0.370 | 0.957 | 0.625 | 0.0 | |
| 134094085 | 959 | isoleucyl-tRNA synthetase [Herminiimonas | 0.368 | 0.958 | 0.635 | 0.0 | |
| 152980423 | 958 | isoleucyl-tRNA synthetase [Janthinobacte | 0.369 | 0.961 | 0.620 | 0.0 | |
| 329903782 | 962 | Isoleucyl-tRNA synthetase [Oxalobacterac | 0.369 | 0.958 | 0.616 | 0.0 | |
| 427401000 | 965 | isoleucyl-tRNA synthetase [Massilia timo | 0.369 | 0.955 | 0.599 | 0.0 |
| >gi|415918741|ref|ZP_11554249.1| isoleucyl-tRNA synthetase [Herbaspirillum frisingense GSF30] gi|407761180|gb|EKF70297.1| isoleucyl-tRNA synthetase [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/924 (64%), Positives = 745/924 (80%), Gaps = 1/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQEKK+Y +IRKAS RPKFILHDGPPYANGDIHIGHAVNKILKD
Sbjct: 34 MRGDLAKREPQWVKQWQEKKVYERIRKASAGRPKFILHDGPPYANGDIHIGHAVNKILKD 93
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK NM GFDAQYVPG+DCHGMPIEIQIEK +GKNL E+Q KARA A E+IE+QK
Sbjct: 94 MIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKQFGKNLPVAEVQAKARAYAGEQIERQKA 153
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTM+F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 154 DFIRLGVLGEWDNPYKTMNFSNEADELRALGTILEKGYVYRGLKPVNWCFDCGSALAEAE 213
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+E +K+ + F L +LP+ GYIVIWT+TPWTIP+NQAL+VHPE
Sbjct: 214 VEYQDKRDPAIDVGFPFAEHDKLATAFGLADLPTRHGYIVIWTTTPWTIPSNQALNVHPE 273
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
F+YALV +N LLILA +LV+SCL++FG +G II G KLS I F HPL+ D
Sbjct: 274 FEYALVETSRNGEATLLILAKDLVESCLQRFGLEGKIIATTTGEKLSLICFHHPLAKADA 333
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSP+YLG+Y+T DSGTGIVHSAPAYGIEDF+ K MKD DI+NPVM DG + S
Sbjct: 334 GYDRLSPVYLGEYVTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDILNPVMGDGRYASW 393
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLF G+SIW+ASK IC+ L++ +LF + MF+HSYMHCWRHKTPI+YR T QWF +MD
Sbjct: 394 LPLFAGLSIWEASKPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIVYRATSQWFASMDN 453
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ SLR++A+ I FFP WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 454 TPKDGGPSLRQTALQGIEDTAFFPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 513
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G+LHP+T ELIE +A++IE +GIE WQ LD KE LG+DA +Y K+ DTLDVWFDSG TH
Sbjct: 514 TGELHPRTPELIEQVAQRIEKSGIEAWQALDPKELLGEDAEHYVKNRDTLDVWFDSGTTH 573
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSH++Q FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 574 QTVLRGSHRQQSQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG 633
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKSKGN++ PQK+ + GAEILRLWVASTDYS +LSIS+EIL RVVE YRRIRNTLR
Sbjct: 634 KKMSKSKGNVVAPQKVSDSLGAEILRLWVASTDYSGELSISDEILKRVVEAYRRIRNTLR 693
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANT+DF+P + + +++++EID+YAI N+ LQ E+L+H+ YEFH +V+KLQ+YCS
Sbjct: 694 FLLANTADFDPAQHAVPVAELLEIDRYAIANMARLQGEVLAHFESYEFHPVVAKLQMYCS 753
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ +S ARRSAQT++WHI QSLLRL++PILSFT+EEAWS F+
Sbjct: 754 EDLGGFYLDILKDRLYTSGVDSAARRSAQTAVWHITQSLLRLMAPILSFTAEEAWSFFAG 813
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
K + SGETIF+Q +Y LP+V +++ LL K+ +L ++R+ V ++LE++R G IGSSLQ
Sbjct: 814 KEAFEASGETIFSQTYYALPEVGDAEALLAKFAVLHEVRAAVTKQLEEVRIAGSIGSSLQ 873
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK++ ++L GE+LKF L+TS+ S+ ++ + EE +++ PS +KC RCWHY
Sbjct: 874 AEVELKVSGEKADLLESLGEDLKFVLITSAASVTRVASAEEEGVVVTPSTQQKCERCWHY 933
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++P LC RC +NLF +
Sbjct: 934 RADVGSHPEHPGLCGRCVSNLFGQ 957
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409405198|ref|ZP_11253660.1| isoleucyl-tRNA synthetase [Herbaspirillum sp. GW103] gi|386433747|gb|EIJ46572.1| isoleucyl-tRNA synthetase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 1328 bits (3438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/924 (64%), Positives = 738/924 (79%), Gaps = 1/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQEKK+Y +IRKAS RPKFILHDGPPYANGDIHIGHAVNKILKD
Sbjct: 34 MRGDLAKREPQWVKEWQEKKVYERIRKASAGRPKFILHDGPPYANGDIHIGHAVNKILKD 93
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK NM GFDAQYVPG+DCHGMPIEIQIEK +GKNL E+Q KARA A E+IE+QK
Sbjct: 94 MIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKQFGKNLPVAEVQAKARAYAGEQIERQKA 153
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTM+F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 154 DFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYRGLKPVNWCFDCGSALAEAE 213
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+E +K+ + F L LP+ GYIVIWT+TPWTIPANQAL+VHPE
Sbjct: 214 VEYQDKRDPAIDVGFPFAEHDKVATAFGLTELPTRNGYIVIWTTTPWTIPANQALNVHPE 273
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
F+YALV +N LLILA +LV+SCL++FG +G II G KLS I F HPL+ D
Sbjct: 274 FEYALVQTTRNGEATLLILAKDLVESCLQRFGLEGQIIATTTGEKLSLIRFHHPLAKADA 333
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSP++LGDY+T DSGTGIVHS+PAYGIEDF+ K MKD DI+NPVM DG + S
Sbjct: 334 GYDRLSPVFLGDYVTADSGTGIVHSSPAYGIEDFVSCKAHGMKDDDILNPVMGDGRYASW 393
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLF G++IW+ASK IC L + +LF + MF+HSYMHCWRHKTPIIYR T QWF +MD
Sbjct: 394 LPLFAGLTIWEASKPICGKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDN 453
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ SLR++A+ I FFP WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 454 TPKDGGPSLRQTALQGIEDTAFFPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 513
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G+LHP+T ELIE +A++IE +GIE WQ LD KE LG+DA +Y K+ DTLDVWFDSG TH
Sbjct: 514 TGELHPRTPELIEQVAQRIEKSGIEAWQALDPKELLGEDAEHYLKNRDTLDVWFDSGTTH 573
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSH +Q FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 574 QTVLRGSHAQQSQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG 633
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKSKGN++ PQK+ + GAEILRLWVASTDYS +LSIS+EIL RVVE YRRIRNTLR
Sbjct: 634 KKMSKSKGNVVAPQKVSDSLGAEILRLWVASTDYSGELSISDEILKRVVEAYRRIRNTLR 693
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANT+DF+P + + +++M+EID+YAI N+ LQ E+L+H+ YEFH +V+KLQ+YCS
Sbjct: 694 FLLANTADFDPAQHAVPVAEMLEIDRYAIANMARLQAEVLAHFETYEFHPVVAKLQMYCS 753
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ S ARRSAQT++WHI QSLLRL++PILSFT+EEAW F+
Sbjct: 754 EDLGGFYLDILKDRLYTSGVESAARRSAQTAVWHITQSLLRLMAPILSFTAEEAWRFFAG 813
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
K+ + SGETIF+Q++Y LP+V +S LL K+ +L ++R+ V ++LE++R G IGSSLQ
Sbjct: 814 KDAFEASGETIFSQVYYALPEVADSAALLSKFAVLHEVRAAVTKQLEEVRIAGSIGSSLQ 873
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK+ +L G++LKF L+TS+ + + + EE +++ PS ++KC RCWHY
Sbjct: 874 AEVELKVAGEKAALLESLGDDLKFVLITSAARVTPVATVEEEAVVVTPSTHQKCERCWHY 933
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG D+P LC RC++NLF +
Sbjct: 934 RADVGSHADHPGLCGRCYSNLFGQ 957
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399019592|ref|ZP_10721738.1| isoleucyl-tRNA synthetase [Herbaspirillum sp. CF444] gi|398097483|gb|EJL87787.1| isoleucyl-tRNA synthetase [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 1315 bits (3403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/923 (64%), Positives = 737/923 (79%), Gaps = 1/923 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQ KK+Y +IR+AS RPKFILHDGPPYANG+IH+GHAVNKILKD
Sbjct: 34 MRGDLAKREPQWVKEWQSKKLYQRIRQASAGRPKFILHDGPPYANGEIHLGHAVNKILKD 93
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK NM GFDAQYVPG+DCHGMPIEIQIEK YGKNL E+Q KARA A E+IE QK
Sbjct: 94 MIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKKYGKNLPVAEVQAKARAYANEQIELQKK 153
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTM+F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 154 DFIRLGVLGEWDNPYKTMNFSNEADELRALGTILEKGYVYRGLKPVNWCFDCGSALAEAE 213
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+E +KI F L LP+ KGYIVIWT+TPWTIP+NQAL+VHPE
Sbjct: 214 VEYQDKRDPAIDVGFPFAEHDKIAKAFGLAKLPADKGYIVIWTTTPWTIPSNQALNVHPE 273
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
FDYALV +N P LLILA +LV+SCL+++G +G +I KG LS I F HPL+ D
Sbjct: 274 FDYALVQTERNGEPTLLILAKDLVESCLQRYGLEGKVIATAKGEALSLIAFHHPLATADK 333
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSPIYLG+Y+T DSGTGIVHSAPAYGIEDF+ K MKD DII+PVM DG + S+
Sbjct: 334 GYDRLSPIYLGEYVTADSGTGIVHSAPAYGIEDFVSCKAHGMKDDDIISPVMGDGRYASS 393
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLF G++IW+ASK IC+ L+++ LF + MF+HSYMHCWRHKTPIIYR T QWF +MD
Sbjct: 394 LPLFAGLTIWEASKPICAKLEETGALFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDN 453
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ KSLRE+A+ I FFP+WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 454 TPKDGGKSLRETALQGIEDTAFFPAWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 513
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G LHP+T EL+E IA++IE GIE WQ LD KE LGD+A Y K+ DTLDVWFDSG TH
Sbjct: 514 TGLLHPRTPELLEQIAQRIEQGGIEAWQTLDPKELLGDEADQYLKNKDTLDVWFDSGSTH 573
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK++L FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 574 QTVLRGSHKQELQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG 633
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
+KMSKS N ++PQK+ + GAEILRLWVAS+DYS ++SIS+EIL RV E YRRIRNTLR
Sbjct: 634 RKMSKSLKNGVEPQKVADSLGAEILRLWVASSDYSGEISISDEILKRVTEAYRRIRNTLR 693
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANT+DF+ N + +++M+EID+YAI N+ NLQKEIL+HY YEFH +VSKLQ+YCS
Sbjct: 694 FLLANTADFDMAKNAVPVAEMLEIDRYAIANMANLQKEILAHYETYEFHPVVSKLQMYCS 753
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ +SHARRSAQT+IWHI Q+LLRL++P LSFT+EEAWS F+
Sbjct: 754 EDLGGFYLDILKDRLYTSGVDSHARRSAQTAIWHITQALLRLMAPTLSFTAEEAWSFFAG 813
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
K+ + ES ETIF+Q +Y LP+V ++ L+ K+ +L ++R+ V ++LE++R G IGSSLQ
Sbjct: 814 KDAFAESSETIFSQTYYTLPEVAQAEALVAKFNVLHEVRAAVTKQLEEVRIAGNIGSSLQ 873
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK++ +L G++LKF L+TS+ + ++ ++E I++ PS +KC RCWHY
Sbjct: 874 AEVELKVSGDKVALLQSLGDDLKFVLITSAAKVTAVEAEADEAIVVTPSANQKCERCWHY 933
Query: 2467 QADVGERDDYPDLCNRCFNNLFA 2489
+ADVG ++ LC RC NLF
Sbjct: 934 RADVGSHAEHEGLCGRCVANLFG 956
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340788442|ref|YP_004753907.1| isoleucyl-tRNA synthetase [Collimonas fungivorans Ter331] gi|340553709|gb|AEK63084.1| Isoleucyl-tRNA synthetase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 1313 bits (3397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/924 (64%), Positives = 736/924 (79%), Gaps = 1/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQEKK+Y +IRKAS RPKFILHDGPPYANG+IH+GHAVNKILKD
Sbjct: 39 MRGDLAKREPQWVKQWQEKKVYERIRKASKGRPKFILHDGPPYANGEIHLGHAVNKILKD 98
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK NM GFDA YVPG+DCHGMPIEIQIEK YGKNL E+Q+KARA A E+I+ Q+
Sbjct: 99 MIVKARNMAGFDAPYVPGWDCHGMPIEIQIEKKYGKNLPVAEVQSKARAYANEQIDLQRK 158
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN Y TM F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 159 DFIRLGVLGEWDNPYLTMAFGNEADELRALGAILEKGYVYRGLKPVNWCFDCGSALAEAE 218
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D SI VGF F+EP+KI + F L +LP+G+GY+VIWT+TPWTIP+NQAL+VHPE
Sbjct: 219 VEYQDKRDPSIDVGFPFAEPDKIAAAFGLASLPAGQGYVVIWTTTPWTIPSNQALNVHPE 278
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
DYALV +N PLLLILA +LV+ L++FG +G +I CKG L+ INF HPL+ D
Sbjct: 279 VDYALVQTTRNGAPLLLILAQDLVEDSLQRFGLEGKVIASCKGEALALINFKHPLAASDP 338
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
YNRLSP+YLGDY+T DSGTGIVHSAPAYGIEDF+ K MKD DII+PVM DG F S
Sbjct: 339 GYNRLSPVYLGDYVTTDSGTGIVHSAPAYGIEDFISCKAHGMKDDDIISPVMGDGKFASW 398
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LP F GM+IW+ASK IC+ L+++ LF + MF+HSYMHCWRHKTPIIYR T QWF +MD
Sbjct: 399 LPFFAGMTIWEASKPICAKLEEAGALFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDN 458
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+PK+ + SLR +A+ AI + FFP+WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 459 LPKDGQPSLRATALQAIEETAFFPAWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 518
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
SG+LHP+T EL+E IA+++E +GIE WQ LD KE LGDDAVNY K+ DTLDVWFDSG TH
Sbjct: 519 SGQLHPRTPELLEQIAQRVEQSGIEAWQALDPKELLGDDAVNYLKNKDTLDVWFDSGSTH 578
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSH QL FPADLYLEGSDQHRGWFHSSLLTS +LN APY ALLTHGFVVD +G
Sbjct: 579 QTVLRGSHASQLQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYNALLTHGFVVDGEG 638
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
+KMSKS N ++PQK+ + GAEILRLWVA++DYS +++IS+EIL RV E+YRRIRNTLR
Sbjct: 639 RKMSKSLKNGVEPQKVADSLGAEILRLWVAASDYSGEITISDEILKRVTESYRRIRNTLR 698
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANTSDF+P + + I+D++EID+YAI ++ LQ +IL HY YEFH ++SKLQ+YCS
Sbjct: 699 FLLANTSDFDPLKDAVPIADLLEIDRYAIASMAQLQADILQHYETYEFHPVISKLQMYCS 758
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ +S ARRSAQT+IWHI Q+LLR+++P LSFT+EEAWS F+
Sbjct: 759 EDLGGFYLDILKDRLYTSGVSSPARRSAQTAIWHITQALLRVMAPTLSFTAEEAWSFFAS 818
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
+ S ETIFTQ +Y LP++ + L+ K+ L+ +R+ V ++LE++R G IGSSLQ
Sbjct: 819 PEAFAASDETIFTQTYYTLPEIDGAAALIDKFSALRAVRADVTKQLEEVRVAGGIGSSLQ 878
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ +K +L+ G++LKF L+TSS ++ ++ +EE I++ PS +KC RCWHY
Sbjct: 879 AEVEIKAAPAKHALLSSLGDDLKFVLITSSATVSEVATEAEETIVVTPSAQQKCERCWHY 938
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++P LC RC NLF +
Sbjct: 939 RADVGSHPEHPGLCGRCVANLFGD 962
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300073521|gb|ADJ62920.1| isoleucyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 1301 bits (3366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/924 (63%), Positives = 734/924 (79%), Gaps = 1/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQEKK+Y +IRKAS RPKFILHDGPPYANG+IH+GHAVNKILKD
Sbjct: 34 MRGDLAKREPQWVKQWQEKKVYERIRKASAGRPKFILHDGPPYANGEIHLGHAVNKILKD 93
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK NM GFDAQYVPG+DCHGMPIEIQIEK YGKNL E+Q KARA A E+I QK
Sbjct: 94 MIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKKYGKNLPVAEVQAKARAYANEQIALQKK 153
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTM+F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 154 DFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYRGLKPVNWCFDCGSALAEAE 213
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+E +K+ + F L +LP+ GYIVIWT+TPWTIPANQAL+VHPE
Sbjct: 214 VEYQDKRDPAIDVGFPFAEHDKVATAFGLTDLPTRHGYIVIWTTTPWTIPANQALNVHPE 273
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
F+YALV +N LLILA +LV SCL++FG +G II G KLS I F HPL+ D
Sbjct: 274 FEYALVETSRNGEATLLILAKDLVASCLERFGLEGKIIATTTGEKLSLIRFHHPLAKADA 333
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSP++LG+Y+T DSGTGIVHS+PAYGIEDF+ K MKD DI+NPVM DG + S
Sbjct: 334 GYDRLSPVFLGEYVTADSGTGIVHSSPAYGIEDFVSCKAHGMKDDDILNPVMGDGRYASW 393
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLF G++IW+ASK IC L++ +LF + MF HSYMHCWRHK+PIIYR T QWF +MD
Sbjct: 394 LPLFAGLTIWEASKPICDKLEEIGSLFKLIMFSHSYMHCWRHKSPIIYRATSQWFASMDN 453
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ SLR++A+ I FFP WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 454 TPKDGGPSLRQTALQGIEDTAFFPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 513
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G+LHP+T EL+E IA++IE GIE WQ LD KE LGD+A Y K+ DTLDVWFDSG TH
Sbjct: 514 TGELHPRTPELLEQIAQRIEQGGIEAWQALDPKELLGDEADQYLKNKDTLDVWFDSGSTH 573
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSH+++L FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 574 QTVLRGSHRQELQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG 633
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
+KMSKS N ++PQK+ + GAEILRLWVAS+DYS ++SIS EIL RV E YRRIRNTLR
Sbjct: 634 RKMSKSLKNGVEPQKVADSLGAEILRLWVASSDYSGEISISEEILKRVTEAYRRIRNTLR 693
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANTSDF+P + + +++++EID+YAI N+ LQ E+L+H+ YEFH +V+KLQ+YCS
Sbjct: 694 FLLANTSDFDPAQHAVPMAELLEIDRYAIANMARLQGEVLAHFETYEFHPVVAKLQMYCS 753
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ +S ARRSAQT++WHI QSLLRL++PILSFT+EEAWS F+
Sbjct: 754 EDLGGFYLDILKDRLYTSGVDSAARRSAQTAVWHITQSLLRLMAPILSFTAEEAWSFFAG 813
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
K + SGETIF+Q++Y LP+V +++ LL K+ +L ++R+ V ++LE++R G IGSSLQ
Sbjct: 814 KEAFEASGETIFSQVYYALPEVADAQGLLAKFAVLHEVRAAVTKQLEEVRIAGSIGSSLQ 873
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK+ +L G++LKF L+TS+ + ++ ++ EE +++ PS ++KC RCWHY
Sbjct: 874 AEVELKVAGEKAALLESLGDDLKFVLITSAARVTRVASVEEEAVVVTPSAHQKCERCWHY 933
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++ LC RC +NLF +
Sbjct: 934 RADVGSHAEHAGLCGRCVSNLFGQ 957
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398834857|ref|ZP_10592257.1| isoleucyl-tRNA synthetase [Herbaspirillum sp. YR522] gi|398219936|gb|EJN06399.1| isoleucyl-tRNA synthetase [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/924 (62%), Positives = 737/924 (79%), Gaps = 1/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQE+K+Y +IR+AS RPKFILHDGPPYANG+IH+GHAVNKILKD
Sbjct: 34 MRGDLAKREPQWVKQWQEQKLYQRIRRASAGRPKFILHDGPPYANGEIHLGHAVNKILKD 93
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK NM GFDAQYVPG+DCHGMPIEIQIEK YGKNL E+Q KARA A E+I Q+
Sbjct: 94 MIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKKYGKNLPVAEVQAKARAYAEEQINLQRR 153
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTM+F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 154 DFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYRGLKPVNWCFDCGSALAEAE 213
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+E +K+ + F L +LP+ GYIVIWT+TPWTIP+NQAL+VHPE
Sbjct: 214 VEYQDKRDPAIDVGFPFAEHDKLATAFGLADLPTRHGYIVIWTTTPWTIPSNQALNVHPE 273
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
FDYALV +N P+LLILA +LV++CL+++G +G +I KG LS I F HPL+ D
Sbjct: 274 FDYALVETSRNGEPMLLILAQDLVQACLQRYGLEGRVIATAKGEALSLIRFHHPLAKADA 333
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSP++LGDY+T DSGTGIVHSAPAYGIEDF+ K MKD D INPVM DG + ST
Sbjct: 334 GYDRLSPVFLGDYVTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDFINPVMGDGRYAST 393
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLF G++IW+ASK IC+ L + LF + MF+HSYMHCWRHKTPIIYR T QWF +MD
Sbjct: 394 LPLFAGLTIWEASKPICAKLDEVGALFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDN 453
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ + SLR++A+ I F+P+WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 454 TPKDGELSLRQTALQGIEATAFYPAWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 513
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G+LHP+T ELIE +A++IE GIE WQ L+ +E LGD+A +Y K+ DTLDVWFDSG TH
Sbjct: 514 TGELHPRTPELIEQVAQRIEQGGIEAWQALEPRELLGDEAEHYLKNRDTLDVWFDSGSTH 573
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK+QL FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 574 QTVLRGSHKQQLQFPADLYLEGSDQHRGWFHSSLLTSSMLNGVAPYKALLTHGFVVDGEG 633
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
+KMSKS N ++PQK+ + GAEILRLW+AS+DYS ++SIS+EIL RV E+YRRIRNTLR
Sbjct: 634 RKMSKSLKNGVEPQKVADSLGAEILRLWIASSDYSGEISISDEILKRVTESYRRIRNTLR 693
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANTSDF+P + + +++++EID+YA+ N+ LQ E+L+H+ YEFH +V+KLQ+YCS
Sbjct: 694 FLLANTSDFDPAKDAVPVAELLEIDRYALANVARLQAEVLAHFEAYEFHPVVAKLQMYCS 753
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ S ARRSAQT++WHI Q+LLRL++PILSFT+EEAW F+
Sbjct: 754 EDLGGFYLDILKDRLYTSGVTSPARRSAQTAVWHITQALLRLMAPILSFTAEEAWRFFAS 813
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
+S +TIF+Q ++ +P+V +++ LL K+ +L ++R+ V ++LE++R G IGSSLQ
Sbjct: 814 PEALAQSDDTIFSQTYHVVPEVADAEALLAKFAVLHEVRAAVTKQLEEVRIAGGIGSSLQ 873
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK+ +L GE+LKF L+TS+ S+ + + +E +++ PS +KC RCWHY
Sbjct: 874 AEVELKVAGDKAALLQSLGEDLKFVLITSAASVTAVDSAEDESVVVTPSTEQKCERCWHY 933
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++P LC RC++NLF +
Sbjct: 934 RADVGSHAEHPGLCGRCYSNLFGQ 957
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134094085|ref|YP_001099160.1| isoleucyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|166229743|sp|A4G3E6.1|SYI_HERAR RecName: Full=Isoleucine--tRNA ligase; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS gi|133737988|emb|CAL61033.1| isoleucine tRNA synthetase (Isoleucine--tRNA ligase) (IleRS) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 1298 bits (3359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/924 (63%), Positives = 731/924 (79%), Gaps = 5/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQ+KKIY +IR+AS RPKFILHDGPPYANGDIHIGHAVNKILKD
Sbjct: 33 MRGDLAKREPQWVKQWQDKKIYEKIREASKGRPKFILHDGPPYANGDIHIGHAVNKILKD 92
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK DG+DA YVPG+DCHGMPIEIQIEKLYGK+L E+ K+RA A E+IE+QK
Sbjct: 93 MIVKTRQFDGYDAPYVPGWDCHGMPIEIQIEKLYGKSLPTAEVLEKSRAYATEQIERQKK 152
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN YKTMDF NEA+E+RA G + +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 153 DFIRLGVLGEWDNPYKTMDFGNEADEIRALGTLLEKGYVYRGLKPVNWCFDCGSALAEAE 212
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+EPEK+ F L LP+ KGY VIWT+TPWTIPANQAL+VHPE
Sbjct: 213 VEYQDKRDPAIDVGFPFAEPEKVAKAFGLAKLPTNKGYAVIWTTTPWTIPANQALNVHPE 272
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
F YALV + +LLILA +LV++ L+++G +G I C G L+ I F HP +++D
Sbjct: 273 FTYALVQTERKGETVLLILAADLVEATLQRYGLEGKTIATCVGEALAMIKFKHPFADVDP 332
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
YNRLSPIY G Y+T DSGTGIVHSAPAYGIEDF+ K +KD +I+ PVM DG + S
Sbjct: 333 GYNRLSPIYPGTYVTADSGTGIVHSAPAYGIEDFISCKSHGLKDDEIVAPVMADGKYASW 392
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLFGG++IW+ASK IC+ L + +LF + MF+HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 393 LPLFGGLTIWEASKPICAKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFAGMDV 452
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+PKN+ +LRE+A+ AI + +FFP WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 453 MPKNQGTTLRETALAAIEQTEFFPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 512
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
SG LHP+T EL+E IA+++E NGIE W LD KE LGDDA Y K+ DTLDVWFDSG TH
Sbjct: 513 SGDLHPRTPELLEQIAQRVEKNGIEAWLKLDPKELLGDDADMYLKNKDTLDVWFDSGTTH 572
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK+QL FPADLYLEGSDQHRGWFHSSLLTS +LN APYKALLTHGFVVD +G
Sbjct: 573 QTVLRGSHKEQLAFPADLYLEGSDQHRGWFHSSLLTSSMLNGHAPYKALLTHGFVVDGEG 632
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKSKGN++ PQK+ + GA+ILRLWVA+TDYS +LSIS+EIL RV E+YRRIRNTLR
Sbjct: 633 KKMSKSKGNVVAPQKVSDSLGADILRLWVAATDYSGELSISDEILKRVTESYRRIRNTLR 692
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLL+NTSDF+ +++ ++DM+EID+YAI + +Q EI++HYR YEFH ++SKLQ YC+
Sbjct: 693 FLLSNTSDFDAGKDLVAVADMLEIDRYAIAQMNAMQNEIVAHYRAYEFHPVISKLQGYCT 752
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ SHARRSAQ++IWH+ QSLLRL++P+LSFT+EEAW IF+
Sbjct: 753 EDLGGFYLDILKDRLYTSGVTSHARRSAQSAIWHLTQSLLRLMAPVLSFTAEEAWVIFAG 812
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
K+ +G+TIFTQ +Y LP+V + LL KY +L+++R+ V ++LE++R G IGSSLQ
Sbjct: 813 KD----AGDTIFTQTYYALPEVADGDALLGKYTLLREVRNDVTKQLEEVRVAGGIGSSLQ 868
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ L+ + F L ++LKF L+TS S+ ++ EE +++ PS Y+KC RCWHY
Sbjct: 869 AEVALQASGDKFAALESLDDDLKFVLITSQASVKKVAGTEEESVLVTPSTYQKCERCWHY 928
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++ LC RC NLF +
Sbjct: 929 RADVGSHAEHEGLCGRCVANLFGK 952
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980423|ref|YP_001352518.1| isoleucyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|166229744|sp|A6SW71.1|SYI_JANMA RecName: Full=Isoleucine--tRNA ligase; AltName: Full=Isoleucyl-tRNA synthetase; Short=IleRS gi|151280500|gb|ABR88910.1| isoleucyl-tRNA synthetase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 1272 bits (3291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/924 (62%), Positives = 723/924 (78%), Gaps = 3/924 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP W+K+WQ++K+Y +IRKAS RPKFILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 30 MRGDLAKREPQWVKQWQDQKVYEKIRKASKGRPKFILHDGPPYANGDIHLGHAVNKILKD 89
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+IVK DGFDA YVPG+DCHGMPIEIQIEK +GKNL E+ +KARA A E++E+QK
Sbjct: 90 MIVKTRQFDGFDAPYVPGWDCHGMPIEIQIEKQFGKNLPTAEVLSKARAYANEQVERQKK 149
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LG+WD YKTMDF NEA+ELRA G + +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 150 DFIRLGVLGQWDKPYKTMDFGNEADELRALGSLLEKGYVYRGLKPVNWCFDCGSALAEAE 209
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F+EPEK+ F L LP+ KGY +IWT+TPWTIPANQAL+VH +
Sbjct: 210 VEYQDKRDPAIDVGFPFAEPEKVAKAFGLAKLPTNKGYAIIWTTTPWTIPANQALNVHGD 269
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
YALV++ +N P LLILA +LV + L++ G G I IC+G L I F HP +++D
Sbjct: 270 LPYALVNVVRNGVPQLLILAADLVGTVLQRCGLTGETIAICEGSALEGIRFKHPFADLDP 329
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
YNR SPIYL Y+ DSGTGIVHSAPAYGIEDF+ K M+D +II PVM DG + S
Sbjct: 330 GYNRESPIYLATYVAADSGTGIVHSAPAYGIEDFISCKSHGMRDDEIIAPVMGDGKYASW 389
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLFGG++IW+ASK IC+ L + +LF + MF+HSYMHCWRHKTPIIYR T QWF MD
Sbjct: 390 LPLFGGLTIWEASKPICAKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFAGMDV 449
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+PKN+ +LRE+A+ AI + +FFPSWGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 450 MPKNQGATLRETALQAIEETEFFPSWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 509
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G LHP+T EL+E IA+++E +GIE W LD KE LG DA Y K+ DTLDVWFDSG TH
Sbjct: 510 TGDLHPRTPELLEQIAQRVEKDGIEAWLTLDPKELLGADADMYLKNKDTLDVWFDSGCTH 569
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK++L FPADLYLEGSDQHRGWFHSSLLTS ++N APYKALLTHGF VD +G
Sbjct: 570 QTVLRGSHKEELAFPADLYLEGSDQHRGWFHSSLLTSSMMNGRAPYKALLTHGFTVDGEG 629
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKS GN + PQK+ + GA+ILRLW+ASTDYS +LSIS+EIL RV E+YRRIRNT+R
Sbjct: 630 KKMSKSLGNTLAPQKISDTLGADILRLWIASTDYSGELSISDEILKRVTESYRRIRNTVR 689
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLL+NTSDF+ +++ ++DM+EID+YA+ + +Q EIL+HY++YEFH +VSKLQ+YCS
Sbjct: 690 FLLSNTSDFDAAKDLVPVADMLEIDRYAVAQMNAMQAEILAHYKVYEFHPVVSKLQMYCS 749
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYT+ SHARRSAQ++IWH+ SLLRL++PILSFT+EEAW++F+
Sbjct: 750 EDLGGFYLDILKDRLYTSGVTSHARRSAQSAIWHLTHSLLRLMAPILSFTAEEAWAVFAS 809
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
+ + + TIFT Y+LP+V + LL KY +L+++R+ V ++LE++R G IGSSLQ
Sbjct: 810 PD--VNTDGTIFTHTFYQLPEVSDGAALLAKYTLLREVRNDVTKQLEEVRVAGGIGSSLQ 867
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ LK + F L ++LKF L+TS + Q+ + EE +++ PS Y+KC RCWHY
Sbjct: 868 AEVELKASGDKFAALASLDDDLKFVLITSQAGVSQVASAEEESVVVTPSTYQKCERCWHY 927
Query: 2467 QADVGERDDYPDLCNRCFNNLFAE 2490
+ADVG ++ LC RC NLF +
Sbjct: 928 RADVGSHAEHEGLCGRCVANLFGK 951
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329903782|ref|ZP_08273614.1| Isoleucyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327548213|gb|EGF32915.1| Isoleucyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/923 (61%), Positives = 728/923 (78%), Gaps = 1/923 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP WI WQEKK+Y ++RKA+ RP F+LHDGPPYANGDIHIGHAVNK+LKD
Sbjct: 32 MRGDLAKREPQWITSWQEKKLYERVRKAAKGRPLFVLHDGPPYANGDIHIGHAVNKVLKD 91
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
I+VK N+ GFDA YVPG+DCHGMPIEIQIEK YGK+L E+ K+RA A +IE+QK+
Sbjct: 92 IVVKSRNLAGFDAPYVPGWDCHGMPIEIQIEKQYGKSLPTAEVLEKSRAYATVQIERQKL 151
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF+RLG+LGEWDN Y TM+F NEA+ELRA G I +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 152 DFIRLGVLGEWDNPYTTMNFGNEADELRALGTILQKGYVYRGLKPVNWCFDCGSALAEAE 211
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY++K D +I VGF+F++PEKI + F L +LP+ +GY VIWT+TPWTIPANQA++VHPE
Sbjct: 212 VEYQEKRDPAIDVGFAFAQPEKIAAAFGLASLPTERGYCVIWTTTPWTIPANQAMNVHPE 271
Query: 1808 FDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
FDYALV +N PLLLILA +LV++CLK++G +G++I CKG LS I F HPL++ D
Sbjct: 272 FDYALVQTARNGEPLLLILALDLVEACLKRYGLEGSVIATCKGAALSLIAFKHPLADTDP 331
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSPIYL +Y+ +D+GTGIVHS+PAYG++DFL + MKD D++NPVM DG + S
Sbjct: 332 GYDRLSPIYLAEYVALDTGTGIVHSSPAYGVDDFLSCRAHGMKDDDMLNPVMGDGRYASW 391
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LP FGGM+IW+ASK ICS L ++ +LF + MFEHSYMHCWRHKTPIIYR T QWF MD+
Sbjct: 392 LPFFGGMTIWEASKPICSKLDEAGSLFKLVMFEHSYMHCWRHKTPIIYRATSQWFAGMDR 451
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ +LRE+A+ I+ F+P WGK RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 452 TPKDGGPTLRETALAGIDATTFYPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 511
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G LHP+T EL+E IA+++E+ GI+ W ++ K+ LGD+A Y K+ DTLDVWFDSG TH
Sbjct: 512 TGDLHPRTPELLEQIARRVEVAGIDAWLTIEPKDLLGDEADQYIKNKDTLDVWFDSGTTH 571
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSH + FPADLYLEGSDQHRGWFHSSLLTS +LN APYK LLTHGFVVD +G
Sbjct: 572 QTVLRGSHAQSSHFPADLYLEGSDQHRGWFHSSLLTSSMLNGCAPYKTLLTHGFVVDGEG 631
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKS GN++ PQK+ + GA+ILRLWV STDYS +LSIS+EIL RV E+YRRIRNTLR
Sbjct: 632 KKMSKSVGNVVAPQKVADSLGADILRLWVGSTDYSGELSISDEILKRVTESYRRIRNTLR 691
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANTSDFN + + ++D++E+D+YA+ IT LQ EI++HY ++EFH + SKLQ+YCS
Sbjct: 692 FLLANTSDFNAATDAVPVADLLEVDRYALARITQLQAEIMAHYEVHEFHPVTSKLQMYCS 751
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLD+LKDRLYT S ARRSAQT+IWHI Q+LLRL++PILSFT+EEAW+IF+D
Sbjct: 752 EDLGGFYLDVLKDRLYTAGVGSVARRSAQTAIWHITQTLLRLMAPILSFTAEEAWAIFAD 811
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
+ S ETIFTQ + LP V ++ LL +Y L+++R++V ++LE++R G IGSSLQ
Sbjct: 812 PAAFAASDETIFTQTGWVLPAVADADALLQRYAALREVRTEVSKQLEEVRIAGSIGSSLQ 871
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ L+ + +++L ++L+F L+TS ++ Q+ ++E I++ PS KC RCWHY
Sbjct: 872 AEVELRASGAKYDLLASLDDDLRFVLITSQATVSQVAAEADESIVVTPSAAPKCERCWHY 931
Query: 2467 QADVGERDDYPDLCNRCFNNLFA 2489
+ADVG + +LC RC NLF
Sbjct: 932 RADVGSDAAHAELCGRCVANLFG 954
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427401000|ref|ZP_18892238.1| isoleucyl-tRNA synthetase [Massilia timonae CCUG 45783] gi|425719896|gb|EKU82823.1| isoleucyl-tRNA synthetase [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 1236 bits (3198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/923 (59%), Positives = 702/923 (76%), Gaps = 1/923 (0%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREPGW+K+WQ+KKIY ++RKA+ RP FILHDGPPYANGDIH+GHAVNKILKD
Sbjct: 35 MRGDLAKREPGWVKQWQDKKIYERVRKAAAGRPTFILHDGPPYANGDIHLGHAVNKILKD 94
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687
+++K + GFDA YVPG+DCHGMPIEIQIEKLYGKNL E+ KARA A E+I++Q+
Sbjct: 95 MVIKSRTIAGFDAPYVPGWDCHGMPIEIQIEKLYGKNLPTAEVLQKARAYALEQIDRQRA 154
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
F+RLG+LGEWDN Y TM + NEA+ELRA G + +KGYVY GLKPVNWCFDC SALAEAE
Sbjct: 155 GFIRLGVLGEWDNPYMTMAYSNEADELRALGTLLEKGYVYRGLKPVNWCFDCGSALAEAE 214
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
+EY+ K D +I VGF F E +KI + F L LP +G+IVIWT+TPWTIP+NQAL+V PE
Sbjct: 215 VEYQDKRDPAIDVGFPFHEHDKIAAAFGLDTLPVDQGFIVIWTTTPWTIPSNQALNVGPE 274
Query: 1808 FDYALVHIKND-PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDI 1866
Y+LV ++ D P LLIL LV+S L ++ +G II G KL I F HPL D
Sbjct: 275 VGYSLVRVERDGQPQLLILGSELVESVLARYKLEGTIIATTVGAKLEGIRFKHPLHAQDP 334
Query: 1867 NYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIST 1926
Y+RLSP+YL DY+TVDSGTG+VHSAP+YG+EDF K MKD +++ PVM DG F S+
Sbjct: 335 FYDRLSPVYLADYVTVDSGTGVVHSAPSYGLEDFQSCKAHGMKDDEMLKPVMGDGRFASS 394
Query: 1927 LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 1986
LPLFGGM+IW+ASK IC L ++ LF ++MF+HSYMHCWRHKTPI+YR T QWF MD
Sbjct: 395 LPLFGGMTIWEASKPICGALTEAGALFELKMFDHSYMHCWRHKTPIVYRATNQWFAGMDI 454
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
PK+ +LRE+A+ I K +FFP WG+ RL MI NRPDWT+SRQR WGVP+AFF+HK+
Sbjct: 455 TPKDGGPTLRETALAGIEKTQFFPDWGQARLHGMIENRPDWTLSRQRQWGVPMAFFVHKE 514
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
+G LHP+T EL+E +AK IE GI+ W NLD LG+DA Y+K+ DTLDVWFDSG TH
Sbjct: 515 TGALHPRTPELLEQVAKLIEAGGIDAWHNLDPATLLGEDAATYEKNKDTLDVWFDSGSTH 574
Query: 2107 QTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
QTV+RGSHK Q FPADLYLEGSDQHRGWFHSSLLTS +LN + PYKALLTHGF VD G
Sbjct: 575 QTVLRGSHKAQSSFPADLYLEGSDQHRGWFHSSLLTSSMLNGTPPYKALLTHGFTVDENG 634
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLR 2226
KKMSKS GN + PQK+ + GA+ILRLWVASTDY+ +LSI EIL RV E+YRRIRNTLR
Sbjct: 635 KKMSKSLGNTMAPQKISDTLGADILRLWVASTDYTGELSIGEEILKRVTESYRRIRNTLR 694
Query: 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 2286
FLLANTSDF+P ++ + + +++EID+YAI ++ LQ ++ +H+ YEFH +VS+LQ YCS
Sbjct: 695 FLLANTSDFDPALHAVPMPELLEIDRYAIASMAQLQNDVAAHFERYEFHPVVSRLQNYCS 754
Query: 2287 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346
EDLG FYLDILKDRLYTT S ARRSAQT++WHI SLLR+++PILSFT+EEAW F+
Sbjct: 755 EDLGGFYLDILKDRLYTTGVASTARRSAQTALWHIAHSLLRVMAPILSFTAEEAWEKFAG 814
Query: 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQ 2406
+ S ETIFTQ + P + +++ LL KY +L+++R+ V ++LE++R++G IGSSLQ
Sbjct: 815 AEAFAASDETIFTQTLWTFPALPDAEALLAKYALLRQVRTDVTKQLEEVRASGAIGSSLQ 874
Query: 2407 AEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYKKCNRCWHY 2466
AE+ +K + L ++LKF +TS ++ ++ ++E + + PS ++KC RCWHY
Sbjct: 875 AELAIKAAGEKYRALASLDDDLKFVFITSQATVSEVAAEADEAVEVAPSTFEKCERCWHY 934
Query: 2467 QADVGERDDYPDLCNRCFNNLFA 2489
+ DVG +P LC RC +NLF
Sbjct: 935 RRDVGHDHAHPTLCGRCTSNLFG 957
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2492 | ||||||
| TIGR_CMR|SO_3532 | 940 | SO_3532 "isoleucyl-tRNA synthe | 0.359 | 0.954 | 0.426 | 7.6e-215 | |
| UNIPROTKB|Q9KU47 | 949 | ileS "Isoleucine--tRNA ligase" | 0.363 | 0.955 | 0.429 | 4.2e-214 | |
| TIGR_CMR|VC_0682 | 949 | VC_0682 "isoleucyl-tRNA synthe | 0.363 | 0.955 | 0.429 | 4.2e-214 | |
| TIGR_CMR|CBU_0396 | 936 | CBU_0396 "isoleucyl-tRNA synth | 0.360 | 0.960 | 0.427 | 6e-206 | |
| UNIPROTKB|P00956 | 938 | ileS "isoleucyl-tRNA synthetas | 0.308 | 0.818 | 0.464 | 1.3e-201 | |
| TIGR_CMR|BA_4034 | 921 | BA_4034 "isoleucyl-tRNA synthe | 0.274 | 0.742 | 0.335 | 3.4e-168 | |
| TAIR|locus:2154349 | 1093 | OVA2 "ovule abortion 2" [Arabi | 0.324 | 0.739 | 0.357 | 2.5e-148 | |
| TIGR_CMR|SPO_3136 | 970 | SPO_3136 "isoleucyl-tRNA synth | 0.215 | 0.552 | 0.340 | 8.6e-147 | |
| TIGR_CMR|CJE_1204 | 917 | CJE_1204 "isoleucyl-tRNA synth | 0.349 | 0.949 | 0.369 | 1.3e-142 | |
| DICTYBASE|DDB_G0293030 | 1034 | mileS "isoleucyl-tRNA syntheta | 0.336 | 0.811 | 0.359 | 8e-138 |
| TIGR_CMR|SO_3532 SO_3532 "isoleucyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 2076 (735.8 bits), Expect = 7.6e-215, P = 7.6e-215
Identities = 400/937 (42%), Positives = 593/937 (63%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G L+ REP +++W + +Y QIR + I R FILHDGPPYANG IHIGH+VNKILKD
Sbjct: 17 MRGNLANREPEMLERWTKDGLYQQIRDSRIGRTPFILHDGPPYANGSIHIGHSVNKILKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQ 1684
IIVK M GFDA YVPG+DCHG+PIE+++E+ GK +S E + + R A E+++
Sbjct: 77 IIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQKISAAEFREECRKYAAEQVDG 136
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
Q+ DF+RLG+LG+W N Y TMDF EAN +R+ + + G+++ G+KPV+WC DC SALA
Sbjct: 137 QREDFIRLGVLGDWQNPYLTMDFATEANIVRSLSKVIENGHLHKGVKPVHWCTDCGSALA 196
Query: 1745 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804
EAE+EY+ K +I V F+ + + + F + + S +VIWT+TPWT+PAN+AL +
Sbjct: 197 EAEVEYEDKTSPAIDVAFTAVDSKAVAVKFGVSDY-SHSVSMVIWTTTPWTLPANRALSI 255
Query: 1805 HPEFDYALVH-IKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXX-XXLSKINFFHPLS 1862
PE DY+LV +K+ +ILA LV++C+ L + F HP
Sbjct: 256 SPELDYSLVEFVKDGVTHAVILADVLVEACMTRYGAESHSVLAKIKGAALELVRFKHPFL 315
Query: 1863 NIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGN 1922
D+ P LGD++T D+GTG+VH+AP +G +DF++ +K + ++ NPV D+G
Sbjct: 316 AFDV------PAILGDHVTTDAGTGVVHTAPGHGQDDFVVGQKYGL---EVANPVGDNGV 366
Query: 1923 FISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 1982
+ F G ++KA+ + + LK+ L + + HSY HCWRHKTPII+R T QWFI
Sbjct: 367 YKPDTEFFAGQHVFKANDNVVALLKEKGALLHHVAYRHSYPHCWRHKTPIIFRATPQWFI 426
Query: 1983 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFF 2042
+MD +LR+ A++ I +I++ P WG+ R++ M+ NRPDW ISRQR WGVPI F
Sbjct: 427 SMDN------HNLRKQALSEIEQIQWIPDWGQSRIEKMVENRPDWCISRQRTWGVPITLF 480
Query: 2043 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS 2102
+H+++ +LHP ++ L+ +A +IE GI+ W +LD E LG++A Y+K DTLDVW+DS
Sbjct: 481 VHRETEELHPDSVSLMARVANRIEQEGIQAWWDLDAAELLGEEAEQYRKVTDTLDVWYDS 540
Query: 2103 GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
G T +V+ + + DLYLEGSDQHRGWF SSL+ S + APYK +LTHGF V
Sbjct: 541 GSTFASVV-AARPEFHGHGVDLYLEGSDQHRGWFMSSLMISTAMTGKAPYKQVLTHGFTV 599
Query: 2163 DXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 2222
D N+I PQ++ N GA+ILRLWVA+TDYS ++++S+EILNR + YRRIR
Sbjct: 600 DGKGRKMSKSIGNVIAPQQVTNKLGADILRLWVAATDYSGEMTVSDEILNRSADAYRRIR 659
Query: 2223 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282
NT RFLLAN + F+P +++ + DMV +D++A+ LQ+EI+ Y Y FH++ KL
Sbjct: 660 NTARFLLANLNGFDPKNDLVAVEDMVALDRWAVRRAAALQQEIIEAYEQYNFHIVTQKLM 719
Query: 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 2342
+CS +LGSFYLDI+KDR YT K+ HARRS Q++++HI ++++R I+P+LSFT++E W
Sbjct: 720 QFCSIELGSFYLDIIKDRQYTAKQEGHARRSCQSALFHIAEAMVRWIAPVLSFTADEVWQ 779
Query: 2343 IF-SDKNFYIESGETIFTQLHYK-LPKV-YNSXXXXXXXXXXXXXRSKVMQKLEKIRSTG 2399
+ ++ Y+ FTQ Y+ L + ++ R++V + +E+ R
Sbjct: 780 LLPGQRDAYV------FTQEWYQGLQSITLDTDLSDAYWENLLTVRNEVNKVIEQARRDK 833
Query: 2400 IIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECI--------- 2450
+G SL+AE+ L + E L G+EL+F LLTS + + + + + +
Sbjct: 834 RVGGSLEAEVTLFADATLTEQLTHIGDELRFVLLTSEAKVLPLVDATSDAVETELASLKL 893
Query: 2451 IIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
++ + +KC RCWH++ +VG + +P LC+RC N+
Sbjct: 894 VVNATTAEKCERCWHHREEVGTIEAHPTLCHRCVTNI 930
|
|
| UNIPROTKB|Q9KU47 ileS "Isoleucine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 2069 (733.4 bits), Expect = 4.2e-214, P = 4.2e-214
Identities = 405/942 (42%), Positives = 581/942 (61%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP +++W ++ +Y IR+A + F+LHDGPPYANGDIHIGHA+NKILKD
Sbjct: 17 MRGDLAKREPEMLQRWYQEDLYGAIRQAKKGKKSFVLHDGPPYANGDIHIGHALNKILKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQ 1684
+I+K + GFDA Y+PG+DCHG+PIE+ +EK GK ++ E + K R A ++E
Sbjct: 77 VIIKSKTLSGFDAPYIPGWDCHGLPIELMVEKKVGKPGQKVTAAEFREKCREYAAGQVEG 136
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
QK F RLGILGEWD Y+TMDF+ EAN +RA G I G++ G KPV+WC DC SALA
Sbjct: 137 QKESFKRLGILGEWDKPYRTMDFVTEANIIRALGKIADNGHLLKGFKPVHWCTDCGSALA 196
Query: 1745 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKG--YIVIWTSTPWTIPANQAL 1802
EAE+EYK K SI V F ++ + + F L GKG IVIWT+TPWT+PAN+A+
Sbjct: 197 EAEVEYKNKVSPSIDVRFKAADEAAVLAKFGLAAGHEGKGDVSIVIWTTTPWTLPANRAV 256
Query: 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXX-LSKINFFHPL 1861
+ + +Y L+ ++ + P +I+A L KS + L + F HP
Sbjct: 257 CLRADLEYVLIQVEGEQPERIIVASELAKSVMDRAGIEHFHNLGFATGADLELVQFQHPF 316
Query: 1862 SNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 1921
Y+ P LGD++T DSGTG+VH+AP +G EDF + ++ + ++ NPV +G
Sbjct: 317 ------YSFTVPAILGDHVTTDSGTGVVHTAPGHGQEDFAVGQQYGL---EVANPVGSNG 367
Query: 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWF 1981
++ LF G ++KA+ + LK+ L + +EHSY HCWRHKTPII+R T QWF
Sbjct: 368 VYLPDTELFAGQHVFKANDSVLEVLKEKGALLHHHAYEHSYPHCWRHKTPIIFRATPQWF 427
Query: 1982 INMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF 2041
++M E+ LRE A+TAI + + P WG+ R++ M+ RP+W ISRQR WGVPIA
Sbjct: 428 VSM------EQAGLREQALTAIKGVHWMPDWGQSRIEGMVAGRPEWCISRQRTWGVPIAL 481
Query: 2042 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWF 2100
F+HK++ +LHP + +LIE +A+ +E GI+ W +LD E LG +DA NY+K DTLDVWF
Sbjct: 482 FVHKETAELHPNSADLIEKVAQLVEQKGIQAWWDLDTAELLGAEDAANYEKVLDTLDVWF 541
Query: 2101 DSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGF 2160
DSG+TH V+ + AD+YLEGSDQHRGWF SSL++S+ + APYK +LTHGF
Sbjct: 542 DSGVTHSAVVDARQEFNGA-EADMYLEGSDQHRGWFQSSLISSVAMKGKAPYKEVLTHGF 600
Query: 2161 VVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRR 2220
VVD N++ PQ + N GA+ILRLWVASTDY+ ++++S+EIL R + YRR
Sbjct: 601 VVDGQGRKMSKSIGNVVAPQDVTNKLGADILRLWVASTDYTGEVAVSDEILKRSADAYRR 660
Query: 2221 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280
IRNT RF LAN + FNP +II + DMV +D++A+ Q+EI+ Y+ Y H +V +
Sbjct: 661 IRNTARFFLANLNGFNPTTDIIPVEDMVALDRWAVGRALAAQQEIIQAYQDYNLHAVVQR 720
Query: 2281 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340
L +CS ++GSFYLD++KDR YT K+ HA+RS QT+++ I ++L+R ++PI+SFT++E
Sbjct: 721 LMNFCSIEMGSFYLDVIKDRQYTAKRGGHAQRSCQTALFFIVEALVRWMAPIMSFTADEI 780
Query: 2341 WSIFSDKNFYIESGET-IFTQLHYK--LPKVYNSXXXXXXXXXXXXXRSKVMQKLEKIRS 2397
W+ + + + +FT + R V + LE R+
Sbjct: 781 WNAMPAQQADGSARDKFVFTTEWFDGLFGLAEGEELNNAFWNDIQKVRGSVNKLLENARN 840
Query: 2398 TGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEEC-------- 2449
+IG SLQAE++L + L + G+EL+F LLTS + + SE
Sbjct: 841 EKLIGGSLQAELVLFADDSLASKLAKLGDELRFVLLTSKAVVKPLAEKSEAAQATDIDGL 900
Query: 2450 -IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFAE 2490
+ + + +KC+RCWH+ DVG + +C RC +N+ E
Sbjct: 901 FVQVNKTEAEKCDRCWHHTPDVGTIAGHTTICGRCVSNVEGE 942
|
|
| TIGR_CMR|VC_0682 VC_0682 "isoleucyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 2069 (733.4 bits), Expect = 4.2e-214, P = 4.2e-214
Identities = 405/942 (42%), Positives = 581/942 (61%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREP +++W ++ +Y IR+A + F+LHDGPPYANGDIHIGHA+NKILKD
Sbjct: 17 MRGDLAKREPEMLQRWYQEDLYGAIRQAKKGKKSFVLHDGPPYANGDIHIGHALNKILKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQ 1684
+I+K + GFDA Y+PG+DCHG+PIE+ +EK GK ++ E + K R A ++E
Sbjct: 77 VIIKSKTLSGFDAPYIPGWDCHGLPIELMVEKKVGKPGQKVTAAEFREKCREYAAGQVEG 136
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
QK F RLGILGEWD Y+TMDF+ EAN +RA G I G++ G KPV+WC DC SALA
Sbjct: 137 QKESFKRLGILGEWDKPYRTMDFVTEANIIRALGKIADNGHLLKGFKPVHWCTDCGSALA 196
Query: 1745 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKG--YIVIWTSTPWTIPANQAL 1802
EAE+EYK K SI V F ++ + + F L GKG IVIWT+TPWT+PAN+A+
Sbjct: 197 EAEVEYKNKVSPSIDVRFKAADEAAVLAKFGLAAGHEGKGDVSIVIWTTTPWTLPANRAV 256
Query: 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXX-LSKINFFHPL 1861
+ + +Y L+ ++ + P +I+A L KS + L + F HP
Sbjct: 257 CLRADLEYVLIQVEGEQPERIIVASELAKSVMDRAGIEHFHNLGFATGADLELVQFQHPF 316
Query: 1862 SNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 1921
Y+ P LGD++T DSGTG+VH+AP +G EDF + ++ + ++ NPV +G
Sbjct: 317 ------YSFTVPAILGDHVTTDSGTGVVHTAPGHGQEDFAVGQQYGL---EVANPVGSNG 367
Query: 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWF 1981
++ LF G ++KA+ + LK+ L + +EHSY HCWRHKTPII+R T QWF
Sbjct: 368 VYLPDTELFAGQHVFKANDSVLEVLKEKGALLHHHAYEHSYPHCWRHKTPIIFRATPQWF 427
Query: 1982 INMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF 2041
++M E+ LRE A+TAI + + P WG+ R++ M+ RP+W ISRQR WGVPIA
Sbjct: 428 VSM------EQAGLREQALTAIKGVHWMPDWGQSRIEGMVAGRPEWCISRQRTWGVPIAL 481
Query: 2042 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWF 2100
F+HK++ +LHP + +LIE +A+ +E GI+ W +LD E LG +DA NY+K DTLDVWF
Sbjct: 482 FVHKETAELHPNSADLIEKVAQLVEQKGIQAWWDLDTAELLGAEDAANYEKVLDTLDVWF 541
Query: 2101 DSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGF 2160
DSG+TH V+ + AD+YLEGSDQHRGWF SSL++S+ + APYK +LTHGF
Sbjct: 542 DSGVTHSAVVDARQEFNGA-EADMYLEGSDQHRGWFQSSLISSVAMKGKAPYKEVLTHGF 600
Query: 2161 VVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRR 2220
VVD N++ PQ + N GA+ILRLWVASTDY+ ++++S+EIL R + YRR
Sbjct: 601 VVDGQGRKMSKSIGNVVAPQDVTNKLGADILRLWVASTDYTGEVAVSDEILKRSADAYRR 660
Query: 2221 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280
IRNT RF LAN + FNP +II + DMV +D++A+ Q+EI+ Y+ Y H +V +
Sbjct: 661 IRNTARFFLANLNGFNPTTDIIPVEDMVALDRWAVGRALAAQQEIIQAYQDYNLHAVVQR 720
Query: 2281 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340
L +CS ++GSFYLD++KDR YT K+ HA+RS QT+++ I ++L+R ++PI+SFT++E
Sbjct: 721 LMNFCSIEMGSFYLDVIKDRQYTAKRGGHAQRSCQTALFFIVEALVRWMAPIMSFTADEI 780
Query: 2341 WSIFSDKNFYIESGET-IFTQLHYK--LPKVYNSXXXXXXXXXXXXXRSKVMQKLEKIRS 2397
W+ + + + +FT + R V + LE R+
Sbjct: 781 WNAMPAQQADGSARDKFVFTTEWFDGLFGLAEGEELNNAFWNDIQKVRGSVNKLLENARN 840
Query: 2398 TGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEEC-------- 2449
+IG SLQAE++L + L + G+EL+F LLTS + + SE
Sbjct: 841 EKLIGGSLQAELVLFADDSLASKLAKLGDELRFVLLTSKAVVKPLAEKSEAAQATDIDGL 900
Query: 2450 -IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFAE 2490
+ + + +KC+RCWH+ DVG + +C RC +N+ E
Sbjct: 901 FVQVNKTEAEKCDRCWHHTPDVGTIAGHTTICGRCVSNVEGE 942
|
|
| TIGR_CMR|CBU_0396 CBU_0396 "isoleucyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1992 (706.3 bits), Expect = 6.0e-206, P = 6.0e-206
Identities = 401/937 (42%), Positives = 574/937 (61%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ L +REP + +WQ +Y +IRK +PKFILHDGPPYANG H+G A NK LKD
Sbjct: 17 MRANLPEREPQTLARWQTLDLYRKIRKDREGQPKFILHDGPPYANGRAHLGTAFNKTLKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKN-LSPIEIQNKARALAYEKIEQQK 1686
I+VK + GFDA +VPG+DCHG+PIE+ +EK GK+ LS + R A+ +IE Q+
Sbjct: 77 IVVKSKTLSGFDAPFVPGWDCHGLPIELNVEKKLGKDKLSANAFRQACRDYAFSQIELQR 136
Query: 1687 MDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEA 1746
DF RLG+LG+W + Y TMDF EA+ +RA I G++ G KPV+WC C SALAEA
Sbjct: 137 DDFQRLGVLGDWQHPYLTMDFGYEADTVRALAKIVANGHLLRGQKPVHWCAACGSALAEA 196
Query: 1747 EIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHP 1806
E+EY+ K ++ VGF + E ++ F +KN + + + IWT+TPWT+PAN+A+ VHP
Sbjct: 197 EVEYRDKASPAVDVGFEAVDAEAVRQRFGVKNATT-RVLVPIWTTTPWTLPANEAVSVHP 255
Query: 1807 EFDYALVHIK-NDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNID 1865
E YALV + + P+ LILA +LV S + L +
Sbjct: 256 ELHYALVKSELQNQPVYLILAKDLVDSAMQRYGVDDYEVHGNLKGDA--------LEGMQ 307
Query: 1866 INY---NRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGN 1922
+ + +R+ PI LG+++T ++GTG VH+APA+G+ED+ + +K N+ I NPV G
Sbjct: 308 LQHPFLDRIVPIILGEHVTTEAGTGNVHTAPAHGLEDYFVAEKYNLP---INNPVDARGR 364
Query: 1923 FISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 1982
FI L GG ++KA++ I L S L + E +HSY HCWRHKTP+I+R T QWFI
Sbjct: 365 FIPDTFLVGGQPVFKANEPIIVLLADSGHLLHSETIQHSYPHCWRHKTPLIFRATPQWFI 424
Query: 1983 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFF 2042
M+K LRE A+ I K+ + P+WG+ R+ M+ +RPDW ISRQR WG+PI F
Sbjct: 425 GMNK------NGLRERALAEIEKVTWLPAWGEARIGKMVADRPDWCISRQRLWGIPIPLF 478
Query: 2043 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS 2102
IHKKSG+LHPK+ L+E +A+ IE ++ W +LD K LGDDA +Y+K D LDVWFDS
Sbjct: 479 IHKKSGELHPKSPALMEKVAQLIEKESVDAWFDLDPKVLLGDDADHYEKVTDVLDVWFDS 538
Query: 2103 GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
G+TH V+ +++L PAD+YLEGSDQHRGWF SSLLTS+ + APYK++LT+GFVV
Sbjct: 539 GVTHFCVLE--KRRELKVPADIYLEGSDQHRGWFQSSLLTSLAIRDKAPYKSVLTYGFVV 596
Query: 2163 DXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 2222
D N+I P + GA++LRLW AS DY+ ++++S+EIL R + YRRIR
Sbjct: 597 DSQGRKMSKSLGNVILPADVVKNLGADVLRLWAASMDYTVEVNVSDEILKRASDAYRRIR 656
Query: 2223 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282
NT RFLL+N DF+P + + + +V +D++AI LQ++I++ Y Y F I +
Sbjct: 657 NTARFLLSNLYDFDPKKDKVAVDQLVALDRWAIFTTQKLQEKIITAYDRYRFPAIYQAIH 716
Query: 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 2342
+C+ ++GSFYLDI+KDRLYT+K++ RRSAQT++++I ++ +R I+PI+SFT++E W
Sbjct: 717 NFCTVEMGSFYLDIIKDRLYTSKESGLPRRSAQTALYYIAEAFVRWIAPIISFTADEIWQ 776
Query: 2343 IFSDKNFYIESGETIFTQLHYKLPKVYNSXXXXXXXXXXXXXRSKVMQKLEKIRSTGIIG 2402
TQ P S R +V + LE R+ G IG
Sbjct: 777 FMPGDR----EPSVFLTQWFSDFPNAALSGEEEQRWQLLLQIRDEVNKALETYRNEGKIG 832
Query: 2403 SSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEEC---------IIIK 2453
S+L AE++L ++ ++ GEEL+F L+TS S+ S+ + I
Sbjct: 833 SALTAEVVLYADERLNAVIATLGEELRFVLITSEASVLPFNEKSKAAFDTALPGLALEIN 892
Query: 2454 PSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFAE 2490
S ++KC RCW ++ VG+ ++ DLC+RC +N F +
Sbjct: 893 VSEFEKCARCWQRRSSVGQIKEHADLCDRCVSNAFED 929
|
|
| UNIPROTKB|P00956 ileS "isoleucyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1951 (691.8 bits), Expect = 1.3e-201, P = 1.3e-201
Identities = 369/794 (46%), Positives = 533/794 (67%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
+ G+L+KREPG + +W + +Y IR A + FILHDGPPYANG IHIGH+VNKILKD
Sbjct: 17 MRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQ 1684
IIVK + G+D+ YVPG+DCHG+PIE+++E+ YGK + E + K R A +++
Sbjct: 77 IIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDG 136
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
Q+ DF+RLG+LG+W + Y TMDF EAN +RA G I G+++ G KPV+WC DC+SALA
Sbjct: 137 QRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALA 196
Query: 1745 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804
EAE+EY K SI V F + + +K+ F + N+ +G +VIWT+TPWT+PAN+A+ +
Sbjct: 197 EAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNV-NGPISLVIWTTTPWTLPANRAISI 255
Query: 1805 HPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXX-LSKINFFHPLSN 1863
P+FDYALV I +ILA +LV+S + L + F HP
Sbjct: 256 APDFDYALVQIDGQA---VILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMG 312
Query: 1864 IDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNF 1923
D+ P LGD++T+D+GTG VH+AP +G +D++I +K ++ + NPV DG +
Sbjct: 313 FDV------PAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETA---NPVGPDGTY 363
Query: 1924 I-STLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 1982
+ T P G++++KA+ ++ + L++ L ++E +HSY CWRHKTPII+R T QWF+
Sbjct: 364 LPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFV 423
Query: 1983 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFF 2042
+MD+ K LR ++ I +++ P WG+ R++SM+ NRPDW ISRQR WGVP++ F
Sbjct: 424 SMDQ------KGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLF 477
Query: 2043 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS 2102
+HK + +LHP+TLEL+E +AK++E++GI+ W +LD KE LGD+A Y K DTLDVWFDS
Sbjct: 478 VHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDS 537
Query: 2103 GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVV 2162
G TH +V+ + AD+YLEGSDQHRGWF SSL+ S + APY+ +LTHGF V
Sbjct: 538 GSTHSSVV-DVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTV 596
Query: 2163 DXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 2222
D N + PQ + N GA+ILRLWVASTDY+ ++++S+EIL R ++YRRIR
Sbjct: 597 DGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIR 656
Query: 2223 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282
NT RFLLAN + F+P +++K +MV +D++A+ Q++IL Y Y+FH +V +L
Sbjct: 657 NTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLM 716
Query: 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 2342
+CS ++GSFYLDI+KDR YT K +S ARRS QT+++HI ++L+R ++PILSFT++E W
Sbjct: 717 RFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWG 776
Query: 2343 IF-SDKNFYIESGE 2355
++ Y+ +GE
Sbjct: 777 YLPGEREKYVFTGE 790
|
|
| TIGR_CMR|BA_4034 BA_4034 "isoleucyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 3.4e-168, Sum P(2) = 3.4e-168
Identities = 244/727 (33%), Positives = 377/727 (51%)
Query: 622 SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVK 681
S+ + KN+ G +IWT+TPWT+PAN + VHPE +YA+V + ++ ++ F V
Sbjct: 213 SVKDGKNVLEGDEKYIIWTTTPWTLPANLGISVHPELEYAIVKVNDEKYIIASELFETVA 272
Query: 682 SCLXXXXXXXXXXXXXXXXXLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHS 741
L + HP Y+R S + LGD++T D+GTG VH+
Sbjct: 273 KTLEWENAEVVKTVKGSELEYTVAK--HPF------YDRDSLVMLGDHVTTDAGTGCVHT 324
Query: 742 APAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKT 801
AP +G +DF++ KK + +++ PV D G P F G+ KA+K I L++
Sbjct: 325 APGHGEDDFIVGKKYGL---EVLCPVDDKGVLTEEAPGFEGLFYDKANKPITEKLEEVGA 381
Query: 802 LFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPS 861
L + HSY H WR K PII+R T QWF +++ + R+ + A+ + K+ P+
Sbjct: 382 LLKLTFITHSYPHDWRTKKPIIFRATAQWFASIE--------AFRKELLEAVAETKWVPA 433
Query: 862 WGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 921
WG+ RL +M+ +R DW ISRQR WGVPI F + + T E I +A +G
Sbjct: 434 WGETRLHNMVRDRGDWCISRQRAWGVPIPVFYAENGDPII--TDETINHVADLFREHGSN 491
Query: 922 IWQNLDIKEFL-------GDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADL 974
+W + K+ L G ++K D +DVWFDSG +HQ V+ + L PADL
Sbjct: 492 VWFEREAKDLLPEGFTHPGSPNGEFRKETDIMDVWFDSGSSHQAVLE--ERDDLQRPADL 549
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXXNIIKPQKLCN 1034
YLEGSDQ+RGWF+SSL T++ + APYK +L+HGFV+D NI+ P+K+ +
Sbjct: 550 YLEGSDQYRGWFNSSLSTAVAVTGKAPYKGVLSHGFVLDGEGRKMSKSIGNIVVPKKIMD 609
Query: 1035 LFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKI 1094
G +ILRLWV+S DY D+ IS++IL +V E YR+IRNT RFLL N DF P+ N + +
Sbjct: 610 QLGGDILRLWVSSVDYQSDVRISDDILKQVAEVYRKIRNTFRFLLGNLDDFKPSENTVAV 669
Query: 1095 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTT 1154
+++ E+D+Y ++ + +L ++ Y Y+F + + +C+ DL SFYLD KD LY
Sbjct: 670 AELREVDRYMLVKLNDLITKVKEAYETYDFAAVYHAIHNFCTIDLSSFYLDFAKDILYIE 729
Query: 1155 KKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYK 1214
N RR+ QT ++ + +L +L++PIL T++E W + T +
Sbjct: 730 GANHEDRRAIQTVLYDVLVALTKLVTPILPHTADEVWPYIPG----VTEESVQLTDMPEA 785
Query: 1215 LPKVYNSXXXXXXXXXXXXXRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEF 1274
+ ++ ++ R V++ LE R+ +IG SL A I L +L
Sbjct: 786 V-QLDDAEALKTKWDAFMTLRDDVLKALEVARNEKVIGKSLNASITLYPTAEMKAMLESI 844
Query: 1275 GEELKFFLLTSSVSL--------FQIKNLSEECIIIKPSIYKKCNRCWHYQADVGERDDY 1326
E+LK + S L +++ + + C RCW +G+ ++
Sbjct: 845 NEDLKQLFIVSEYKLGGMMEEAPADAPKYEHTAVVVAQATGETCERCWVVSETIGKDAEH 904
Query: 1327 PDLCNRC 1333
LC RC
Sbjct: 905 ETLCERC 911
|
|
| TAIR|locus:2154349 OVA2 "ovule abortion 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1370 (487.3 bits), Expect = 2.5e-148, Sum P(3) = 2.5e-148
Identities = 317/886 (35%), Positives = 491/886 (55%)
Query: 1575 REPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYN 1634
REP K W+E +++ ++ + N FILHDGPPYANGD+H+GHA+NKILKDII ++
Sbjct: 122 REPELQKLWEENQVFKRVSDNN-NGGSFILHDGPPYANGDLHMGHALNKILKDIINRYKL 180
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQI----EKLYGKNLSPIEIQNKARALAYEKIEQQKMDFM 1690
+ + QYVPG+DCHG+PIE+++ ++ K L+P++++ KA A ++ Q F
Sbjct: 181 LQNYKVQYVPGWDCHGLPIELKVLQSLDQEVRKELTPLKLRAKAAKFAKATVKTQMESFK 240
Query: 1691 RLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 1750
R G+ +W+N Y T+D EA ++ FG + KGY+Y G KPV+W ++ALAEAE+EY
Sbjct: 241 RFGVWADWNNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSRTALAEAELEY 300
Query: 1751 KKKY-DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD 1809
+ + SIY F K S+ + + +P+ Y+ +WT+TPWT+PAN A+ V+ +
Sbjct: 301 PEGHISKSIYAIFKLVGGAKT-SLLD-EFIPNI--YLAVWTTTPWTMPANAAVAVNAKLQ 356
Query: 1810 YALVHI----------------------KNDPPLLLILAFNLVKSCLXXXXXXXXXXXXX 1847
Y++V + KN L +I+A +LV +
Sbjct: 357 YSVVEVQSFSEDESTVTSNKKKIPGKVLKNQQKLFVIVATDLVPALEAKWGVKLSISKTF 416
Query: 1848 XXXXLSKINFFHPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLIFKKQ 1906
L + HP+ N D P+ +G DYIT +SGTG+VH+AP +G ED+ K
Sbjct: 417 LGSDLENCRYTHPIDNRDC------PVVIGGDYITTESGTGLVHTAPGHGQEDYATGLKY 470
Query: 1907 NMKDSDIINPVMDDGNFISTLPLFGGMSIW-KASKLICSYLKKSKTLFNIEMFEHSYMHC 1965
+ +++PV D+G F F G+S+ + + + SYL ++ +L E + H Y +
Sbjct: 471 GLP---LVSPVDDEGKFTEEAGQFRGLSVLGEGNTAVVSYLDENMSLVMEESYAHKYPYD 527
Query: 1966 WRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP 2025
WR K P I+R T QWF +++ R + + AIN +K+ P +R+ +M +R
Sbjct: 528 WRTKKPTIFRATEQWFASVE--------GFRTATMDAINNVKWVPHQAVNRISAMTSSRS 579
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGK--LHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG 2083
DW ISRQR WGVPI F H K+ + ++ +T+ ++ I I G + W + +++ L
Sbjct: 580 DWCISRQRTWGVPIPAFYHVKTKEPLMNEETINHVKSI---ISQKGSDAWWYMSVEDLLP 636
Query: 2084 ----DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSS 2139
D A +Y+K DT+DVWFDSG + V+ ++ L FPAD+YLEG+DQHRGWF SS
Sbjct: 637 EKYRDKAADYEKGTDTMDVWFDSGSSWAGVL--GKREGLSFPADVYLEGTDQHRGWFQSS 694
Query: 2140 LLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXXNIIKPQ---------KLCNLFGAEI 2190
LLTSI APY A++THGFV+D N++ P+ K +GA++
Sbjct: 695 LLTSIATQGKAPYSAVITHGFVLDEKGMKMSKSLGNVVDPRLVIEGGKNSKDAPAYGADV 754
Query: 2191 LRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEI 2250
+RLWV+S DY+ D+ I +IL ++ + YR++R TLR+LL N D+ + N + D+ I
Sbjct: 755 MRLWVSSVDYTGDVLIGPQILRQMSDIYRKLRGTLRYLLGNLHDWRVD-NAVPYQDLPII 813
Query: 2251 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 2310
D++A+ + N+ K I Y Y+F I +Q + DL +FY DI KDRLYT +S
Sbjct: 814 DQHALFQLENVVKNIQECYENYQFFKIFQIIQRFTIVDLSNFYFDIAKDRLYTGGTSSFT 873
Query: 2311 RRSAQTSI-WHINQSLLRLISPILSFTSEEAWSI--FSDKNFYIESGETIFTQLHYKLPK 2367
RRS QT + H+ S+LR+I+PI+ +E+ W F +N + E +F L +
Sbjct: 874 RRSCQTVLSTHL-LSILRVIAPIVPHLAEDVWQNLPFEYRNEDGSAAEFVFELKWPTLNE 932
Query: 2368 VYNSXXXXXXXX--XXXXXRSKVMQKLEKIRSTGIIGSSLQAEIIL 2411
+ S R++V + LE R+ +IGSSL+A++ L
Sbjct: 933 QWLSFPAEDVLFWQRLLELRTEVNKVLELARNEKMIGSSLEAKVYL 978
|
|
| TIGR_CMR|SPO_3136 SPO_3136 "isoleucyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 8.6e-147, Sum P(2) = 8.6e-147
Identities = 194/569 (34%), Positives = 294/569 (51%)
Query: 1938 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK----- 1992
A+K + L + L +HSY H WR K PIIYR T QWF ++D+ P N+
Sbjct: 407 ANKTVIDKLVEVGGLLARGKIKHSYPHSWRSKAPIIYRNTPQWFASVDR-PVNDGQDSYG 465
Query: 1993 KSLRESAITAINK-IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH 2051
K++RE A+T+I++ +KF P G++RL SMI RPDW +SRQR WGVP+ F K +
Sbjct: 466 KTIRERALTSIDQLVKFTPQTGRNRLYSMIEARPDWVLSRQRAWGVPLTCFTRKGALPTD 525
Query: 2052 PKTLELIELIAKKI----ELNGIEIWQNLDIKE-FLGDD--AVNYKKSNDTLDVWFDSGI 2104
L + +I E G + W KE FLG+D A + + D LDVWFDSG
Sbjct: 526 ADFLLRDPAVNARIFAAFEAEGADCWYAEGAKERFLGNDYKADEWDQVFDVLDVWFDSGS 585
Query: 2105 THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDX 2164
TH V+R AD+Y+EG+DQHRGWFHSSLL + APY+ ++THGF +D
Sbjct: 586 THAFVLRDREDGTADGIADVYMEGTDQHRGWFHSSLLQACGTLGRAPYRNVVTHGFTLDE 645
Query: 2165 XXXXXXXXXXNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNT 2224
N I P ++ +GA+ILRLWVA TDY+ D I EIL V ++YRR+RNT
Sbjct: 646 KGMKMSKSLGNTIVPDEVVKQYGADILRLWVAQTDYTADQRIGPEILKGVADSYRRLRNT 705
Query: 2225 LRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIY 2284
+RF+L + SDF I ++M ++++ + + L +++ Y ++F + S + +
Sbjct: 706 MRFMLGSLSDFTEADRIEDPAEMPPLERWVLSRMAELDEQVRKGYAGFDFQGVYSAVFNF 765
Query: 2285 CSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344
+ DL +FY DI KD LY + RR+A+T + + L ++PIL FT EE W
Sbjct: 766 ATVDLSAFYFDIRKDVLYCDGDTTR-RRAARTVLDLLFHRLTTWLAPILVFTMEEVWL-- 822
Query: 2345 SDKNFYIESGETIFTQLHYKLPKVYNSXXXXXXXXXXXXXRSKVMQKLEKIRSTGIIGSS 2404
Y G ++ + P + + R V LE R +IGSS
Sbjct: 823 ---ERYPGEGSSVHLVDFPETPASWRNPQNESNVARVRRVRRVVTAALEIQRRDKVIGSS 879
Query: 2405 LQAEIILKINKLDFE-ILNEFGEELKFFLLTSSVSL---------FQIKNLSEECIIIKP 2454
L+A ++ + + +L + ++ +TS +++ F++ + ++ +
Sbjct: 880 LEAAPVVHVEDAETRALLAQI--DIDDLCITSGLTVSADPAPAEAFRLPEIEGVGVVFEM 937
Query: 2455 SIYKKCNRCWHYQADVGERDDYPDLCNRC 2483
+ +KC RCW DVG R + +C RC
Sbjct: 938 AEGEKCQRCWKILPDVG-RHAHAGVCGRC 965
|
|
| TIGR_CMR|CJE_1204 CJE_1204 "isoleucyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 1405 (499.6 bits), Expect = 1.3e-142, P = 1.3e-142
Identities = 345/934 (36%), Positives = 501/934 (53%)
Query: 1558 ETASLVALAI-LNGELSKREPGWIKKWQEKKI-YHQIRKASINRPK-FILHDGPPYANGD 1614
ET L + + + L++ EP KKW E+ Y ++++ N K F LHDGPPYANG
Sbjct: 5 ETLLLPSTSFAMRANLAELEPQRFKKWFEQNYAYEKMKENRKNAKKSFTLHDGPPYANGH 64
Query: 1615 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG---KNLSPIEIQ 1671
IHIGHA+NKILK+ I+K + G ++ PG+DCHG+PIE Q+E G K+LS EI+
Sbjct: 65 IHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLPIEQQVEVKLGEKKKSLSKKEIR 124
Query: 1672 NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLK 1731
R A E ++ Q+ +F LGI+ +WD Y TM F EA R I KKG + K
Sbjct: 125 EFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKFEFEAAIYRTLCEIAKKGLLCERSK 184
Query: 1732 PVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTS 1791
PV W + KSALAEAE+EY+ K D+SI+V F +K+ + L K VIWT+
Sbjct: 185 PVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD----VKAC---EKLGVSKASTVIWTT 237
Query: 1792 TPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLXXXXXXXXXXXXXXXXX 1851
TPWT+ ANQA+ ++P +Y + K LI A L+KS +
Sbjct: 238 TPWTLVANQAIALNPNENYVIT--KEG----LIFASALLKSMVEKGLTSGEIQKELNAKE 291
Query: 1852 LSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS 1911
K+ +PL+ R S + +G+++ +D G+G+VH+AP +G +D+ K +
Sbjct: 292 FEKLEAINPLNG------RKSVLIMGEHVLMDGGSGLVHTAPGHGEDDYYACLKYGI--- 342
Query: 1912 DIINPVMDDGNFISTLPLFG-----------GMSIWKASKLICSYLKKSKTLFNIEMFEH 1960
+++ PV D G + TL G G+ I+KA++ I L + L + F H
Sbjct: 343 EVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELL--GEKLLHSSKFIH 400
Query: 1961 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSM 2020
SY CWR P+IYR T QWFI MD+ PK + K+LRE A + K F+P G R+ SM
Sbjct: 401 SYPFCWRTHKPVIYRATKQWFILMDE-PKLQGKTLRECAKEQLLKTTFYPQSGVKRIGSM 459
Query: 2021 ILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE 2080
+ NRPDW ISRQR WG PIAFF K + ++ EL + +A E +G + W +IK+
Sbjct: 460 VENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDD-ELFDFVAAIFEKHGADAWWEFEIKD 518
Query: 2081 FLGDD----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWF 2136
+ + A N +K D LDVWFDSG T V+ A +YLEGSDQHRGWF
Sbjct: 519 LIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASMYLEGSDQHRGWF 578
Query: 2137 HSSLLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXXNIIKPQKLCNLFGAEILRLWVA 2196
SSLL +N+SAPY+++LTHGF D N+I P+ + +G EILRLW+
Sbjct: 579 QSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYVAKTYGVEILRLWIL 638
Query: 2197 STDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII 2256
+DY DL IS+ IL +V E YR+IRNT+RFLLANT+D +++ + IDK+ +
Sbjct: 639 LSDYLSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKD----LEVKEFSFIDKWILS 694
Query: 2257 NITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQT 2316
T + K + YEF S L + S DL YLDI KDRLY +N+ R+SAQ
Sbjct: 695 RATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLYCDSENAQRRKSAQV 754
Query: 2317 SIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES-GETIFTQLHYKLPKVYNSXXXX 2375
++ I + LL L++ LS++ +EA N I+ + +F L + ++
Sbjct: 755 AMALIAKELLNLLASNLSYSVDEA---LEHANVLIKGDAKDVFD---LSLTQDFD-YDFG 807
Query: 2376 XXXXXXXXXRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 2435
R K ++++ ++ II S+L+ + + NK E L ++ +
Sbjct: 808 IDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADWFMVSQISNENE 867
Query: 2436 SV-SLFQIKNLSEECIIIKPSIYKKCNRCWHYQA 2468
+ + F+++N E+ I K S+ K C RCW Q+
Sbjct: 868 EILAEFEVEN--EKFKITKASLCK-CPRCWKLQS 898
|
|
| DICTYBASE|DDB_G0293030 mileS "isoleucyl-tRNA synthetase, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 8.0e-138, Sum P(2) = 8.0e-138
Identities = 333/926 (35%), Positives = 516/926 (55%)
Query: 1568 LNGELSKREPGWIKKWQEKKIYH-QIRKASINRPK-FILHDGPPYANGDIHIGHAVNKIL 1625
+ + REP +K K+Y Q+ N+ + ++ HDGPPYANGD+H+GHA+NKIL
Sbjct: 56 MKANAATREPTLLK--DPYKLYKWQLEN---NKGENWVFHDGPPYANGDLHMGHALNKIL 110
Query: 1626 KDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKN--LSPIEIQNKARALAYEKIE 1683
KDI+ ++ + GF Y+PG+DCHG+PIE Q K K+ + +I+ A A ++IE
Sbjct: 111 KDIVNRYKVLKGFKVNYIPGWDCHGLPIEQQAFKKLKKSSDMKASDIRKIAGDFARKEIE 170
Query: 1684 QQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 1743
+Q F +GILG+W+N YKT+D+ E +++ F +F KGY+Y G+KPV+W ++AL
Sbjct: 171 KQSKGFQEMGILGDWENPYKTLDYGYEVEQIQTFYDMFNKGYIYRGVKPVHWSPSSRTAL 230
Query: 1744 AEAEIEYKKKYDF-SIYVGFSFSEPEKIKSIFN--LKNLPS----GKGYIVI----WTST 1792
A+AE+EY + SI+V F+ +KS+ N L NLP+ K +VI WT+T
Sbjct: 231 ADAELEYNNNHTSKSIFVKFN------VKSLSNHILNNLPTTSDINKAEMVISAIIWTTT 284
Query: 1793 PWTIPANQALHVHPEFDYALVH-IKNDPPL--LLILAFNLVKSCLXXXXXXXXXXXXXXX 1849
PWTIPANQA+ V+ E DY LV I+++ + I++ ++S
Sbjct: 285 PWTIPANQAICVNSEMDYILVKPIESEQYRNEMFIISKERLESLTKSFNIGELKVILEFK 344
Query: 1850 XXLSKINFF-HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 1908
K HP Y+R SPI GD++ SGTG+VH+AP +G+EDF I ++Q
Sbjct: 345 GEQLKGTITKHP------QYDRESPIITGDHVIEGSGTGLVHTAPGHGVEDFQICQQQ-Y 397
Query: 1909 KDSDIINPVMDDGNFISTL-PLFGGMSIW-KASKLICSYLKKSKTLFNIEMFEHSYMHCW 1966
D +++PV D G F + F G+ + ++ + + L+ +L + E + H Y + W
Sbjct: 398 PDLKVLSPVNDLGCFTDEVGEKFVGLEVLGDGNEAVINDLETIGSLLHKEDYIHKYPYDW 457
Query: 1967 RHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPD 2026
R K PII RTTLQWF+ + K+++++A+ +I ++ P G +RL SMI R D
Sbjct: 458 RTKKPIIIRTTLQWFVGL--------KNIQKTALQSIERVNMVPPSGSNRLSSMIGKRTD 509
Query: 2027 WTISRQRHWGVPIAFFIHKKSGK--LHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG- 2083
W ISRQR WG PI + K+ + ++ +++ I+ + K G + W + ++ L
Sbjct: 510 WCISRQRVWGCPIPVLYNCKTNEPLINDESINHIKELFGKF---GSDCWFEMSTQQLLPP 566
Query: 2084 ---DDAVNYKKSNDTLDVWFDSGITHQTVI--RGSHKKQLIFPADLYLEGSDQHRGWFHS 2138
D N+ K DT+DVWFDSG + + V+ RG K AD+YLEGSDQHRGWF S
Sbjct: 567 SLKDQHENFVKGTDTMDVWFDSGTSWRGVLVERGIIDKDT-GRADIYLEGSDQHRGWFQS 625
Query: 2139 SLLTSIILNKSAPYKALLTHGFVVDXXXXXXXXXXXN------IIK--PQKLCNL-FGAE 2189
SLLTS+ + PYK ++THGF++D N +IK P K+ N +G +
Sbjct: 626 SLLTSVCVRDIEPYKNVVTHGFLLDESGIKMSKSIGNTIVPSTVIKGGPNKVQNPPYGVD 685
Query: 2190 ILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 2249
+LR WVAS+DYSKD+SI IL ++++ ++IRNTLRF+LA+ DF+P I+ I +
Sbjct: 686 LLRTWVASSDYSKDISIGPNILIKILDGIKKIRNTLRFMLASNFDFDPTIHAIPYEKLSS 745
Query: 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH 2309
+DKYA+ + LQ+ + HY ++F + +++ I S ++ SFY D++K LY NSH
Sbjct: 746 LDKYALHRVFKLQESVTRHYDQFQFQKVHTEI-INFSIEISSFYFDVIKRHLYAESPNSH 804
Query: 2310 ARRSAQTSIWHINQSLLRLISPILSFTSEEAWSI---FS------DKNFYIESGETIFTQ 2360
+RRS QT ++ + + ++PI TSE+ + F DKN IE+ ++F
Sbjct: 805 SRRSTQTVLFKMLDVINIALAPITVHTSEDVFLHQYQFKNNGKGLDKNL-IEN--SVFAH 861
Query: 2361 LHYKLPKVYNSXXXXXXXXXXXXXRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEI 2420
+LP Y + R V + L+ +RS GIIG S E I+++ + E
Sbjct: 862 GWDQLPSQYENELISNQFTNIIAIRDVVNRVLQSMRSQGIIGRS--DETIMELTVTNEES 919
Query: 2421 LNEFGEELKFFLLTSSVS-LFQIKNL 2445
+ F + L F + S + +F + N+
Sbjct: 920 -SPFYDNL--FAINSQLDDIFCVSNV 942
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0K7A0 | SYI_CUPNH | 6, ., 1, ., 1, ., 5 | 0.5703 | 0.3675 | 0.9502 | yes | N/A |
| A9AGN6 | SYI_BURM1 | 6, ., 1, ., 1, ., 5 | 0.5798 | 0.3659 | 0.9650 | yes | N/A |
| B1YVA4 | SYI_BURA4 | 6, ., 1, ., 1, ., 5 | 0.5798 | 0.3659 | 0.9650 | yes | N/A |
| A1K4R7 | SYI_AZOSB | 6, ., 1, ., 1, ., 5 | 0.5281 | 0.3635 | 0.9721 | yes | N/A |
| Q63WI3 | SYI1_BURPS | 6, ., 1, ., 1, ., 5 | 0.5808 | 0.3659 | 0.9650 | yes | N/A |
| Q7W8Z2 | SYI_BORPA | 6, ., 1, ., 1, ., 5 | 0.5700 | 0.3679 | 0.9622 | yes | N/A |
| B2UAQ4 | SYI_RALPJ | 6, ., 1, ., 1, ., 5 | 0.5594 | 0.3675 | 0.9551 | yes | N/A |
| B3R6E8 | SYI_CUPTR | 6, ., 1, ., 1, ., 5 | 0.5699 | 0.3675 | 0.9482 | yes | N/A |
| B2JDY9 | SYI_BURP8 | 6, ., 1, ., 1, ., 5 | 0.5878 | 0.3663 | 0.9661 | yes | N/A |
| Q62HL4 | SYI1_BURMA | 6, ., 1, ., 1, ., 5 | 0.5808 | 0.3659 | 0.9650 | yes | N/A |
| Q7WKD5 | SYI_BORBR | 6, ., 1, ., 1, ., 5 | 0.5700 | 0.3679 | 0.9622 | yes | N/A |
| Q7VXK3 | SYI_BORPE | 6, ., 1, ., 1, ., 5 | 0.5721 | 0.3679 | 0.9622 | yes | N/A |
| Q13UW2 | SYI_BURXL | 6, ., 1, ., 1, ., 5 | 0.5932 | 0.3663 | 0.9661 | yes | N/A |
| Q2T0H3 | SYI_BURTA | 6, ., 1, ., 1, ., 5 | 0.5841 | 0.3659 | 0.9650 | yes | N/A |
| B2T6I7 | SYI_BURPP | 6, ., 1, ., 1, ., 5 | 0.5943 | 0.3663 | 0.9661 | yes | N/A |
| A6SW71 | SYI_JANMA | 6, ., 1, ., 1, ., 5 | 0.6201 | 0.3695 | 0.9613 | yes | N/A |
| Q39DM8 | SYI_BURS3 | 6, ., 1, ., 1, ., 5 | 0.5830 | 0.3659 | 0.9650 | yes | N/A |
| A4JH32 | SYI_BURVG | 6, ., 1, ., 1, ., 5 | 0.5841 | 0.3659 | 0.9650 | yes | N/A |
| B1JXC3 | SYI_BURCC | 6, ., 1, ., 1, ., 5 | 0.5841 | 0.3659 | 0.9650 | yes | N/A |
| Q1LJB8 | SYI_RALME | 6, ., 1, ., 1, ., 5 | 0.5691 | 0.3675 | 0.9551 | yes | N/A |
| Q47BK5 | SYI_DECAR | 6, ., 1, ., 1, ., 5 | 0.5021 | 0.3619 | 0.9678 | yes | N/A |
| C1DCX2 | SYI_LARHH | 6, ., 1, ., 1, ., 5 | 0.5020 | 0.3627 | 0.9446 | yes | N/A |
| A9IRC2 | SYI_BORPD | 6, ., 1, ., 1, ., 5 | 0.5668 | 0.3679 | 0.9622 | yes | N/A |
| A0K9T5 | SYI_BURCH | 6, ., 1, ., 1, ., 5 | 0.5808 | 0.3659 | 0.9650 | yes | N/A |
| A4G3E6 | SYI_HERAR | 6, ., 1, ., 1, ., 5 | 0.6352 | 0.3687 | 0.9582 | yes | N/A |
| Q1BUA1 | SYI_BURCA | 6, ., 1, ., 1, ., 5 | 0.5808 | 0.3659 | 0.9650 | yes | N/A |
| Q46XM7 | SYI_CUPPJ | 6, ., 1, ., 1, ., 5 | 0.5677 | 0.3675 | 0.9511 | yes | N/A |
| Q2L2K5 | SYI_BORA1 | 6, ., 1, ., 1, ., 5 | 0.5636 | 0.3679 | 0.9622 | yes | N/A |
| Q3SHS3 | SYI_THIDA | 6, ., 1, ., 1, ., 5 | 0.5086 | 0.3607 | 0.9677 | yes | N/A |
| Q0BCK8 | SYI_BURCM | 6, ., 1, ., 1, ., 5 | 0.5808 | 0.3659 | 0.9650 | yes | N/A |
| B4E8Z7 | SYI_BURCJ | 6, ., 1, ., 1, ., 5 | 0.5841 | 0.3659 | 0.9650 | yes | N/A |
| Q5P221 | SYI_AROAE | 6, ., 1, ., 1, ., 5 | 0.5279 | 0.3647 | 0.9680 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.5 | 0.737 |
| 3rd Layer | 2.1.1 | 0.691 |
| 3rd Layer | 3.5.4.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.5.4 | 0.691 |
| 3rd Layer | 6.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2492 | |||
| PRK05743 | 912 | PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe | 0.0 | |
| PRK05743 | 912 | PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe | 0.0 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 0.0 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 0.0 | |
| PRK13804 | 961 | PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi | 0.0 | |
| PRK13804 | 961 | PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi | 0.0 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 0.0 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 0.0 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 0.0 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 0.0 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 0.0 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 0.0 | |
| PRK06039 | 975 | PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe | 1e-153 | |
| PRK06039 | 975 | PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe | 1e-148 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 3e-96 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 3e-91 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 9e-87 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 1e-83 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 2e-82 | |
| PLN02882 | 1159 | PLN02882, PLN02882, aminoacyl-tRNA ligase | 2e-79 | |
| PLN02882 | 1159 | PLN02882, PLN02882, aminoacyl-tRNA ligase | 1e-78 | |
| PTZ00427 | 1205 | PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati | 4e-77 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 6e-77 | |
| PTZ00427 | 1205 | PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati | 4e-76 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 3e-74 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 3e-74 | |
| PRK11713 | 234 | PRK11713, PRK11713, 16S ribosomal RNA methyltransf | 2e-71 | |
| cd07960 | 180 | cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d | 1e-66 | |
| cd07960 | 180 | cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d | 1e-66 | |
| pfam04452 | 224 | pfam04452, Methyltrans_RNA, RNA methyltransferase | 1e-66 | |
| COG1385 | 246 | COG1385, COG1385, Uncharacterized protein conserve | 2e-63 | |
| PRK14900 | 1052 | PRK14900, valS, valyl-tRNA synthetase; Provisional | 2e-56 | |
| PRK14900 | 1052 | PRK14900, valS, valyl-tRNA synthetase; Provisional | 6e-54 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 2e-53 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 2e-53 | |
| PRK10860 | 172 | PRK10860, PRK10860, tRNA-specific adenosine deamin | 2e-49 | |
| COG0590 | 152 | COG0590, CumB, Cytosine/adenosine deaminases [Nucl | 3e-49 | |
| pfam04452 | 224 | pfam04452, Methyltrans_RNA, RNA methyltransferase | 3e-48 | |
| PRK11713 | 234 | PRK11713, PRK11713, 16S ribosomal RNA methyltransf | 3e-47 | |
| TIGR00046 | 240 | TIGR00046, TIGR00046, RNA methyltransferase, RsmE | 9e-43 | |
| COG1385 | 246 | COG1385, COG1385, Uncharacterized protein conserve | 1e-42 | |
| PLN02943 | 958 | PLN02943, PLN02943, aminoacyl-tRNA ligase | 1e-41 | |
| PLN02943 | 958 | PLN02943, PLN02943, aminoacyl-tRNA ligase | 3e-41 | |
| cd01285 | 109 | cd01285, nucleoside_deaminase, Nucleoside deaminas | 2e-40 | |
| PTZ00419 | 995 | PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro | 4e-40 | |
| PTZ00419 | 995 | PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro | 7e-37 | |
| PLN02381 | 1066 | PLN02381, PLN02381, valyl-tRNA synthetase | 1e-34 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-34 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-34 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 7e-34 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 7e-34 | |
| PLN02381 | 1066 | PLN02381, PLN02381, valyl-tRNA synthetase | 8e-34 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 7e-32 | |
| TIGR00046 | 240 | TIGR00046, TIGR00046, RNA methyltransferase, RsmE | 4e-30 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-30 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-30 | |
| PRK05729 | 874 | PRK05729, valS, valyl-tRNA synthetase; Reviewed | 8e-30 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 5e-29 | |
| PRK05729 | 874 | PRK05729, valS, valyl-tRNA synthetase; Reviewed | 2e-27 | |
| pfam00383 | 104 | pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti | 3e-26 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 7e-24 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 7e-24 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 1e-20 | |
| COG0590 | 152 | COG0590, CumB, Cytosine/adenosine deaminases [Nucl | 4e-20 | |
| pfam08264 | 148 | pfam08264, Anticodon_1, Anticodon-binding domain o | 6e-20 | |
| pfam08264 | 148 | pfam08264, Anticodon_1, Anticodon-binding domain o | 6e-20 | |
| COG0084 | 256 | COG0084, TatD, Mg-dependent DNase [DNA replication | 2e-19 | |
| PRK10860 | 172 | PRK10860, PRK10860, tRNA-specific adenosine deamin | 5e-19 | |
| TIGR00010 | 252 | TIGR00010, TIGR00010, hydrolase, TatD family | 6e-19 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 2e-18 | |
| PRK10812 | 265 | PRK10812, PRK10812, putative DNAse; Provisional | 3e-18 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 4e-18 | |
| pfam01026 | 255 | pfam01026, TatD_DNase, TatD related DNase | 2e-17 | |
| cd01310 | 251 | cd01310, TatD_DNAse, TatD like proteins; E | 3e-17 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 5e-17 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 5e-17 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 4e-16 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 4e-16 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 4e-15 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 4e-15 | |
| COG0117 | 146 | COG0117, RibD, Pyrimidine deaminase [Coenzyme meta | 1e-14 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 3e-14 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 6e-14 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 6e-14 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 6e-14 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 6e-14 | |
| PRK05729 | 874 | PRK05729, valS, valyl-tRNA synthetase; Reviewed | 1e-13 | |
| PRK05729 | 874 | PRK05729, valS, valyl-tRNA synthetase; Reviewed | 1e-13 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 3e-13 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 3e-13 | |
| cd01285 | 109 | cd01285, nucleoside_deaminase, Nucleoside deaminas | 1e-11 | |
| cd01284 | 115 | cd01284, Riboflavin_deaminase-reductase, Riboflavi | 1e-11 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 2e-11 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 2e-11 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 2e-11 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 2e-11 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 1e-10 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 1e-10 | |
| cd01286 | 131 | cd01286, deoxycytidylate_deaminase, Deoxycytidylat | 1e-10 | |
| PLN02563 | 963 | PLN02563, PLN02563, aminoacyl-tRNA ligase | 8e-10 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 9e-10 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 9e-10 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 1e-09 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 1e-09 | |
| TIGR00326 | 344 | TIGR00326, eubact_ribD, riboflavin biosynthesis pr | 2e-09 | |
| cd00786 | 96 | cd00786, cytidine_deaminase-like, Cytidine and deo | 4e-09 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 5e-09 | |
| COG2131 | 164 | COG2131, ComEB, Deoxycytidylate deaminase [Nucleot | 8e-09 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 1e-08 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 1e-08 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 1e-08 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 1e-08 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 1e-08 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 1e-08 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 2e-07 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 2e-07 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 4e-07 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 4e-07 | |
| pfam06827 | 30 | pfam06827, zf-FPG_IleRS, Zinc finger found in FPG | 4e-07 | |
| pfam06827 | 30 | pfam06827, zf-FPG_IleRS, Zinc finger found in FPG | 4e-07 | |
| cd07962 | 135 | cd07962, Anticodon_Ia_Val, Anticodon-binding domai | 6e-07 | |
| cd07962 | 135 | cd07962, Anticodon_Ia_Val, Anticodon-binding domai | 6e-07 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 8e-07 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 8e-07 | |
| PLN02563 | 963 | PLN02563, PLN02563, aminoacyl-tRNA ligase | 3e-06 | |
| PRK00390 | 805 | PRK00390, leuS, leucyl-tRNA synthetase; Validated | 4e-06 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 1e-05 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 1e-05 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 2e-05 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 2e-05 | |
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 2e-05 | |
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 2e-05 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 4e-05 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 4e-05 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 7e-05 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 7e-05 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 9e-05 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 9e-05 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 1e-04 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 1e-04 | |
| PRK10786 | 367 | PRK10786, ribD, bifunctional diaminohydroxyphospho | 1e-04 | |
| cd07375 | 117 | cd07375, Anticodon_Ia_like, Anticodon-binding doma | 5e-04 | |
| cd07375 | 117 | cd07375, Anticodon_Ia_like, Anticodon-binding doma | 5e-04 | |
| PLN02807 | 380 | PLN02807, PLN02807, diaminohydroxyphosphoribosylam | 6e-04 | |
| pfam01921 | 357 | pfam01921, tRNA-synt_1f, tRNA synthetases class I | 9e-04 | |
| pfam01921 | 357 | pfam01921, tRNA-synt_1f, tRNA synthetases class I | 9e-04 | |
| cd00674 | 353 | cd00674, LysRS_core_class_I, catalytic core domain | 0.001 | |
| cd00674 | 353 | cd00674, LysRS_core_class_I, catalytic core domain | 0.001 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.002 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.002 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 0.003 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 0.003 | |
| PRK00750 | 510 | PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | 0.003 | |
| PRK00750 | 510 | PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | 0.003 |
| >gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 1399 bits (3625), Expect = 0.0
Identities = 461/930 (49%), Positives = 629/930 (67%), Gaps = 48/930 (5%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
L KREP +K+W+E +Y +IR+A+ +PKFILHDGPPYANGDIHIGHA+NKILKDII
Sbjct: 19 ANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDII 78
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQK 1686
VK M GFDA YVPG+DCHG+PIE+++EK GK LS E + K R A E+++ Q+
Sbjct: 79 VKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQR 138
Query: 1687 MDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEA 1746
DF RLG+LG+WDN Y TMDF EAN +RA G + KKGY+Y GLKPV WC DC SALAEA
Sbjct: 139 EDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEA 198
Query: 1747 EIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHP 1806
E+EY K SIYV F + K+ + F +VIWT+TPWT+PANQA+ VHP
Sbjct: 199 EVEYHDKTSPSIYVAFPVVD-GKLAAAF-------KDASLVIWTTTPWTLPANQAIAVHP 250
Query: 1807 EFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF-KGNIIGICKGIKLSKINFFHPLSNID 1865
EFDY LV ++ + LI+A +LV+S L++FG+ ++ KG +L + HP
Sbjct: 251 EFDYVLVEVEGE---KLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPF---- 303
Query: 1866 INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFIS 1925
Y+R SP+ LGD++T+D+GTG+VH+AP +G +D+++ +K + +++NPV DDG +
Sbjct: 304 --YDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGL---EVLNPVDDDGRYTE 358
Query: 1926 TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMD 1985
PLF G+ ++KA+ I L++ L E HSY HCWR K P+I+R T QWFI+MD
Sbjct: 359 EAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMD 418
Query: 1986 KIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHK 2045
K K LRE A+ AI K+K+ P+WGK+R++SM+ NRPDW ISRQR WGVPI F HK
Sbjct: 419 K------KGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHK 472
Query: 2046 KSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGIT 2105
++G+LHP T ELIE +AK E GI+ W LD KE L D+A Y+K D LDVWFDSG +
Sbjct: 473 ETGELHP-TPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSS 531
Query: 2106 HQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSK 2165
H V+ + +L +PADLYLEGSDQHRGWF SSLLTS+ APYK +LTHGF VD K
Sbjct: 532 HAAVLE--QRPELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGK 589
Query: 2166 GKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTL 2225
G+KMSKS GN+I PQ + +GA+ILRLWVASTDYS D+ IS+EIL +V E YRRIRNTL
Sbjct: 590 GRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTL 649
Query: 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285
RFLL N +DF+P + + +++E+D++A+ + LQ+EIL Y Y+FH + KL +C
Sbjct: 650 RFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFC 709
Query: 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFS 2345
S DL +FYLDI+KDRLYT +S ARRSAQT+++HI ++L+R ++PILSFT+EE W
Sbjct: 710 SVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769
Query: 2346 DKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSL 2405
E E++F + ++P++ + ++LL K+ L ++R +V + LE+ R +IGSSL
Sbjct: 770 G-----EREESVFLEEWPEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSL 824
Query: 2406 QAEIILKINKLDFEILNEFGEELKFFLLTSSVSL-------FQIKNLSEECIIIKPSIYK 2458
+AE+ L + +L G+EL+F L+ S V + + + + ++ + +
Sbjct: 825 EAEVTLYADA---ALLESLGDELRFLLIVSQVEVADGPAAAAAAEEVEGLAVKVEKAEGE 881
Query: 2459 KCNRCWHYQADVGERDDYPDLCNRCFNNLF 2488
KC RCWHY+ DVG ++P LC RC +N+
Sbjct: 882 KCERCWHYREDVGSDAEHPTLCGRCVSNVE 911
|
Length = 912 |
| >gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 1357 bits (3516), Expect = 0.0
Identities = 452/915 (49%), Positives = 618/915 (67%), Gaps = 49/915 (5%)
Query: 437 NGVWGEI-KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPG 495
N ++ +I +A+ +PKFILHDGPPYANGDIHIGHA+NKILKDIIVK M GFDA YVPG
Sbjct: 35 NDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPG 94
Query: 496 YDCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSY 552
+DCHG+PIE+++EK GK LS E + K R A E+++ Q+ DF RLG+LG+WDN Y
Sbjct: 95 WDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPY 154
Query: 553 KTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGF 612
TMDF EAN +RA G + KKGY+Y GLKPV WC DC SALAEAE+EY K SIYV F
Sbjct: 155 LTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAF 214
Query: 613 SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL 672
+ K+ + F +VIWT+TPWT+PANQA+ VHPEFDY LV ++ +
Sbjct: 215 PVVD-GKLAAAF-------KDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGE---K 263
Query: 673 LILAFNLVKSCLKKFGF-KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
LI+A +LV+S L++FG+ ++ KG +L + HP Y+R SP+ LGD++T
Sbjct: 264 LIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPF------YDRDSPVILGDHVT 317
Query: 732 VDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKL 791
+D+GTG+VH+AP +G +D+++ +K + +++NPV DDG + PLF G+ ++KA+
Sbjct: 318 LDAGTGLVHTAPGHGEDDYVVGQKYGL---EVLNPVDDDGRYTEEAPLFAGLFVFKANPK 374
Query: 792 ICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 851
I L++ L E HSY HCWR K P+I+R T QWFI+MDK K LRE A+
Sbjct: 375 IIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDK------KGLREQALK 428
Query: 852 AINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELI 911
AI K+K+ P+WGK+R++SM+ NRPDW ISRQR WGVPI F HK++G+LHP T ELIE +
Sbjct: 429 AIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHP-TPELIEHV 487
Query: 912 AKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFP 971
AK E GI+ W LD KE L D+A Y+K D LDVWFDSG +H V+ + +L +P
Sbjct: 488 AKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLE--QRPELGYP 545
Query: 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031
ADLYLEGSDQHRGWF SSLLTS+ APYK +LTHGF VD KG+KMSKS GN+I PQ
Sbjct: 546 ADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQD 605
Query: 1032 LCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI 1091
+ +GA+ILRLWVASTDYS D+ IS+EIL +V E YRRIRNTLRFLL N +DF+P +
Sbjct: 606 VIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDA 665
Query: 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151
+ +++E+D++A+ + LQ+EIL Y Y+FH + KL +CS DL +FYLDI+KDRL
Sbjct: 666 VPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRL 725
Query: 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQL 1211
YT +S ARRSAQT+++HI ++L+R ++PILSFT+EE W E E++F +
Sbjct: 726 YTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPG-----EREESVFLEE 780
Query: 1212 HYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEIL 1271
++P++ + ++LL K+ L ++R +V + LE+ R +IGSSL+AE+ L + +L
Sbjct: 781 WPEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALL 837
Query: 1272 NEFGEELKFFLLTSSVSL-------FQIKNLSEECIIIKPSIYKKCNRCWHYQADVGERD 1324
G+EL+F L+ S V + + + + ++ + +KC RCWHY+ DVG
Sbjct: 838 ESLGDELRFLLIVSQVEVADGPAAAAAAEEVEGLAVKVEKAEGEKCERCWHYREDVGSDA 897
Query: 1325 DYPDLCNRCFNNLFE 1339
++P LC RC +N+
Sbjct: 898 EHPTLCGRCVSNVEG 912
|
Length = 912 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 1089 bits (2820), Expect = 0.0
Identities = 402/945 (42%), Positives = 577/945 (61%), Gaps = 58/945 (6%)
Query: 1569 NGELSKREPGWIKKWQEKKIYHQIRKA-SINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627
L K+EP +K W+E IY +IR+ + +PKF+LHDGPPYANG+IHIGHA+NKILKD
Sbjct: 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKD 76
Query: 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEK 1681
IIV++ M G+D YVPG+DCHG+PIE+++EK G + E + K R A E+
Sbjct: 77 IIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136
Query: 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 1741
+++QK F RLG+ G+W+N YKTMD E + AF +++KG +Y G KPV W C++
Sbjct: 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCET 196
Query: 1742 ALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQA 1801
ALAEAE+EY D SIYV F +K +N Y+VIWT+TPWT+PAN A
Sbjct: 197 ALAEAEVEYGDVKDPSIYVKF------PVKDEGLDENA-----YLVIWTTTPWTLPANLA 245
Query: 1802 LHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG-NIIGICKGIKLSKINFFHP 1860
+ VHP+ DY LV + + LILA LV+S KK G + ++ KG +L + + HP
Sbjct: 246 IAVHPDLDYVLVEVNGE---KLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHP 302
Query: 1861 LSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 1920
D Y+R P+ LGD++T+D GTG+VH+AP +G ED+ + KK + +++NPV D+
Sbjct: 303 FY--DFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGL--LEVLNPVDDN 358
Query: 1921 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQW 1980
G + P + G+ + A+K I LK+ L E EHSY HCWR KTP+IYR T QW
Sbjct: 359 GRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQW 418
Query: 1981 FINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040
F+++DK+ R+ + INK+ + P WGK+R +M+ NRPDW ISRQR+WGVPI
Sbjct: 419 FVSVDKL--------RDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIP 470
Query: 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG---DDAVNYKKSNDTLD 2097
+ K++G++ T EL EL+ + +E GI+ W DI E L +D Y++ D LD
Sbjct: 471 VWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLD 530
Query: 2098 VWFDSGITHQTVIRGSHKKQLI-FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALL 2156
VWFDSG T V+ + AD YLEGSDQ RGWF+SSLLTS L APYK +L
Sbjct: 531 VWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVL 590
Query: 2157 THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
THGFV+D KG+KMSKS GN++ PQ + + +GA+ILRLWVAS+DY +DL S+EIL +V E
Sbjct: 591 THGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVRE 650
Query: 2217 TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHM 2276
YR+IRNT RFLL N DF+P + + ++ E+D++ + + +L KE+ Y Y+FH
Sbjct: 651 VYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHK 710
Query: 2277 IVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFT 2336
+V L + SEDL ++YLDI+KDRLYT +S RR+AQT+++HI ++L+RL++PIL FT
Sbjct: 711 VVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFT 770
Query: 2337 SEEAWSIFSDKNFYIESGETIFTQLHYKL--PKVYNSKKLLYKYMILKKIRSKVMQKLEK 2394
+EE W + E++ + ++ + L ++ L K+R V + LE
Sbjct: 771 AEEIWQNLPGERKE----ESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEA 826
Query: 2395 IRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSL----------FQIKN 2444
R +IGSSL A++++ D E+L + L L+TS+V + +
Sbjct: 827 ARLEKVIGSSLNAKVVIYTE--DSELLYKLKPNLGKVLITSAVEVAKALEALAGAEAEEL 884
Query: 2445 LSEECIIIKP--SIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
+ + + + + +KC RCWHY ++GE + LC RC +
Sbjct: 885 VDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRI 929
|
Length = 933 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 1061 bits (2747), Expect = 0.0
Identities = 392/921 (42%), Positives = 563/921 (61%), Gaps = 57/921 (6%)
Query: 444 KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 503
+ + +PKF+LHDGPPYANG+IHIGHA+NKILKDIIV++ M G+D YVPG+DCHG+PI
Sbjct: 43 ERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPI 102
Query: 504 EIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDF 557
E+++EK G + E + K R A E++++QK F RLG+ G+W+N YKTMD
Sbjct: 103 ELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDP 162
Query: 558 LNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEP 617
E + AF +++KG +Y G KPV W C++ALAEAE+EY D SIYV F
Sbjct: 163 SYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKF----- 217
Query: 618 EKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677
+K +N Y+VIWT+TPWT+PAN A+ VHP+ DY LV + + LILA
Sbjct: 218 -PVKDEGLDENA-----YLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGE---KLILAK 268
Query: 678 NLVKSCLKKFGFKG-NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGT 736
LV+S KK G + ++ KG +L + + HP D Y+R P+ LGD++T+D GT
Sbjct: 269 ALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFY--DFVYDRAFPVILGDHVTLDDGT 326
Query: 737 GIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYL 796
G+VH+AP +G ED+ + KK + +++NPV D+G + P + G+ + A+K I L
Sbjct: 327 GLVHTAPGHGEEDYEVGKKYGL--LEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDL 384
Query: 797 KKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKI 856
K+ L E EHSY HCWR KTP+IYR T QWF+++DK+ R+ + INK+
Sbjct: 385 KEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKL--------RDKMLKEINKV 436
Query: 857 KFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916
+ P WGK+R +M+ NRPDW ISRQR+WGVPI + K++G++ T EL EL+ + +E
Sbjct: 437 NWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVE 496
Query: 917 LNGIEIWQNLDIKEFLG---DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI-FPA 972
GI+ W DI E L +D Y++ D LDVWFDSG T V+ + A
Sbjct: 497 EKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFA 556
Query: 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 1032
D YLEGSDQ RGWF+SSLLTS L APYK +LTHGFV+D KG+KMSKS GN++ PQ +
Sbjct: 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDV 616
Query: 1033 CNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINII 1092
+ +GA+ILRLWVAS+DY +DL S+EIL +V E YR+IRNT RFLL N DF+P + +
Sbjct: 617 IDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAV 676
Query: 1093 KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 1152
++ E+D++ + + +L KE+ Y Y+FH +V L + SEDL ++YLDI+KDRLY
Sbjct: 677 LPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLY 736
Query: 1153 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 1212
T +S RR+AQT+++HI ++L+RL++PIL FT+EE W + E++ +
Sbjct: 737 TEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKE----ESVHLEDW 792
Query: 1213 YKL--PKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEI 1270
++ + L ++ L K+R V + LE R +IGSSL A++++ D E+
Sbjct: 793 PEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTE--DSEL 850
Query: 1271 LNEFGEELKFFLLTSSVSL----------FQIKNLSEECIIIKP--SIYKKCNRCWHYQA 1318
L + L L+TS+V + + + + + + + +KC RCWHY
Sbjct: 851 LYKLKPNLGKVLITSAVEVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDT 910
Query: 1319 DVGERDDYPDLCNRCFNNLFE 1339
++GE + LC RC + E
Sbjct: 911 ELGEELEEEGLCRRCVRRIQE 931
|
Length = 933 |
| >gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 945 bits (2446), Expect = 0.0
Identities = 383/949 (40%), Positives = 530/949 (55%), Gaps = 59/949 (6%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
L ++EP +W+E +Y ++R+ + RPKF+LHDGPPYANG+IHIGHA+NKILKD+I
Sbjct: 24 AGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVI 83
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY---GKN---LSPIEIQNKARALAYEKIE 1683
V+ M GFDA YVPG+DCHG+PIE +IE+ Y GKN + E + + R A I+
Sbjct: 84 VRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWID 143
Query: 1684 QQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 1743
Q+ +F RLG+LG+WDN Y TMDF EA R FG KG +Y G KPV W ++AL
Sbjct: 144 VQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTAL 203
Query: 1744 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803
AEAEIEY +I+V F P K Y+VIWT+TPWTIPAN+A+
Sbjct: 204 AEAEIEYHDIESDTIWVKF----PVKDGKGILDSG-----TYVVIWTTTPWTIPANRAIS 254
Query: 1804 VHPEFDYALVHIKNDPPLL-------LILAFNLVKSCLKKFGFKG-NIIGICKGIKLSKI 1855
P+ +Y L + L++A L +S KK G + + KG L KI
Sbjct: 255 YSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKI 314
Query: 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 1915
HPL +D Y P+ GD++T D+GTG VH+AP +G EDF ++ K ++I
Sbjct: 315 VCAHPLDGLD-GYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKY--GRTEIPV 371
Query: 1916 PVMDDGNFISTLPLFGGMSIW--------KASKLICSYLKKSKTLFNIEMFEHSYMHCWR 1967
V +DG + P FGG + A+K + L ++ L +HSY H WR
Sbjct: 372 TVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWR 431
Query: 1968 HKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDW 2027
K P+I+R T QWFI+MDK + +LR A+ AI+K +F P+ G++RL +MI +RPDW
Sbjct: 432 SKKPVIFRNTPQWFISMDKDLGDGT-TLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDW 490
Query: 2028 TISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE-FLGD-- 2084
ISRQR WGVPI F+ + L + E+ IA E G + W KE FLG
Sbjct: 491 VISRQRAWGVPIPIFVAEDGEILMDE--EVNARIADAFEEEGADAWFAEGAKERFLGGFH 548
Query: 2085 DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144
+ K D LDVWFDSG TH V+ + L +PADLYLEGSDQHRGWF+SSLL S
Sbjct: 549 PNGEFTKVTDILDVWFDSGSTHAFVL--EDRPDLKWPADLYLEGSDQHRGWFNSSLLESC 606
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 2204
APYKA+LTHGF +D KG+KMSKS GN + PQ + GA+ILRLWVAS DYS D
Sbjct: 607 GTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQ 666
Query: 2205 SISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKE 2264
I EIL +V ETYR++RNTLR+LL N + F+P +++ +D+ E+++Y + + L
Sbjct: 667 RIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGL 726
Query: 2265 ILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324
+ Y Y+F I L + + DL +FY DI KD LY +S RR+AQT + I
Sbjct: 727 VREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVR 786
Query: 2325 LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKI 2384
L + ++PIL FT+EEAW Y E ++ + + P + L K+ + +
Sbjct: 787 LTKWLAPILPFTAEEAWL-----YRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAV 841
Query: 2385 RSKVMQKLEKIRSTGIIGSSLQAEIILKINKLD-FEILNEFGEELKFFLLTSSVSL---- 2439
R V LE+ R+ IGSSL+A + I + L G + +TS +++
Sbjct: 842 RDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAAL--EGLDFAEICITSQLTVAAGE 899
Query: 2440 -----FQIKNLSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRC 2483
F++ + ++++ + +KC R W DVG YPD+ R
Sbjct: 900 APADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRD 948
|
Length = 961 |
| >gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 916 bits (2369), Expect = 0.0
Identities = 376/921 (40%), Positives = 514/921 (55%), Gaps = 59/921 (6%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
RPKF+LHDGPPYANG+IHIGHA+NKILKD+IV+ M GFDA YVPG+DCHG+PIE +I
Sbjct: 52 GRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKI 111
Query: 508 EKLY---GKN---LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA 561
E+ Y GKN + E + + R A I+ Q+ +F RLG+LG+WDN Y TMDF EA
Sbjct: 112 EEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEA 171
Query: 562 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIK 621
R FG KG +Y G KPV W ++ALAEAEIEY +I+V F P K
Sbjct: 172 RIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKF----PVKDG 227
Query: 622 SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL-------LI 674
Y+VIWT+TPWTIPAN+A+ P+ +Y L + L+
Sbjct: 228 KGILDSG-----TYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLV 282
Query: 675 LAFNLVKSCLKKFGFKG-NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 733
+A L +S KK G + + KG L KI HPL +D Y P+ GD++T D
Sbjct: 283 VADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLD-GYEFEVPVLDGDHVTDD 341
Query: 734 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW------- 786
+GTG VH+AP +G EDF ++ K ++I V +DG + P FGG +
Sbjct: 342 AGTGFVHTAPGHGREDFNVWMKY--GRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKY 399
Query: 787 -KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 845
A+K + L ++ L +HSY H WR K P+I+R T QWFI+MDK + +L
Sbjct: 400 GDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGT-TL 458
Query: 846 RESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTL 905
R A+ AI+K +F P+ G++RL +MI +RPDW ISRQR WGVPI F+ + L +
Sbjct: 459 RSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDE-- 516
Query: 906 ELIELIAKKIELNGIEIWQNLDIKE-FLGD--DAVNYKKSNDTLDVWFDSGITHQTVIRG 962
E+ IA E G + W KE FLG + K D LDVWFDSG TH V+
Sbjct: 517 EVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-- 574
Query: 963 SHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 1022
+ L +PADLYLEGSDQHRGWF+SSLL S APYKA+LTHGF +D KG+KMSKS
Sbjct: 575 EDRPDLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKS 634
Query: 1023 KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANT 1082
GN + PQ + GA+ILRLWVAS DYS D I EIL +V ETYR++RNTLR+LL N
Sbjct: 635 LGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNL 694
Query: 1083 SDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
+ F+P +++ +D+ E+++Y + + L + Y Y+F I L + + DL +F
Sbjct: 695 AHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAF 754
Query: 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIE 1202
Y DI KD LY +S RR+AQT + I L + ++PIL FT+EEAW Y E
Sbjct: 755 YFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWL-----YRYPE 809
Query: 1203 SGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILK 1262
++ + + P + L K+ + +R V LE+ R+ IGSSL+A +
Sbjct: 810 EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVY 869
Query: 1263 INKLD-FEILNEFGEELKFFLLTSSVSL---------FQIKNLSEECIIIKPSIYKKCNR 1312
I + L G + +TS +++ F++ + ++++ + +KC R
Sbjct: 870 IADPELLAAL--EGLDFAEICITSQLTVAAGEAPADAFRLDEVEGVAVVVEKAEGEKCAR 927
Query: 1313 CWHYQADVGERDDYPDLCNRC 1333
W DVG YPD+ R
Sbjct: 928 SWRITPDVGSDPYYPDVSPRD 948
|
Length = 961 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 835 bits (2158), Expect = 0.0
Identities = 346/882 (39%), Positives = 504/882 (57%), Gaps = 64/882 (7%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
G LSKRE + WQE I+ +++K + +P+FI HDGPPYANG IH+GHA+NKILKDII
Sbjct: 6 GNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDII 65
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKI 1682
+++ M GF+ PG+D HG+PIE ++EK G +L E + K R A ++I
Sbjct: 66 LRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQI 125
Query: 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSA 1742
E+Q+ F RLG+ G+W+N YKTMD E ++ F +KG +Y GLKPV W C++A
Sbjct: 126 EEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTA 185
Query: 1743 LAEAEIEY----KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798
LAEAE+EY K D SIYV F + +K L ++IWT+TPWT+P+
Sbjct: 186 LAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKL-------SSLLIWTTTPWTLPS 238
Query: 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFF 1858
N A+ VHP+F+YALV N ILA LV+ K G II KG L + +
Sbjct: 239 NLAIAVHPDFEYALVQD-NTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYE 297
Query: 1859 HPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917
HPL + +P+ +G D++T + GTGIVH+AP +G ED+ I KK + ++++PV
Sbjct: 298 HPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGL---EVLSPV 354
Query: 1918 MDDGNFISTLPLFGG-------MSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKT 1970
+ G + + F G I KA+K+I LK L E HSY HCWR KT
Sbjct: 355 DEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKT 414
Query: 1971 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTIS 2030
P+IYR T QWFI K +++ + I K+ + P WG+ R + + NRPDW IS
Sbjct: 415 PVIYRATEQWFIKT--------KDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCIS 466
Query: 2031 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD------ 2084
RQR+WG+PI + + +G+ P + IE + + IEL GI+ W ++FL
Sbjct: 467 RQRYWGIPIPIWYCEDTGE--PIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSG 524
Query: 2085 DAVNYKKSNDTLDVWFDSGITHQTVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLL 2141
D Y++ D LDVWFDSG I + K + +FPAD LEGSDQ RGWF+SSL
Sbjct: 525 DGGEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLA 584
Query: 2142 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 2201
L APYK ++THGF +D KG+KMSKS GN++ P K+ N +GA+ILRL+VAS+D
Sbjct: 585 IGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPW 644
Query: 2202 KDLSISNEILNRVVETYRRIR-NTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINI 2258
+DL S+EIL +VVE YR+IR NT RFLL AN F+P N + + E D++ + +
Sbjct: 645 EDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRL 704
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSI 2318
+L +E+ Y FH ++ LQ + E+L ++Y+ I++DRLY K+ + +R+AQT++
Sbjct: 705 NSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD-NDKRAAQTTL 763
Query: 2319 WHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKY 2378
++ +L+RL++P L T+EE + E E++ L ++ + + + L
Sbjct: 764 YYALLTLVRLLAPFLPHTAEEIYQNLP----GGEEEESVHLNLWPEVDEEFIDEALEANM 819
Query: 2379 MILKKI-------RSKVMQKLEKIRSTGIIGSSLQAEIILKI 2413
I+++I R +KL + +IG SL+A +
Sbjct: 820 AIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAVLKAVE 861
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 807 bits (2086), Expect = 0.0
Identities = 336/859 (39%), Positives = 489/859 (56%), Gaps = 64/859 (7%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
K + +P+FI HDGPPYANG IH+GHA+NKILKDII+++ M GF+ PG+D HG+P
Sbjct: 29 KKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLP 88
Query: 503 IEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
IE ++EK G +L E + K R A ++IE+Q+ F RLG+ G+W+N YKTM
Sbjct: 89 IEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTM 148
Query: 556 DFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY----KKKYDFSIYVG 611
D E ++ F +KG +Y GLKPV W C++ALAEAE+EY K D SIYV
Sbjct: 149 DPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVK 208
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F + +K L ++IWT+TPWT+P+N A+ VHP+F+YALV N
Sbjct: 209 FPVKKDKKTYLKVKL-------SSLLIWTTTPWTLPSNLAIAVHPDFEYALVQD-NTKVE 260
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DYI 730
ILA LV+ K G II KG L + + HPL + +P+ +G D++
Sbjct: 261 YFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHV 320
Query: 731 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGG-------M 783
T + GTGIVH+AP +G ED+ I KK + ++++PV + G + + F G
Sbjct: 321 TTEDGTGIVHTAPGHGEEDYEIGKKYGL---EVLSPVDEKGVYTEGVNDFQGRFVKDADK 377
Query: 784 SIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843
I KA+K+I LK L E HSY HCWR KTP+IYR T QWFI K
Sbjct: 378 DIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKT--------K 429
Query: 844 SLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPK 903
+++ + I K+ + P WG+ R + + NRPDW ISRQR+WG+PI + + +G+ P
Sbjct: 430 DIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGE--PI 487
Query: 904 TLELIELIAKKIELNGIEIWQNLDIKEFLGD------DAVNYKKSNDTLDVWFDSGITHQ 957
+ IE + + IEL GI+ W ++FL D Y++ D LDVWFDSG
Sbjct: 488 VVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPY 547
Query: 958 TVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDS 1014
I + K + +FPAD LEGSDQ RGWF+SSL L APYK ++THGF +D
Sbjct: 548 ASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDE 607
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR-N 1073
KG+KMSKS GN++ P K+ N +GA+ILRL+VAS+D +DL S+EIL +VVE YR+IR N
Sbjct: 608 KGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWN 667
Query: 1074 TLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL 1131
T RFLL AN F+P N + + E D++ + + +L +E+ Y FH ++ L
Sbjct: 668 TYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRAL 727
Query: 1132 QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
Q + E+L ++Y+ I++DRLY K+ + +R+AQT++++ +L+RL++P L T+EE +
Sbjct: 728 QDFIVEELSNWYIRIIRDRLYCEAKD-NDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIY 786
Query: 1192 SIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKI-------RSKVMQKLEK 1244
E E++ L ++ + + + L I+++I R +KL +
Sbjct: 787 QNLP----GGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQ 842
Query: 1245 IRSTGIIGSSLQAEIILKI 1263
+IG SL+A +
Sbjct: 843 PLKELVIGKSLEAVLKAVE 861
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 764 bits (1974), Expect = 0.0
Identities = 367/987 (37%), Positives = 549/987 (55%), Gaps = 110/987 (11%)
Query: 1575 REPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYN 1634
REP K W+E ++Y ++ + N F LHDGPPYANGD+HIGHA+NKILKD I ++
Sbjct: 8 REPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQL 66
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQ----IEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFM 1690
+ G YVPG+DCHG+PIE++ +++ K L+PI+++ KA A + ++ Q+ F
Sbjct: 67 LQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFK 126
Query: 1691 RLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 1750
R G+ G+W+N Y T+D EA ++ FG +F GY+Y G KPV+W ++ALAEAE+EY
Sbjct: 127 RYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEY 186
Query: 1751 KKKY-DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD 1809
+ + SIYV F P + S L+ G + IWT+TPWT+PAN A+ V+ +
Sbjct: 187 PEGHVSKSIYVAFPVVSPSE-TSPEELEEFLPGLS-LAIWTTTPWTMPANAAVAVNDKLQ 244
Query: 1810 YALVHI----------------------KNDPPLLLILAFNLVKSCLKKFGFKGNIIGIC 1847
Y++V + K L LI+A +LV + K+G K ++
Sbjct: 245 YSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTF 304
Query: 1848 KGIKLSKINFFHPLSNIDINYNRLSPIYL-GDYITVDSGTGIVHSAPAYGIEDFLIFKKQ 1906
G L + HPL YNR SP+ + GDYIT +SGTG+VH+AP +G ED++ K
Sbjct: 305 PGSDLEGCRYIHPL------YNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKY 358
Query: 1907 NMKDSDIINPVMDDGNFISTLPLFGGMSIWKA-SKLICSYLKKSKTLFNIEMFEHSYMHC 1965
+ +++PV D G F F G+S+ + + L ++ +L E + H Y +
Sbjct: 359 GLP---LLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYD 415
Query: 1966 WRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP 2025
WR K P I+R T QWF +++ R++A+ AI+K+K+ P+ G++R+++M+ R
Sbjct: 416 WRTKKPTIFRATEQWFASVE--------GFRQAALDAIDKVKWIPAQGENRIRAMVSGRS 467
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGK--LHPKTLELI-ELIAKKIELNGIEIWQNLDIKEFL 2082
DW ISRQR WGVPI F H ++ + ++ +T+ + ++A+K G + W +D+++ L
Sbjct: 468 DWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQK----GSDAWWYMDVEDLL 523
Query: 2083 ----GDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS 2138
D A +Y+K DT+DVWFDSG + V+ ++ L +PADLYLEGSDQHRGWF S
Sbjct: 524 PEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS--REGLSYPADLYLEGSDQHRGWFQS 581
Query: 2139 SLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP---------QKLCNLFGAE 2189
SLLTS+ APYK++LTHGFV+D KG KMSKS GN++ P QK +GA+
Sbjct: 582 SLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641
Query: 2190 ILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 2249
+LRLWVAS DY+ D+ I +IL ++ + YR++R TLR+LL N D+ P+ N + D+
Sbjct: 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPD-NAVPYEDLPS 700
Query: 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH 2309
IDKYA+ + N+ EI Y Y+F I LQ + DL +FYLD+ KDRLY S
Sbjct: 701 IDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSF 760
Query: 2310 ARRSAQTSIWHINQSLLRLISPILSFTSEEAWS--IFSDKNFYIESGETIFTQLHYKLPK 2367
RRS QT + SLLR I+PIL +E+AW F + + E++F +
Sbjct: 761 TRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDG---SAAESVFEAGWPTPNE 817
Query: 2368 VYNS--KKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDF-EILNEF 2424
+ S + + + +L ++R +V + LE R+ +IG+SL+A++ L + L E
Sbjct: 818 EWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAEL 877
Query: 2425 ------GEELKFFLLTSSVSLFQIKNLSEECIIIKPSIYK-------------------- 2458
+EL+ +TS V + SE+ Y
Sbjct: 878 CGASNGADELRRIFITSQVEVVS----SEDDETAACGSYTGEYVEGAGRVWVGVSRADGS 933
Query: 2459 KCNRCWHYQADVGERDDYPDLCNRCFN 2485
KC RCW+Y VG D+P LC RC+
Sbjct: 934 KCERCWNYSPAVGSFSDHPTLCERCYP 960
|
Length = 974 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 751 bits (1940), Expect = 0.0
Identities = 362/975 (37%), Positives = 540/975 (55%), Gaps = 109/975 (11%)
Query: 437 NGVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 496
N V+ + N F LHDGPPYANGD+HIGHA+NKILKD I ++ + G YVPG+
Sbjct: 19 NQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGW 78
Query: 497 DCHGMPIEIQ----IEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSY 552
DCHG+PIE++ +++ K L+PI+++ KA A + ++ Q+ F R G+ G+W+N Y
Sbjct: 79 DCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPY 138
Query: 553 KTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY-DFSIYVG 611
T+D EA ++ FG +F GY+Y G KPV+W ++ALAEAE+EY + + SIYV
Sbjct: 139 LTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVA 198
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHI------ 665
F P + S L+ G + IWT+TPWT+PAN A+ V+ + Y++V +
Sbjct: 199 FPVVSPSE-TSPEELEEFLPGLS-LAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSED 256
Query: 666 ----------------KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFH 709
K L LI+A +LV + K+G K ++ G L + H
Sbjct: 257 ESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIH 316
Query: 710 PLSNIDINYNRLSPIYL-GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768
PL YNR SP+ + GDYIT +SGTG+VH+AP +G ED++ K + +++PV
Sbjct: 317 PL------YNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLP---LLSPVD 367
Query: 769 DDGNFISTLPLFGGMSIWKA-SKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 827
D G F F G+S+ + + L ++ +L E + H Y + WR K P I+R T
Sbjct: 368 DAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRAT 427
Query: 828 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGV 887
QWF +++ R++A+ AI+K+K+ P+ G++R+++M+ R DW ISRQR WGV
Sbjct: 428 EQWFASVE--------GFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGV 479
Query: 888 PIAFFIHKKSGK--LHPKTLELI-ELIAKKIELNGIEIWQNLDIKEFL----GDDAVNYK 940
PI F H ++ + ++ +T+ + ++A+K G + W +D+++ L D A +Y+
Sbjct: 480 PIPVFYHVETKEPLMNEETIAHVKSIVAQK----GSDAWWYMDVEDLLPEKYRDKASDYE 535
Query: 941 KSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSA 1000
K DT+DVWFDSG + V+ ++ L +PADLYLEGSDQHRGWF SSLLTS+ A
Sbjct: 536 KGTDTMDVWFDSGSSWAGVLGS--REGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKA 593
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKP---------QKLCNLFGAEILRLWVASTDYS 1051
PYK++LTHGFV+D KG KMSKS GN++ P QK +GA++LRLWVAS DY+
Sbjct: 594 PYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYT 653
Query: 1052 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNL 1111
D+ I +IL ++ + YR++R TLR+LL N D+ P+ N + D+ IDKYA+ + N+
Sbjct: 654 GDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPD-NAVPYEDLPSIDKYALFQLENV 712
Query: 1112 QKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHI 1171
EI Y Y+F I LQ + DL +FYLD+ KDRLY S RRS QT +
Sbjct: 713 VNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAH 772
Query: 1172 NQSLLRLISPILSFTSEEAWS--IFSDKNFYIESGETIFTQLHYKLPKVYNS--KKLLYK 1227
SLLR I+PIL +E+AW F + + E++F + + S + +
Sbjct: 773 LLSLLRAIAPILPHLAEDAWQNLPFQEDG---SAAESVFEAGWPTPNEEWLSFPAEDVDF 829
Query: 1228 YMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDF-EILNEF------GEELKF 1280
+ +L ++R +V + LE R+ +IG+SL+A++ L + L E +EL+
Sbjct: 830 WSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAELCGASNGADELRR 889
Query: 1281 FLLTSSVSLFQIKNLSEECIIIKPSIYK--------------------KCNRCWHYQADV 1320
+TS V + SE+ Y KC RCW+Y V
Sbjct: 890 IFITSQVEVVS----SEDDETAACGSYTGEYVEGAGRVWVGVSRADGSKCERCWNYSPAV 945
Query: 1321 GERDDYPDLCNRCFN 1335
G D+P LC RC+
Sbjct: 946 GSFSDHPTLCERCYP 960
|
Length = 974 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 676 bits (1746), Expect = 0.0
Identities = 253/641 (39%), Positives = 356/641 (55%), Gaps = 46/641 (7%)
Query: 1578 GWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDG 1637
+ W E+ + + + +P F +HDGPP A G +HIGHA+NK LKDI++++ M G
Sbjct: 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQG 60
Query: 1638 FDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFM 1690
FD +VPG+D HG+P E ++EK G L + + K R E ++ + F
Sbjct: 61 FDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFK 120
Query: 1691 RLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 1750
RLG+ G+WD Y T+D EA R F + KG +Y G KPVNW +AL+EAE+EY
Sbjct: 121 RLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEY 180
Query: 1751 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 1810
K SI+V F ++ + +VIWT+TPWT+P N A+ V+PEF+Y
Sbjct: 181 KDVKGPSIHVAFPLADGKGA--------------SLVIWTTTPWTLPGNTAVAVNPEFNY 226
Query: 1811 ALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNR 1870
+ + + ILA L+KS KK G I+ +G +L + HP NR
Sbjct: 227 VKIRVTGE---YYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF------VNR 277
Query: 1871 LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLF 1930
PI DY+ ++ GTG VH APA+G +D+ + K+ N+ + INPV DDG + P F
Sbjct: 278 EIPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNL---EFINPVDDDGTYNEEAPEF 334
Query: 1931 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 1990
G+ +KA K I L + L IE EHSY HCWR TPIIYR T QWF+ M
Sbjct: 335 QGLKRFKARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN---- 390
Query: 1991 EKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKL 2050
L E+A+ A+ K++F P WG+ R + + N DW ISRQR WG PI + K +G++
Sbjct: 391 ----LAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEV 446
Query: 2051 HPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI 2110
+ + L EL+A + E GIE W + D K+ LG A ++ D LD WF SG + +
Sbjct: 447 YVRG-SLKELVAGREEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTL 505
Query: 2111 RGSHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG 2166
F PAD+ LEGSDQ RGWF+ ++ L SAPYK +L HG V D +G
Sbjct: 506 GYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQG 565
Query: 2167 KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSIS 2207
+KMSKS GN+I P + + +GA+ LRLW+AS+DY +D++ S
Sbjct: 566 RKMSKSLGNVIDPLDVIDKYGADALRLWLASSDYGRDINFS 606
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 661 bits (1707), Expect = 0.0
Identities = 251/627 (40%), Positives = 351/627 (55%), Gaps = 46/627 (7%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
++ +P F +HDGPP A G +HIGHA+NK LKDI++++ M GFD +VPG+D HG+
Sbjct: 15 SLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGL 74
Query: 502 PIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKT 554
P E ++EK G L + + K R E ++ + F RLG+ G+WD Y T
Sbjct: 75 PTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFT 134
Query: 555 MDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 614
+D EA R F + KG +Y G KPVNW +AL+EAE+EYK SI+V F
Sbjct: 135 LDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKGPSIHVAFPL 194
Query: 615 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 674
++ + +VIWT+TPWT+P N A+ V+PEF+Y + + + I
Sbjct: 195 ADGKGA--------------SLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGE---YYI 237
Query: 675 LAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS 734
LA L+KS KK G I+ +G +L + HP NR PI DY+ ++
Sbjct: 238 LAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF------VNREIPIIADDYVDMEF 291
Query: 735 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICS 794
GTG VH APA+G +D+ + K+ N+ + INPV DDG + P F G+ +KA K I
Sbjct: 292 GTGAVHIAPAHGEDDYEVGKRHNL---EFINPVDDDGTYNEEAPEFQGLKRFKARKKIVE 348
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
L + L IE EHSY HCWR TPIIYR T QWF+ M L E+A+ A+
Sbjct: 349 LLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN--------LAEAALKAVE 400
Query: 855 KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914
K++F P WG+ R + + N DW ISRQR WG PI + K +G+++ + L EL+A +
Sbjct: 401 KVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRG-SLKELVAGR 459
Query: 915 IELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF---- 970
E GIE W + D K+ LG A ++ D LD WF SG + + F
Sbjct: 460 EEEEGIEAWLHRDAKDLLGKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKRFF 519
Query: 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQ 1030
PAD+ LEGSDQ RGWF+ ++ L SAPYK +L HG V D +G+KMSKS GN+I P
Sbjct: 520 PADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPL 579
Query: 1031 KLCNLFGAEILRLWVASTDYSKDLSIS 1057
+ + +GA+ LRLW+AS+DY +D++ S
Sbjct: 580 DVIDKYGADALRLWLASSDYGRDINFS 606
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 503 bits (1298), Expect = e-153
Identities = 244/803 (30%), Positives = 395/803 (49%), Gaps = 79/803 (9%)
Query: 1571 ELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIV 1630
+ E +K W+E I+ + + P+F+ +DGPP ANG H GH + + +KD++
Sbjct: 12 DFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVP 71
Query: 1631 KFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG-KNLSPIE---IQN---KARALAYEKIE 1683
++ M G+ + G+D HG+P+E+++EK G IE I+ K R +
Sbjct: 72 RYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTD 131
Query: 1684 QQKMDFMRLGILGEWDNSYKTMDFLNEANE--LRAFGIIFKKGYVYHGLKPVNWCFDCKS 1741
+ + RLG ++DN YKT+D NE E A ++ KG +Y G + V +C C++
Sbjct: 132 EWEEYTERLGRWVDFDNPYKTLD--NEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCET 189
Query: 1742 ALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799
L+ E+ YK D S+YV F K+K Y++ WT+TPWT+P+N
Sbjct: 190 PLSNHEVAQGYKDVKDPSVYVKF------KLK--------GEENEYLLAWTTTPWTLPSN 235
Query: 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFH 1859
AL VHP+ DY V + + ILA L++ LK+ ++ KG +L + +
Sbjct: 236 LALAVHPDIDYVKVEGGGE---VYILAEALLEKVLKE---DYEVVETFKGSELEGLEYEP 289
Query: 1860 PLS--NIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917
P + N R + L D++T + GTGIVH APA+G +DF + KK + ++ PV
Sbjct: 290 PFPYFADEKNAFR---VVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGL---PVVCPV 343
Query: 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 1977
DDG F +P + G + A K I LK+ LF E +EHSY HCWR TP+IY T
Sbjct: 344 DDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYAT 403
Query: 1978 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWG 2036
WFI + KI ++ + KI ++P KD R + N DW ISR R+WG
Sbjct: 404 ESWFIRVTKI--------KDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWG 455
Query: 2037 VPIAFFIHKKSGKLH-PKTLELIELIAKKIELNGIEIWQNL------DIKEFLGDDAVNY 2089
P+ + + G++ ++E EL E +L ++ D
Sbjct: 456 TPLPIWRCEDCGRIDVIGSIE--ELEELFGEDVEPI---DLHRPYVDEVT-LPCPDGGTM 509
Query: 2090 KKSNDTLDVWFDSGI----THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII 2145
++ D +DVWFDSG + FPAD +EG DQ RGWF++ L S
Sbjct: 510 RRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTA 569
Query: 2146 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDL 2204
L PYK +L HG V+D G+KMSKS GN + P ++ + +GA+ LR ++ +S+ +DL
Sbjct: 570 LFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDL 629
Query: 2205 SISNEILNRVVETYRRIRNTL----RFLL--ANTSDFNPNINIIKISDMVEIDKYAIINI 2258
S + V E R+ TL F + AN F+ ++ + E+D++ + +
Sbjct: 630 RFSEDG---VREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRL 686
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSI 2318
+L KE+ Y+ ++ + +DL ++Y+ + R + ++ + +A ++
Sbjct: 687 NSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKE-EDDPDKLAAYATL 744
Query: 2319 WHINQSLLRLISPILSFTSEEAW 2341
+ + ++L RL +P F +EE +
Sbjct: 745 YTVLETLSRLAAPFTPFIAEEIY 767
|
Length = 975 |
| >gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-148
Identities = 240/781 (30%), Positives = 386/781 (49%), Gaps = 79/781 (10%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
I+ P+F+ +DGPP ANG H GH + + +KD++ ++ M G+ + G+D HG+P
Sbjct: 34 IENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLP 93
Query: 503 IEIQIEKLYG-KNLSPIE---IQN---KARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
+E+++EK G IE I+ K R ++ + RLG ++DN YKT+
Sbjct: 94 VELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTL 153
Query: 556 DFLNEANE--LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVG 611
D NE E A ++ KG +Y G + V +C C++ L+ E+ YK D S+YV
Sbjct: 154 D--NEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVK 211
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F K+K Y++ WT+TPWT+P+N AL VHP+ DY V +
Sbjct: 212 F------KLK--------GEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGE--- 254
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLS--NIDINYNRLSPIYLGDY 729
+ ILA L++ LK+ ++ KG +L + + P + N R + L D+
Sbjct: 255 VYILAEALLEKVLKE---DYEVVETFKGSELEGLEYEPPFPYFADEKNAFR---VVLADF 308
Query: 730 ITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKAS 789
+T + GTGIVH APA+G +DF + KK + ++ PV DDG F +P + G + A
Sbjct: 309 VTTEDGTGIVHIAPAFGEDDFEVGKKYGL---PVVCPVDDDGRFTEEVPDYAGKFVKDAD 365
Query: 790 KLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849
K I LK+ LF E +EHSY HCWR TP+IY T WFI + KI ++
Sbjct: 366 KEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKI--------KDRM 417
Query: 850 ITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PKTLEL 907
+ KI ++P KD R + N DW ISR R+WG P+ + + G++ ++E
Sbjct: 418 LELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIE- 476
Query: 908 IELIAKKIELNGIEIWQNL------DIKEFLGDDAVNYKKSNDTLDVWFDSGI----THQ 957
EL E +L ++ D ++ D +DVWFDSG
Sbjct: 477 -ELEELFGEDVEPI---DLHRPYVDEVT-LPCPDGGTMRRVPDVIDVWFDSGSMPYAQLH 531
Query: 958 TVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 1017
+ FPAD +EG DQ RGWF++ L S L PYK +L HG V+D G+
Sbjct: 532 YPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQ 591
Query: 1018 KMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISNEILNRVVETYRRIRNTL- 1075
KMSKS GN + P ++ + +GA+ LR ++ +S+ +DL S + V E R+ TL
Sbjct: 592 KMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDG---VREVVRKFLLTLW 648
Query: 1076 ---RFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130
F + AN F+ ++ + E+D++ + + +L KE+ Y+
Sbjct: 649 NVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARA 708
Query: 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 1190
++ + +DL ++Y+ + R + ++ + +A +++ + ++L RL +P F +EE
Sbjct: 709 IRDFV-DDLSNWYIRRSRRRFWKE-EDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEI 766
Query: 1191 W 1191
+
Sbjct: 767 Y 767
|
Length = 975 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 333 bits (855), Expect = 3e-96
Identities = 207/794 (26%), Positives = 354/794 (44%), Gaps = 124/794 (15%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W KKW+E + + ++P F + PP G +H+GHA+N L+DI+ ++ M
Sbjct: 11 EEKWYKKWEESGYFKPD--PNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGK-NLSPIEIQNKA-RALAYE-------KIEQQK 1686
G++ + PG D G+ ++ +EK ++ ++ + +E I +Q
Sbjct: 69 RGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQ- 127
Query: 1687 MDFMRLGILGEWDNSYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
RLG+ +W TMD L+ A E AF +++KG +Y G + VNWC C++A++
Sbjct: 128 --LRRLGVSVDWSRERFTMDPGLSRAVQE--AFVRLYEKGLIYRGERLVNWCPKCRTAIS 183
Query: 1745 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804
+ E+EYK+ Y+ + L + G GY+V+ T+ P T+ + A+ V
Sbjct: 184 DIEVEYKEVEGKLYYIKYP------------LAD---GDGYLVVATTRPETLLGDTAVAV 228
Query: 1805 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNI 1864
HP+ D +K +++G K + L PL
Sbjct: 229 HPD----------DER------------------YK-HLVG--KEVIL-------PLVGR 250
Query: 1865 DINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFI 1924
+I PI +Y+ + GTG V PA+ D+ + K+ N+ +IN + +DG
Sbjct: 251 EI------PIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNL---PLINIIDEDGRIN 301
Query: 1925 STLPL-FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFIN 1983
F G+ ++A K I L++ L IE +HS HC R TPI + QWF+
Sbjct: 302 EEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVK 361
Query: 1984 MDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI 2043
+ ++ K +++++ KIKF P + R + + N DW ISRQ WG I +
Sbjct: 362 VLELAKKALEAVKD------GKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWY 415
Query: 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSG 2103
K+ G + E + A + ++ D LD WF S
Sbjct: 416 CKECGNVVVAEEEPEDPAAAEK------------------CPKEELEQDEDVLDTWFSSS 457
Query: 2104 ITHQTVIRGSHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHG 2159
+ + + G ++ P DL + G D W ++ + L P+K + HG
Sbjct: 458 LWPFSTL-GWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHG 516
Query: 2160 FVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETY 2218
V D +G+KMSKSKGN+I P + + +GA+ LR +AS +D++ + VE Y
Sbjct: 517 LVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEK----RVEGY 572
Query: 2219 RR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEF 2274
R + N RF+L N D P + + + + D++ + + KE+ Y F
Sbjct: 573 RNFLNKLWNATRFVLMNLDDLGP--DDLDLLALSLADRWILSRLNETVKEVTEALDNYRF 630
Query: 2275 HMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILS 2334
L + D +YL++ K RLY ++ +R+A+ +++++ +LLRL+ P +
Sbjct: 631 DEAARALYEFIWNDFCDWYLELAKPRLYGGEE---EKRAARATLYYVLDTLLRLLHPFMP 687
Query: 2335 FTSEEAWSIFSDKN 2348
F +EE W
Sbjct: 688 FITEEIWQKLPGTE 701
|
Length = 877 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = 3e-91
Identities = 201/778 (25%), Positives = 347/778 (44%), Gaps = 122/778 (15%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
+ + ++P F + PP G +H+GHA+N L+DI+ ++ M G++ + PG D G+
Sbjct: 25 KPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84
Query: 502 PIEIQIEKLYGK-NLSPIEIQNKA-RALAYE-------KIEQQKMDFMRLGILGEWDNSY 552
++ +EK ++ ++ + +E I +Q RLG+ +W
Sbjct: 85 ATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQ---LRRLGVSVDWSRER 141
Query: 553 KTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610
TMD L+ A E AF +++KG +Y G + VNWC C++A+++ E+EYK+ Y+
Sbjct: 142 FTMDPGLSRAVQE--AFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYI 199
Query: 611 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPP 670
+ L + G GY+V+ T+ P T+ + A+ VHP+ D
Sbjct: 200 KYP------------LAD---GDGYLVVATTRPETLLGDTAVAVHPD----------DER 234
Query: 671 LLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 730
+K +++G K + L PL +I PI +Y+
Sbjct: 235 ------------------YK-HLVG--KEVIL-------PLVGREI------PIIADEYV 260
Query: 731 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-FGGMSIWKAS 789
+ GTG V PA+ D+ + K+ N+ +IN + +DG F G+ ++A
Sbjct: 261 DPEFGTGAVKITPAHDFNDYEVGKRHNL---PLINIIDEDGRINEEAAGEFAGLDRFEAR 317
Query: 790 KLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849
K I L++ L IE +HS HC R TPI + QWF+ + ++ K +++++
Sbjct: 318 KKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKD-- 375
Query: 850 ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIE 909
KIKF P + R + + N DW ISRQ WG I + K+ G + E +
Sbjct: 376 ----GKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPED 431
Query: 910 LIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI 969
A + ++ D LD WF S + + + G ++
Sbjct: 432 PAAAEK------------------CPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPD 472
Query: 970 F----PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN 1025
P DL + G D W ++ + L P+K + HG V D +G+KMSKSKGN
Sbjct: 473 LKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGN 532
Query: 1026 IIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRR----IRNTLRFLLA 1080
+I P + + +GA+ LR +AS +D++ + VE YR + N RF+L
Sbjct: 533 VIDPLDVIDKYGADALRFTLASLASPGRDINFDEK----RVEGYRNFLNKLWNATRFVLM 588
Query: 1081 NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLG 1140
N D P + + + + D++ + + KE+ Y F L + D
Sbjct: 589 NLDDLGP--DDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFC 646
Query: 1141 SFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN 1198
+YL++ K RLY ++ +R+A+ +++++ +LLRL+ P + F +EE W
Sbjct: 647 DWYLELAKPRLYGGEE---EKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTE 701
|
Length = 877 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = 9e-87
Identities = 206/792 (26%), Positives = 341/792 (43%), Gaps = 121/792 (15%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W KKW++ + + N+P F + PP G +HIGHA+N ++DII ++ M
Sbjct: 11 EKKWYKKWEKSGFFKPDGNS--NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDF 1689
G++ ++PG D G+ ++++EK G +L E + K E K
Sbjct: 69 KGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQI 128
Query: 1690 MRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 1748
RLG +W TMD L++A + AF +++KG +Y G VNW +A+++ E+
Sbjct: 129 KRLGASLDWSRERFTMDEGLSKAVKE-AFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEV 187
Query: 1749 EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEF 1808
EYK+ +Y I+ + L N K Y+V+ T+ P T+ + A+ VHPE
Sbjct: 188 EYKEV-KGKLY---------YIR--YPLAN--GSKDYLVVATTRPETMFGDTAVAVHPED 233
Query: 1809 D-YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDIN 1867
+ Y K + K PL
Sbjct: 234 ERY--------------------KHLIGKK-------------------VILPL------ 248
Query: 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL 1927
R PI +Y+ ++ GTG V PA+ D+ K+ N+ + IN + +DG
Sbjct: 249 TGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNL---EFINILDEDGLLNENA 305
Query: 1928 PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPI-IYRTTLQWFINMDK 1986
+ G++ ++A K I LK+ L IE H+ CWR T + + QWF+ ++K
Sbjct: 306 GKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSK-QWFVKVEK 364
Query: 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKK 2046
+ ++ E +IKF P + R + + N DW ISRQ WG I + K+
Sbjct: 365 LADKALEAAEE------GEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKE 418
Query: 2047 SGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 2106
G+++ E L + +V ++ D LD WF S +
Sbjct: 419 CGEVYVAKEEP------------------LPDDKTNTGPSVELEQDTDVLDTWFSSSLWP 460
Query: 2107 QTVIR-GSHKKQL--IFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVD 2163
+ + K L +P DL + G D W + S+ L P+K + HG V D
Sbjct: 461 FSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRD 520
Query: 2164 SKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIR 2222
+G+KMSKS GN+I P + +GA+ LR +AS D++ + VE+ R
Sbjct: 521 EQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWK----RVESARNFL 576
Query: 2223 NTL----RFLLANTSDFNPNINIIKISDMVE---IDKYAIINITNLQKEILSHYRMYEFH 2275
N L RF+L N SD ++ + D++ + + KE+ Y F
Sbjct: 577 NKLWNASRFVLMNLSD-----DLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFA 631
Query: 2276 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSF 2335
L + D +Y++++K RLY N +++A+ +++++ LRL+ P + F
Sbjct: 632 EAAKALYEFIWNDFCDWYIELVKYRLYN--GNEAEKKAARDTLYYVLDKALRLLHPFMPF 689
Query: 2336 TSEEAWSIFSDK 2347
+EE W F +
Sbjct: 690 ITEEIWQHFKEG 701
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 1e-83
Identities = 201/776 (25%), Positives = 334/776 (43%), Gaps = 119/776 (15%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
+ + N+P F + PP G +HIGHA+N ++DII ++ M G++ ++PG D G+
Sbjct: 25 KPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84
Query: 502 PIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
++++EK G +L E + K E K RLG +W TM
Sbjct: 85 ATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTM 144
Query: 556 D-FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 614
D L++A + AF +++KG +Y G VNW +A+++ E+EYK+ +Y
Sbjct: 145 DEGLSKAVKE-AFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEV-KGKLY----- 197
Query: 615 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD-YALVHIKNDPPLLL 673
I+ + L N K Y+V+ T+ P T+ + A+ VHPE + Y
Sbjct: 198 ----YIR--YPLAN--GSKDYLVVATTRPETMFGDTAVAVHPEDERY------------- 236
Query: 674 ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 733
K + K PL R PI +Y+ ++
Sbjct: 237 -------KHLIGKK-------------------VILPL------TGRKIPIIADEYVDME 264
Query: 734 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLIC 793
GTG V PA+ D+ K+ N+ + IN + +DG + G++ ++A K I
Sbjct: 265 FGTGAVKVTPAHDFNDYEWGKRHNL---EFINILDEDGLLNENAGKYQGLTRFEARKKIV 321
Query: 794 SYLKKSKTLFNIEMFEHSYMHCWRHKTPI-IYRTTLQWFINMDKIPKNEKKSLRESAITA 852
LK+ L IE H+ CWR T + + QWF+ ++K+ ++ E
Sbjct: 322 EDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSK-QWFVKVEKLADKALEAAEE----- 375
Query: 853 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912
+IKF P + R + + N DW ISRQ WG I + K+ G+++ E
Sbjct: 376 -GEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEP----- 429
Query: 913 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-GSHKKQL--I 969
L + +V ++ D LD WF S + + + K L
Sbjct: 430 -------------LPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKF 476
Query: 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP 1029
+P DL + G D W + S+ L P+K + HG V D +G+KMSKS GN+I P
Sbjct: 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDP 536
Query: 1030 QKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTL----RFLLANTSD 1084
+ +GA+ LR +AS D++ + VE+ R N L RF+L N SD
Sbjct: 537 LDVIEKYGADALRFTLASLVTPGDDINFDWK----RVESARNFLNKLWNASRFVLMNLSD 592
Query: 1085 FNPNINIIKISDMVE---IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141
++ + D++ + + KE+ Y F L + D
Sbjct: 593 -----DLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCD 647
Query: 1142 FYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197
+Y++++K RLY N +++A+ +++++ LRL+ P + F +EE W F +
Sbjct: 648 WYIELVKYRLYN--GNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 289 bits (743), Expect = 2e-82
Identities = 198/808 (24%), Positives = 335/808 (41%), Gaps = 152/808 (18%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W K W+E+ Y +P + + PP +G +HIGH + D I ++ M
Sbjct: 16 EEKWQKIWEEEGTYKFDP--DERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRM 73
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI---EIQNKARALAYEKIEQQKMDFMRL 1692
G++ + G+D +G+P E ++EK YG I E R L E ++ + + RL
Sbjct: 74 RGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRL 133
Query: 1693 GILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 1752
G+ +W Y+T+ ++F ++KKG +Y PV WC C++A+A+AE+EY++
Sbjct: 134 GLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRE 193
Query: 1753 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYAL 1812
+ Y+ F + G I I T+ P +PA
Sbjct: 194 REGKLNYIKFP---------------VEDG-EEIEIATTRPELLPA-------------- 223
Query: 1813 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL- 1871
C + HP D Y L
Sbjct: 224 ----------------------------------CVAV------VVHPD---DERYKHLV 240
Query: 1872 -----SPIYLGDYITV--------DSGTGIVHSAPAYG-IEDFLIFKKQNMKDSDIINPV 1917
P++ G + + D GTG V +G D +++ N+ II+
Sbjct: 241 GKTAIVPLF-GVEVPILADPLVDPDFGTGAVMIC-TFGDKTDVTWWRELNLPTRIIID-- 296
Query: 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 1977
+DG G++I +A K I LK L E +H+ C R TP+ T
Sbjct: 297 -EDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVT 355
Query: 1978 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMI--LNRPDWTISRQRHW 2035
QWFI + L+E + +I ++P + RL++ I LN DW ISRQR++
Sbjct: 356 RQWFIKV--------LDLKEELLERGKEINWYPEHMRVRLENWIEGLNW-DWCISRQRYF 406
Query: 2036 GVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL---------DIKEFLGDDA 2086
G PI + K G ++ + +L ++ ++ F G+
Sbjct: 407 GTPIPVWYCKDCGHP---------ILPDEEDLP-VDPTKDEPPGYKCPQCGSPGFEGET- 455
Query: 2087 VNYKKSNDTLDVWFDSGITHQTV---IRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTS 2143
D +D W S IT V R + +FP DL +G D R W ++L +
Sbjct: 456 -------DVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRA 508
Query: 2144 IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKD 2203
+L P+K ++ G V+D GKKMSKSKGN++ P++L +GA+ +R W AS D
Sbjct: 509 YLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSD 568
Query: 2204 LSISNEILNRVVETYRR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINIT 2259
+ V+ RR + N RF+L F+ + K + +D++ + +
Sbjct: 569 TPFDEK----QVKIGRRLLTKLWNASRFVLH----FSADPEPDKAEVLEPLDRWILAKLA 620
Query: 2260 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIW 2319
+ ++ Y+F + +++ + YL+++K R Y + ++SA+ +++
Sbjct: 621 KVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAY-GEDEEEEQKSARYTLY 679
Query: 2320 HINQSLLRLISPILSFTSEEAWSIFSDK 2347
+ +LLRL++P L F +EE WS
Sbjct: 680 TVLDTLLRLLAPFLPFITEEVWSWLYGG 707
|
Length = 800 |
| >gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 2e-79
Identities = 199/685 (29%), Positives = 311/685 (45%), Gaps = 120/685 (17%)
Query: 1574 KREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFY 1633
K+E + W E + K + P++I +DGPP+A G H GH + +KDI+ ++
Sbjct: 12 KQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQ 71
Query: 1634 NMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLG 1693
+M G G+DCHG+P+E +I+K G I+ + D +++G
Sbjct: 72 SMTGHHVTRRFGWDCHGLPVEYEIDKKLG-------IKRRD-------------DVLKMG 111
Query: 1694 I------------------------LGEW---DNSYKTMDFLNEANELRAFGIIFKKGYV 1726
I G W +N YKTMD + F +F+KG V
Sbjct: 112 IDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLV 171
Query: 1727 YHGLKPVNWCFDCKSALA--EAEIEYKKKYDFSIYVGFSF-SEPEKIKSIFNLKNLPSGK 1783
Y G K + + CK+ L+ EA + YK D ++ V F +P+
Sbjct: 172 YKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNAS------------ 219
Query: 1784 GYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC--LKKFGFKG 1841
V WT+TPWT+P+N AL V+P F Y V K + I+A + + + K KG
Sbjct: 220 --FVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVY-IVAESRLSALPTAKPKSKKG 276
Query: 1842 N----------IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL----GDYITVDSGTG 1887
+ ++ G L + PL + ++ S DY+T DSGTG
Sbjct: 277 SKPENAAEGYEVLAKVPGSSLVGKKY-EPLFDY---FSEFSDTAFRVVADDYVTDDSGTG 332
Query: 1888 IVHSAPAYGIEDFLIFKKQNM--KDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSY 1945
+VH APA+G +D+ + + K ++ PV DDG F + F G + A K I +
Sbjct: 333 VVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAA 392
Query: 1946 LKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK 2005
+K L HSY CWR TP+IYR WF+ +++I K L E+ NK
Sbjct: 393 IKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEI----KDRLLEN-----NK 443
Query: 2006 IKFF-PSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAK 2063
++ P + K+ R + + N DW +SR R WG P+ +I + + +I IA+
Sbjct: 444 QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDG-----EEVVVIGSIAE 498
Query: 2064 KIELNGIEIW-------QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-- 2114
+L+G+++ ++ I G + ++ +D D WF+SG I H
Sbjct: 499 LEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYI---HYP 555
Query: 2115 --KKQLI---FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKM 2169
K+L FPAD EG DQ RGWF++ ++ S L +K L+ +G V+ GKKM
Sbjct: 556 FENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKM 615
Query: 2170 SKSKGNIIKPQKLCNLFGAEILRLW 2194
SKS N P ++ + +GA+ LRL+
Sbjct: 616 SKSLKNYPDPNEVIDKYGADALRLY 640
|
Length = 1159 |
| >gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-78
Identities = 206/718 (28%), Positives = 322/718 (44%), Gaps = 142/718 (19%)
Query: 391 ELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWGEIKASINRP 450
E+ G + F ++EE ILSL I +T ++K + P
Sbjct: 1 EVCEGKDFSFPKQEEK--------ILSLWSEIDAFKT--------------QLKRTEGLP 38
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
++I +DGPP+A G H GH + +KDI+ ++ +M G G+DCHG+P+E +I+K
Sbjct: 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK 98
Query: 511 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI------------------------LG 546
G I+ + D +++GI G
Sbjct: 99 LG-------IKRRD-------------DVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTG 138
Query: 547 EW---DNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA--EAEIEYK 601
W +N YKTMD + F +F+KG VY G K + + CK+ L+ EA + YK
Sbjct: 139 RWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYK 198
Query: 602 KKYDFSIYVGFSF-SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 660
D ++ V F +P+ V WT+TPWT+P+N AL V+P F Y
Sbjct: 199 DVSDPAVMVSFPIVGDPDNAS--------------FVAWTTTPWTLPSNLALCVNPNFTY 244
Query: 661 ALVHIKNDPPLLLILAFNLVKSC--LKKFGFKGN----------IIGICKGIKLSKINFF 708
V K + I+A + + + K KG+ ++ G L +
Sbjct: 245 VKVRNKYTGKVY-IVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKY- 302
Query: 709 HPLSNIDINYNRLSPIYL----GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM--KDSD 762
PL + ++ S DY+T DSGTG+VH APA+G +D+ + + K +
Sbjct: 303 EPLFDY---FSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGN 359
Query: 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPI 822
+ PV DDG F + F G + A K I + +K L HSY CWR TP+
Sbjct: 360 LPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPL 419
Query: 823 IYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFF-PSWGKD-RLKSMILNRPDWTIS 880
IYR WF+ +++I K L E+ NK ++ P + K+ R + + N DW +S
Sbjct: 420 IYRAVPSWFVKVEEI----KDRLLEN-----NKQTYWVPDYVKEKRFHNWLENARDWAVS 470
Query: 881 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW-------QNLDIKEFLG 933
R R WG P+ +I + + +I IA+ +L+G+++ ++ I G
Sbjct: 471 RSRFWGTPLPIWISDDG-----EEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRG 525
Query: 934 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLI---FPADLYLEGSDQHRGWF 986
+ ++ +D D WF+SG I H K+L FPAD EG DQ RGWF
Sbjct: 526 PEFGVLRRVDDVFDCWFESGSMPYAYI---HYPFENKELFEKNFPADFVAEGLDQTRGWF 582
Query: 987 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 1044
++ ++ S L +K L+ +G V+ GKKMSKS N P ++ + +GA+ LRL+
Sbjct: 583 YTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLY 640
|
Length = 1159 |
| >gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 4e-77
Identities = 228/813 (28%), Positives = 376/813 (46%), Gaps = 101/813 (12%)
Query: 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDI 1628
N + + E +K W+ ++ K + N+ +I +DGPP+A G H GH + I+KD
Sbjct: 71 NPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDC 130
Query: 1629 IVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP------IEIQN-KARALAYEK 1681
+ +++ GF + G+DCHG+PIE +IEK N I++ N K R + +
Sbjct: 131 VTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKY 190
Query: 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 1741
+ R+G ++ N YKTMD + F ++K YVY K + + C +
Sbjct: 191 SNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNT 250
Query: 1742 ALA--EAEIEYKKKYDFSIYVGFSFSEP------------------EKIKSIFNLKN--- 1778
++ E + YK D SI + F EK ++N K
Sbjct: 251 PISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENS 310
Query: 1779 -----------LPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALV-HIKNDPPLLLILA 1826
+ I+ WT+TPWT+P+N AL V+ F Y + H+K++ ++I+
Sbjct: 311 NNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNR--VVIVG 368
Query: 1827 FNLVKSCLKKFGFKG---NIIGICKGIKLSKINFFHPLSNIDINYN---RLSPIYLGDYI 1880
++ +K+ + I+ KG +L + + +N YN R I D++
Sbjct: 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFV 428
Query: 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD---IINPVMDDGNFISTLPLFGGMSIWK 1937
T D+GTGIVH AP YG +DF + KK + D + I+P+ +G F + + + I +
Sbjct: 429 TDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKE 488
Query: 1938 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997
A +I LK L + HSY CWR TP+IYR WFI + N L +
Sbjct: 489 ADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRV----SNSTNELVK 544
Query: 1998 SA-----ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHP 2052
+ I A K K F +W KD DW ISR R+WG PI + +K
Sbjct: 545 NNETTYWIPAHIKEKKFHNWIKDA--------KDWCISRNRYWGTPIPIWADEKM----- 591
Query: 2053 KTLELIELIAKKIELNGIE--------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI 2104
+T+ +E I EL+G++ +++IK G K+ + D WF+SG
Sbjct: 592 ETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGS 651
Query: 2105 -----THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHG 2159
H IFPAD EG DQ RGWF++ L+ S +L AP+K L+ +G
Sbjct: 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNG 711
Query: 2160 FVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST--DYSKDLSISNEILNRVVET 2217
V+ S GKKMSK N P + + +GA+ LRL++ ++ +++L + +N VV++
Sbjct: 712 LVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS 771
Query: 2218 -----YRRIR----NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 2268
Y R R+ N F N + I +D + +D++ ++ +L K + +
Sbjct: 772 FILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNI-MDQWIFSSVQSLTKSVHTE 830
Query: 2269 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 2301
+ Y+ + ++ KL + E+L ++Y+ + +DR+
Sbjct: 831 MKAYKLYNVLPKLLQFI-ENLTNWYIRLNRDRM 862
|
Length = 1205 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 273 bits (702), Expect = 6e-77
Identities = 192/788 (24%), Positives = 327/788 (41%), Gaps = 150/788 (19%)
Query: 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 505
+P + + PP +G +HIGH + D I ++ M G++ + G+D +G+P E
Sbjct: 34 DERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTER 93
Query: 506 QIEKLYGKNLSPI---EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEAN 562
++EK YG I E R L E ++ + + RLG+ +W Y+T+
Sbjct: 94 KVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRI 153
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 622
++F ++KKG +Y PV WC C++A+A+AE+EY+++ Y+ F
Sbjct: 154 SQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFP--------- 204
Query: 623 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 682
+ G I I T+ P +PA
Sbjct: 205 ------VEDG-EEIEIATTRPELLPA---------------------------------- 223
Query: 683 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL------SPIYLGDYITV---- 732
C + HP D Y L P++ G + +
Sbjct: 224 --------------CVAV------VVHPD---DERYKHLVGKTAIVPLF-GVEVPILADP 259
Query: 733 ----DSGTGIVHSAPAYG-IEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWK 787
D GTG V +G D +++ N+ II+ +DG G++I +
Sbjct: 260 LVDPDFGTGAVMIC-TFGDKTDVTWWRELNLPTRIIID---EDGRMTEAAGKLAGLTIEE 315
Query: 788 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847
A K I LK L E +H+ C R TP+ T QWFI + L+E
Sbjct: 316 ARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKV--------LDLKE 367
Query: 848 SAITAINKIKFFPSWGKDRLKSMI--LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTL 905
+ +I ++P + RL++ I LN DW ISRQR++G PI + K G
Sbjct: 368 ELLERGKEINWYPEHMRVRLENWIEGLNW-DWCISRQRYFGTPIPVWYCKDCGHP----- 421
Query: 906 ELIELIAKKIELNGIEIWQNL---------DIKEFLGDDAVNYKKSNDTLDVWFDSGITH 956
++ + +L ++ ++ F G+ D +D W S IT
Sbjct: 422 ----ILPDEEDLP-VDPTKDEPPGYKCPQCGSPGFEGET--------DVMDTWATSSITP 468
Query: 957 QTV---IRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVD 1013
V R + +FP DL +G D R W ++L + +L P+K ++ G V+D
Sbjct: 469 LIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLD 528
Query: 1014 SKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRR--- 1070
GKKMSKSKGN++ P++L +GA+ +R W AS D + V+ RR
Sbjct: 529 PDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEK----QVKIGRRLLT 584
Query: 1071 -IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 1129
+ N RF+L F+ + K + +D++ + + + ++ Y+F +
Sbjct: 585 KLWNASRFVLH----FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALE 640
Query: 1130 KLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 1189
+++ + YL+++K R Y + ++SA+ +++ + +LLRL++P L F +EE
Sbjct: 641 EIESFFWHVFCDDYLELVKSRAY-GEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEE 699
Query: 1190 AWSIFSDK 1197
WS
Sbjct: 700 VWSWLYGG 707
|
Length = 800 |
| >gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 4e-76
Identities = 224/788 (28%), Positives = 366/788 (46%), Gaps = 101/788 (12%)
Query: 444 KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 503
K + N+ +I +DGPP+A G H GH + I+KD + +++ GF + G+DCHG+PI
Sbjct: 96 KLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPI 155
Query: 504 EIQIEKLYGKNLSP------IEIQN-KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD 556
E +IEK N I++ N K R + + + R+G ++ N YKTMD
Sbjct: 156 EYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMD 215
Query: 557 FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA--EAEIEYKKKYDFSIYVGFSF 614
+ F ++K YVY K + + C + ++ E + YK D SI + F
Sbjct: 216 KTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVL 275
Query: 615 SEP------------------EKIKSIFNLKN--------------LPSGKGYIVIWTST 642
EK ++N K + I+ WT+T
Sbjct: 276 CSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTT 335
Query: 643 PWTIPANQALHVHPEFDYALV-HIKNDPPLLLILAFNLVKSCLKKFGFKG---NIIGICK 698
PWT+P+N AL V+ F Y + H+K++ ++I+ ++ +K+ + I+ K
Sbjct: 336 PWTLPSNLALCVNEHFTYLRIHHVKSNR--VVIVGECRLEWIMKELKWNVEDLKIVNRFK 393
Query: 699 GIKLSKINFFHPLSNIDINYN---RLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK 755
G +L + + +N YN R I D++T D+GTGIVH AP YG +DF + KK
Sbjct: 394 GKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKK 453
Query: 756 QNMKDSD---IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 812
+ D + I+P+ +G F + + + I +A +I LK L + HSY
Sbjct: 454 NGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSY 513
Query: 813 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA-----ITAINKIKFFPSWGKDRL 867
CWR TP+IYR WFI + N L ++ I A K K F +W KD
Sbjct: 514 PFCWRSDTPLIYRAIPAWFIRV----SNSTNELVKNNETTYWIPAHIKEKKFHNWIKDA- 568
Query: 868 KSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE------ 921
DW ISR R+WG PI + +K +T+ +E I EL+G++
Sbjct: 569 -------KDWCISRNRYWGTPIPIWADEKM-----ETVICVESIKHLEELSGVKNINDLH 616
Query: 922 --IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI-----THQTVIRGSHKKQLIFPADL 974
+++IK G K+ + D WF+SG H IFPAD
Sbjct: 617 RHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADF 676
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 1034
EG DQ RGWF++ L+ S +L AP+K L+ +G V+ S GKKMSK N P + +
Sbjct: 677 IAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD 736
Query: 1035 LFGAEILRLWVAST--DYSKDLSISNEILNRVVET-----YRRIR----NTLRFLLANTS 1083
+GA+ LRL++ ++ +++L + +N VV++ Y R R+ N
Sbjct: 737 KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKK 796
Query: 1084 DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143
F N + I +D + +D++ ++ +L K + + + Y+ + ++ KL + E+L ++Y
Sbjct: 797 QFLFNTDYIYKNDNI-MDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFI-ENLTNWY 854
Query: 1144 LDILKDRL 1151
+ + +DR+
Sbjct: 855 IRLNRDRM 862
|
Length = 1205 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 3e-74
Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 49/240 (20%)
Query: 821 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTIS 880
P+IYR T QWFI + KI ++ + A +K+ + P W K+R + + NR DW IS
Sbjct: 144 PLIYRATPQWFIRVTKI--------KDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCIS 195
Query: 881 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYK 940
RQR+WG PI + + G E++ +++
Sbjct: 196 RQRYWGTPIPVWYCEDCG----------EVLVRRVP------------------------ 221
Query: 941 KSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 997
D LDVWFDSG + + + +FPAD LEGSDQ RGWF+S LL S L
Sbjct: 222 ---DVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF 278
Query: 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD-YSKDLSI 1056
APYK ++ HGFV+D G+KMSKS GN + PQ++ + +GA+ LRLWVAS+D Y++DL
Sbjct: 279 GKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 3e-74
Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 49/240 (20%)
Query: 1971 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTIS 2030
P+IYR T QWFI + KI ++ + A +K+ + P W K+R + + NR DW IS
Sbjct: 144 PLIYRATPQWFIRVTKI--------KDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCIS 195
Query: 2031 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYK 2090
RQR+WG PI + + G E++ +++
Sbjct: 196 RQRYWGTPIPVWYCEDCG----------EVLVRRVP------------------------ 221
Query: 2091 KSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 2147
D LDVWFDSG + + + +FPAD LEGSDQ RGWF+S LL S L
Sbjct: 222 ---DVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF 278
Query: 2148 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD-YSKDLSI 2206
APYK ++ HGFV+D G+KMSKS GN + PQ++ + +GA+ LRLWVAS+D Y++DL
Sbjct: 279 GKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|236959 PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 2e-71
Identities = 96/248 (38%), Positives = 142/248 (57%), Gaps = 21/248 (8%)
Query: 204 MLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKKI 261
M R + + G+ L L +HL VLR+K + + LF+G GGEY+A++ I KK++
Sbjct: 1 MPRLF--VLLAAGETLILDGEEAHHLVRVLRLKEGDELRLFDGDGGEYLAEITEIGKKEV 58
Query: 262 LIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNE 321
++I+ L E E P +TL QALP+ + +LI++K+ ELGV I P+I+ R +++L+ E
Sbjct: 59 ELEILEKLELEPEPPLRLTLAQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGE 118
Query: 322 RIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLIS-----KISCARILLSPRGRK 376
R KK RW+ I I A EQSGR +P + P I +L + +++L P
Sbjct: 119 RADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKEFLEELLPADLKAGLKLVLHPE--- 175
Query: 377 KLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
+ +V LLIGPEGGF+ +E L E G +SLG RILRTETA+L ALA L
Sbjct: 176 ---------AGGKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAAL 226
Query: 437 NGVWGEIK 444
+ G++
Sbjct: 227 QALLGDLG 234
|
Length = 234 |
| >gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 1e-66
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115
IS+EIL +V E YR+IRNT RFLL N +DF+P + + +++E+D+YA+ + L KE+
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 1116 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 1175
Y YEFH + L +C+ DL +FYLDI+KDRLY K+S RRSAQT ++HI +L
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 1176 LRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIR 1235
L+L++PIL FT+EE W + E++F + +LP+ + ++L K+ L +R
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGEKKE----ESVFLEDWPELPEEWKDEELEEKWEKLLALR 176
Query: 1236 SKV 1238
+V
Sbjct: 177 DEV 179
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 180 |
| >gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 1e-66
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265
IS+EIL +V E YR+IRNT RFLL N +DF+P + + +++E+D+YA+ + L KE+
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 2266 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 2325
Y YEFH + L +C+ DL +FYLDI+KDRLY K+S RRSAQT ++HI +L
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 2326 LRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIR 2385
L+L++PIL FT+EE W + E++F + +LP+ + ++L K+ L +R
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGEKKE----ESVFLEDWPELPEEWKDEELEEKWEKLLALR 176
Query: 2386 SKV 2388
+V
Sbjct: 177 DEV 179
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 180 |
| >gnl|CDD|218092 pfam04452, Methyltrans_RNA, RNA methyltransferase | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 1e-66
Identities = 96/224 (42%), Positives = 133/224 (59%), Gaps = 6/224 (2%)
Query: 219 LYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKKILIQIISFLFREIELP 276
+ L D +HL VLR+K + I LF+G GGEY+A++ I KK +L++I+ L ELP
Sbjct: 1 VTLTDEEAHHLVRVLRLKEGDEIKLFDGDGGEYLAEIEEISKKSVLVKILEKLEVNKELP 60
Query: 277 YTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIIS 336
ITL QALP+ + +LI++K+ ELGV I P+I+ R +++ + +R KK RW+ I I
Sbjct: 61 LKITLAQALPKGDRLELILQKATELGVDAIVPLISERSVVK-DGKRADKKLERWQKIAIE 119
Query: 337 ATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK---LSCWANNQSPQEVELL 393
A EQSGR LP + P I F L +++L K LS + +V L+
Sbjct: 120 AAEQSGRTRLPEVLPPISFKELLEELDEADKLILYEEEAKSLGPLSELLASLKGGKVLLI 179
Query: 394 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
IGPEGGF+ KE L E G +SLG RILRTETA+L AL+ L
Sbjct: 180 IGPEGGFSPKEIELLKEAGFTPVSLGPRILRTETAALAALSALQ 223
|
RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation. Length = 224 |
| >gnl|CDD|224303 COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 2e-63
Identities = 95/246 (38%), Positives = 143/246 (58%), Gaps = 7/246 (2%)
Query: 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKK 260
+M R + G + L + +HL VLR+K + + LF+G GGE++A++ I KK+
Sbjct: 2 RMPRLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEITKIGKKE 61
Query: 261 ILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNN 320
L++I+ L ELP ITL QA+P+ K +LII+K+ ELGV I P+IT R +++L+
Sbjct: 62 ALLKIVEQLEPNPELPLKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDG 121
Query: 321 ERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL--ISKISCARILLSPRGRKKL 378
++ K RW+ I I A EQSGRN++P + P L I +++ + ++ L
Sbjct: 122 KKAAKLE-RWQKIAIEAAEQSGRNVVPEIKPPESLKELLKEIDDEDALKLIYEEKAKEGL 180
Query: 379 SCWANNQS--PQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAIL 436
++ +V L+IGPEGGF+E E L E G +SLG RILRTETA+L ALA L
Sbjct: 181 LALPLLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTETAALAALAAL 240
Query: 437 NGVWGE 442
+ G+
Sbjct: 241 QALLGD 246
|
Length = 246 |
| >gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 2e-56
Identities = 192/805 (23%), Positives = 330/805 (40%), Gaps = 136/805 (16%)
Query: 1571 ELSKR------EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKI 1624
EL+K E W WQE+ +H + RP F + PP G +H+GHA+
Sbjct: 14 ELAKGYEHREVEARWYPFWQERGYFHG-DEHDRTRPPFSIVLPPPNVTGSLHLGHALTAT 72
Query: 1625 LKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNK---ARALAYEK 1681
L+D+++++ M GF+ ++PG D G+ ++ +E K L E +++ R E+
Sbjct: 73 LQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVE----KELKKTEKKSRHDLGREAFLER 128
Query: 1682 IEQQKMDF-MRLG----ILG---EWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 1733
+ K + R+G LG +W TMD F + ++G +Y K +
Sbjct: 129 VWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLI 188
Query: 1734 NWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTP 1793
NWC DC++AL++ E+E+++ + ++ SF+ P L G G IV+ T+ P
Sbjct: 189 NWCPDCRTALSDLEVEHEEAHQGELW---SFAYP-----------LADGSGEIVVATTRP 234
Query: 1794 WTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLS 1853
T+ + A+ VHP DP + + +
Sbjct: 235 ETMLGDTAVAVHPL----------DPRYMALHGKKVR----------------------- 261
Query: 1854 KINFFHPLSNIDINYNRLSPIYLGDYITVDS--GTGIVHSAPAYGIEDFLIFKKQNMKDS 1911
HP++ R PI + D I VD GTG V PA+ DF + K+ ++
Sbjct: 262 -----HPIT------GRTFPI-VADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMI 309
Query: 1912 DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTP 1971
+I P DG + G+ ++A K + L + + C R T
Sbjct: 310 TVIGP---DGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATI 366
Query: 1972 IIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFP-SWGKDRLKSMILNRPDWT 2028
+ + QW++ ++ + + AI A+ + +F P W + M N DW
Sbjct: 367 LEPLLSDQWYVRIEPLAR--------PAIEAVEQGRTRFIPEQWTNTYMAWM-RNIHDWC 417
Query: 2029 ISRQRHWGVPI-AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAV 2087
ISRQ WG I A++ + +T E K E D+
Sbjct: 418 ISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGK---------------AELRQDE-- 460
Query: 2088 NYKKSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144
D LD WF SG+ + + + + +P + G D W ++ +
Sbjct: 461 ------DVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGL 514
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKD 2203
P++ + H V D KG+KMSK+KGN+I P + +GA+ LR +A+ T +D
Sbjct: 515 HFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRD 574
Query: 2204 LSISNEILNRVVETYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINIT 2259
+ ++ E +E YR N L RF L N S + D++ + +
Sbjct: 575 IKLAKE----RIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQ 630
Query: 2260 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIW 2319
E + + F+ + + + +L +Y+++ K+ L + + ARRS Q +
Sbjct: 631 RAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE--DPEARRSVQAVLV 688
Query: 2320 HINQSLLRLISPILSFTSEEAWSIF 2344
H Q+ RL+ P + F +EE W +
Sbjct: 689 HCLQTSYRLLHPFMPFITEELWHVL 713
|
Length = 1052 |
| >gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 6e-54
Identities = 183/772 (23%), Positives = 317/772 (41%), Gaps = 129/772 (16%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
RP F + PP G +H+GHA+ L+D+++++ M GF+ ++PG D G+ ++ +
Sbjct: 46 TRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIV 105
Query: 508 EKLYGKNLSPIEIQNK---ARALAYEKIEQQKMDF-MRLG----ILG---EWDNSYKTMD 556
EK L E +++ R E++ K + R+G LG +W TMD
Sbjct: 106 EK----ELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMD 161
Query: 557 FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSE 616
F + ++G +Y K +NWC DC++AL++ E+E+++ + ++ SF+
Sbjct: 162 EGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELW---SFAY 218
Query: 617 PEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILA 676
P L G G IV+ T+ P T+ + A+ VHP DP + +
Sbjct: 219 P-----------LADGSGEIVVATTRPETMLGDTAVAVHPL----------DPRYMALHG 257
Query: 677 FNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS-- 734
+ HP++ R PI + D I VD
Sbjct: 258 KKVR----------------------------HPITG------RTFPI-VADAILVDPKF 282
Query: 735 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICS 794
GTG V PA+ DF + K+ ++ +I P DG + G+ ++A K +
Sbjct: 283 GTGAVKVTPAHDFNDFEVGKRHGLEMITVIGP---DGRMTAEAGPLAGLDRFEARKEVKR 339
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
L + + C R T + + QW++ ++ + + AI A+
Sbjct: 340 LLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLAR--------PAIEAVE 391
Query: 855 --KIKFFP-SWGKDRLKSMILNRPDWTISRQRHWGVPI-AFFIHKKSGKLHPKTLELIEL 910
+ +F P W + M N DW ISRQ WG I A++ + +T E
Sbjct: 392 QGRTRFIPEQWTNTYMAWM-RNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACST 450
Query: 911 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI---RGSHKKQ 967
K E D+ D LD WF SG+ + + + +
Sbjct: 451 CGKA---------------ELRQDE--------DVLDTWFSSGLWPFSTMGWPEQTDTLR 487
Query: 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027
+P + G D W ++ + P++ + H V D KG+KMSK+KGN+I
Sbjct: 488 TFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVI 547
Query: 1028 KPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTL----RFLLANT 1082
P + +GA+ LR +A+ T +D+ ++ E +E YR N L RF L N
Sbjct: 548 DPLVITEQYGADALRFTLAALTAQGRDIKLAKE----RIEGYRAFANKLWNASRFALMNL 603
Query: 1083 SDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
S + D++ + + E + + F+ + + + +L +
Sbjct: 604 SGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDW 663
Query: 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194
Y+++ K+ L + + ARRS Q + H Q+ RL+ P + F +EE W +
Sbjct: 664 YIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVL 713
|
Length = 1052 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 2e-53
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
Query: 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
P+F+ HDGPPYANG H GHA+NKILKDII ++ M G+ PG+DCHG+PIE+++EK
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 510 LYG-------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEAN 562
G + + E K R A +++Q+ F RLG+ +W+N YKTMD +
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMES 120
Query: 563 ELRAFGIIFKKGYVYHGLKPVNW 585
F + +KG +Y G K V W
Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 2e-53
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
Query: 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
P+F+ HDGPPYANG H GHA+NKILKDII ++ M G+ PG+DCHG+PIE+++EK
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 1660 LYG-------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEAN 1712
G + + E K R A +++Q+ F RLG+ +W+N YKTMD +
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMES 120
Query: 1713 ELRAFGIIFKKGYVYHGLKPVNW 1735
F + +KG +Y G K V W
Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 2e-49
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 56 RAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+ALR +L NYR
Sbjct: 23 LAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLL- 81
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGV 175
+ +YVTLEPC MCAGA++H R+G +++G KTGA GS++++ +NH +T GV
Sbjct: 82 DATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGV 141
Query: 176 MQKQCEKLLKSFFIKRR 192
+ +C LL FF RR
Sbjct: 142 LADECAALLSDFFRMRR 158
|
Length = 172 |
| >gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 3e-49
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNN-LVISYGYNQQITRNDPTAHAEII 99
L E D ++ AK A GEVPVGAV+V + +I+ G+N++ NDPTAHAEI+
Sbjct: 3 FLSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEIL 62
Query: 100 ALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINL 159
A+R A++ L NYR K+ +YVTLEPC MCAGAII R+ ++YG KTGA GS++++
Sbjct: 63 AIRAAAETLGNYRL-KDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDI 121
Query: 160 FQEKKLNHHTILTGGVMQKQCEKLLKSFF 188
++ +LNH + GG+++++C LL FF
Sbjct: 122 LKDPRLNHRVEVYGGILEEECSALLSEFF 150
|
Length = 152 |
| >gnl|CDD|218092 pfam04452, Methyltrans_RNA, RNA methyltransferase | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 3e-48
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
QALP+ + +LI++K+ ELGV I P+I+ R +++ + +R KK RW+ I I A EQS
Sbjct: 66 AQALPKGDRLELILQKATELGVDAIVPLISERSVVK-DGKRADKKLERWQKIAIEAAEQS 124
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK---LSCWANNQSPQEVELLIGPEG 1530
GR LP + P I F L +++L K LS + +V L+IGPEG
Sbjct: 125 GRTRLPEVLPPISFKELLEELDEADKLILYEEEAKSLGPLSELLASLKGGKVLLIIGPEG 184
Query: 1531 GFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
GF+ KE L E G +SLG RILRTETA+L AL+ L
Sbjct: 185 GFSPKEIELLKEAGFTPVSLGPRILRTETAALAALSALQ 223
|
RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation. Length = 224 |
| >gnl|CDD|236959 PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 3e-47
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 17/161 (10%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
QALP+ + +LI++K+ ELGV I P+I+ R +++L+ ER KK RW+ I I A EQS
Sbjct: 79 AQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQS 138
Query: 1474 GRNILPVLAPNIYFNNWLIS-----KISCARILLSPRGRKKLSCWANNQSPQEVELLIGP 1528
GR +P + P I +L + +++L P + +V LLIGP
Sbjct: 139 GRTRIPEVRPPISLKEFLEELLPADLKAGLKLVLHPE------------AGGKVLLLIGP 186
Query: 1529 EGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
EGGF+ +E L E G +SLG RILRTETA+L ALA L
Sbjct: 187 EGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAALQ 227
|
Length = 234 |
| >gnl|CDD|129157 TIGR00046, TIGR00046, RNA methyltransferase, RsmE family | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 9e-43
Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 5/237 (2%)
Query: 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK- 260
+M Y+P + + L + +HL VLR+K + + L +G G Y ++ I KK
Sbjct: 1 RMRIVYHPEQ-LEEATISLTEEEAHHLVRVLRLKKGDKLKLLDGDGFIYHCEIKKISKKF 59
Query: 261 ILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNN 320
+ +++ + ELP I L L + +K + II K ELGV I P R +++L+
Sbjct: 60 VKCELLEGESEKRELPLKIHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDI 119
Query: 321 ERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSC 380
E IKK RW+ I I A EQSGRNI+P + P ++ + L+
Sbjct: 120 E-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKC-AEAYEEALKLNFHPEASPLS 177
Query: 381 WANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
+ ++IGPEGGF+EKE L E G + LG RILRTETA L AL+IL
Sbjct: 178 ANLPIPAGNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYALSILQ 234
|
Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 240 |
| >gnl|CDD|224303 COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-42
Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
QA+P+ K +LII+K+ ELGV I P+IT R +++L+ ++ K RW+ I I A EQS
Sbjct: 83 AQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLE-RWQKIAIEAAEQS 141
Query: 1474 GRNILPVLAPNIYFNNWL--ISKISCARILLSPRGRKKLSCWANNQS--PQEVELLIGPE 1529
GRN++P + P L I +++ + ++ L ++ +V L+IGPE
Sbjct: 142 GRNVVPEIKPPESLKELLKEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPE 201
Query: 1530 GGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGELS 1573
GGF+E E L E G +SLG RILRTETA+L ALA L L
Sbjct: 202 GGFSEDEIELLREAGFTPVSLGPRILRTETAALAALAALQALLG 245
|
Length = 246 |
| >gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-41
Identities = 178/801 (22%), Positives = 330/801 (41%), Gaps = 130/801 (16%)
Query: 1580 IKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFD 1639
I W E + Y + P F++ PP G +H+GHA+ L+DI+V++ M G
Sbjct: 69 IYNWWESQGYFKPNFDRGGDP-FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRP 127
Query: 1640 AQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDF--------MR 1691
++PG D G+ ++ +EK+ I+ + R +++ + K + R
Sbjct: 128 TLWIPGTDHAGIATQLVVEKMLAS--EGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKR 185
Query: 1692 LGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK 1751
LG +W T+D + AF + +KG +Y G VNW + ++A+++ E+EY
Sbjct: 186 LGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 245
Query: 1752 KKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYA 1811
++ Y+ + + + ++ I T+ P T+ + A+ V+PE D
Sbjct: 246 EEPGTLYYIKYRVAG--------------GSEDFLTIATTRPETLFGDVAIAVNPEDD-- 289
Query: 1812 LVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 1871
+ SK + ++ + + Y R
Sbjct: 290 ---------------------------------------RYSK--YIGKMAIVPMTYGRH 308
Query: 1872 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFG 1931
PI Y+ D GTG++ +P + D+L+ +K + I+N + DG TL
Sbjct: 309 VPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLP---ILNVMNKDG----TLNEVA 361
Query: 1932 GMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNE 1991
G+ ++A + + S L+++ E R I + QWF+ M+ + +
Sbjct: 362 GLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKA 421
Query: 1992 KKSLRESAITAINKI--KFFPSWGKDRLKSMILNRPDWTISRQRHWG--VPIAFFIHKKS 2047
K++ +T I + K + W + N DW ISRQ WG +P+ + + K
Sbjct: 422 LKAVENGELTIIPERFEKIYNHW--------LSNIKDWCISRQLWWGHRIPVWYIVGKDC 473
Query: 2048 GKLHPKTLELIELIAKKIELNG--IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGIT 2105
+ + E + K E G +EI+Q+ D+ LD WF S +
Sbjct: 474 EEDYIVARSAEEALEKAREKYGKDVEIYQDPDV-----------------LDTWFSSALW 516
Query: 2106 HQTVI----RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFV 2161
+ + + + +P + G D W ++ I + P+ + HG +
Sbjct: 517 PFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLI 576
Query: 2162 VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRI 2221
DS+G+KMSK+ GN+I P FG + LR +A +DL++S E L ++
Sbjct: 577 RDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKL 636
Query: 2222 RNTLRFLLAN---TSDFNPNINIIKISDMVEIDK------------YAIINITNLQKEIL 2266
N +F+L N SD + +I+ + DK + + + L +
Sbjct: 637 WNAGKFVLQNLPSQSDTSAWEHILAC----KFDKEESLLSLPLPECWVVSKLHELIDSVT 692
Query: 2267 SHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLL 2326
+ Y Y F + ++ + D +Y++ K RLY + NS R AQ + ++ +++L
Sbjct: 693 TSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSR-AQAVLLYVFENIL 751
Query: 2327 RLISPILSFTSEEAWSIFSDK 2347
+L+ P + F +EE W +
Sbjct: 752 KLLHPFMPFVTEELWQALPYR 772
|
Length = 958 |
| >gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 3e-41
Identities = 173/779 (22%), Positives = 323/779 (41%), Gaps = 129/779 (16%)
Query: 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY 511
F++ PP G +H+GHA+ L+DI+V++ M G ++PG D G+ ++ +EK+
Sbjct: 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKML 149
Query: 512 GKNLSPIEIQNKARALAYEKIEQQKMDF--------MRLGILGEWDNSYKTMDFLNEANE 563
I+ + R +++ + K + RLG +W T+D
Sbjct: 150 AS--EGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAV 207
Query: 564 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSI 623
+ AF + +KG +Y G VNW + ++A+++ E+EY ++ Y+ + +
Sbjct: 208 VEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------- 260
Query: 624 FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683
+ ++ I T+ P T+ + A+ V+PE D
Sbjct: 261 -------GSEDFLTIATTRPETLFGDVAIAVNPEDD------------------------ 289
Query: 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAP 743
+ SK + ++ + + Y R PI Y+ D GTG++ +P
Sbjct: 290 -----------------RYSK--YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISP 330
Query: 744 AYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLF 803
+ D+L+ +K + I+N + DG TL G+ ++A + + S L+++
Sbjct: 331 GHDHNDYLLARKLGLP---ILNVMNKDG----TLNEVAGLYWFEAREKLWSDLEETGLAV 383
Query: 804 NIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKI--KFFPS 861
E R I + QWF+ M+ + + K++ +T I + K +
Sbjct: 384 KKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNH 443
Query: 862 WGKDRLKSMILNRPDWTISRQRHWG--VPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919
W + N DW ISRQ WG +P+ + + K + + E + K E G
Sbjct: 444 W--------LSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYG 495
Query: 920 --IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI----RGSHKKQLIFPAD 973
+EI+Q+ D+ LD WF S + + + + + +P
Sbjct: 496 KDVEIYQDPDV-----------------LDTWFSSALWPFSTLGWPDVSAEDFKKFYPTT 538
Query: 974 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLC 1033
+ G D W ++ I + P+ + HG + DS+G+KMSK+ GN+I P
Sbjct: 539 VLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTI 598
Query: 1034 NLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLAN---TSDFNPNIN 1090
FG + LR +A +DL++S E L ++ N +F+L N SD + +
Sbjct: 599 KEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEH 658
Query: 1091 IIKISDMVEIDK------------YAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 1138
I+ + DK + + + L + + Y Y F + ++ + D
Sbjct: 659 ILAC----KFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSD 714
Query: 1139 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197
+Y++ K RLY + NS R AQ + ++ +++L+L+ P + F +EE W +
Sbjct: 715 FADWYIEASKTRLYHSGDNSALSR-AQAVLLYVFENILKLLHPFMPFVTEELWQALPYR 772
|
Length = 958 |
| >gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-40
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNL-VISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
A+ AL GEVP GAV+V ++ VI+ G+N+ DPTAHAEI+A+R A++ L +Y S
Sbjct: 8 ARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLS- 66
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 158
+Y TLEPC MCAGA++ R+ ++YG K G G +I
Sbjct: 67 GCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFLIE 109
|
These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109 |
| >gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 4e-40
Identities = 211/900 (23%), Positives = 351/900 (39%), Gaps = 176/900 (19%)
Query: 1576 EPGWIKKWQEKKIYH--QIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFY 1633
E GW + W++ + + K+ + KF++ PP G +HIGHA+ ++D +++++
Sbjct: 34 ESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYH 93
Query: 1634 NMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR-ALAYEKIEQQKMDFM-- 1690
M G + +VPG D G+ ++ +EK K +NK R L E+ ++ ++
Sbjct: 94 RMKGDETLWVPGTDHAGIATQVVVEKKLMKE------ENKTRHDLGREEFLKKVWEWKDK 147
Query: 1691 ----------RLGILGEWDNSYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFD 1738
RLG +W TMD ++A E AF +++ G +Y + VNWC
Sbjct: 148 HGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKE--AFVRLYEDGLIYRDTRLVNWCCY 205
Query: 1739 CKSALAEAEIE--------------YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKG 1784
K+A+++ E+E Y KK + + F++ ++ SG+
Sbjct: 206 LKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAY----PLED--------SGQE 253
Query: 1785 YIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII 1844
IV+ T+ T+ + A+ VHP D +K +
Sbjct: 254 EIVVATTRIETMLGDVAVAVHP----------KDER------------------YK-KLH 284
Query: 1845 GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS--GTGIVHSAPAYGIEDFLI 1902
G K + HP +R PI D VD GTG V PA+ D+ I
Sbjct: 285 G--KELI-------HPFIP-----DRKIPIIA-DDELVDMEFGTGAVKITPAHDPNDYEI 329
Query: 1903 FKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962
K+ N+ IN DG F GM + + I LK+ L +
Sbjct: 330 AKRHNLP---FINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRL 386
Query: 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMIL 2022
C R + QW++N + K +++R ++K PS ++ +
Sbjct: 387 PRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRN------GELKIIPSSHENVWYHWLE 440
Query: 2023 NRPDWTISRQRHWGVPI-AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEF 2081
N DW ISRQ WG I A+ + K + P E ++A+ E E + K
Sbjct: 441 NIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEE-PWVVARSEE----EALEKAKKKFG 495
Query: 2082 LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK---QLIFPADLYLEGSDQHRGWFHS 2138
L ++ ++ D LD WF SG+ + + + Q FP L GSD W
Sbjct: 496 LSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVAR 555
Query: 2139 SLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP-------------QKL--C 2183
++ S+ L P+K + H V DS+G+KMSKSKGN+I P QKL
Sbjct: 556 MVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEG 615
Query: 2184 NL---------------F-------GAEILRLWVASTDYSKDLSISNEILNRVVETYR-- 2219
NL F G + LR + + Y++ N +NRVV YR
Sbjct: 616 NLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLA--YTQQGRNINLDINRVV-GYRHF 672
Query: 2220 --RIRNTLRFLLANTSDFNPNINIIKISDMVE-----IDKYAIINITNLQKEILSHYRMY 2272
++ N ++F L N DK+ + + KE+ ++ Y
Sbjct: 673 CNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEY 732
Query: 2273 EFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPI 2332
+F + +L YL+++K RL + + ++ LRL+ P+
Sbjct: 733 DFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIG-LRLLHPM 791
Query: 2333 LSFTSEEAWSIFSDKNFYIESGETIFT------QLHYKLPKVYNSKKLLYKYMILKKIRS 2386
+ F +EE + Y+ E+I + + K++ I+K IRS
Sbjct: 792 MPFITEELYQRLP---NYLRKSESISIAKYPQPNPGWNNEALDEEMKIIMS--IVKSIRS 846
|
Length = 995 |
| >gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 7e-37
Identities = 207/880 (23%), Positives = 342/880 (38%), Gaps = 174/880 (19%)
Query: 444 KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 503
K+ + KF++ PP G +HIGHA+ ++D +++++ M G + +VPG D G+
Sbjct: 54 KSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIAT 113
Query: 504 EIQIEKLYGKNLSPIEIQNKAR-ALAYEKIEQQKMDFM------------RLGILGEWDN 550
++ +EK K +NK R L E+ ++ ++ RLG +W
Sbjct: 114 QVVVEKKLMKE------ENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSR 167
Query: 551 SYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--------- 599
TMD ++A E AF +++ G +Y + VNWC K+A+++ E+E
Sbjct: 168 EVFTMDEQRSKAVKE--AFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTK 225
Query: 600 -----YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 654
Y KK + + F++ ++ SG+ IV+ T+ T+ + A+ V
Sbjct: 226 ITIPGYDKKVEVGVLWHFAY----PLED--------SGQEEIVVATTRIETMLGDVAVAV 273
Query: 655 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNI 714
HP D +K + G K + HP
Sbjct: 274 HP----------KDER------------------YK-KLHG--KELI-------HPFIP- 294
Query: 715 DINYNRLSPIYLGDYITVDS--GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGN 772
+R PI D VD GTG V PA+ D+ I K+ N+ IN DG
Sbjct: 295 ----DRKIPIIA-DDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLP---FINIFTLDGK 346
Query: 773 FISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 832
F GM + + I LK+ L + C R + QW++
Sbjct: 347 INENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYV 406
Query: 833 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI-AF 891
N + K +++R ++K PS ++ + N DW ISRQ WG I A+
Sbjct: 407 NCKDMAKRAVEAVRN------GELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAY 460
Query: 892 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFD 951
+ K + P E ++A+ E E + K L ++ ++ D LD WF
Sbjct: 461 RVISKGPETDPSDEE-PWVVARSEE----EALEKAKKKFGLSEEDFELEQDEDVLDTWFS 515
Query: 952 SGITHQTVIRGSHKK---QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 1008
SG+ + + + Q FP L GSD W ++ S+ L P+K + H
Sbjct: 516 SGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLH 575
Query: 1009 GFVVDSKGKKMSKSKGNIIKP-------------QKL--CNL---------------F-- 1036
V DS+G+KMSKSKGN+I P QKL NL F
Sbjct: 576 AMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPN 635
Query: 1037 -----GAEILRLWVASTDYSKDLSISNEILNRVVETYR----RIRNTLRFLLANTSDFNP 1087
G + LR + + Y++ N +NRVV YR ++ N ++F L
Sbjct: 636 GIPECGTDALRFGLLA--YTQQGRNINLDINRVV-GYRHFCNKLWNAVKFALMKLLKDFN 692
Query: 1088 NINIIKISDMVE-----IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
N DK+ + + KE+ ++ Y+F + +L
Sbjct: 693 LPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDV 752
Query: 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIE 1202
YL+++K RL + + ++ LRL+ P++ F +EE + Y+
Sbjct: 753 YLELIKPRLSKQSDGERKQHAQDVLHTVLDIG-LRLLHPMMPFITEELYQRLP---NYLR 808
Query: 1203 SGETIFT------QLHYKLPKVYNSKKLLYKYMILKKIRS 1236
E+I + + K++ I+K IRS
Sbjct: 809 KSESISIAKYPQPNPGWNNEALDEEMKIIMS--IVKSIRS 846
|
Length = 995 |
| >gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-34
Identities = 208/849 (24%), Positives = 342/849 (40%), Gaps = 170/849 (20%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W W EK Y S ++P F++ PP G +HIGHA+ ++D I+++ M
Sbjct: 106 EKSWYA-WWEKSGYFGADAKS-SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRM 163
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEK--LYGKNLSPIEIQNKARALAYEKIEQQK-----MD 1688
G++A +VPG D G+ ++ +EK + ++L+ +I + K + +
Sbjct: 164 SGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQ 223
Query: 1689 FMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC--KSALAEA 1746
RLG +W TMD AF ++K+G +Y ++ VNW DC ++A+++
Sbjct: 224 LRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNW--DCTLRTAISDV 281
Query: 1747 EIEY---KKK-------YDFSIYVGF--SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPW 1794
E++Y K++ YD + G SF+ P L G G IV+ T+
Sbjct: 282 EVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYP-----------LEGGLGEIVVATTRIE 330
Query: 1795 TIPANQALHVHPEFD-YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLS 1853
T+ + A+ +HP+ + Y +H K + FN G K I IC I L
Sbjct: 331 TMLGDTAIAIHPDDERYKHLHGK-----FAVHPFN---------GRKLPI--ICDAI-LV 373
Query: 1854 KINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913
NF GTG V PA+ DF + K+ N+ +
Sbjct: 374 DPNF---------------------------GTGAVKITPAHDPNDFEVGKRHNL---EF 403
Query: 1914 INPVMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTP 1971
IN DDG I++ F GM + A + + L+K + E C R
Sbjct: 404 INIFTDDGK-INSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDV 462
Query: 1972 IIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISR 2031
+ QWF+N + K++L + K++F P K + N DW ISR
Sbjct: 463 VEPMIKPQWFVNCSSMA---KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISR 519
Query: 2032 QRHWGVPI-AFFIHKKSGKLHPKTLELIEL-----------IAKKIELNGIEIWQNLDIK 2079
Q WG I A+++ TLE +L +A+ +E Q K
Sbjct: 520 QLWWGHRIPAWYV----------TLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGK 569
Query: 2080 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWF 2136
+F + D LD WF SG+ +V+ + + +P + G D W
Sbjct: 570 KF------ELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWV 623
Query: 2137 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEIL----- 2191
++ + L P++ + H + D+ G+KMSKS GN+I P ++ N E L
Sbjct: 624 ARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE 683
Query: 2192 -------RLWVASTDYSKDL--------------------SISNEI---LNRVVETYR-- 2219
L VA KD + S++I + RVV YR
Sbjct: 684 EGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVV-GYRQW 742
Query: 2220 --RIRNTLRFLLAN-TSDFNPNINIIKISDMVEIDKYAIINITNLQKEI---LSHYRMYE 2273
++ N +RF ++ D+ P + + M K+ I+++ N K I +S YE
Sbjct: 743 CNKLWNAVRFAMSKLGDDYTPPAT-LSVETMPFSCKW-ILSVLN--KAISKTVSSLDAYE 798
Query: 2274 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWHINQSLLRLISPI 2332
F S + + +++ +K + R +AQ ++W + LRL+ P
Sbjct: 799 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPF 858
Query: 2333 LSFTSEEAW 2341
+ F +EE W
Sbjct: 859 MPFVTEELW 867
|
Length = 1066 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-34
Identities = 66/234 (28%), Positives = 95/234 (40%), Gaps = 63/234 (26%)
Query: 819 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 878
+ R T QWF +M K +E + A+ + K P K+R+++ + + DW
Sbjct: 131 RGTHPVRITEQWFFDMPK--------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWA 182
Query: 879 ISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVN 938
ISRQR+W G +
Sbjct: 183 ISRQRYW---------------------------------GTPL---------------- 193
Query: 939 YKKSNDTLDVWFDSGITHQTVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII 995
D DVWFDSGI + + +PAD +L G D RGW + + +
Sbjct: 194 ---PEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVA 250
Query: 996 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 1049
L P K LL HGFV+D G+KMSKSKGN+I P + +GA+ LR ++ S
Sbjct: 251 LFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLA 304
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-34
Identities = 66/234 (28%), Positives = 95/234 (40%), Gaps = 63/234 (26%)
Query: 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 2028
+ R T QWF +M K +E + A+ + K P K+R+++ + + DW
Sbjct: 131 RGTHPVRITEQWFFDMPK--------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWA 182
Query: 2029 ISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVN 2088
ISRQR+W G +
Sbjct: 183 ISRQRYW---------------------------------GTPL---------------- 193
Query: 2089 YKKSNDTLDVWFDSGITHQTVIR---GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII 2145
D DVWFDSGI + + +PAD +L G D RGW + + +
Sbjct: 194 ---PEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVA 250
Query: 2146 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199
L P K LL HGFV+D G+KMSKSKGN+I P + +GA+ LR ++ S
Sbjct: 251 LFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLA 304
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-34
Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 815 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMIL 872
C R I QWF+ + K L + A+ A+ + IKF P + R ++ +
Sbjct: 156 CSRSGDVIEPLLKPQWFVKV--------KDLAKKALEAVKEGDIKFVPERMEKRYENWLE 207
Query: 873 NRPDWTISRQRHWGVPIAFFIHKKSGKL--HPKTLELIELIAKKIELNGIEIWQNLDIKE 930
N DW ISRQ WG I + K G + E I+ A + +
Sbjct: 208 NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC----------- 256
Query: 931 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-----SHKKQLIFPADLYLEGSDQHRGW 985
K+ D LD WF S + + + KK +P L + G D W
Sbjct: 257 ----GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK--FYPTSLLVTGHDIIFFW 310
Query: 986 FHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 1045
++ + L P+K + HG V D G+KMSKS GN+I P + + +GA+ LR +
Sbjct: 311 VARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTL 370
Query: 1046 AS 1047
AS
Sbjct: 371 AS 372
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-34
Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 1965 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMIL 2022
C R I QWF+ + K L + A+ A+ + IKF P + R ++ +
Sbjct: 156 CSRSGDVIEPLLKPQWFVKV--------KDLAKKALEAVKEGDIKFVPERMEKRYENWLE 207
Query: 2023 NRPDWTISRQRHWGVPIAFFIHKKSGKL--HPKTLELIELIAKKIELNGIEIWQNLDIKE 2080
N DW ISRQ WG I + K G + E I+ A + +
Sbjct: 208 NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC----------- 256
Query: 2081 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-----SHKKQLIFPADLYLEGSDQHRGW 2135
K+ D LD WF S + + + KK +P L + G D W
Sbjct: 257 ----GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK--FYPTSLLVTGHDIIFFW 310
Query: 2136 FHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 2195
++ + L P+K + HG V D G+KMSKS GN+I P + + +GA+ LR +
Sbjct: 311 VARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTL 370
Query: 2196 AS 2197
AS
Sbjct: 371 AS 372
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 8e-34
Identities = 202/830 (24%), Positives = 336/830 (40%), Gaps = 168/830 (20%)
Query: 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIE 504
A ++P F++ PP G +HIGHA+ ++D I+++ M G++A +VPG D G+ +
Sbjct: 123 AKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQ 182
Query: 505 IQIEK--LYGKNLSPIEIQNKARALAYEKIEQQK-----MDFMRLGILGEWDNSYKTMDF 557
+ +EK + ++L+ +I + K + + RLG +W TMD
Sbjct: 183 VVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDE 242
Query: 558 LNEANELRAFGIIFKKGYVYHGLKPVNWCFDC--KSALAEAEIEY---KKK-------YD 605
AF ++K+G +Y ++ VNW DC ++A+++ E++Y K++ YD
Sbjct: 243 QRSKAVTEAFVRLYKEGLIYRDIRLVNW--DCTLRTAISDVEVDYIDIKERTLLKVPGYD 300
Query: 606 FSIYVGF--SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD-YAL 662
+ G SF+ P L G G IV+ T+ T+ + A+ +HP+ + Y
Sbjct: 301 KPVEFGVLTSFAYP-----------LEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKH 349
Query: 663 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS 722
+H K + FN G K I IC I L NF
Sbjct: 350 LHGK-----FAVHPFN---------GRKLPI--ICDAI-LVDPNF--------------- 377
Query: 723 PIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL--PLF 780
GTG V PA+ DF + K+ N+ + IN DDG I++ F
Sbjct: 378 ------------GTGAVKITPAHDPNDFEVGKRHNL---EFINIFTDDGK-INSNGGSEF 421
Query: 781 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 840
GM + A + + L+K + E C R + QWF+N +
Sbjct: 422 AGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMA-- 479
Query: 841 EKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI-AFFIHKKSGK 899
K++L + K++F P K + N DW ISRQ WG I A+++
Sbjct: 480 -KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYV------ 532
Query: 900 LHPKTLELIEL-----------IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDV 948
TLE +L +A+ +E Q K+F + D LD
Sbjct: 533 ----TLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKF------ELSQDPDVLDT 582
Query: 949 WFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKAL 1005
WF SG+ +V+ + + +P + G D W ++ + L P++ +
Sbjct: 583 WFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKV 642
Query: 1006 LTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEIL------------RLWVASTDYSKD 1053
H + D+ G+KMSKS GN+I P ++ N E L L VA KD
Sbjct: 643 YLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKD 702
Query: 1054 L--------------------SISNEI---LNRVVETYR----RIRNTLRFLLAN-TSDF 1085
+ S++I + RVV YR ++ N +RF ++ D+
Sbjct: 703 FPNGIAECGTDALRFALVSYTAQSDKINLDILRVV-GYRQWCNKLWNAVRFAMSKLGDDY 761
Query: 1086 NPNINIIKISDMVEIDKYAIINITNLQKEI---LSHYRMYEFHMIVSKLQIYCSEDLGSF 1142
P + + M K+ I+++ N K I +S YEF S + +
Sbjct: 762 TPPAT-LSVETMPFSCKW-ILSVLN--KAISKTVSSLDAYEFSDAASTVYSWWQYQFCDV 817
Query: 1143 YLDILKDRLYTTKKN-SHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
+++ +K + R +AQ ++W + LRL+ P + F +EE W
Sbjct: 818 FIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELW 867
|
Length = 1066 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 7e-32
Identities = 183/913 (20%), Positives = 314/913 (34%), Gaps = 217/913 (23%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W +KW E K + ++ S ++PK+ + PY +G +H+GH N + D++ ++Y M
Sbjct: 7 EEKWQQKWDENKTF-KVTDDS-SKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRM 64
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E + I+ YE I K LG
Sbjct: 65 KGYNVLHPIGWDAFGLPAE----------NAAIKRGIHPAKWTYENIANMKKQLQALGFS 114
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA----------- 1744
+WD T D F +F+KG Y VNWC + + LA
Sbjct: 115 YDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSW 174
Query: 1745 --EAEIEYKKKYDFSIYVGFSFSE------------PEKIKSI--------------FNL 1776
+ +E K+ + + + +++E PE +K + F +
Sbjct: 175 RGDTPVEKKELKQWFLKIT-AYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKI 233
Query: 1777 KNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836
+ I ++T+ P TI L + PE +N+P + AF +K L K
Sbjct: 234 AD---HDEKITVFTTRPDTIFGVTYLALAPEHPLVEKAAENNPKV---AAF--IKKILNK 285
Query: 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYG 1896
+ K + I HPL+ I PI++ +Y+ ++ GTG V PA+
Sbjct: 286 TVAERTKATKEKKGVDTGIKAIHPLTGEKI------PIWVANYVLMEYGTGAVMGVPAHD 339
Query: 1897 IEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956
DF +K + I PV+D K L +Y + + +
Sbjct: 340 ERDFEFAQKYGLP----IKPVIDPAE--------------KDLSLTAAYTEDGVLVNS-- 379
Query: 1957 MFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDR 2016
E + ++ + II K + LR
Sbjct: 380 -GEFNGLNSSEARNAII-----DMLEKEGKGKRKVNYRLR-------------------- 413
Query: 2017 LKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE---------L 2067
DW SRQR+WG PI IH + G + P E + +I + L
Sbjct: 414 ---------DWGFSRQRYWGEPIP-IIHCEDGGVVPVPEEDLPVILPEDVVYDGDGGSPL 463
Query: 2068 NGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI-------- 2119
+ I W N+ + DT+D + S + + +
Sbjct: 464 SRIPEWVNVTCPSC----GKPALRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKAEYW 519
Query: 2120 FPADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFV------------ 2161
P DLY+ G + + +FH L +N P+K L+ G V
Sbjct: 520 LPVDLYIGGIEHAILHLLYARFFHKFLRDIGYVNTKEPFKKLINQGMVLGFYYPPNGKVP 579
Query: 2162 -------------------VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYS 2201
V +KMSKSKGN I PQ++ +GA+ LRL++ +
Sbjct: 580 ADVLTERDEKGKDKAGGELVYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIA 639
Query: 2202 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNL 2261
L + L R+ N L + + ++ + E K ++
Sbjct: 640 ASLEWNESGLEGARRFLDRVWN-----LVYEITGELDAASLTVTALEEAQKELRRDVHKF 694
Query: 2262 QKEILSHY-RMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWH 2320
K++ + F+ +S + ++ LY KK + +
Sbjct: 695 LKKVTEDLEKRESFNTAISAMMELLNK-------------LYKAKKEALMLEYLKG---- 737
Query: 2321 INQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMI 2380
+ ++SP +EE W + S I K P V + + K +I
Sbjct: 738 ----FVTVLSPFAPHLAEELWE-------KLGSEPFIIDN--AKWPVVDETALVEDKTLI 784
Query: 2381 LKKIRSKVMQKLE 2393
+ ++ K K+
Sbjct: 785 VVQVNGKFRAKIT 797
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|129157 TIGR00046, TIGR00046, RNA methyltransferase, RsmE family | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
L + +K + II K ELGV I P R +++L+ E IKK RW+ I I A EQS
Sbjct: 81 AIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE-AIKKLERWQKIAIEAAEQS 139
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GRNI+P + P ++ + L+ + ++IGPEGGF+
Sbjct: 140 GRNIVPEIKPPKNLKEKC-AEAYEEALKLNFHPEASPLSANLPIPAGNIVIIIGPEGGFS 198
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
EKE L E G + LG RILRTETA L AL+IL
Sbjct: 199 EKEIQLLKEKGFTPVLLGPRILRTETAPLYALSILQ 234
|
Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 240 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-30
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
KF + PPYANG +H+GHA+ I+ D I ++ M G++ ++PG+D HG+PIE++ E+
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 511 YGKNLSPIEIQ---NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAF 567
G+ I I+ + E + K DF RLGI +W + Y T + F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 568 GIIFKKGYVYHGLKPV----NWCFD 588
+++KG +Y G PV W FD
Sbjct: 121 SRLYEKGLIYRGTHPVRITEQWFFD 145
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-30
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
KF + PPYANG +H+GHA+ I+ D I ++ M G++ ++PG+D HG+PIE++ E+
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 1661 YGKNLSPIEIQ---NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAF 1717
G+ I I+ + E + K DF RLGI +W + Y T + F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 1718 GIIFKKGYVYHGLKPV----NWCFD 1738
+++KG +Y G PV W FD
Sbjct: 121 SRLYEKGLIYRGTHPVRITEQWFFD 145
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 8e-30
Identities = 141/560 (25%), Positives = 228/560 (40%), Gaps = 152/560 (27%)
Query: 1576 EPGWIKKWQEKKIYHQIRKA----SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
E W +KW+EK + + SI P PP G +H+GHA+N L+DI+++
Sbjct: 15 EAKWYQKWEEKGYFKPDDNSKKPFSIVIP-------PPNVTGSLHMGHALNNTLQDILIR 67
Query: 1632 FYNMDGFDAQYVPGYDCH-GMPIEIQIEK-LYGKNLSPIEI----------QNKARALAY 1679
+ M G++ ++PG D H G+ ++ +E+ L + S ++ + K
Sbjct: 68 YKRMQGYNTLWLPGTD-HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEE---S 123
Query: 1680 EKI--EQQKMDFMRLGILGEWDNSYKTMD-FLNEA-NELRAFGIIFKKGYVYHGLKPVNW 1735
Q + RLG +W TMD L++A E F +++KG +Y G + VNW
Sbjct: 124 GGTITNQLR----RLGASCDWSRERFTMDEGLSKAVRE--VFVRLYEKGLIYRGKRLVNW 177
Query: 1736 CFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795
++AL++ E+EYK+ ++ P L + G Y+V+ T+ P T
Sbjct: 178 DPKLQTALSDLEVEYKEV-KGKLW---HIRYP--------LAD---GSDYLVVATTRPET 222
Query: 1796 IPANQALHVHPEFD--YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLS 1853
+ + A+ V+PE D Y ++IG K + L
Sbjct: 223 MLGDTAVAVNPE-DERYK------------------------------HLIG--KTVIL- 248
Query: 1854 KINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913
PL R PI +Y+ + GTG V PA+ DF + K+ N+ +
Sbjct: 249 ------PLVG------REIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNL---PM 293
Query: 1914 INPVMDDGNFISTLPL-FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPI 1972
IN +MD+ I+ P + G+ ++A K I + L++ L IE HS H R I
Sbjct: 294 IN-IMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVI 352
Query: 1973 IYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTIS 2030
+ QWF+ M K L + A+ A+ +IKF P + + N DW IS
Sbjct: 353 EPYLSDQWFVKM--------KPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCIS 404
Query: 2031 RQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAV--- 2087
RQ WG H+ I W + D + ++G +
Sbjct: 405 RQLWWG-------HR------------------------IPAWYDEDGEVYVGREEPEAR 433
Query: 2088 ---NYKKSNDTLDVWFDSGI 2104
+ D LD WF S +
Sbjct: 434 EKALLTQDEDVLDTWFSSAL 453
|
Length = 874 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-29
Identities = 176/891 (19%), Positives = 303/891 (34%), Gaps = 215/891 (24%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
++PK+ + PY +G +H+GH N + D++ ++Y M G++ + G+D G+P E
Sbjct: 27 SKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAE--- 83
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAF 567
+ I+ YE I K LG +WD T D F
Sbjct: 84 -------NAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIF 136
Query: 568 GIIFKKGYVYHGLKPVNWCFDCKSALA-------------EAEIEYKKKYDFSIYVGFSF 614
+F+KG Y VNWC + + LA + +E K+ + + + ++
Sbjct: 137 LELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGDTPVEKKELKQWFLKIT-AY 195
Query: 615 SE------------PEKIKSI--------------FNLKNLPSGKGYIVIWTSTPWTIPA 648
+E PE +K + F + + I ++T+ P TI
Sbjct: 196 AEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIAD---HDEKITVFTTRPDTIFG 252
Query: 649 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFF 708
L + PE +N+P + AF +K L K + K + I
Sbjct: 253 VTYLALAPEHPLVEKAAENNPKV---AAF--IKKILNKTVAERTKATKEKKGVDTGIKAI 307
Query: 709 HPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768
HPL+ I PI++ +Y+ ++ GTG V PA+ DF +K + I PV+
Sbjct: 308 HPLTGEKI------PIWVANYVLMEYGTGAVMGVPAHDERDFEFAQKYGLP----IKPVI 357
Query: 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL 828
D K L +Y + + + E + ++ + II
Sbjct: 358 DPAE--------------KDLSLTAAYTEDGVLVNS---GEFNGLNSSEARNAII----- 395
Query: 829 QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 888
K + LR DW SRQR+WG P
Sbjct: 396 DMLEKEGKGKRKVNYRLR-----------------------------DWGFSRQRYWGEP 426
Query: 889 IAFFIHKKSGKLHPKTLELIELIAKKIE---------LNGIEIWQNLDIKEFLGDDAVNY 939
I IH + G + P E + +I + L+ I W N+
Sbjct: 427 IP-IIHCEDGGVVPVPEEDLPVILPEDVVYDGDGGSPLSRIPEWVNVTCPSC----GKPA 481
Query: 940 KKSNDTLDVWFDSGITHQTVIRGSHKKQLI--------FPADLYLEGSDQ------HRGW 985
+ DT+D + S + + + P DLY+ G + + +
Sbjct: 482 LRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKAEYWLPVDLYIGGIEHAILHLLYARF 541
Query: 986 FHSSLLTSIILNKSAPYKALLTHGFV-------------------------------VDS 1014
FH L +N P+K L+ G V V
Sbjct: 542 FHKFLRDIGYVNTKEPFKKLINQGMVLGFYYPPNGKVPADVLTERDEKGKDKAGGELVYV 601
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRVVETYRRIRN 1073
+KMSKSKGN I PQ++ +GA+ LRL++ + L + L R+ N
Sbjct: 602 GYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWN 661
Query: 1074 TLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSKLQ 1132
L + + ++ + E K ++ K++ + F+ +S +
Sbjct: 662 -----LVYEITGELDAASLTVTALEEAQKELRRDVHKFLKKVTEDLEKRESFNTAISAMM 716
Query: 1133 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 1192
++ LY KK + + + ++SP +EE W
Sbjct: 717 ELLNK-------------LYKAKKEALMLEYLKG--------FVTVLSPFAPHLAEELWE 755
Query: 1193 IFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLE 1243
+ S I K P V + + K +I+ ++ K K+
Sbjct: 756 -------KLGSEPFIIDN--AKWPVVDETALVEDKTLIVVQVNGKFRAKIT 797
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-27
Identities = 132/524 (25%), Positives = 215/524 (41%), Gaps = 141/524 (26%)
Query: 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH-GMPIEIQIEK-LYGKNL 515
PP G +H+GHA+N L+DI++++ M G++ ++PG D H G+ ++ +E+ L +
Sbjct: 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD-HAGIATQMVVERQLAAEGK 102
Query: 516 SPIEI----------QNKARALAYEKI--EQQKMDFMRLGILGEWDNSYKTMD-FLNEA- 561
S ++ + K Q + RLG +W TMD L++A
Sbjct: 103 SRHDLGREKFLEKVWEWKEE---SGGTITNQLR----RLGASCDWSRERFTMDEGLSKAV 155
Query: 562 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIK 621
E F +++KG +Y G + VNW ++AL++ E+EYK+ ++ P
Sbjct: 156 RE--VFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEV-KGKLW---HIRYP---- 205
Query: 622 SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILAFNL 679
L + G Y+V+ T+ P T+ + A+ V+PE D Y
Sbjct: 206 ----LAD---GSDYLVVATTRPETMLGDTAVAVNPE-DERYK------------------ 239
Query: 680 VKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIV 739
++IG K + L PL R PI +Y+ + GTG V
Sbjct: 240 ------------HLIG--KTVIL-------PLVG------REIPIIADEYVDPEFGTGAV 272
Query: 740 HSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-FGGMSIWKASKLICSYLKK 798
PA+ DF + K+ N+ +IN +MD+ I+ P + G+ ++A K I + L++
Sbjct: 273 KITPAHDPNDFEVGKRHNL---PMIN-IMDEDGTINENPGEYQGLDRFEARKAIVADLEE 328
Query: 799 SKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KI 856
L IE HS H R I + QWF+ M K L + A+ A+ +I
Sbjct: 329 LGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKM--------KPLAKPALEAVENGEI 380
Query: 857 KFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916
KF P + + N DW ISRQ WG H+
Sbjct: 381 KFVPERWEKTYFHWMENIQDWCISRQLWWG-------HR--------------------- 412
Query: 917 LNGIEIWQNLDIKEFLGDDAV------NYKKSNDTLDVWFDSGI 954
I W + D + ++G + + D LD WF S +
Sbjct: 413 ---IPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSAL 453
|
Length = 874 |
| >gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-26
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 57 AKLALIA-GEVPVGAVLVKNNL-VISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
AK A PVGAV+VKN+ +I+ GYN + DPT HAE A+R A +L +
Sbjct: 15 AKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERNAIRNAGRLGEGIKL- 73
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGT 145
+ +YVTLEPC MC AII + ++++GT
Sbjct: 74 EGATLYVTLEPCGMCRQAIIESGIKKVVFGT 104
|
Length = 104 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
P F++ PP G +H+GHA+N ++DII ++ M G++ + PG D G+ ++ +EK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 510 LYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE 563
G +L E K E + + RLG +W Y TMD
Sbjct: 61 KLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAV 120
Query: 564 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK 601
AF +++KG +Y + VNWC ++A+++ E+ +
Sbjct: 121 QEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSR 158
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
P F++ PP G +H+GHA+N ++DII ++ M G++ + PG D G+ ++ +EK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 1660 LYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE 1713
G +L E K E + + RLG +W Y TMD
Sbjct: 61 KLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAV 120
Query: 1714 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK 1751
AF +++KG +Y + VNWC ++A+++ E+ +
Sbjct: 121 QEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSR 158
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 1e-20
Identities = 160/871 (18%), Positives = 300/871 (34%), Gaps = 190/871 (21%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASIN-RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYN 1634
E W K+W+E I+ +A + R KF L PY NG +H GH + ++ +F
Sbjct: 4 EKKWQKRWEEAHIF----EADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFER 59
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ---------- 1684
M G + + G+ G PI E + ++ I+ + A+ E++ +
Sbjct: 60 MKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEY 119
Query: 1685 ----QKMDFMRLGILGEWDNSYKTMD-----FLN-EANELRAFGIIFKKGYVYHGLKPVN 1734
+ +G +W S+KT D F+ + N+L+ G+I K G PV
Sbjct: 120 FSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK------GEHPVR 173
Query: 1735 WCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPW 1794
+C + + + ++ + Y+ F L G Y V T P
Sbjct: 174 YCPKDGNPVEDHDLLSGEGVTIVEYILIKFE-------------LEDGAFYFVAATLRPE 220
Query: 1795 TIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF---KGNIIGICKGIK 1851
T+ V+P Y + + + + K + + K I G +
Sbjct: 221 TVYGVTNCWVNPTITYVIAEVGGE-------KWITSKEAFENLSYQKLKYKPIEEVPGKQ 273
Query: 1852 LSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPA----------------- 1894
+P+ ++ PI +++ GTG+V S PA
Sbjct: 274 FIGKKVHNPVVGPEV------PILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPE 327
Query: 1895 -YGIEDFLI------------------------FKKQNMKDSDIINPVMDD--------G 1921
GI+ +I ++ KD +++ G
Sbjct: 328 YLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTG 387
Query: 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL-QW 1980
I +P + GM + +A + + + L + + F S + C R T I + QW
Sbjct: 388 VMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSESPVIC-RCGTDCIVKVVEDQW 446
Query: 1981 FINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040
F+ +S +E A + ++ P K+ + I DW R+ G +
Sbjct: 447 FVKYS------DESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLP 500
Query: 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL-DIKEFLGDDAVNYKKSNDTLDVW 2099
+ LIE L+ I+ I +L D Y T +
Sbjct: 501 W-----------DEKWLIE------SLSDSTIYMAYYTIAHYLNKD--YYGNEQMTDEF- 540
Query: 2100 FDSGITHQTVIRGSH---------KKQLI--FPADLYLEGSD---QHRGWFHSSLLTSII 2145
FD + ++ ++ +++ +P D + G D H LT I
Sbjct: 541 FDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNH--------LTFYI 592
Query: 2146 LNKSAPY------KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST- 2198
+ A + + ++ +G+V+ +GKKMSKSKGN++ ++ FGA++ RL++A
Sbjct: 593 FHHVAIFPEKFWPRGIVVNGYVM-LEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651
Query: 2199 DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINI 2258
+ +D + V T R+ F T + N E
Sbjct: 652 ETVQDADWKE---SEVEGTILRLERLYEFAEEITKESNLETG-------EETSFIDRWLE 701
Query: 2259 TNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSI 2318
+ + I Y E ++ + + D+ D + ++ +
Sbjct: 702 SRMNAAIKETYEAMENFQTRKAVKY-------ALF-DLQADVDWYRRRGGVNHKDVLARY 753
Query: 2319 WHINQSLLRLISPILSFTSEEAWSIFSDKNF 2349
+ ++L++P +EE W ++ F
Sbjct: 754 LE---TWIKLLAPFAPHFAEEMWEEVGNEGF 781
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-20
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAGAII R+ ++YG KTGA GS++++ ++ +LNH + GG+++++C L
Sbjct: 86 EPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSAL 145
Query: 1399 LKSFF 1403
L FF
Sbjct: 146 LSEFF 150
|
Length = 152 |
| >gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 6e-20
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 1101 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 1160
D++ + + L KE+ Y Y F+ S L + DL +YL++ KDRLY + +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYG--EAPDS 58
Query: 1161 RRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYN 1220
RSAQT ++ + ++LLRL++P + F +EE W + E+I + +V
Sbjct: 59 DRSAQTVLYEVLETLLRLLAPFMPFITEELWQ-------KLGKKESIHLAPWPEPDEVEE 111
Query: 1221 SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIIL 1261
++L ++ ++R +++Q + K+RS I SL E++L
Sbjct: 112 DEELEEEF----ELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
|
This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA. Length = 148 |
| >gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 6e-20
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 2251 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 2310
D++ + + L KE+ Y Y F+ S L + DL +YL++ KDRLY + +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYG--EAPDS 58
Query: 2311 RRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYN 2370
RSAQT ++ + ++LLRL++P + F +EE W + E+I + +V
Sbjct: 59 DRSAQTVLYEVLETLLRLLAPFMPFITEELWQ-------KLGKKESIHLAPWPEPDEVEE 111
Query: 2371 SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIIL 2411
++L ++ ++R +++Q + K+RS I SL E++L
Sbjct: 112 DEELEEEF----ELRQEIVQAIRKLRSELKIKKSLPLEVVL 148
|
This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA. Length = 148 |
| >gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-19
Identities = 31/58 (53%), Positives = 47/58 (81%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
S + AR++++LGFYIS SGIVTFKN++ L++V + L +L+ETD+PYL+P+P+R K
Sbjct: 160 SAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRGK 217
|
Length = 256 |
| >gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-19
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAGA++H R+G +++G KTGA GS++++ +NH +T GV+ +C L
Sbjct: 90 EPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAAL 149
Query: 1399 LKSFFIKRRNFVKNKIQALPENR 1421
L FF RR +K +A
Sbjct: 150 LSDFFRMRRQEIKALKKAQRSTD 172
|
Length = 172 |
| >gnl|CDD|232780 TIGR00010, TIGR00010, hydrolase, TatD family | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 6e-19
Identities = 32/58 (55%), Positives = 49/58 (84%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
++A+++++LGFYIS SGIVTFKN+K L++V+ I L+ +L+ETDSPYL+P+P+R K
Sbjct: 156 DAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAPVPYRGK 213
|
PSI-BLAST, starting with a urease alpha subunit, finds a large superfamily of proteins, including a number of different enzymes that act as hydrolases at C-N bonds other than peptide bonds (EC 3.5.-.-), many uncharacterized proteins, and the members of this family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity [Unknown function, Enzymes of unknown specificity]. Length = 252 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-18
Identities = 153/848 (18%), Positives = 289/848 (34%), Gaps = 185/848 (21%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+R KF L PY NG +H GH + ++ +F M G + + G+ G PI
Sbjct: 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLA 82
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQ--------------QKMDFMRLGILGEWDNSYK 553
E + ++ I+ + A+ E++ + + +G +W S+K
Sbjct: 83 ELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFK 142
Query: 554 TMD-----FLN-EANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607
T D F+ + N+L+ G+I K G PV +C + + + ++ +
Sbjct: 143 TTDPYYDRFIEWQMNKLKELGLIVK------GEHPVRYCPKDGNPVEDHDLLSGEGVTIV 196
Query: 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN 667
Y+ F L G Y V T P T+ V+P Y + +
Sbjct: 197 EYILIKFE-------------LEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGG 243
Query: 668 DPPLLLILAFNLVKSCLKKFGF---KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPI 724
+ + K + + K I G + +P+ ++ PI
Sbjct: 244 E-------KWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEV------PI 290
Query: 725 YLGDYITVDSGTGIVHSAPA------------------YGIEDFLI-------------- 752
+++ GTG+V S PA GI+ +I
Sbjct: 291 LPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYG 350
Query: 753 ----------FKKQNMKDSDIINPVMDD--------GNFISTLPLFGGMSIWKASKLICS 794
++ KD +++ G I +P + GM + +A + + +
Sbjct: 351 DLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKA 410
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAI 853
L + + F S + C R T I + QWF+ +S +E A +
Sbjct: 411 DLIDAGLADVMYEFSESPVIC-RCGTDCIVKVVEDQWFVKYS------DESWKELAHECL 463
Query: 854 NKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAK 913
++ P K+ + I DW R+ G + + LIE
Sbjct: 464 EGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPW-----------DEKWLIE---- 508
Query: 914 KIELNGIEIWQNL-DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------- 964
L+ I+ I +L D Y T + FD + ++ ++
Sbjct: 509 --SLSDSTIYMAYYTIAHYLNKD--YYGNEQMTDEF-FDYIFLGKGDVKNTNIPLPAIQK 563
Query: 965 -KKQLI--FPADLYLEGSD---QHRGWFHSSLLTSIILNKSAPY------KALLTHGFVV 1012
+++ +P D + G D H LT I + A + + ++ +G+V+
Sbjct: 564 LRREFEYWYPLDWRISGKDLIPNH--------LTFYIFHHVAIFPEKFWPRGIVVNGYVM 615
Query: 1013 DSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRI 1071
+GKKMSKSKGN++ ++ FGA++ RL++A + +D + V T R+
Sbjct: 616 -LEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKE---SEVEGTILRL 671
Query: 1072 RNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL 1131
F T + N E + + I Y E +
Sbjct: 672 ERLYEFAEEITKESNLETG-------EETSFIDRWLESRMNAAIKETYEAMENFQTRKAV 724
Query: 1132 QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
+ + + D+ D + ++ + + ++L++P +EE W
Sbjct: 725 KY-------ALF-DLQADVDWYRRRGGVNHKDVLARYLE---TWIKLLAPFAPHFAEEMW 773
Query: 1192 SIFSDKNF 1199
++ F
Sbjct: 774 EEVGNEGF 781
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|236767 PRK10812, PRK10812, putative DNAse; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 3 DVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 162 ETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
|
Length = 265 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 4e-18
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W K+W+E K++ + + S KF + PY +G +H+GH N + D+I ++ M
Sbjct: 11 EEKWQKRWEEAKVF-EADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRM 69
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E N + I+I Y I K LG
Sbjct: 70 QGYNVLHPMGWDAFGLPAE---------NAA-IKIGTDPAKWTYYNIAYMKKQLKSLGFS 119
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 1749
+W + T D F +++KG Y PVNWC + LA ++
Sbjct: 120 IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI 173
|
Length = 814 |
| >gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-17
Identities = 35/58 (60%), Positives = 49/58 (84%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
SL+ A+EI++LGFYIS SGIVTFKN+K L++V+ I L +L+ETD+PYL+P+P+R K
Sbjct: 160 SLETAKEILDLGFYISISGIVTFKNAKKLREVVAEIPLDRLLVETDAPYLAPVPYRGK 217
|
This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme. Length = 255 |
| >gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-17
Identities = 33/58 (56%), Positives = 47/58 (81%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
S + A+E+++LGFYIS SGIVTFKN+ L++V+ I L+ +L+ETDSPYL+P+P R K
Sbjct: 156 SAEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFRGK 213
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. Length = 251 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-17
Identities = 72/356 (20%), Positives = 129/356 (36%), Gaps = 70/356 (19%)
Query: 875 PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE--------LNGIEIWQNL 926
DW SRQR+WG PI IH + + P + + + + L E W
Sbjct: 420 RDWLKSRQRYWGEPIPI-IHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEW--- 475
Query: 927 DIKEFLGDDAVNYKKSNDTLDVWFDSG---------ITHQTVIRGSHKKQLIFPADLYLE 977
+ E L D + DT+D + DS I + + +P DLY+
Sbjct: 476 -VIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIG 532
Query: 978 GSDQHRGWFHSSL-LTSIILNKSA-----------PYKALLTHGFVVDSKGKKMSKSKGN 1025
G + H+ L L A P+K L+T G V+ +G+KMSKSKGN
Sbjct: 533 GIE------HAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN 586
Query: 1026 IIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD 1084
++ P++ +GA+ +RL++ +DL S + R ++ +
Sbjct: 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA---RRFLQRVWNL----VKE 639
Query: 1085 FNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSKLQIYCSEDLGSFY 1143
+ + + D++ + K++ + F+ ++
Sbjct: 640 HLEKLVEELTKEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAIAA------------- 683
Query: 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF 1199
L L + L + + R +RL++P +EE W ++ F
Sbjct: 684 LMELLNALRKYLRRTEGDRKVLREALET---WVRLLAPFAPHIAEELWEELGNEGF 736
|
Length = 814 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-17
Identities = 72/356 (20%), Positives = 129/356 (36%), Gaps = 70/356 (19%)
Query: 2025 PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE--------LNGIEIWQNL 2076
DW SRQR+WG PI IH + + P + + + + L E W
Sbjct: 420 RDWLKSRQRYWGEPIPI-IHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEW--- 475
Query: 2077 DIKEFLGDDAVNYKKSNDTLDVWFDSG---------ITHQTVIRGSHKKQLIFPADLYLE 2127
+ E L D + DT+D + DS I + + +P DLY+
Sbjct: 476 -VIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIG 532
Query: 2128 GSDQHRGWFHSSL-LTSIILNKSA-----------PYKALLTHGFVVDSKGKKMSKSKGN 2175
G + H+ L L A P+K L+T G V+ +G+KMSKSKGN
Sbjct: 533 GIE------HAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN 586
Query: 2176 IIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD 2234
++ P++ +GA+ +RL++ +DL S + R ++ +
Sbjct: 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA---RRFLQRVWNL----VKE 639
Query: 2235 FNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSKLQIYCSEDLGSFY 2293
+ + + D++ + K++ + F+ ++
Sbjct: 640 HLEKLVEELTKEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAIAA------------- 683
Query: 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF 2349
L L + L + + R +RL++P +EE W ++ F
Sbjct: 684 LMELLNALRKYLRRTEGDRKVLREALET---WVRLLAPFAPHIAEELWEELGNEGF 736
|
Length = 814 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-16
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 505
K ++ PY NG H+GH + D+ ++ + G++ ++ G D HG IE+
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 506 QIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELR 565
+ EK ++P E+ +K E+ K F L I +DN +T ++
Sbjct: 61 KAEKE---GITPQELVDKNH-------EEFKELFKALNI--SFDNFIRTTSPEHKELVQE 108
Query: 566 AFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 599
F +++ G +Y +C C+ L + +E
Sbjct: 109 FFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142
|
Length = 558 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-16
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 1596 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 1655
K ++ PY NG H+GH + D+ ++ + G++ ++ G D HG IE+
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 1656 QIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELR 1715
+ EK ++P E+ +K E+ K F L I +DN +T ++
Sbjct: 61 KAEKE---GITPQELVDKNH-------EEFKELFKALNI--SFDNFIRTTSPEHKELVQE 108
Query: 1716 AFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 1749
F +++ G +Y +C C+ L + +E
Sbjct: 109 FFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142
|
Length = 558 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-15
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PYANG H+GHA IL D+ ++ + G++ +V G D HG IE++ E+ L+P
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPK 64
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
E+ +K +E+ + D+ L I +D +T D ++ + F + + GY+Y
Sbjct: 65 ELVDK----YHEEFKD---DWKWLNI--SFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115
Query: 579 GLKPVNWCFDCKSALAEAEIEYKKKY 604
+C +C+ L + +E
Sbjct: 116 KEIKQLYCPECEMFLPDRYVEGTCPK 141
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-15
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PYANG H+GHA IL D+ ++ + G++ +V G D HG IE++ E+ L+P
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPK 64
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728
E+ +K +E+ + D+ L I +D +T D ++ + F + + GY+Y
Sbjct: 65 ELVDK----YHEEFKD---DWKWLNI--SFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE 115
Query: 1729 GLKPVNWCFDCKSALAEAEIEYKKKY 1754
+C +C+ L + +E
Sbjct: 116 KEIKQLYCPECEMFLPDRYVEGTCPK 141
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
VG V+VK+ ++ GY+++ HAE+ ALRMA + + YVTLEPC
Sbjct: 29 SVGCVIVKDGEIVGEGYHEKAGG----PHAEVCALRMAGEAA------RGATAYVTLEPC 78
Query: 127 AM------CAGAIIHVRLGEIIYGT--PSFKTGACGSIINLFQEKKLNHHTILTGGVMQK 178
+ CA A+I + ++ P+ A G + L + G++++
Sbjct: 79 SHYGRTPPCADALIKAGVARVVVAMLDPNPLV-AGGGLARL-----RAAGIEVEVGILEE 132
Query: 179 QCEKLLKSFFIKRR 192
+ EKL + F + R
Sbjct: 133 EAEKLNEGFLKRMR 146
|
Length = 146 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-14
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEI 505
S KF + PY +G +H+GH N + D+I ++ M G++ + G+D G+P E
Sbjct: 30 SDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAE- 88
Query: 506 QIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELR 565
N + I+I Y I K LG +W + T D
Sbjct: 89 --------NAA-IKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQW 139
Query: 566 AFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 599
F +++KG Y PVNWC + LA ++
Sbjct: 140 QFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI 173
|
Length = 814 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 6e-14
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY NG HIGH I D+ ++ + G+D +V G D HG IE+ EK ++P
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE---GVTPQ 64
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578
E+ ++ E+ K F + I +D+ +T ++ F +++KG +Y
Sbjct: 65 ELVDRYH-------EEFKELFKKFNI--SFDDFIRTTSERHKELVQEFFLKLYEKGDIYE 115
Query: 579 GLKPVNWCFDCKSALAEAEIE 599
G +C + L + +E
Sbjct: 116 GEYEGWYCVSDERFLPDRYVE 136
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 6e-14
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PY NG HIGH I D+ ++ + G+D +V G D HG IE+ EK ++P
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE---GVTPQ 64
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728
E+ ++ E+ K F + I +D+ +T ++ F +++KG +Y
Sbjct: 65 ELVDRYH-------EEFKELFKKFNI--SFDDFIRTTSERHKELVQEFFLKLYEKGDIYE 115
Query: 1729 GLKPVNWCFDCKSALAEAEIE 1749
G +C + L + +E
Sbjct: 116 GEYEGWYCVSDERFLPDRYVE 136
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 6e-14
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY NG H+GH +L D+ ++ + G+D +V G D HG IE + E+ ++P
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQ 65
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
E+ +K E K F L I +D +T ++ F +++ GY+Y
Sbjct: 66 ELCDKYH-------EIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIY 115
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 6e-14
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PY NG H+GH +L D+ ++ + G+D +V G D HG IE + E+ ++P
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQ 65
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
E+ +K E K F L I +D +T ++ F +++ GY+Y
Sbjct: 66 ELCDKYH-------EIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIY 115
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-13
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSISNE 1059
P+K + HG V D +G+KMSKSKGN+I P L + +GA+ LR A +D+ E
Sbjct: 503 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEE 562
Query: 1060 ILNRVVETYR----RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115
VE YR ++ N RF+L N + + ++ D++ + + E+
Sbjct: 563 R----VEGYRNFANKLWNASRFVLMNLEGADVG-ELPDPEELSLADRWILSRLNRTVAEV 617
Query: 1116 LSHYRMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWH 1170
Y F L +C +YL++ K L K R+ + ++ +
Sbjct: 618 TEALDKYRFDEAARALYEFIWNEFC-----DWYLELAKPVLQEAAK-----RATRATLAY 667
Query: 1171 INQSLLRLISPILSFTSEEAWSIFSDK 1197
+ + +LRL+ P + F +EE W +
Sbjct: 668 VLEQILRLLHPFMPFITEELWQKLAPL 694
|
Length = 874 |
| >gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-13
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSISNE 2209
P+K + HG V D +G+KMSKSKGN+I P L + +GA+ LR A +D+ E
Sbjct: 503 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEE 562
Query: 2210 ILNRVVETYR----RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265
VE YR ++ N RF+L N + + ++ D++ + + E+
Sbjct: 563 R----VEGYRNFANKLWNASRFVLMNLEGADVG-ELPDPEELSLADRWILSRLNRTVAEV 617
Query: 2266 LSHYRMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWH 2320
Y F L +C +YL++ K L K R+ + ++ +
Sbjct: 618 TEALDKYRFDEAARALYEFIWNEFC-----DWYLELAKPVLQEAAK-----RATRATLAY 667
Query: 2321 INQSLLRLISPILSFTSEEAWSIFSDK 2347
+ + +LRL+ P + F +EE W +
Sbjct: 668 VLEQILRLLHPFMPFITEELWQKLAPL 694
|
Length = 874 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PY +G +H+GH + DII ++ M G++ + G+D G+P E N + I
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE---------NAA-I 58
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYVY 577
+I I++ K R+G +W + T D + + F +++KG Y
Sbjct: 59 KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ-WLFLKLYEKGLAY 117
Query: 578 HGLKPVNWCFDCK 590
PVNWC
Sbjct: 118 KKEAPVNWCKLLD 130
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PY +G +H+GH + DII ++ M G++ + G+D G+P E N + I
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE---------NAA-I 58
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYVY 1727
+I I++ K R+G +W + T D + + F +++KG Y
Sbjct: 59 KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ-WLFLKLYEKGLAY 117
Query: 1728 HGLKPVNWCFDCK 1740
PVNWC
Sbjct: 118 KKEAPVNWCKLLD 130
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 1373
EPC MCAGA++ R+ ++YG K G G +I
Sbjct: 75 EPCPMCAGALLWARIKRVVYGASDPKLGGIGFLIE 109
|
These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109 |
| >gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 67 PVGAVLVKNN-LVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEP 125
PVG V+V ++ ++ GY R HAE+ AL A + + ++ +YVTLEP
Sbjct: 20 PVGCVIVDDDGEIVGEGY----HRKAGGPHAEVNALASAGE-----KLARGATLYVTLEP 70
Query: 126 CAM------CAGAIIHVRLGEIIYGT 145
C+ C AII + ++ G
Sbjct: 71 CSHHGKTPPCVDAIIEAGIKRVVVGV 96
|
Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain. Length = 115 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-11
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 459 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 517
PYANG +H+GH L D+ ++ + G + +V G D HG PIE+ +K ++P
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTP 68
Query: 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
E+ +K E+ K DF +LGI +D +T + F +++ GY+Y
Sbjct: 69 QELADKYH-------EEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIY 119
|
Length = 556 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-11
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 1609 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 1667
PYANG +H+GH L D+ ++ + G + +V G D HG PIE+ +K ++P
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTP 68
Query: 1668 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
E+ +K E+ K DF +LGI +D +T + F +++ GY+Y
Sbjct: 69 QELADKYH-------EEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIY 119
|
Length = 556 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 2e-11
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PYANG IH+GH V I DI V++ M G + +V D HG PI ++ EK ++P
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPE 67
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA---FGIIFKKGY 575
E+ + + K DF GI +DN T E N A + + + GY
Sbjct: 68 ELIARYH-------AEHKRDFAGFGI--SFDNYGSTHS---EENRELAQEIYLKLKENGY 115
Query: 576 VY 577
+Y
Sbjct: 116 IY 117
|
Length = 673 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 2e-11
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PYANG IH+GH V I DI V++ M G + +V D HG PI ++ EK ++P
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPE 67
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRA---FGIIFKKGY 1725
E+ + + K DF GI +DN T E N A + + + GY
Sbjct: 68 ELIARYH-------AEHKRDFAGFGI--SFDNYGSTHS---EENRELAQEIYLKLKENGY 115
Query: 1726 VY 1727
+Y
Sbjct: 116 IY 117
|
Length = 673 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 91/273 (33%)
Query: 805 IEMFEHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG 863
++++E ++ + P+ + L QWF+ K + +E + + K+ +P
Sbjct: 108 LKLYEKGL--AYKKEAPVNWCKLLDQWFL------KYSETEWKEKLLKDLEKLDGWP--- 156
Query: 864 KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923
+ +++M N SRQR+WG PI +
Sbjct: 157 -EEVRAMQENWIG--CSRQRYWGTPIPW-------------------------------- 181
Query: 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI----------THQTVIRGSHKKQLIF--- 970
DT++ DS Q + F
Sbjct: 182 -------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW 222
Query: 971 -PADLYLEGSDQ-------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 1022
P D+Y+ G + R F+ L L P K L+ G V+ +G+KMSKS
Sbjct: 223 YPVDIYIGGKEHAPNHLLYSR--FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKS 279
Query: 1023 KGNIIKPQKLCNLFGAEILRLWVAST-DYSKDL 1054
KGN++ P + +GA+ RL++ D
Sbjct: 280 KGNVVTPDEAIKKYGADAARLYILFAAPPDADF 312
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 54/273 (19%), Positives = 94/273 (34%), Gaps = 91/273 (33%)
Query: 1955 IEMFEHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG 2013
++++E ++ + P+ + L QWF+ K + +E + + K+ +P
Sbjct: 108 LKLYEKGL--AYKKEAPVNWCKLLDQWFL------KYSETEWKEKLLKDLEKLDGWP--- 156
Query: 2014 KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073
+ +++M N SRQR+WG PI +
Sbjct: 157 -EEVRAMQENWIG--CSRQRYWGTPIPW-------------------------------- 181
Query: 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGI----------THQTVIRGSHKKQLIF--- 2120
DT++ DS Q + F
Sbjct: 182 -------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW 222
Query: 2121 -PADLYLEGSDQ-------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 2172
P D+Y+ G + R F+ L L P K L+ G V+ +G+KMSKS
Sbjct: 223 YPVDIYIGGKEHAPNHLLYSR--FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKS 279
Query: 2173 KGNIIKPQKLCNLFGAEILRLWVAST-DYSKDL 2204
KGN++ P + +GA+ RL++ D
Sbjct: 280 KGNVVTPDEAIKKYGADAARLYILFAAPPDADF 312
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 24/100 (24%)
Query: 68 VGAVLVKNNLVISYGYNQ------------QITRNDP---------TAHAEIIALRMASK 106
VGAV+VK+ +IS GYN + P T HAE A+ A++
Sbjct: 22 VGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAAR 81
Query: 107 LLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTP 146
+ + +YVTL PC CA II + +++Y P
Sbjct: 82 HGVS---LEGATLYVTLFPCIECAKLIIQAGIKKVVYAEP 118
|
Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Length = 131 |
| >gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-10
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 31/184 (16%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANG-DIHIGHAVNKILKDIIVKFYN 1634
EP W + W+E + + ++PKF + D PY +G +H+GH DI+ ++
Sbjct: 86 EPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKR 145
Query: 1635 MDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGI 1694
M G++ + G+D G+P E Y IE + + I + + LG
Sbjct: 146 MQGYNVLHPMGWDAFGLPAE-----QYA-----IETGTHPKITTLKNIARFRSQLKSLGF 195
Query: 1695 LGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
+WD T + FL + K+G Y PVNWC + LA
Sbjct: 196 SYDWDREISTTEPEYYKWTQWIFLQ----------LLKRGLAYQAEVPVNWCPALGTVLA 245
Query: 1745 EAEI 1748
E+
Sbjct: 246 NEEV 249
|
Length = 963 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 9e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1008 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
+GF+ +D G+KMSKS GN I + L + E+LRL++ S+ Y L S E+L +
Sbjct: 259 NGFLNID--GEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKK 316
Query: 1067 TYRRIRNTLRFLLANTSDFNPN 1088
R+ N LR L D
Sbjct: 317 ALERLYNALRRLRDLAGDAELA 338
|
Length = 464 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 9e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 2158 HGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
+GF+ +D G+KMSKS GN I + L + E+LRL++ S+ Y L S E+L +
Sbjct: 259 NGFLNID--GEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKK 316
Query: 2217 TYRRIRNTLRFLLANTSDFNPN 2238
R+ N LR L D
Sbjct: 317 ALERLYNALRRLRDLAGDAELA 338
|
Length = 464 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-09
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 1061
+ ++ +GFV+ +GKKMSKSKGN+I +K +GA+++RL++ S+ + +D + +
Sbjct: 563 RGIVVNGFVL-LEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEV 621
Query: 1062 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR- 1120
V R + L+ + IDK+ +++ N I+
Sbjct: 622 ESVRRQLERFYELAKELIEIGGEEELRF----------IDKW-LLSRLN---RIIKETTE 667
Query: 1121 -MYEFHMIVSKLQIYCSEDLGSFYLDILKD-RLYTTKKNSHARRSAQT--SIWHINQSLL 1176
M F +Q +FY ++L D R Y + + + IW +
Sbjct: 668 AMESFQ-TRDAVQE-------AFY-ELLNDLRWYLRRVGEANNKVLREVLEIW------I 712
Query: 1177 RLISPILSFTSEEAWSIFSDKNF 1199
RL++P +EE W + F
Sbjct: 713 RLLAPFTPHLAEELWHKLGGEGF 735
|
Length = 897 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-09
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 2211
+ ++ +GFV+ +GKKMSKSKGN+I +K +GA+++RL++ S+ + +D + +
Sbjct: 563 RGIVVNGFVL-LEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEV 621
Query: 2212 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR- 2270
V R + L+ + IDK+ +++ N I+
Sbjct: 622 ESVRRQLERFYELAKELIEIGGEEELRF----------IDKW-LLSRLN---RIIKETTE 667
Query: 2271 -MYEFHMIVSKLQIYCSEDLGSFYLDILKD-RLYTTKKNSHARRSAQT--SIWHINQSLL 2326
M F +Q +FY ++L D R Y + + + IW +
Sbjct: 668 AMESFQ-TRDAVQE-------AFY-ELLNDLRWYLRRVGEANNKVLREVLEIW------I 712
Query: 2327 RLISPILSFTSEEAWSIFSDKNF 2349
RL++P +EE W + F
Sbjct: 713 RLLAPFTPHLAEELWHKLGGEGF 735
|
Length = 897 |
| >gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
VG V+VKN ++ G +Q+ HAE+ ALR A + K YVTLEPC
Sbjct: 20 LVGCVIVKNGEIVGEGAHQKAGE----PHAEVHALRQAGENA------KGATAYVTLEPC 69
Query: 127 AM------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQC 180
+ CA AII + +++ G ++ + +T G+++++
Sbjct: 70 SHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIE----VTFGILKEEA 125
Query: 181 EKLLKSF 187
E+L K F
Sbjct: 126 ERLNKGF 132
|
This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]. Length = 344 |
| >gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-09
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 64 GEVPVGAVLVKNNL--VISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV 121
VGA LV + G N + HAE AL A + +K +YV
Sbjct: 16 SNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNA----GSEGDTKGQMLYV 71
Query: 122 TLEPCAMCAGAIIHVRLGEII 142
L PC CA II + + ++I
Sbjct: 72 ALSPCGACAQLIIELGIKDVI 92
|
The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Length = 96 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (151), Expect = 5e-09
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 47/186 (25%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPK--FILHDGPPYANGDIHIGHAVNKILKDIIVKFY 1633
E W K W+E K + K + + K ++L D PY +G +H+GH N + D+I ++
Sbjct: 11 EKKWQKYWEENKTF----KTTEDSSKKYYVL-DMFPYPSGGLHMGHVRNYTIGDVIARYK 65
Query: 1634 NMDGFDAQYV--P-GYDCHGMPIEIQIEKLYGKNLSPIEIQNKA--RALAYEKIEQQKMD 1688
M G++ V P G+D G+P E N + I+ YE I K
Sbjct: 66 RMQGYN---VLHPMGWDAFGLPAE---------NAA---IKTGTHPAEWTYENIANMKKQ 110
Query: 1689 FMRLGILGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 1738
LG +W T D FL +++KG Y PVNWC
Sbjct: 111 LKSLGFSYDWSREIATCDPEYYKWTQWIFL----------KLYEKGLAYRKESPVNWCPV 160
Query: 1739 CKSALA 1744
+ LA
Sbjct: 161 DGTVLA 166
|
Length = 805 |
| >gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 28/134 (20%)
Query: 57 AKLALIAGEVP---VGAVLVKNNLVISYGYNQQ-------ITRNDP-------------- 92
A+L + P VGAV+VK+ +I+ GYN I R
Sbjct: 16 AELVALRSTCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCC 75
Query: 93 -TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTG 151
T HAE A+ A++ + +YVT PC+ CA II + E++Y P
Sbjct: 76 RTLHAEQNAILQAARHG---VGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTET 132
Query: 152 ACGSIINLFQEKKL 165
L +E +
Sbjct: 133 VAPYSQELLEEAGV 146
|
Length = 164 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-08
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSKDLSISNEIL 1061
+ +HG++ +G KMSKS GN++ P L FGA+ILR + + KD S E
Sbjct: 313 TQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDF 371
Query: 1062 NRVVETYRRIRNTLRFLLANT-----SDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 1116
V + N L LL T FN + I+D E DK + I ++I
Sbjct: 372 VERVNA--DLANKLGNLLNRTLGFIKKYFNGVLPSEDITD--EEDKKLLKLINEALEQID 427
Query: 1117 SHYRMYEFH-MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 1175
+EF + +++ D G+ Y+D K + K S + + + L
Sbjct: 428 EAIESFEFRKALREIMKLA---DRGNKYIDENKP--WELFKQSPRLKELLAVCSMLIRVL 482
Query: 1176 LRLISPILSFTSEEAWSIF 1194
L+ PI+ SE+
Sbjct: 483 SILLYPIMPKLSEKILKFL 501
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-08
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSKDLSISNEIL 2211
+ +HG++ +G KMSKS GN++ P L FGA+ILR + + KD S E
Sbjct: 313 TQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDF 371
Query: 2212 NRVVETYRRIRNTLRFLLANT-----SDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 2266
V + N L LL T FN + I+D E DK + I ++I
Sbjct: 372 VERVNA--DLANKLGNLLNRTLGFIKKYFNGVLPSEDITD--EEDKKLLKLINEALEQID 427
Query: 2267 SHYRMYEFH-MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 2325
+EF + +++ D G+ Y+D K + K S + + + L
Sbjct: 428 EAIESFEFRKALREIMKLA---DRGNKYIDENKP--WELFKQSPRLKELLAVCSMLIRVL 482
Query: 2326 LRLISPILSFTSEEAWSIF 2344
L+ PI+ SE+
Sbjct: 483 SILLYPIMPKLSEKILKFL 501
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-08
Identities = 96/504 (19%), Positives = 186/504 (36%), Gaps = 127/504 (25%)
Query: 465 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI----------EIQIEKLYGKN 514
+H+GH + D+I ++ M G++ + + G PI + + +LY K+
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELY-KS 59
Query: 515 LS--PIEIQNK---ARALA-YEKIEQQKMDFMRLGILGEWDNSYKTMD-----FLN-EAN 562
L P E K + Y E+ K D R+G +W + T D F+ +
Sbjct: 60 LYGIPEEELEKFKDPEYIVEYFS-EEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFR 118
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL--------AEAEIEYKKKYDFSIYVGFSF 614
+L+ +KG + G PV +C + + + E EI ++++
Sbjct: 119 KLK------EKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV-----EYTL------ 161
Query: 615 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 674
+K S + T P TI L V+P+ Y + + I
Sbjct: 162 -----------IKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGE---KWI 207
Query: 675 LAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
++ K +K F+ II KG +L +P++ ++ PI D++
Sbjct: 208 VS----KEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVTGKEV------PILPADFVD 257
Query: 732 VDSGTGIVHSAPAYGIEDFLIFK--KQNMKDSDIINPV---------------------- 767
D+GTG+V S PA+ D++ + K+N + D+I P+
Sbjct: 258 PDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGI 317
Query: 768 -------MDD------------GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 808
+++ G + G + +A + I L + + F
Sbjct: 318 KSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEF 377
Query: 809 EHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRL 867
+ ++C R T + + QWFI+ + + +E A A++ ++ P +
Sbjct: 378 SNRPVYC-RCGTECVVKVVKDQWFIDYS----DPE--WKELAHKALDNMEIIPEEYRKEF 430
Query: 868 KSMILNRPDWTISRQRHWGVPIAF 891
++ I D +R+R G + +
Sbjct: 431 ENTIDWLKDRACARRRGLGTRLPW 454
|
Length = 897 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-08
Identities = 96/504 (19%), Positives = 186/504 (36%), Gaps = 127/504 (25%)
Query: 1615 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI----------EIQIEKLYGKN 1664
+H+GH + D+I ++ M G++ + + G PI + + +LY K+
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELY-KS 59
Query: 1665 LS--PIEIQNK---ARALA-YEKIEQQKMDFMRLGILGEWDNSYKTMD-----FLN-EAN 1712
L P E K + Y E+ K D R+G +W + T D F+ +
Sbjct: 60 LYGIPEEELEKFKDPEYIVEYFS-EEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFR 118
Query: 1713 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL--------AEAEIEYKKKYDFSIYVGFSF 1764
+L+ +KG + G PV +C + + + E EI ++++
Sbjct: 119 KLK------EKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV-----EYTL------ 161
Query: 1765 SEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 1824
+K S + T P TI L V+P+ Y + + I
Sbjct: 162 -----------IKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGE---KWI 207
Query: 1825 LAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 1881
++ K +K F+ II KG +L +P++ ++ PI D++
Sbjct: 208 VS----KEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVTGKEV------PILPADFVD 257
Query: 1882 VDSGTGIVHSAPAYGIEDFLIFK--KQNMKDSDIINPV---------------------- 1917
D+GTG+V S PA+ D++ + K+N + D+I P+
Sbjct: 258 PDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGI 317
Query: 1918 -------MDD------------GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958
+++ G + G + +A + I L + + F
Sbjct: 318 KSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEF 377
Query: 1959 EHSYMHCWRHKTPIIYRTTL-QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRL 2017
+ ++C R T + + QWFI+ + + +E A A++ ++ P +
Sbjct: 378 SNRPVYC-RCGTECVVKVVKDQWFIDYS----DPE--WKELAHKALDNMEIIPEEYRKEF 430
Query: 2018 KSMILNRPDWTISRQRHWGVPIAF 2041
++ I D +R+R G + +
Sbjct: 431 ENTIDWLKDRACARRRGLGTRLPW 454
|
Length = 897 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-08
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
GFV V+ G+KMSKS GN + L + E+LR ++ S Y L+ S E L + +
Sbjct: 258 GFVTVN--GEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKA 315
Query: 1068 YRRIRNTLRFLLANTSDFNPNINI 1091
R+ N L D +
Sbjct: 316 LERLYNALAETALGEDDEALLAEL 339
|
Length = 463 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-08
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
GFV V+ G+KMSKS GN + L + E+LR ++ S Y L+ S E L + +
Sbjct: 258 GFVTVN--GEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKA 315
Query: 2218 YRRIRNTLRFLLANTSDFNPNINI 2241
R+ N L D +
Sbjct: 316 LERLYNALAETALGEDDEALLAEL 339
|
Length = 463 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-07
Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 32/258 (12%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 1061
+ HGF+ +G+KMSKS+GN++ P +L +G + LR ++A D S E
Sbjct: 319 TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDF 377
Query: 1062 NRVVETYRRIRNTL---------RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 1112
R+ L R L F+ + D +E D+ +
Sbjct: 378 ------VERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPD-LEEDEELLALAREAL 430
Query: 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 1172
+ + YEF + ++ S + Y+D + K R T ++
Sbjct: 431 EAVAEAMEKYEFRKALEEIMALASR--ANKYIDEQAP--WKLAKEDKRER-LATVLYLAL 485
Query: 1173 QS---LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM 1229
+ L L+ P + T+E+ W +E FT L + P + K +
Sbjct: 486 ELVRVLAILLYPFMPETAEKIWDQLG-----LEEDARNFTWLGARQPLLPGHKLGPPEP- 539
Query: 1230 ILKKIRSKVMQKLEKIRS 1247
+ +I + +++L +
Sbjct: 540 LFPRIEEEAIEELIEALK 557
|
Length = 558 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-07
Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 32/258 (12%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 2211
+ HGF+ +G+KMSKS+GN++ P +L +G + LR ++A D S E
Sbjct: 319 TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDF 377
Query: 2212 NRVVETYRRIRNTL---------RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 2262
R+ L R L F+ + D +E D+ +
Sbjct: 378 ------VERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPD-LEEDEELLALAREAL 430
Query: 2263 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 2322
+ + YEF + ++ S + Y+D + K R T ++
Sbjct: 431 EAVAEAMEKYEFRKALEEIMALASR--ANKYIDEQAP--WKLAKEDKRER-LATVLYLAL 485
Query: 2323 QS---LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM 2379
+ L L+ P + T+E+ W +E FT L + P + K +
Sbjct: 486 ELVRVLAILLYPFMPETAEKIWDQLG-----LEEDARNFTWLGARQPLLPGHKLGPPEP- 539
Query: 2380 ILKKIRSKVMQKLEKIRS 2397
+ +I + +++L +
Sbjct: 540 LFPRIEEEAIEELIEALK 557
|
Length = 558 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-07
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 945 TLDVWFDS--------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 996
+ VWFD+ G + + +PAD++L G D R FH+
Sbjct: 221 VIYVWFDALTNYLTALGYPDDEELLAELFNKY-WPADVHLIGKDILR--FHAVY--WPAF 275
Query: 997 NKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST----- 1048
+A K + HGF+ G+KMSKS GN+I P L + +G + +R ++
Sbjct: 276 LMAAGLPLPKRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQ 334
Query: 1049 --DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDF---NPNINIIKISDMVEIDKY 1103
D+S++ I +N + N L L T N + + + + E D+
Sbjct: 335 DGDFSREAFI--NRINADLA------NDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEA 386
Query: 1104 AIINITNLQKEILSHYRMYEFH 1125
+ L + + + F
Sbjct: 387 LLEAAAALLERVRAAMDNLAFD 408
|
Length = 511 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-07
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 35/202 (17%)
Query: 2095 TLDVWFDS--------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 2146
+ VWFD+ G + + +PAD++L G D R FH+
Sbjct: 221 VIYVWFDALTNYLTALGYPDDEELLAELFNKY-WPADVHLIGKDILR--FHAVY--WPAF 275
Query: 2147 NKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST----- 2198
+A K + HGF+ G+KMSKS GN+I P L + +G + +R ++
Sbjct: 276 LMAAGLPLPKRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQ 334
Query: 2199 --DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDF---NPNINIIKISDMVEIDKY 2253
D+S++ I +N + N L L T N + + + + E D+
Sbjct: 335 DGDFSREAFI--NRINADLA------NDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEA 386
Query: 2254 AIINITNLQKEILSHYRMYEFH 2275
+ L + + + F
Sbjct: 387 LLEAAAALLERVRAAMDNLAFD 408
|
Length = 511 |
| >gnl|CDD|203527 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG and IleRS | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 1336
+KC RCW+Y DVG+ LC RC
Sbjct: 1 GEKCPRCWNYIEDVGQGGRSTFLCPRCQKV 30
|
This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23. Length = 30 |
| >gnl|CDD|203527 pfam06827, zf-FPG_IleRS, Zinc finger found in FPG and IleRS | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2457 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 2486
+KC RCW+Y DVG+ LC RC
Sbjct: 1 GEKCPRCWNYIEDVGQGGRSTFLCPRCQKV 30
|
This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23. Length = 30 |
| >gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 1064 VVETYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 1119
VE R N L RF+L N D + + D++ + + +E+
Sbjct: 5 RVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLS--LADRWILSRLNKTVEEVTEAL 62
Query: 1120 RMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 1174
Y F + L +C +YL+++K RLY ++ +++A+ +++++ ++
Sbjct: 63 ENYRFSEAATALYEFFWNDFCD-----WYLELVKPRLY--GEDEEEKKAARATLYYVLET 115
Query: 1175 LLRLISPILSFTSEEAWSIF 1194
+LRL+ P + F +EE W
Sbjct: 116 ILRLLHPFMPFITEELWQRL 135
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135 |
| >gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 2214 VVETYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 2269
VE R N L RF+L N D + + D++ + + +E+
Sbjct: 5 RVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLS--LADRWILSRLNKTVEEVTEAL 62
Query: 2270 RMYEFHMIVSKLQ-----IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324
Y F + L +C +YL+++K RLY ++ +++A+ +++++ ++
Sbjct: 63 ENYRFSEAATALYEFFWNDFCD-----WYLELVKPRLY--GEDEEEKKAARATLYYVLET 115
Query: 2325 LLRLISPILSFTSEEAWSIF 2344
+LRL+ P + F +EE W
Sbjct: 116 ILRLLHPFMPFITEELWQRL 135
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 8e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 1043
P+K LLT G V KMSKSKGN++ P + +GA+ RL
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARL 595
|
Length = 805 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 8e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193
P+K LLT G V KMSKSKGN++ P + +GA+ RL
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARL 595
|
Length = 805 |
| >gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-06
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 31/161 (19%)
Query: 449 RPKFILHDGPPYANG-DIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+PKF + D PY +G +H+GH DI+ ++ M G++ + G+D G+P E
Sbjct: 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAE--- 165
Query: 508 EKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----------F 557
Y IE + + I + + LG +WD T + F
Sbjct: 166 --QYA-----IETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIF 218
Query: 558 LNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598
L + K+G Y PVNWC + LA E+
Sbjct: 219 LQ----------LLKRGLAYQAEVPVNWCPALGTVLANEEV 249
|
Length = 963 |
| >gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-06
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 40/151 (26%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--P-GYDCHGMPIEIQIEKLYGKNL 515
PY +G +H+GH N + D+I ++ M G++ V P G+D G+P E N
Sbjct: 41 PYPSGGLHMGHVRNYTIGDVIARYKRMQGYN---VLHPMGWDAFGLPAE---------NA 88
Query: 516 SPIEIQNKA--RALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----------FLNEANE 563
+ I+ YE I K LG +W T D FL
Sbjct: 89 A---IKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFL----- 140
Query: 564 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 594
+++KG Y PVNWC + LA
Sbjct: 141 -----KLYEKGLAYRKESPVNWCPVDGTVLA 166
|
Length = 805 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y NG HIGHA I D + ++ + G+D ++ G D HG I+ EK +P E
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK---AGKTPQE 70
|
Length = 648 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y NG HIGHA I D + ++ + G+D ++ G D HG I+ EK +P E
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK---AGKTPQE 70
|
Length = 648 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-05
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 948 VWFDSGITHQTVI----RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI---ILNKSA 1000
VW D+ + + T + + +PAD++L G D R FH+ I I+ +
Sbjct: 227 VWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHA-----IYWPIMLMAL 279
Query: 1001 ---PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042
K + HG+ + K KMSKSKGN++ P++L + +G + LR
Sbjct: 280 GLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALR 323
|
Length = 648 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-05
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 2098 VWFDSGITHQTVI----RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI---ILNKSA 2150
VW D+ + + T + + +PAD++L G D R FH+ I I+ +
Sbjct: 227 VWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHA-----IYWPIMLMAL 279
Query: 2151 ---PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 2192
K + HG+ + K KMSKSKGN++ P++L + +G + LR
Sbjct: 280 GLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALR 323
|
Length = 648 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 2e-05
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 917 LNGIEIWQNLDIKEF-LGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 969
LN ++ W +++F + V++ T+ VWFD+ + + + + +K+Q +
Sbjct: 254 LNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLE 313
Query: 970 ------FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKS 1022
+PA L+L G D R FH+ +++++ K + HGF+ G KM KS
Sbjct: 314 TAVSFGWPASLHLIGKDILR--FHAVYWPAMLMSAGLELPKMVFGHGFLT-KDGMKMGKS 370
Query: 1023 KGNIIKPQKLCNLFGAEILR-LWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLAN 1081
GN ++P +L FG + +R ++ ++ D S + ++V + + NT+ LL
Sbjct: 371 LGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAH--LANTIGNLLNR 428
Query: 1082 T 1082
T
Sbjct: 429 T 429
|
Length = 616 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 2e-05
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 2067 LNGIEIWQNLDIKEF-LGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 2119
LN ++ W +++F + V++ T+ VWFD+ + + + + +K+Q +
Sbjct: 254 LNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLE 313
Query: 2120 ------FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKS 2172
+PA L+L G D R FH+ +++++ K + HGF+ G KM KS
Sbjct: 314 TAVSFGWPASLHLIGKDILR--FHAVYWPAMLMSAGLELPKMVFGHGFLT-KDGMKMGKS 370
Query: 2173 KGNIIKPQKLCNLFGAEILR-LWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLAN 2231
GN ++P +L FG + +R ++ ++ D S + ++V + + NT+ LL
Sbjct: 371 LGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAH--LANTIGNLLNR 428
Query: 2232 T 2232
T
Sbjct: 429 T 429
|
Length = 616 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 86/239 (35%)
Query: 823 IYRTTLQWFINMDK--------IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNR 874
+R +F + K + KN E+A N++ SW K+ LK
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENAR---NEVL---SWLKEGLK------ 180
Query: 875 PDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG 933
D +I+R WG+P+
Sbjct: 181 -DLSITRDLFDWGIPVPLD----------------------------------------- 198
Query: 934 DDAVNYKKSNDTLDVWFDSGITHQTVI-------RGSHKKQLIFPADLYLEGSDQHRGWF 986
V Y VWFD+ I + + S + +P ++ G D R F
Sbjct: 199 PGKVIY--------VWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--F 248
Query: 987 HSSLLTSIILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042
H+ +++L A ++ HG++ +GKKMSKS+GN++ P L +GA+ LR
Sbjct: 249 HAIYWPAMLL--GAGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALR 304
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-05
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 86/239 (35%)
Query: 1973 IYRTTLQWFINMDK--------IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNR 2024
+R +F + K + KN E+A N++ SW K+ LK
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENAR---NEVL---SWLKEGLK------ 180
Query: 2025 PDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG 2083
D +I+R WG+P+
Sbjct: 181 -DLSITRDLFDWGIPVPLD----------------------------------------- 198
Query: 2084 DDAVNYKKSNDTLDVWFDSGITHQTVI-------RGSHKKQLIFPADLYLEGSDQHRGWF 2136
V Y VWFD+ I + + S + +P ++ G D R F
Sbjct: 199 PGKVIY--------VWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--F 248
Query: 2137 HSSLLTSIILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 2192
H+ +++L A ++ HG++ +GKKMSKS+GN++ P L +GA+ LR
Sbjct: 249 HAIYWPAMLL--GAGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALR 304
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 1061
+ HG++ +G KMSKS+GN++ P +L + +G + LR ++A KD S E
Sbjct: 310 TQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF 368
Query: 1062 -NRV 1064
RV
Sbjct: 369 VERV 372
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 2153 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 2211
+ HG++ +G KMSKS+GN++ P +L + +G + LR ++A KD S E
Sbjct: 310 TQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF 368
Query: 2212 -NRV 2214
RV
Sbjct: 369 VERV 372
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-05
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 1008 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
H + +KMSKS GN + + + EILR ++ S Y L S E+L
Sbjct: 255 HNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNA 314
Query: 1068 YRRIRNTLRFL 1078
R+ LR L
Sbjct: 315 LERLYKALRVL 325
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-05
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 2158 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
H + +KMSKS GN + + + EILR ++ S Y L S E+L
Sbjct: 255 HNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNA 314
Query: 2218 YRRIRNTLRFL 2228
R+ LR L
Sbjct: 315 LERLYKALRVL 325
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
KF + Y NG HIGHA + D++ +F + G+D ++ G D HG I+ + E+
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE- 60
Query: 511 YGKNLSPIEI 520
+SP E+
Sbjct: 61 --AGISPQEL 68
|
Length = 511 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
KF + Y NG HIGHA + D++ +F + G+D ++ G D HG I+ + E+
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE- 60
Query: 1661 YGKNLSPIEI 1670
+SP E+
Sbjct: 61 --AGISPQEL 68
|
Length = 511 |
| >gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-04
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 16/73 (21%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VG V+VK+ ++ GY+Q+ +P HAE+ ALRMA + +K YVTLEPC+
Sbjct: 27 VGCVIVKDGEIVGEGYHQR--AGEP--HAEVHALRMAGEK------AKGATAYVTLEPCS 76
Query: 128 M------CAGAII 134
C A+I
Sbjct: 77 HHGRTPPCCDALI 89
|
Length = 367 |
| >gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 1059 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 1118
E L + R+ L F P + E D+ + + K +
Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPK---WDNELLEEADRELLARLQEFIKRTTNA 58
Query: 1119 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 1178
+ V +L + +E ++YLD LK L T + + ++ L +L
Sbjct: 59 LEALDPTTAVQELFKFTNEL--NWYLDELKPALQTEELREAVLAVLRAALVV----LTKL 112
Query: 1179 ISPIL 1183
++P
Sbjct: 113 LAPFT 117
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. Length = 117 |
| >gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 2209 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 2268
E L + R+ L F P + E D+ + + K +
Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPK---WDNELLEEADRELLARLQEFIKRTTNA 58
Query: 2269 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 2328
+ V +L + +E ++YLD LK L T + + ++ L +L
Sbjct: 59 LEALDPTTAVQELFKFTNEL--NWYLDELKPALQTEELREAVLAVLRAALVV----LTKL 112
Query: 2329 ISPIL 2333
++P
Sbjct: 113 LAPFT 117
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. Length = 117 |
| >gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-04
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTA---HAEIIALRMASKLLNNYRFSKNYKIYVTLE 124
VG V+VK+ ++ G++ P A HAE+ ALR A L ++N YV+LE
Sbjct: 56 VGCVIVKDGRIVGEGFH-------PKAGQPHAEVFALRDAGDL------AENATAYVSLE 102
Query: 125 PCAM------CAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQK 178
PC C A+I ++ ++ G I ++ + +T GV ++
Sbjct: 103 PCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIE----VTVGVEEE 158
Query: 179 QCEKLLKSFF 188
C KL ++F
Sbjct: 159 LCRKLNEAFI 168
|
Length = 380 |
| >gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-04
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 988 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047
SS + IL P + ++ G KMS SKGN+I + E LR +
Sbjct: 251 SSRIAREILGGEPPEP--FPYELILLKGGGKMSSSKGNVITIEDWLEYAPPESLRFLMFR 308
Query: 1048 TDYSKDLSISNEILNRVVETYRRIRN 1073
K + +++ ++V+ Y R+
Sbjct: 309 VKPKKAKRLDFDVIPKLVDEYDRLER 334
|
This family includes only lysyl tRNA synthetases from prokaryotes. Length = 357 |
| >gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-04
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 2138 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197
SS + IL P + ++ G KMS SKGN+I + E LR +
Sbjct: 251 SSRIAREILGGEPPEP--FPYELILLKGGGKMSSSKGNVITIEDWLEYAPPESLRFLMFR 308
Query: 2198 TDYSKDLSISNEILNRVVETYRRIRN 2223
K + +++ ++V+ Y R+
Sbjct: 309 VKPKKAKRLDFDVIPKLVDEYDRLER 334
|
This family includes only lysyl tRNA synthetases from prokaryotes. Length = 357 |
| >gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 988 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047
+ I P + + F+ G KMS SKGN+I P + E+LR A
Sbjct: 247 GKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304
Query: 1048 T-DYSKDLSISNEILNRVVETYR 1069
+ K + +IL E R
Sbjct: 305 RKNPEKHIGFDLDILRLYDEYDR 327
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Length = 353 |
| >gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 2138 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197
+ I P + + F+ G KMS SKGN+I P + E+LR A
Sbjct: 247 GKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304
Query: 2198 T-DYSKDLSISNEILNRVVETYR 2219
+ K + +IL E R
Sbjct: 305 RKNPEKHIGFDLDILRLYDEYDR 327
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Length = 353 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 0.002
Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 60/237 (25%)
Query: 819 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 878
TP R T +F+++ + + + S N + F +W K+ LK
Sbjct: 179 STPEF-RETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLK-------PRA 230
Query: 879 ISRQRHWGVPIAFFIHKKSGKLHPKTL-----ELIELIAKKIELNGIEIWQNLDIKEFLG 933
I+R WG+P+ + + K +I I+ E KEF
Sbjct: 231 ITRDLDWGIPVPWPGFEG------KVFYVWFDAVIGYISASKEW-AERTGDPEAWKEF-- 281
Query: 934 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTS 993
W D Y G D FHS + +
Sbjct: 282 ---------------WLDPET-----------------KSYYFIGKDNIP--FHSIIWPA 307
Query: 994 IILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047
++L P K +++ ++ +G K SKS+G I + + LR ++A+
Sbjct: 308 MLLGSGEPLKLPDEIVSSEYL-TLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAA 363
|
Length = 556 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 0.002
Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 60/237 (25%)
Query: 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 2028
TP R T +F+++ + + + S N + F +W K+ LK
Sbjct: 179 STPEF-RETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLK-------PRA 230
Query: 2029 ISRQRHWGVPIAFFIHKKSGKLHPKTL-----ELIELIAKKIELNGIEIWQNLDIKEFLG 2083
I+R WG+P+ + + K +I I+ E KEF
Sbjct: 231 ITRDLDWGIPVPWPGFEG------KVFYVWFDAVIGYISASKEW-AERTGDPEAWKEF-- 281
Query: 2084 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTS 2143
W D Y G D FHS + +
Sbjct: 282 ---------------WLDPET-----------------KSYYFIGKDNIP--FHSIIWPA 307
Query: 2144 IILNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197
++L P K +++ ++ +G K SKS+G I + + LR ++A+
Sbjct: 308 MLLGSGEPLKLPDEIVSSEYL-TLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAA 363
|
Length = 556 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 1015 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 1054
G+KMSKS GN I + + E+LRL + S+ Y L
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPL 210
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2165 KGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 2204
G+KMSKS GN I + + E+LRL + S+ Y L
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPL 210
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.003
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 995 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKD 1053
IL P + +D KG+K+SKSKGN+I + E LRL++ A +K
Sbjct: 259 ILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKR 316
Query: 1054 LSISNEILNRVVETYRR 1070
L + ++V+ Y R
Sbjct: 317 LDFDV--IPKLVDEYDR 331
|
Length = 510 |
| >gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.003
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 2145 ILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKD 2203
IL P + +D KG+K+SKSKGN+I + E LRL++ A +K
Sbjct: 259 ILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKR 316
Query: 2204 LSISNEILNRVVETYRR 2220
L + ++V+ Y R
Sbjct: 317 LDFDV--IPKLVDEYDR 331
|
Length = 510 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2492 | |||
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| KOG0433|consensus | 937 | 100.0 | ||
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| KOG0433|consensus | 937 | 100.0 | ||
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0434|consensus | 1070 | 100.0 | ||
| KOG0434|consensus | 1070 | 100.0 | ||
| KOG0432|consensus | 995 | 100.0 | ||
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| KOG0432|consensus | 995 | 100.0 | ||
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| KOG0435|consensus | 876 | 100.0 | ||
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| KOG0437|consensus | 1080 | 100.0 | ||
| KOG0435|consensus | 876 | 100.0 | ||
| KOG0437|consensus | 1080 | 100.0 | ||
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| KOG0436|consensus | 578 | 100.0 | ||
| KOG0436|consensus | 578 | 100.0 | ||
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| COG1385 | 246 | Uncharacterized protein conserved in bacteria [Fun | 100.0 | |
| TIGR00046 | 240 | RNA methyltransferase, RsmE family. Members of thi | 100.0 | |
| PF04452 | 225 | Methyltrans_RNA: RNA methyltransferase; InterPro: | 100.0 | |
| PRK11713 | 234 | 16S ribosomal RNA methyltransferase RsmE; Provisio | 100.0 | |
| KOG1247|consensus | 567 | 100.0 | ||
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| KOG1247|consensus | 567 | 100.0 | ||
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| COG1385 | 246 | Uncharacterized protein conserved in bacteria [Fun | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PF04452 | 225 | Methyltrans_RNA: RNA methyltransferase; InterPro: | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| TIGR00046 | 240 | RNA methyltransferase, RsmE family. Members of thi | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 99.98 | |
| PRK11713 | 234 | 16S ribosomal RNA methyltransferase RsmE; Provisio | 99.97 | |
| PRK10860 | 172 | tRNA-specific adenosine deaminase; Provisional | 99.97 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 99.97 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 99.97 | |
| COG0590 | 152 | CumB Cytosine/adenosine deaminases [Nucleotide tra | 99.97 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.97 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.97 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.97 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.96 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.95 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.94 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.94 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.94 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.94 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.93 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.93 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.92 | |
| PRK10786 | 367 | ribD bifunctional diaminohydroxyphosphoribosylamin | 99.91 | |
| PLN02807 | 380 | diaminohydroxyphosphoribosylaminopyrimidine deamin | 99.91 | |
| COG0117 | 146 | RibD Pyrimidine deaminase [Coenzyme metabolism] | 99.91 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.9 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.9 | |
| TIGR00326 | 344 | eubact_ribD riboflavin biosynthesis protein RibD. | 99.9 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.88 | |
| cd01285 | 109 | nucleoside_deaminase Nucleoside deaminases include | 99.88 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.88 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.87 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.87 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.87 | |
| PHA02588 | 168 | cd deoxycytidylate deaminase; Provisional | 99.87 | |
| KOG2007|consensus | 586 | 99.86 | ||
| cd01284 | 115 | Riboflavin_deaminase-reductase Riboflavin-specific | 99.86 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.86 | |
| KOG1018|consensus | 169 | 99.86 | ||
| TIGR02571 | 151 | ComEB ComE operon protein 2. This protein is found | 99.85 | |
| KOG2007|consensus | 586 | 99.85 | ||
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.83 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.83 | |
| PF13603 | 185 | tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P | 99.82 | |
| cd01286 | 131 | deoxycytidylate_deaminase Deoxycytidylate deaminas | 99.81 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.78 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.78 | |
| cd00786 | 96 | cytidine_deaminase-like Cytidine and deoxycytidyla | 99.78 | |
| PF00383 | 102 | dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam | 99.77 | |
| PF13603 | 185 | tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P | 99.75 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.75 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.7 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.69 | |
| COG2131 | 164 | ComEB Deoxycytidylate deaminase [Nucleotide transp | 99.67 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.66 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.66 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.62 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.59 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.59 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.53 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.49 | |
| KOG2771|consensus | 344 | 99.49 | ||
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.46 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.45 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.45 | |
| COG0590 | 152 | CumB Cytosine/adenosine deaminases [Nucleotide tra | 99.43 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.42 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.38 | |
| PRK10860 | 172 | tRNA-specific adenosine deaminase; Provisional | 99.36 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.35 | |
| KOG3127|consensus | 230 | 99.28 | ||
| cd01283 | 112 | cytidine_deaminase Cytidine deaminase zinc-binding | 99.25 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.24 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.23 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.16 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.15 | |
| KOG2771|consensus | 344 | 99.04 | ||
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.0 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 98.9 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 98.87 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 98.85 | |
| PRK14719 | 360 | bifunctional RNAse/5-amino-6-(5-phosphoribosylamin | 98.77 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.76 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.74 | |
| PF14439 | 136 | Bd3614-deam: Bd3614-like deaminase | 98.64 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 98.57 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 98.54 | |
| KOG1018|consensus | 169 | 98.47 | ||
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.4 | |
| TIGR00326 | 344 | eubact_ribD riboflavin biosynthesis protein RibD. | 98.32 | |
| PRK10786 | 367 | ribD bifunctional diaminohydroxyphosphoribosylamin | 98.29 | |
| cd01285 | 109 | nucleoside_deaminase Nucleoside deaminases include | 98.24 | |
| PLN02807 | 380 | diaminohydroxyphosphoribosylaminopyrimidine deamin | 98.15 | |
| TIGR01354 | 127 | cyt_deam_tetra cytidine deaminase, homotetrameric. | 98.0 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 97.85 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 97.83 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 97.65 | |
| PRK10425 | 258 | DNase TatD; Provisional | 97.6 | |
| PRK10812 | 265 | putative DNAse; Provisional | 97.56 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 97.39 | |
| cd01284 | 115 | Riboflavin_deaminase-reductase Riboflavin-specific | 97.37 | |
| PF06827 | 30 | zf-FPG_IleRS: Zinc finger found in FPG and IleRS; | 97.31 | |
| PHA02588 | 168 | cd deoxycytidylate deaminase; Provisional | 97.28 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 97.26 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 97.16 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 97.13 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 97.1 | |
| PF06827 | 30 | zf-FPG_IleRS: Zinc finger found in FPG and IleRS; | 97.05 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 97.02 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 97.01 | |
| COG0117 | 146 | RibD Pyrimidine deaminase [Coenzyme metabolism] | 96.92 | |
| PF00383 | 102 | dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam | 96.84 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 96.74 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 96.73 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 96.72 | |
| cd00786 | 96 | cytidine_deaminase-like Cytidine and deoxycytidyla | 96.71 | |
| cd01286 | 131 | deoxycytidylate_deaminase Deoxycytidylate deaminas | 96.7 | |
| PRK06848 | 139 | hypothetical protein; Validated | 96.68 | |
| TIGR02571 | 151 | ComEB ComE operon protein 2. This protein is found | 96.66 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 96.63 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 96.63 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 96.59 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 96.52 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 96.51 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 96.5 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 96.49 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 96.49 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 96.46 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 96.42 | |
| KOG3020|consensus | 296 | 96.34 | ||
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 96.29 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 96.28 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 96.24 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 96.23 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 96.23 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 96.22 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 96.22 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 96.21 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 96.21 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 96.17 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 96.13 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 96.13 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 96.08 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 96.07 | |
| COG0295 | 134 | Cdd Cytidine deaminase [Nucleotide transport and m | 96.07 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 96.0 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 95.95 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 95.9 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 95.85 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 95.83 | |
| PRK12411 | 132 | cytidine deaminase; Provisional | 95.79 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 95.77 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 95.76 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 95.75 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 95.69 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 95.69 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 95.56 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 95.55 | |
| PRK05578 | 131 | cytidine deaminase; Validated | 95.46 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 95.32 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 95.17 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 95.06 | |
| PRK08298 | 136 | cytidine deaminase; Validated | 94.93 | |
| TIGR01355 | 283 | cyt_deam_dimer cytidine deaminase, homodimeric. Th | 94.82 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 94.75 | |
| KOG0833|consensus | 173 | 94.71 | ||
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 94.58 | |
| PLN02402 | 303 | cytidine deaminase | 94.45 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 93.87 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 93.77 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 93.74 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 93.54 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 93.18 | |
| PRK09027 | 295 | cytidine deaminase; Provisional | 93.08 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 92.85 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 92.59 | |
| PRK14719 | 360 | bifunctional RNAse/5-amino-6-(5-phosphoribosylamin | 92.47 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 91.97 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 91.86 | |
| PLN02182 | 339 | cytidine deaminase | 91.77 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 91.74 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 91.48 | |
| PRK09027 | 295 | cytidine deaminase; Provisional | 91.36 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 90.72 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 90.05 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 90.03 | |
| KOG1147|consensus | 712 | 90.01 | ||
| PF14437 | 146 | MafB19-deam: MafB19-like deaminase | 89.78 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 89.68 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 89.63 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 89.45 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 88.58 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 88.55 | |
| KOG1147|consensus | 712 | 88.42 | ||
| COG2131 | 164 | ComEB Deoxycytidylate deaminase [Nucleotide transp | 88.42 | |
| KOG1148|consensus | 764 | 88.28 | ||
| cd01283 | 112 | cytidine_deaminase Cytidine deaminase zinc-binding | 88.2 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 88.11 | |
| PRK02135 | 201 | hypothetical protein; Provisional | 87.8 | |
| KOG1148|consensus | 764 | 85.51 | ||
| KOG4426|consensus | 656 | 85.44 | ||
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 84.98 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 84.87 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 84.62 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 84.47 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 84.37 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 84.23 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 84.22 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 84.0 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 83.84 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 83.34 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 82.68 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 82.64 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 82.32 | |
| TIGR01355 | 283 | cyt_deam_dimer cytidine deaminase, homodimeric. Th | 82.32 | |
| COG1901 | 197 | Uncharacterized conserved protein [Function unknow | 81.99 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 81.02 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 81.0 | |
| PF04013 | 199 | Methyltrn_RNA_2: Putative SAM-dependent RNA methyl | 80.65 |
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-204 Score=1979.01 Aligned_cols=867 Identities=45% Similarity=0.825 Sum_probs=813.5
Q ss_pred ccccccc--ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc--
Q psy15223 438 GVWGEIK--ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-- 513 (2492)
Q Consensus 438 ~ly~~~~--~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-- 513 (2492)
.+|++++ .++++|+|+||||||||||.+|||||+|||+||||.||++|+||+|.|+|||||||||||.+|+|++|.
T Consensus 35 ~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k 114 (933)
T COG0060 35 DIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGK 114 (933)
T ss_pred hHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCc
Confidence 5788877 368899999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
+++.++||++||++|.++++.|+++|+|||+++||+++|.|||++|++.++|+|++|++|||||||.|||+|||+|
T Consensus 115 ~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c 194 (933)
T COG0060 115 KDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRC 194 (933)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCC
Q psy15223 590 KSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669 (2492)
Q Consensus 590 ~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~ 669 (2492)
+|||||+||||.++.||||||+|++.+.. ...+.+++||||||||||||+|||||||.+|++|+.++
T Consensus 195 ~TaLAeaEvey~d~~dpSIyV~F~v~~~~-----------~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~-- 261 (933)
T COG0060 195 ETALAEAEVEYGDVKDPSIYVKFPVKDEG-----------LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNG-- 261 (933)
T ss_pred CcchhhhhhcccccCCceEEEEEEeccCC-----------CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECC--
Confidence 99999999999999999999999998641 24579999999999999999999999999999999987
Q ss_pred CceeeeeHHhHHHHHHHcCCcCc-EEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 670 PLLLILAFNLVKSCLKKFGFKGN-IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 670 ~~~~i~a~~~~~~~~~~~~~~~~-~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
+.||+|++++++++++.+.+.+ ++++++|++|+|++|.|||... .+++.+||+.+||||.+.|||+||+|||||+|
T Consensus 262 -~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~--~~~~~~~v~~gd~VT~d~GTG~VHtAPghGee 338 (933)
T COG0060 262 -EKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDF--VYDRAFPVILGDHVTLDDGTGLVHTAPGHGEE 338 (933)
T ss_pred -EEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccc--cccceeeEEecCeEecCCCccceecCCCCCHH
Confidence 8999999999999999998854 4599999999999999999832 33689999999999999999999999999999
Q ss_pred HHHHHHHcC-CCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeec
Q psy15223 749 DFLIFKKQN-MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 827 (2492)
Q Consensus 749 D~~~~~~~~-l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t 827 (2492)
||.+|+++| + ++++|||++|+|++++|.|.|+.|.+||+.|++.|+++|.|++.++|+||||||||||+|||||+|
T Consensus 339 Dy~vg~~~g~l---~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt 415 (933)
T COG0060 339 DYEVGKKYGLL---EVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRAT 415 (933)
T ss_pred HHHHHHHcCCc---CCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeec
Confidence 999999999 8 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHH
Q psy15223 828 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 907 (2492)
Q Consensus 828 ~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~ 907 (2492)
+|||++|++ +|+++++++++|+|+|+|+++||.+||++|+||||||||+||||||+|+|++||++++.+.++
T Consensus 416 ~QWFi~v~~--------~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El 487 (933)
T COG0060 416 PQWFVSVDK--------LRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEEL 487 (933)
T ss_pred chheeEHHH--------HHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHH
Confidence 999999998 999999999999999999999999999999999999999999999999999999998668999
Q ss_pred HHHHHHHHhhcCCccccccCchhhcCC---CccCceecCCccccccccccccchhcccCccccCCcCe---eeeeccccc
Q psy15223 908 IELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA---DLYLEGSDQ 981 (2492)
Q Consensus 908 i~~~~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~---Dl~~~G~D~ 981 (2492)
.+++++.+++.|++.||+..+.++++. ++..|+|++||||||||||++|.+++..++ +.++|+ |+|+||+||
T Consensus 488 ~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~--~~~~~~~~aD~~lEGsDQ 565 (933)
T COG0060 488 EELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRE--NLKFPALFADFYLEGSDQ 565 (933)
T ss_pred HHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcc--cccCccccCcEEEEeccc
Confidence 999999999999999999999999873 466999999999999999999999998444 355666 999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHH
Q psy15223 982 HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 1061 (2492)
Q Consensus 982 ~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l 1061 (2492)
+||||+|++++++++++.+||++|++|||++|++|+|||||+||+|+|.+++++||||+||||++++++..|++||++++
T Consensus 566 ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il 645 (933)
T COG0060 566 TRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEIL 645 (933)
T ss_pred cchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q psy15223 1062 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141 (2492)
Q Consensus 1062 ~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~ 1141 (2492)
+++.+.|++|||++||+++|+++|+|..+.+...++..+|||||+++++++++++++|++|+|+++++.|++||+.+||+
T Consensus 646 ~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~ 725 (933)
T COG0060 646 KQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSN 725 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999877677778999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCC-
Q psy15223 1142 FYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYN- 1220 (2492)
Q Consensus 1142 ~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~- 1220 (2492)
|||+++|||+|++..++.+|++||++|+++|..++++||||+||+|||+|++|+.. ..++|||+++||+......
T Consensus 726 ~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~----~~~eSVhl~~~p~~~~~~~~ 801 (933)
T COG0060 726 WYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE----RKEESVHLEDWPEVDEELID 801 (933)
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC----CCCceeEeccCCcccccccc
Confidence 99999999999998999999999999999999999999999999999999999875 2268999999999766554
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccceEEeecCCC----
Q psy15223 1221 -SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNL---- 1295 (2492)
Q Consensus 1221 -~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~---- 1295 (2492)
+..+..+|+..+++|..|+++++.+|.++.|++++++++++..+. ...+..+..+|..+|++|.+++....+.
T Consensus 802 ~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~~~~--~~~~~~~~~~l~~~~~~s~~~v~~~~~~~~~~ 879 (933)
T COG0060 802 VEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTED--SELLYKLKPNLGKVLITSAVEVAKALEALAGA 879 (933)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcceeEEEEeecc--hhhhhhhchhHHHHHhhhHHHHHhhhccccch
Confidence 556788999999999999999999999999999999999998765 4455566667999999997766543111
Q ss_pred -----Cc---eEEEEEecCCCCCccccccccccCCCCCCCCcchhhhhhccC
Q psy15223 1296 -----SE---ECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFE 1339 (2492)
Q Consensus 1296 -----~~---~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~~ 1339 (2492)
.. +.+.++++.+.||+|||+|..+++.+..++.||.||+.++++
T Consensus 880 ~~~~~~~~~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~ 931 (933)
T COG0060 880 EAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRIQE 931 (933)
T ss_pred hhhhhhcccceeEEEEeccCCcCCeEEEEcCcCCcccccchHHHHHHHHHhh
Confidence 11 788899999999999999999999999999999999998764
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-196 Score=1904.14 Aligned_cols=890 Identities=45% Similarity=0.819 Sum_probs=835.0
Q ss_pred hhhccccCCCCchhHHHhhhcccchhcc-cccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccc
Q psy15223 1566 AILNGELSKREPGWIKKWQEKKIYHQIR-KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVP 1644 (2492)
Q Consensus 1566 ~~~~a~l~~~E~~~~~~W~~~~~~~~~~-~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~ 1644 (2492)
-+|+++++++|++++++|+++++|++.+ +.++++++|++|||||||||.+|+|||+|+|+||||.||++|+||+|.|+|
T Consensus 14 fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~p 93 (933)
T COG0060 14 FPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVP 93 (933)
T ss_pred CCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCC
Confidence 3789999999999999999999999988 477899999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHH
Q psy15223 1645 GYDCHGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFG 1718 (2492)
Q Consensus 1645 G~D~hGlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~ 1718 (2492)
||||||||||.+++|++|. +++.++|+++|+++|.++++.|+++|+|||+++||+++|.|||++|++.++|+|+
T Consensus 94 GWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~ 173 (933)
T COG0060 94 GWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFK 173 (933)
T ss_pred CCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHH
Confidence 9999999999999999983 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcc
Q psy15223 1719 IIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798 (2492)
Q Consensus 1719 ~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~ 1798 (2492)
+|++|||||||.|||+|||+|+|+|||+||||.++.|||+||+|++.+.. .+.+.+++||||||||||+
T Consensus 174 ~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~-----------~~~~~~lviWTTTPWTLPa 242 (933)
T COG0060 174 ELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEG-----------LDENAYLVIWTTTPWTLPA 242 (933)
T ss_pred HHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCC-----------CCCCcEEEEEeCCCCCchh
Confidence 99999999999999999999999999999999999999999999997641 1357899999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEec
Q psy15223 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 1877 (2492)
Q Consensus 1799 ~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~ 1877 (2492)
|.||||||+.+|++++..+ +.+|+|++++++++++++.+.+++ .+++|++|+|++|.|||... .+++..||+.+
T Consensus 243 N~aiav~pd~~Y~lv~~~~---~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~--~~~~~~~v~~g 317 (933)
T COG0060 243 NLAIAVHPDLDYVLVEVNG---EKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDF--VYDRAFPVILG 317 (933)
T ss_pred cceeEeCCCcceEEEEECC---EEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccc--cccceeeEEec
Confidence 9999999999999999875 889999999999999999876555 99999999999999999843 33689999999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHcC-CCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceee
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQN-MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~-l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~ 1956 (2492)
|||+.+.|||+||+|||||.+||.+|+++| + ++.||||++|+|+++++.|.|+.|++|++.|++.|+++|.|++.+
T Consensus 318 d~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l---~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e 394 (933)
T COG0060 318 DHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLL---EVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSE 394 (933)
T ss_pred CeEecCCCccceecCCCCCHHHHHHHHHcCCc---CCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeee
Confidence 999999999999999999999999999999 8 999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCC
Q psy15223 1957 MFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWG 2036 (2492)
Q Consensus 1957 ~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG 2036 (2492)
+++||||||||||+|+|||+|+|||+++++ +|+++++.+++|+|+|+++++||.+||++++||||||||+||
T Consensus 395 ~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~--------~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WG 466 (933)
T COG0060 395 KIEHSYPHCWRTKTPLIYRATPQWFVSVDK--------LRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWG 466 (933)
T ss_pred eEEeCCCcccCCCCeeEEeecchheeEHHH--------HHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCC
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred ceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC---CccCceecccccccccccCcchhhhccCC
Q psy15223 2037 VPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTLDVWFDSGITHQTVIRGS 2113 (2492)
Q Consensus 2037 ~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvlDvWfdSg~~~~~~~~~~ 2113 (2492)
+|||+|+|++||++.+...++.+++.+.+++.|++.|+...++++++. ++..|+|++||||||||||++|++++..+
T Consensus 467 vPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~ 546 (933)
T COG0060 467 VPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPR 546 (933)
T ss_pred CceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCc
Confidence 999999999999887557899999999999999999999999999873 46699999999999999999999999855
Q ss_pred ccccCCcCc---eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhH
Q psy15223 2114 HKKQLIFPA---DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEI 2190 (2492)
Q Consensus 2114 ~~~~~~~P~---Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~ 2190 (2492)
+ +.++|. |+|+||+||+||||+|+++.++++++++||++|++|||++|++|+|||||+||+|+|.+++++||||+
T Consensus 547 ~--~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADi 624 (933)
T COG0060 547 E--NLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADI 624 (933)
T ss_pred c--cccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchh
Confidence 5 456666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2191 LRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR 2270 (2492)
Q Consensus 2191 lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e 2270 (2492)
||||++++++..|+.||++.++++.+.|++|||++||+++++++|+|..+.....++..+|||||+++++++++++++|+
T Consensus 625 LRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye 704 (933)
T COG0060 625 LRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYE 704 (933)
T ss_pred eeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876666678899999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCcc
Q psy15223 2271 MYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFY 2350 (2492)
Q Consensus 2271 ~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~ 2350 (2492)
+|+|+++++.|++|++.+||+|||+++|+|+|++..++.+|+++|++|+++|.+++++||||+||+|||+|+.|++.
T Consensus 705 ~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~--- 781 (933)
T COG0060 705 NYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE--- 781 (933)
T ss_pred hcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC---
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred ccCCCCeeeccCCCCCccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHH
Q psy15223 2351 IESGETIFTQLHYKLPKVYN--SKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEEL 2428 (2492)
Q Consensus 2351 ~~~~~sV~~~~wP~~~~~~~--~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L 2428 (2492)
...+|||+..||+...... +..+...|+.++.+|+.|+++++.+|.++.|+.++++++++..++ ...+..+..+|
T Consensus 782 -~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~~~~--~~~~~~~~~~l 858 (933)
T COG0060 782 -RKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTED--SELLYKLKPNL 858 (933)
T ss_pred -CCCceeEeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcceeEEEEeecc--hhhhhhhchhH
Confidence 2368999999999877665 456788899999999999999999999999999999999998865 44455666778
Q ss_pred HHhhhcccEEEeecCCC---------Cc---eEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhcc
Q psy15223 2429 KFFLLTSSVSLFQIKNL---------SE---ECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFAE 2490 (2492)
Q Consensus 2429 ~~l~~vs~v~i~~~~~~---------~~---~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~~ 2490 (2492)
..++++|.+++....+. .. +.+.++++.+.||+|||++..+++.+..++.+|.||..++++.
T Consensus 859 ~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~~ 932 (933)
T COG0060 859 GKVLITSAVEVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVRRIQEM 932 (933)
T ss_pred HHHHhhhHHHHHhhhccccchhhhhhhcccceeEEEEeccCCcCCeEEEEcCcCCcccccchHHHHHHHHHhhc
Confidence 88898887765553111 12 7888999999999999999999998889999999999998753
|
|
| >KOG0433|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-184 Score=1658.95 Aligned_cols=852 Identities=35% Similarity=0.599 Sum_probs=772.6
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHH-HHHHHHhCc---CCCHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIE-IQIEKLYGK---NLSPIEI 520 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE-~~a~k~~~~---~~~~~e~ 520 (2492)
.+++++.|++|| |||+||||||+|+|+||||.||+.++|++|+|+||||||||||| .+|.+.+.. +++|.|+
T Consensus 54 s~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~lei 129 (937)
T KOG0433|consen 54 SDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEI 129 (937)
T ss_pred hhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHH
Confidence 667788999999 99999999999999999999999999999999999999999999 688887654 6799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
|++++.+|.+.|++|++.|+||||++||+++|.||||+|+..++++|.+||+||||||+.|||||||+++|||||+|+||
T Consensus 130 R~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEY 209 (937)
T KOG0433|consen 130 RAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEY 209 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC-CCceeeeeHH
Q psy15223 601 K-KKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND-PPLLLILAFN 678 (2492)
Q Consensus 601 ~-~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~-~~~~~i~a~~ 678 (2492)
+ +|.|+|+|++||+...... .... ......+|++||||||||||+|.||||||+..|++|+.++. ..++|+||.+
T Consensus 210 n~nH~S~S~Y~~F~L~~~S~~--~~~~-~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~ 286 (937)
T KOG0433|consen 210 NDNHQSTSAYFRFKLINFSSS--AHSE-DSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASK 286 (937)
T ss_pred CcCCcceeEEEEEeccCCccc--cccC-CCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccc
Confidence 8 5999999999999865421 1111 11234599999999999999999999999999999998732 2478999999
Q ss_pred hHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCC
Q psy15223 679 LVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 758 (2492)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l 758 (2492)
+++++....+.+...+++++|.+|+|.+|.||+.+ ++..|++.++|||.+.|||+||+|||||+|||.++.++||
T Consensus 287 L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~-----~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l 361 (937)
T KOG0433|consen 287 LLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHN-----ELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGL 361 (937)
T ss_pred hhhhhhhhcCcceeeeeecchhhccCceecCcCcc-----ccCCccccccceecCcccceeecCCCCChHHHHHHhhcCC
Confidence 99999888877777779999999999999999974 7789999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCcccccCC-CCCCcchh-hchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCC
Q psy15223 759 KDSDIINPVMDDGNFISTLP-LFGGMSIW-KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 836 (2492)
Q Consensus 759 ~~~~~~~~vd~~G~~~~~~~-~~~G~~v~-~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~ 836 (2492)
++.+|||++|+||.+++ .+.|+.|. |+++.|+..|. ..+++.++|.||||++||||+|||+|+|+||||++++
T Consensus 362 ---~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~ 436 (937)
T KOG0433|consen 362 ---RVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEE 436 (937)
T ss_pred ---CcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHh
Confidence 77799999999999996 89999998 78999999999 6899999999999999999999999999999999998
Q ss_pred CCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHh
Q psy15223 837 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916 (2492)
Q Consensus 837 ~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~ 916 (2492)
+|..++++|++|+|+|..+.+||..|+..|++|||||||.||+|||+||++++|++. ++.+++.|+...++
T Consensus 437 --------~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l-~ns~~~~h~~~~~e 507 (937)
T KOG0433|consen 437 --------IKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYL-SNSLIEWHAKLTRE 507 (937)
T ss_pred --------hhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCcee-ehHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 89999999999999
Q ss_pred hcCCccccccCchhhcCC--------CccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHH
Q psy15223 917 LNGIEIWQNLDIKEFLGD--------DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS 988 (2492)
Q Consensus 917 ~~g~~~w~~~~~~~~~~~--------~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s 988 (2492)
++|+|.||..++++++|. ...+|.|++||||||||||++|.++++.. ...++|+|+||+||+||||||
T Consensus 508 qeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~----~~~~aDv~LEG~DQ~rGWFQS 583 (937)
T KOG0433|consen 508 QEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNE----REHVADVYLEGVDQFRGWFQS 583 (937)
T ss_pred HhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCCC----CCcceeeEEecchhcchHHHH
Confidence 999999999999999873 25679999999999999999999998742 457899999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh------cChhhHHHHhhccCcccccccCHHHHH
Q psy15223 989 SLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL------FGAEILRLWVASTDYSKDLSISNEILN 1062 (2492)
Q Consensus 989 ~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~------yGaD~lRl~l~s~~~~~d~~fs~~~l~ 1062 (2492)
+|++++|..+++||++|++|||++|++|.|||||+||||+|+.+++. ||+|+||||++++++..|+.+++.+|+
T Consensus 584 sLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~ 663 (937)
T KOG0433|consen 584 SLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILD 663 (937)
T ss_pred HHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q psy15223 1063 RVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142 (2492)
Q Consensus 1063 ~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~ 1142 (2492)
++.+.+.|+||++||+++|+.+|++..+.++..++..+|+++|.+|+++++++++.|++|+|+++++.|..|++++||++
T Consensus 664 qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~ 743 (937)
T KOG0433|consen 664 QVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAF 743 (937)
T ss_pred HHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCch
Q psy15223 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSK 1222 (2492)
Q Consensus 1143 Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~ 1222 (2492)
||+++||||||+..++..||++|++|++++..+++.++||+||++||+||+|+.. .++ +|...||.+...+...
T Consensus 744 YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~-----~~~-~f~~k~~~l~s~~~~~ 817 (937)
T KOG0433|consen 744 YFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS-----HEK-IFRLKWEDLHSGLLTP 817 (937)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC-----CCc-ccccCccccchhhcCc
Confidence 9999999999999999999999999999999999999999999999999999953 223 8999999987766544
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeC----chhHHHHHHhHHHHHHhhhccceEEeecCCCC
Q psy15223 1223 KL--LYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN----KLDFEILNEFGEELKFFLLTSSVSLFQIKNLS 1296 (2492)
Q Consensus 1223 ~~--~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~----~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~ 1296 (2492)
.. ...|..+++++....+.++.++..+.+++++++.+.++.. .++.++++.++.++.++.+.+.|++.+....-
T Consensus 818 ~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~vE~~~~~ 897 (937)
T KOG0433|consen 818 HDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTIRIYESELPELLNVSQVILHENRDENSVELVESRLRY 897 (937)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeecccccchhHHHHHHHHhhhhhhhhhcccchHHHHhhhHH
Confidence 33 2358889999999999999999999999999998888764 23344444444455555544444443322111
Q ss_pred ceEEEEEecCCCCCccccccccccCCCCCCCCcchhhhhhcc
Q psy15223 1297 EECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 1338 (2492)
Q Consensus 1297 ~~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~ 1338 (2492)
+.......+.+.||+|||+++.. .+.||.||..++.
T Consensus 898 ~~~~~~~ra~~~~c~rcw~~~~~------~~~lc~rc~~~~~ 933 (937)
T KOG0433|consen 898 CERCRKHRATFSRCVRCWDLRKQ------DPPLCLRCQDLRF 933 (937)
T ss_pred HHHHHHHHhcccccHHHHhhhcc------CCcccchHHHHHh
Confidence 23344568999999999999873 3459999998864
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-180 Score=1849.51 Aligned_cols=885 Identities=40% Similarity=0.717 Sum_probs=797.5
Q ss_pred cccccccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc----
Q psy15223 438 GVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---- 513 (2492)
Q Consensus 438 ~ly~~~~~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---- 513 (2492)
.+|++..+...+++|+||+|||||||.||||||+|++++||++||+||+||+|+|+|||||||||||++++|.++.
T Consensus 20 ~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~ 99 (974)
T PLN02843 20 QVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARK 99 (974)
T ss_pred CCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhc
Confidence 4565544323356799999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 514 NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 514 ~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++++|+++|++|+.++++.|+++|+|||+++||+++|+||||.|++.++++|.+|+++|||||+.|||+|||+|+|||
T Consensus 100 ~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Tal 179 (974)
T PLN02843 100 ELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTAL 179 (974)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-eeccEEEEEeecCCchh-hhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC---
Q psy15223 594 AEAEIEYKK-KYDFSIYVGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND--- 668 (2492)
Q Consensus 594 ae~Evey~~-~~~~s~yv~f~~~~~~~-~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~--- 668 (2492)
||+||+|++ +.++++||+|++.+... +.. .... ...+.+++||||||||||||+||||||+++|++|+.+++
T Consensus 180 ae~Evey~e~~~~~s~yv~f~~~~~~~~~~~--~~~~-~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d 256 (974)
T PLN02843 180 AEAELEYPEGHVSKSIYVAFPVVSPSETSPE--ELEE-FLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSED 256 (974)
T ss_pred hHhHhcccCCccCceEEEEEEecCCcccccc--cccc-ccccceEEEEeCcchhhccCcEEEECCCCceEEEEecccccc
Confidence 999999996 78999999999976321 100 0000 001369999999999999999999999999999997521
Q ss_pred -------------------CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEe-cC
Q psy15223 669 -------------------PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL-GD 728 (2492)
Q Consensus 669 -------------------~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~-~~ 728 (2492)
.++.||||+++++++.++++.+..++++++|++|+|++|.|||+ ++++||+. ++
T Consensus 257 ~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~------~~~~pii~~~~ 330 (974)
T PLN02843 257 ESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLY------NRESPVVIGGD 330 (974)
T ss_pred ccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCC------CCceeEEecCC
Confidence 13689999999999999988765556999999999999999998 78899974 89
Q ss_pred CcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchh-hchHHHHHHHHhcCCeeeeee
Q psy15223 729 YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW-KASKLICSYLKKSKTLFNIEM 807 (2492)
Q Consensus 729 ~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~-~a~~~i~~~L~~~g~l~~~~~ 807 (2492)
||++++|||+||+|||||++||++|++||| ++++|||++|+|++++|+|+|+.|+ +||+.|++.|+++|.|++.+.
T Consensus 331 ~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l---~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~ 407 (974)
T PLN02843 331 YITTESGTGLVHTAPGHGQEDYITGLKYGL---PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEA 407 (974)
T ss_pred ccCCCCCCCeEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeee
Confidence 999999999999999999999999999999 8889999999999999999999998 899999999999999999999
Q ss_pred eccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCc
Q psy15223 808 FEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGV 887 (2492)
Q Consensus 808 ~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGv 887 (2492)
++|+||||||||+|||+|+|+||||++++ +|+++++++++|+|+|+++++|+.+||++|+||||||||+|||
T Consensus 408 ~~H~yp~cwR~~~pvi~r~t~QWFi~~~~--------~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~ 479 (974)
T PLN02843 408 YGHKYPYDWRTKKPTIFRATEQWFASVEG--------FRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGV 479 (974)
T ss_pred ecCCCCccCCCCCeEEEEecCceeEeCHH--------HHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeecccccc
Confidence 99999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred eeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC----CccCceecCCccccccccccccchhcccC
Q psy15223 888 PIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD----DAVNYKKSNDTLDVWFDSGITHQTVIRGS 963 (2492)
Q Consensus 888 pIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~----~~~~~~~~~dvlDvWfdSg~~~~~~~~~~ 963 (2492)
|||+|||++||+++ .+.+++++++++++..|++.||..++++++++ +...|.|++||||||||||++|..+++.+
T Consensus 480 pIP~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~ 558 (974)
T PLN02843 480 PIPVFYHVETKEPL-MNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSR 558 (974)
T ss_pred EEEEEEEcCCCCEe-echhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhccc
Confidence 99999999999887 67899999999999999999999988888874 24569999999999999999998887654
Q ss_pred ccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh---------
Q psy15223 964 HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN--------- 1034 (2492)
Q Consensus 964 ~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~--------- 1034 (2492)
. +.+||+|+|++|+||+|||||++++++.++.+.+||++|++|||++|.+|+|||||+||+|+|.++|+
T Consensus 559 ~--~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~ 636 (974)
T PLN02843 559 E--GLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEP 636 (974)
T ss_pred c--ccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccccccc
Confidence 3 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHH
Q psy15223 1035 LFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKE 1114 (2492)
Q Consensus 1035 ~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 1114 (2492)
+||+|+||||++++++++|++|+.+.++++.+.+++|||++||+++|+.+|++ ...++..++..+|+|+++++++++++
T Consensus 637 ~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~-~~~~~~~~~~~~D~wiLskL~~li~~ 715 (974)
T PLN02843 637 AYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKP-DNAVPYEDLPSIDKYALFQLENVVNE 715 (974)
T ss_pred ccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCc-ccccCccccCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999876 22334445678899999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1115 ILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1115 v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
+.++|++|+|++|++.+++|++.++||+||+.+|||+|++..++..|++++++|+.+++.++++|+|||||+|||||++|
T Consensus 716 v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L 795 (974)
T PLN02843 716 IEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNL 795 (974)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987777888999999999999999999999999999999999
Q ss_pred cCCCccccCCCceeeccCCCCcccCCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCc-hhHHHH
Q psy15223 1195 SDKNFYIESGETIFTQLHYKLPKVYNS--KKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK-LDFEIL 1271 (2492)
Q Consensus 1195 ~~~~~~~~~~~SV~~~~wp~~~~~~~~--~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~-~~~~~l 1271 (2492)
+... .....+|||++.||+.++.+.+ ..+.+.|+.++++|.+|++++|.+|+++.|++++++.|+|..+. +..+.+
T Consensus 796 ~~~~-~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~~~~~~~v~l~~~~~~~~~~l 874 (974)
T PLN02843 796 PFQE-DGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARL 874 (974)
T ss_pred cccc-cCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeEEEEeCCHHHHHHH
Confidence 7420 0012469999999997765443 44566799999999999999999999999999999999997643 355667
Q ss_pred HHh------HHHHHHhhhccceEEeecCC----------------CCceEEEEEecCCCCCccccccccccCCCCCCCCc
Q psy15223 1272 NEF------GEELKFFLLTSSVSLFQIKN----------------LSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDL 1329 (2492)
Q Consensus 1272 ~~~------~~~L~~l~~vs~v~i~~~~~----------------~~~~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~L 1329 (2492)
+.+ .++|+++|+||+|++...+. ..+++|.|.++.++||||||+|.+++|.++++++|
T Consensus 875 ~~~~~~~~~~~~l~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~kC~RCW~~~~~~~~~~~~~~l 954 (974)
T PLN02843 875 AELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEYVEGAGRVWVGVSRADGSKCERCWNYSPAVGSFSDHPTL 954 (974)
T ss_pred HhhccccchHHHHHHHhccCceEeecCCCccccccchhccccccccCceEEEEEeCCCCCCCCCCCEeCCcCCCCCCCCc
Confidence 663 37899999999999963211 02478899999999999999999999998889999
Q ss_pred chhhhhhccCCccchhHH
Q psy15223 1330 CNRCFNNLFEPCAMCAGA 1347 (2492)
Q Consensus 1330 C~RC~~~v~~~c~mC~~a 1347 (2492)
|.||..++..+-|--++|
T Consensus 955 C~rc~~~~~~~~~~~~~~ 972 (974)
T PLN02843 955 CERCYPVVIAQPPPLAAA 972 (974)
T ss_pred ChhhHHHHcCCCCccccc
Confidence 999999998666555444
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-180 Score=1844.97 Aligned_cols=871 Identities=42% Similarity=0.700 Sum_probs=793.0
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh---Cc
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY---GK 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~---~~ 513 (2492)
.+|++.. .+.++++|+||||||||||.||||||+|+|+|||++||+||+||+|+|+|||||||||||.+|+|.+ |+
T Consensus 41 ~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~ 120 (961)
T PRK13804 41 DLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGK 120 (961)
T ss_pred CCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCC
Confidence 4566554 4567899999999999999999999999999999999999999999999999999999999999987 33
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCC
Q psy15223 514 ---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCK 590 (2492)
Q Consensus 514 ---~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~ 590 (2492)
++++++|+++|++||.++++.|++||+|||+++||+|+|.||||.|+++++|+|.+|+++|||||+.+||+|||.|+
T Consensus 121 ~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~ 200 (961)
T PRK13804 121 NKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVER 200 (961)
T ss_pred ChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC--
Q psy15223 591 SALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND-- 668 (2492)
Q Consensus 591 taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~-- 668 (2492)
|||||+||||+++.|+++||+|++.+...+ ...+.+++||||||||||||+||||||+++|++++.++.
T Consensus 201 TaLa~~Evey~~~~s~~~~v~F~~~~~~~~---------~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~ 271 (961)
T PRK13804 201 TALAEAEIEYHDIESDTIWVKFPVKDGKGI---------LDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAEN 271 (961)
T ss_pred CCccchhcccccccCceEEEEEEecCcccc---------cCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccc
Confidence 999999999999999999999999653211 013469999999999999999999999999999997531
Q ss_pred -----CCceeeeeHHhHHHHHHHcCCcCcE-EEEEecccccCCEEecCCcccccCCCc-----eecEEecCCcccCCCCc
Q psy15223 669 -----PPLLLILAFNLVKSCLKKFGFKGNI-IGICKGIKLSKINFFHPLSNIDINYNR-----LSPIYLGDYITVDSGTG 737 (2492)
Q Consensus 669 -----~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~~~-----~~pii~~~~V~~~~GTG 737 (2492)
.++.||||+++++++.++.+.+.+. +.+++|++|.|++|.|||+ ++ .+|||+++||++++|||
T Consensus 272 ~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~------~~~~~~~~~pvi~~~~V~~~~GTG 345 (961)
T PRK13804 272 DFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD------GLDGYEFEVPVLDGDHVTDDAGTG 345 (961)
T ss_pred cccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC------CcccccceeEEEecCccCCCCCCc
Confidence 1268999999999999998876654 4999999999999999998 66 89999999999999999
Q ss_pred cEEecCCCCHHHHHHHHHcCC-CCCCcccccCCCCcccccCCC--------CCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 738 IVHSAPAYGIEDFLIFKKQNM-KDSDIINPVMDDGNFISTLPL--------FGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 738 ~Vh~aPahg~~D~~~~~~~~l-~~~~~~~~vd~~G~~~~~~~~--------~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
+||+|||||++||++|++||| +. ++|||++|+|++++|. |.|+.+++||+.|++.|++.|.|++.++|
T Consensus 346 ~Vh~aPahg~~Dy~~~~~~~l~~~---~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~ 422 (961)
T PRK13804 346 FVHTAPGHGREDFNVWMKYGRTEI---PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRL 422 (961)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcc---cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccce
Confidence 999999999999999999999 54 4899999999999887 89999999999999999999999999999
Q ss_pred ccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCce
Q psy15223 809 EHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 888 (2492)
Q Consensus 809 ~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvp 888 (2492)
.|+||||||||+|||+|+++||||++++.. .++.++|+++++++++|+|+|+++++|+.+||++|+||||||||+||||
T Consensus 423 ~h~yp~~wR~~~pii~r~t~QWFi~~~~~~-~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~P 501 (961)
T PRK13804 423 KHSYPHSWRSKKPVIFRNTPQWFISMDKDL-GDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVP 501 (961)
T ss_pred ecCCCccCCCCCeEEEeccccccEEcCCcc-cchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCce
Confidence 999999999999999999999999998611 1234599999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC---CccCceecCCccccccccccccchhcccCcc
Q psy15223 889 IAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTLDVWFDSGITHQTVIRGSHK 965 (2492)
Q Consensus 889 IP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~ 965 (2492)
||+|||+ +|+++ .+.+++.++.+.++..|+++||+.+..+++++ ++..++|++||||||||||++|..+++.+.
T Consensus 502 IP~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~- 578 (961)
T PRK13804 502 IPIFVAE-DGEIL-MDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRP- 578 (961)
T ss_pred eeEEEcC-CCCEe-ccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccccCCc-
Confidence 9999996 56765 67789999999999999999998887777764 356799999999999999999988776544
Q ss_pred ccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHh
Q psy15223 966 KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 1045 (2492)
Q Consensus 966 ~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l 1045 (2492)
+..||+|+|++|+||+|||||++++++.++.+.+||++|++|||++|.+|+|||||+||+|+|.+++++||||+||||+
T Consensus 579 -~~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~l 657 (961)
T PRK13804 579 -DLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWV 657 (961)
T ss_pred -ccCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchH
Q psy15223 1046 ASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFH 1125 (2492)
Q Consensus 1046 ~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~ 1125 (2492)
+++++++|++||++.++++.+.+++|+|++||+++++.+|++....++...+..+|+|++++++++++++.++|++|+|+
T Consensus 658 ls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~ 737 (961)
T PRK13804 658 ASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFK 737 (961)
T ss_pred HhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99899999999999999999999999999999999999887654333345567889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCC
Q psy15223 1126 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGE 1205 (2492)
Q Consensus 1126 ~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~ 1205 (2492)
+|++.+++|++++||++||+++|+|+|++..++..|++++++|+.+++.++++|+|||||+|||||++|++. ..+
T Consensus 738 ~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~-----~~~ 812 (961)
T PRK13804 738 RIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPE-----EEV 812 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccC-----CCC
Confidence 999999999999999999999999999988888889999999999999999999999999999999999842 236
Q ss_pred ceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCc-hhHHHHHHhHHHHHHhhhc
Q psy15223 1206 TIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK-LDFEILNEFGEELKFFLLT 1284 (2492)
Q Consensus 1206 SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~-~~~~~l~~~~~~L~~l~~v 1284 (2492)
|||++.||+.++.+.++++++.|+.+.++|+.|++++|.+|+++.|++++++.|+|.++. +..+.|..+ +|+++|+|
T Consensus 813 sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v~l~~~~~~~~~~l~~~--~l~~~~~v 890 (961)
T PRK13804 813 SVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAALEGL--DFAEICIT 890 (961)
T ss_pred ceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEEcCCHHHHHHHHHH--HHHHHhhh
Confidence 999999999776666777888899999999999999999999999999999999997644 455666665 59999999
Q ss_pred cceEEeecC--C-------CCceEEEEEecCCCCCccccccccccCCCCCCCCcchhhhhhcc
Q psy15223 1285 SSVSLFQIK--N-------LSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 1338 (2492)
Q Consensus 1285 s~v~i~~~~--~-------~~~~~v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~ 1338 (2492)
|+|++...+ + ..+++|.|.++.++||||||+|.+++|.+.++++||.||..++.
T Consensus 891 s~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~ 953 (961)
T PRK13804 891 SQLTVAAGEAPADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKALR 953 (961)
T ss_pred CceEEecCCCcchhhcccccCceEEEEEeCCCCCCcCCCCCcCCcCCCCCCCCcChhHHHHHH
Confidence 999996321 0 02478999999999999999999999988889999999999986
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-179 Score=1841.60 Aligned_cols=863 Identities=52% Similarity=0.932 Sum_probs=799.9
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|++.. .+.++++|+||+|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|+|++|.
T Consensus 36 ~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~ 115 (912)
T PRK05743 36 DLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGK 115 (912)
T ss_pred CCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccc
Confidence 4565544 456788999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 514 NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 514 ~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++++|+++|++|+.++++.|++||+|||+++||+++|.||||.|+++++++|.+|+++|||||+.+||+|||.|+|||
T Consensus 116 ~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaL 195 (912)
T PRK05743 116 KLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSAL 195 (912)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCcee
Q psy15223 594 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673 (2492)
Q Consensus 594 ae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~ 673 (2492)
||+||+|+++.|+++||+|++.+.. +... ..+.+++||||||||||||+||||||+++|++++.++ +.|
T Consensus 196 ad~Evey~~~~s~~~yv~f~l~~~~-~~~~-------~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~---~~~ 264 (912)
T PRK05743 196 AEAEVEYHDKTSPSIYVAFPVVDGK-LAAA-------FKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEG---EKL 264 (912)
T ss_pred hhhHhhcccccCceEEEEEEecCcc-hhcc-------cCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCC---CEE
Confidence 9999999999999999999996532 1000 0246999999999999999999999999999999865 689
Q ss_pred eeeHHhHHHHHHHcCCcCcEE-EEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHH
Q psy15223 674 ILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI 752 (2492)
Q Consensus 674 i~a~~~~~~~~~~~~~~~~~~-~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~ 752 (2492)
|+|+++++++.++.+++...+ .+++|++|.|++|.|||+ ++++||++++||++++|||+||+|||||++||.+
T Consensus 265 i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~------~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~ 338 (912)
T PRK05743 265 IVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY------DRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVV 338 (912)
T ss_pred EEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC------CCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHH
Confidence 999999999999988876554 999999999999999998 7899999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeeccccee
Q psy15223 753 FKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 832 (2492)
Q Consensus 753 ~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi 832 (2492)
|++||| ++++|||++|+|++++|+|.|+++++|++.|++.|++.|.|++.++++|+||||||||+||++|+++|||+
T Consensus 339 ~~~~~L---~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi 415 (912)
T PRK05743 339 GQKYGL---EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFI 415 (912)
T ss_pred HHHcCC---CcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccE
Confidence 999999 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHH
Q psy15223 833 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912 (2492)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~ 912 (2492)
++++ +++|+++++++++++|+|+++++|+.+||++|+||||||||+||||||+|||++||+++ .+.+++.+++
T Consensus 416 ~~~~------~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~-~~~~~~~~i~ 488 (912)
T PRK05743 416 SMDK------KGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELH-PTPELIEHVA 488 (912)
T ss_pred eCCh------HHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEe-ecHHHHHHHH
Confidence 9996 35999999999999999999999999999999999999999999999999999999887 4778899999
Q ss_pred HHHhhcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHH
Q psy15223 913 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLT 992 (2492)
Q Consensus 913 ~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~ 992 (2492)
++++..|++.|++..+.+++|+++..+.+++||||||||||++|+++++.+. +++||+|+|++|+||+|||||+++++
T Consensus 489 ~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~ 566 (912)
T PRK05743 489 KLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRP--ELGYPADLYLEGSDQHRGWFQSSLLT 566 (912)
T ss_pred HHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCcc--ccCCCceEEEecccccchHHHHHHHH
Confidence 9999999999999998888886567899999999999999999999887543 47899999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHH
Q psy15223 993 SIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 1072 (2492)
Q Consensus 993 ~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~ 1072 (2492)
++++.+.+||++|++|||++|++|+|||||+||+|+|.+++++||||+||||++++++++|++||++.++++.+.+++|+
T Consensus 567 ~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~ 646 (912)
T PRK05743 567 SVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIR 646 (912)
T ss_pred HHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhc
Q psy15223 1073 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 1152 (2492)
Q Consensus 1073 n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~ 1152 (2492)
|++||+++|+.+|++....++...+..+|+|++++++++++++.++|++|+|++|++.+++|++++||++|++++|+|+|
T Consensus 647 N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly 726 (912)
T PRK05743 647 NTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLY 726 (912)
T ss_pred HHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhh
Confidence 99999999998887643333344567899999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHH
Q psy15223 1153 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILK 1232 (2492)
Q Consensus 1153 ~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~ 1232 (2492)
+...++..|++++++|+.++..++++|+|||||+|||+|++|+.. ..+|||++.||+.++.+.+..+++.|+.++
T Consensus 727 ~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~-----~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~ 801 (912)
T PRK05743 727 TDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE-----REESVFLEEWPEVPELADDEELLAKWEELL 801 (912)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC-----CCCceEEecCCCCccccCCHHHHHHHHHHH
Confidence 987777788999999999999999999999999999999999631 247999999999777666777888999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccceEEeecCC-------CCceEEEEEec
Q psy15223 1233 KIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKN-------LSEECIIIKPS 1305 (2492)
Q Consensus 1233 ~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~-------~~~~~v~v~~~ 1305 (2492)
++|++|++++|.+|+++.|++++++.|+|..++ +.|..+.++|+++|+||+|++....+ .++++|.|.++
T Consensus 802 ~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~vs~v~~~~~~~~~~~~~~~~~~~v~v~~~ 878 (912)
T PRK05743 802 EVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALLESLGDELRFLLIVSQVEVADGPAAAAAAEEVEGLAVKVEKA 878 (912)
T ss_pred HHHHHHHHHHHHhhhccCCCcccceEEEEEcCH---HHHHHHHHHHHHHhhhCceEEecCccccccccccCceEEEEEeC
Confidence 999999999999999999999999999987654 66777778999999999999964211 13578999999
Q ss_pred CCCCCccccccccccCCCCCCCCcchhhhhhc
Q psy15223 1306 IYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 1337 (2492)
Q Consensus 1306 ~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v 1337 (2492)
.++||||||+|..++|.++.+++||.||..++
T Consensus 879 ~~~kC~RCW~~~~~~~~~~~~~~~C~rC~~~~ 910 (912)
T PRK05743 879 EGEKCERCWHYREDVGSDAEHPTLCGRCVSNV 910 (912)
T ss_pred CCCCCCCcCCEeCCcCCCCCCCCcChhHHHHh
Confidence 99999999999999988888899999999987
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-179 Score=1834.98 Aligned_cols=885 Identities=52% Similarity=0.938 Sum_probs=819.7
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.+.++++|+||+|||||||.||||||+|++++||++||+||+||+|+|+|||
T Consensus 16 ~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~ 95 (912)
T PRK05743 16 PMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGW 95 (912)
T ss_pred CCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCc
Confidence 47899999999999999999999876555567889999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1647 DCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
||||||||.+|+|++|. ++++++|+++|++|+.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+++
T Consensus 96 D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~ 175 (912)
T PRK05743 96 DCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKK 175 (912)
T ss_pred CCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHC
Confidence 99999999999998753 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~ 1803 (2492)
|||||+.+||+|||.|+|+|||+||+|+++.++++||+|++.+.. +...+ .+.+++||||||||||||+|||
T Consensus 176 Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~-~~~~~-------~~~~l~i~TTrP~Tl~~n~aia 247 (912)
T PRK05743 176 GYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGK-LAAAF-------KDASLVIWTTTPWTLPANQAIA 247 (912)
T ss_pred CCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcc-hhccc-------CCCEEEEEeCCChhhhhCeEEE
Confidence 999999999999999999999999999999999999999986532 11000 2469999999999999999999
Q ss_pred EcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1804 VHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1804 v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
|||+++|++++.++ +.||+|+++++++.+..+.+...+ .+++|++|+|++|.||++ ++++||++++||++
T Consensus 248 v~p~~~Y~~~~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~------~~~~pvi~~~~V~~ 318 (912)
T PRK05743 248 VHPEFDYVLVEVEG---EKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY------DRDSPVILGDHVTL 318 (912)
T ss_pred ECCCCeeEEEEcCC---CEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC------CCeeeEeCCCccCC
Confidence 99999999999864 579999999999999888766655 999999999999999998 88999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||+|||||++||+++++||| ++++++|++|+|+++.|+|.|+++++|+++|++.|+++|.|++.++++|+|
T Consensus 319 ~~GTG~Vh~aPahg~~Dy~~~~~~~L---~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 395 (912)
T PRK05743 319 DAGTGLVHTAPGHGEDDYVVGQKYGL---EVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSY 395 (912)
T ss_pred CCCcCeEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccC
Confidence 99999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEE
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFF 2042 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~ 2042 (2492)
|||||||+||++|+++|||+++++ +.+|+++++++++|+|+|+++++++.+||++++||||||||+||||||+|
T Consensus 396 p~~wR~~~pvi~r~~~QWFi~~~~------~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~ 469 (912)
T PRK05743 396 PHCWRTKKPVIFRATPQWFISMDK------KGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIF 469 (912)
T ss_pred CeecCCCCEEEEEecCcccEeCCh------HHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEE
Confidence 999999999999999999999997 44999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCccccCCcCc
Q psy15223 2043 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA 2122 (2492)
Q Consensus 2043 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~P~ 2122 (2492)
+|++||.+.+ +.+++.++++.++..|++.|++..+.+++|+++..+.|++||||||||||++|++++..+. +.+||+
T Consensus 470 ~~~~~g~~~~-~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~--~~~~P~ 546 (912)
T PRK05743 470 YHKETGELHP-TPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQRP--ELGYPA 546 (912)
T ss_pred EECCCCcEee-cHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCcc--ccCCCc
Confidence 9999998754 6678889999999999999999998888886567899999999999999999999887544 478999
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCCC
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSK 2202 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~~ 2202 (2492)
|+|++|+||+|||||+++++++++.+.+||++|++|||++|.+|+|||||+||||+|.+++++||||+||||++++++++
T Consensus 547 Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~ 626 (912)
T PRK05743 547 DLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSG 626 (912)
T ss_pred eEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy15223 2203 DLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282 (2492)
Q Consensus 2203 d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~ 2282 (2492)
|++|+++.++++.+.+++|+|++||+++++.+|.+....++...+..+|+|+++++++++++++++|++|+|++|++.++
T Consensus 627 D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~ 706 (912)
T PRK05743 627 DVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLH 706 (912)
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999888765333233345678899999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccC
Q psy15223 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 2362 (2492)
Q Consensus 2283 ~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~w 2362 (2492)
+|++++||++||+.+|+|+|+...++..|++++++|+.+++.++++|+|||||+|||+|+.|+.. ..+||+++.|
T Consensus 707 ~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~-----~~~sv~~~~w 781 (912)
T PRK05743 707 NFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE-----REESVFLEEW 781 (912)
T ss_pred HHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC-----CCCceEEecC
Confidence 99999999999999999999987666778899999999999999999999999999999999632 2469999999
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhhcccEEEeec
Q psy15223 2363 YKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQI 2442 (2492)
Q Consensus 2363 P~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~ 2442 (2492)
|+.++.+.++.+++.|+.++++|+.|++++|.+|+++.|++++++.++|..++ +.+..+.++|+.+++||+|++...
T Consensus 782 P~~~~~~~~~~~~~~~~~~~~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~vs~v~~~~~ 858 (912)
T PRK05743 782 PEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALLESLGDELRFLLIVSQVEVADG 858 (912)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceEEEEEcCH---HHHHHHHHHHHHHhhhCceEEecC
Confidence 99888777888889999999999999999999999999999999999987654 667777789999999999999643
Q ss_pred C-------CCCceEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhh
Q psy15223 2443 K-------NLSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 2488 (2492)
Q Consensus 2443 ~-------~~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~ 2488 (2492)
. +.++++|.|.++.++||||||+|+.+++.++.+++||+||.+||.
T Consensus 859 ~~~~~~~~~~~~~~v~v~~~~~~kC~RCW~~~~~~~~~~~~~~~C~rC~~~~~ 911 (912)
T PRK05743 859 PAAAAAAEEVEGLAVKVEKAEGEKCERCWHYREDVGSDAEHPTLCGRCVSNVE 911 (912)
T ss_pred ccccccccccCceEEEEEeCCCCCCCCcCCEeCCcCCCCCCCCcChhHHHHhc
Confidence 1 113688999999999999999999988877788899999999983
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-178 Score=1831.04 Aligned_cols=894 Identities=41% Similarity=0.699 Sum_probs=812.2
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.+.++++|+||+|||||||.||||||+|+|++||++||+||+||+|+|+|||
T Consensus 21 ~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGw 100 (961)
T PRK13804 21 PMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGW 100 (961)
T ss_pred CCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Confidence 57899999999999999999999986655668899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1647 DCHGMPIEIQIEKLY---GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~---~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
||||||||.+++|.+ |+ ++++++|++.|++|+.++++.|++||+|||+++||+++|.||||.|+++++|+|.+|
T Consensus 101 D~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l 180 (961)
T PRK13804 101 DCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKF 180 (961)
T ss_pred CCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999999987 33 578999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcccc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQ 1800 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ 1800 (2492)
+++|||||+.+||+|||.|+|+|||+||||+++.++++||+|++.+...+ + .++.+++||||||||||||+
T Consensus 181 ~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~---~------~~~~~lviwTTtPwTl~an~ 251 (961)
T PRK13804 181 AAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGI---L------DSGTYVVIWTTTPWTIPANR 251 (961)
T ss_pred HHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccc---c------CCCCeEEEEeCCchhhhhCe
Confidence 99999999999999999999999999999999999999999998653211 0 12469999999999999999
Q ss_pred EEEEcCCCCEEEEEecCCC-------CceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCc--
Q psy15223 1801 ALHVHPEFDYALVHIKNDP-------PLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNR-- 1870 (2492)
Q Consensus 1801 ai~v~p~~~Y~~~~~~~~~-------~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~-- 1870 (2492)
||||||+++|++++.++.. ++.+|+|+++++++.+..+.+.+.+ .+++|++|+|++|.|||+ ++
T Consensus 252 aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~------~~~~ 325 (961)
T PRK13804 252 AISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD------GLDG 325 (961)
T ss_pred EEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC------Cccc
Confidence 9999999999999975310 2579999999999998887766655 999999999999999998 66
Q ss_pred ---eecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCC--------CCCccHHhhh
Q psy15223 1871 ---LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL--------FGGMSIWKAS 1939 (2492)
Q Consensus 1871 ---~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~--------~~G~~v~~a~ 1939 (2492)
.+||++++||++++|||+||+|||||++||+++++|||. ++.++||++|+|++++|. |+|+.+.+|+
T Consensus 326 ~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~--~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~ 403 (961)
T PRK13804 326 YEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRT--EIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDAN 403 (961)
T ss_pred ccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCC--cccccCCCCeEEccCCCccccccccccCCcchhhhh
Confidence 899999999999999999999999999999999999983 456799999999998877 8999999999
Q ss_pred HHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHH
Q psy15223 1940 KLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 2019 (2492)
Q Consensus 1940 ~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~ 2019 (2492)
+.|++.|+++|.|++.++++|+||||||||+|||+|+++|||+++++. ..++..||+++++++++|+|+|+++++++.+
T Consensus 404 ~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~-~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~ 482 (961)
T PRK13804 404 KAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKD-LGDGTTLRSRALDAIDKTRFVPAAGQNRLYN 482 (961)
T ss_pred HHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCc-ccchHHHHHHHHHHHhccEEECHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999971 1122349999999999999999999999999
Q ss_pred hhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC---CccCceeccccc
Q psy15223 2020 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD---DAVNYKKSNDTL 2096 (2492)
Q Consensus 2020 ~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~---~~~~~~~~~dvl 2096 (2492)
||++++||||||||+||||||+|||++ ++.. .+.+++.++.+.++..|++.||+....+++++ ++..++|++|||
T Consensus 483 ~i~~~~DWcISRQR~WG~PIP~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~Dvl 560 (961)
T PRK13804 483 MIEDRPDWVISRQRAWGVPIPIFVAED-GEIL-MDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDIL 560 (961)
T ss_pred HHhcCccceeeeeccCCceeeEEEcCC-CCEe-ccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcce
Confidence 999999999999999999999999975 4443 45678889999999999999998877777764 356799999999
Q ss_pred ccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCc
Q psy15223 2097 DVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 2176 (2492)
Q Consensus 2097 DvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv 2176 (2492)
|||||||++|..+++.+. ++.||+|+|++|+||+|||||++++++.++.+.+||++|++|||++|.+|+|||||+|||
T Consensus 561 DvWFdSg~s~~~~~~~~~--~~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNv 638 (961)
T PRK13804 561 DVWFDSGSTHAFVLEDRP--DLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNT 638 (961)
T ss_pred eeeecCCCCccccccCCc--ccCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCc
Confidence 999999999988776554 467999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhccChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHH
Q psy15223 2177 IKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII 2256 (2492)
Q Consensus 2177 i~p~~ii~~yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~ 2256 (2492)
|+|.+++++||||+||||++++++++|++|+++.++++.+.+++|+|++||+++++.+|.+....++...+..+|+|+++
T Consensus 639 IdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~ 718 (961)
T PRK13804 639 VSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLH 718 (961)
T ss_pred CCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999888765333233456788999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHH
Q psy15223 2257 NITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFT 2336 (2492)
Q Consensus 2257 ~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~ 2336 (2492)
+++++++.++++|++|+|++|++.+++|++++|||+||+.+|+|+|+...++..+++++++|+.+++.++++|+|||||+
T Consensus 719 ~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~ 798 (961)
T PRK13804 719 RLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFT 798 (961)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999877777888999999999999999999999999
Q ss_pred HHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeCh-
Q psy15223 2337 SEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK- 2415 (2492)
Q Consensus 2337 aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~- 2415 (2492)
|||||+.|++. ..+||+++.||+.++.+.++++++.|+.++.+|..|++++|++|+++.|++++++.|+|.+++
T Consensus 799 aEeiw~~L~~~-----~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v~l~~~~~ 873 (961)
T PRK13804 799 AEEAWLYRYPE-----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADP 873 (961)
T ss_pred HHHHHHhcccC-----CCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEEcCCH
Confidence 99999999842 236999999999887777888888999999999999999999999999999999999987643
Q ss_pred hhHHHHHHhHHHHHHhhhcccEEEeecCC---------CCceEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHh
Q psy15223 2416 LDFEILNEFGEELKFFLLTSSVSLFQIKN---------LSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNN 2486 (2492)
Q Consensus 2416 ~~~~~l~~~~~~L~~l~~vs~v~i~~~~~---------~~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~ 2486 (2492)
...+.+..+ +|+++++||+|++...+. ..+++|.|.++.++||||||+|+.++|.++++++||+||.+|
T Consensus 874 ~~~~~l~~~--~l~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~ 951 (961)
T PRK13804 874 ELLAALEGL--DFAEICITSQLTVAAGEAPADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAKA 951 (961)
T ss_pred HHHHHHHHH--HHHHHhhhCceEEecCCCcchhhcccccCceEEEEEeCCCCCCcCCCCCcCCcCCCCCCCCcChhHHHH
Confidence 445566655 599999999999964221 025789999999999999999999888888888999999999
Q ss_pred hhc
Q psy15223 2487 LFA 2489 (2492)
Q Consensus 2487 ~~~ 2489 (2492)
|.+
T Consensus 952 ~~~ 954 (961)
T PRK13804 952 LRE 954 (961)
T ss_pred HHh
Confidence 974
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-177 Score=1821.00 Aligned_cols=896 Identities=40% Similarity=0.725 Sum_probs=808.8
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
|+++++++|++|+++|+++++|++..+.+ .+++|+||+|||||||.||||||+|++++||++||+||+||+|+|+||||
T Consensus 1 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D 79 (974)
T PLN02843 1 MRANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWD 79 (974)
T ss_pred CCCChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccC
Confidence 68999999999999999999999865433 34679999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1648 CHGMPIEIQIEKLYGK----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~----~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
|||||||.+++|.++. ++++++|+++|++|+.++++.|++||+|||+++||+++|+||||.|+++++|+|.+|+++
T Consensus 80 ~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~ 159 (974)
T PLN02843 80 CHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLN 159 (974)
T ss_pred CCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHC
Confidence 9999999999998763 689999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCccccccccccee-eecceEEEEEeccCchh-hHhhhccCCCCCCccEEEEeecCcchhccccE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKK-KYDFSIYVGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQA 1801 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~-~~~~~~yv~f~~~~~~~-~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~a 1801 (2492)
|||||+.+||+|||+|+|+|||+||+|++ +.++++||+|++.+... +.... .. ...+.+++||||||||||||+|
T Consensus 160 GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~--~~-~~~~~~lviwTTtPwTlpan~A 236 (974)
T PLN02843 160 GYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEEL--EE-FLPGLSLAIWTTTPWTMPANAA 236 (974)
T ss_pred CCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCcccccccc--cc-ccccceEEEEeCcchhhccCcE
Confidence 99999999999999999999999999997 57999999999975321 10000 00 0013699999999999999999
Q ss_pred EEEcCCCCEEEEEecCC----------------------CCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeC
Q psy15223 1802 LHVHPEFDYALVHIKND----------------------PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFH 1859 (2492)
Q Consensus 1802 i~v~p~~~Y~~~~~~~~----------------------~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~ 1859 (2492)
|||||+++|++|+.+++ +.+.+|+|+++++++.+.++.+...+++++|++|+|++|.|
T Consensus 237 iaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~ 316 (974)
T PLN02843 237 VAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIH 316 (974)
T ss_pred EEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEEC
Confidence 99999999999997521 12579999999999999887652334999999999999999
Q ss_pred CCCccccCCCceecEE-ecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHH-h
Q psy15223 1860 PLSNIDINYNRLSPIY-LGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW-K 1937 (2492)
Q Consensus 1860 Pl~~~~~~~~~~~pi~-~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~-~ 1937 (2492)
||+ ++++||+ +++||++++|||+||+|||||++||+++++||| ++++++|++|+|++++|+|+|+.|+ +
T Consensus 317 P~~------~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l---~~~~~vd~~G~~~~~~~~~~G~~v~~~ 387 (974)
T PLN02843 317 PLY------NRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGL---PLLSPVDDAGKFTEEAGQFSGLSVLGE 387 (974)
T ss_pred CCC------CCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEccCCcccCCcEehhc
Confidence 998 7889996 589999999999999999999999999999999 8999999999999999999999998 8
Q ss_pred hhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHH
Q psy15223 1938 ASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRL 2017 (2492)
Q Consensus 1938 a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~ 2017 (2492)
||+.|++.|+++|.|++.+.++|+||||||||+|||+|+++|||+++++ ||+++++++++|+|+|+++++++
T Consensus 388 a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~--------~k~~al~~~~~v~~~P~~~~~r~ 459 (974)
T PLN02843 388 GNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEG--------FRQAALDAIDKVKWIPAQGENRI 459 (974)
T ss_pred chHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHH--------HHHHHHHHHhccEEEChHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCC----ccCceecc
Q psy15223 2018 KSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDD----AVNYKKSN 2093 (2492)
Q Consensus 2018 ~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~----~~~~~~~~ 2093 (2492)
.+||++++||||||||+||||||+|+|.+|+++. .+.+.+.+++++++..|++.||..++++++|+. ...+.|++
T Consensus 460 ~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~ 538 (974)
T PLN02843 460 RAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPL-MNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGT 538 (974)
T ss_pred HHHHhcCcceeeeeccccccEEEEEEEcCCCCEe-echhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecc
Confidence 9999999999999999999999999999998764 566888999999999999999998888888742 45699999
Q ss_pred cccccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeecc
Q psy15223 2094 DTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSK 2173 (2492)
Q Consensus 2094 dvlDvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~ 2173 (2492)
||||||||||++|..+++.+. ++.||+|+|++|+||+||||++++++++++.+..||+++++|||++|.+|+|||||+
T Consensus 539 DvlDvWFdSg~~~~~~~~~~~--~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSl 616 (974)
T PLN02843 539 DTMDVWFDSGSSWAGVLGSRE--GLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSL 616 (974)
T ss_pred cccccchhcCCChHHHhcccc--ccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCC
Confidence 999999999999988876554 567999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcchhhh---------ccChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy15223 2174 GNIIKPQKLCN---------LFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKI 2244 (2492)
Q Consensus 2174 GNvi~p~~ii~---------~yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~ 2244 (2492)
||||+|.++++ +||+|+||||++++++++|++|+.+.++++.+.+++|||+++|+++|+.+|++. ...+.
T Consensus 617 GNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~-~~~~~ 695 (974)
T PLN02843 617 GNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPD-NAVPY 695 (974)
T ss_pred CCcCCHHHHHhhccccccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcc-cccCc
Confidence 99999999999 799999999999999999999999999999999999999999999999888652 22333
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHH
Q psy15223 2245 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324 (2492)
Q Consensus 2245 ~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~ 2324 (2492)
.++..+|+|++++++++++++.++|++|+|++|++.+++|++.++||+||+.+|+|+|+...++..|++++++|+.+++.
T Consensus 696 ~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~ 775 (974)
T PLN02843 696 EDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLS 775 (974)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999998876677788999999999999
Q ss_pred HHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15223 2325 LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNS--KKLLYKYMILKKIRSKVMQKLEKIRSTGIIG 2402 (2492)
Q Consensus 2325 l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~--~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~ 2402 (2492)
++++|+|||||+|||||+.|+... .....+||+++.||+.++.+.+ ..+.+.|+.++++|.+|++++|.+|+++.|+
T Consensus 776 l~~LLaPimPf~aEEiw~~L~~~~-~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~ 854 (974)
T PLN02843 776 LLRAIAPILPHLAEDAWQNLPFQE-DGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIG 854 (974)
T ss_pred HHHHHhhhhhHHHHHHHHhccccc-cCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999997420 0012469999999998766654 4566779999999999999999999999999
Q ss_pred CCceeEEEEEeCh-hhHHHHHHh------HHHHHHhhhcccEEEeecCC----------------CCceEEEEEeCCCCC
Q psy15223 2403 SSLQAEIILKINK-LDFEILNEF------GEELKFFLLTSSVSLFQIKN----------------LSEECIIIKPSIYKK 2459 (2492)
Q Consensus 2403 ~~~~~~v~i~~~~-~~~~~l~~~------~~~L~~l~~vs~v~i~~~~~----------------~~~~~v~v~~~~~~k 2459 (2492)
+++++.|+|..++ +..+.++.+ .++|+++++||+|++...+. ..+++|.|.++.++|
T Consensus 855 ~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~k 934 (974)
T PLN02843 855 ASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQVEVVSSEDDETAACGSYTGEYVEGAGRVWVGVSRADGSK 934 (974)
T ss_pred cccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCceEeecCCCccccccchhccccccccCceEEEEEeCCCCC
Confidence 9999999987643 355667663 37899999999999964221 125788999999999
Q ss_pred CcccceEecCCCCCCCCCCCChhhHHhhhc
Q psy15223 2460 CNRCWHYQADVGERDDYPDLCNRCFNNLFA 2489 (2492)
Q Consensus 2460 C~RCw~~~~~~~~~~~~~~lC~rC~~~~~~ 2489 (2492)
|||||+|+.++|.++++++||+||.+||.+
T Consensus 935 C~RCW~~~~~~~~~~~~~~lC~rc~~~~~~ 964 (974)
T PLN02843 935 CERCWNYSPAVGSFSDHPTLCERCYPVVIA 964 (974)
T ss_pred CCCCCCEeCCcCCCCCCCCcChhhHHHHcC
Confidence 999999999998888888999999999974
|
|
| >KOG0433|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-171 Score=1548.29 Aligned_cols=873 Identities=35% Similarity=0.597 Sum_probs=785.5
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+++.|...++.+.++-|+...++..+ ....+++.|+++| +||+||||||+|+|++||+.||+.++|++|+|+|||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~q-ls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGw 101 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQ-LSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGW 101 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHH-HhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCC
Confidence 78889999999999999988877654 3456788999999 999999999999999999999999999999999999
Q ss_pred ccCChHHH-HHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1647 DCHGMPIE-IQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1647 D~hGlPie-~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
|||||||| .+|.+.+.. +++|.|+|++++.+|.+.|++|++.|+|||++.||.++|.|+||+|+..++++|.+|++
T Consensus 102 DchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lye 181 (937)
T KOG0433|consen 102 DCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYE 181 (937)
T ss_pred CcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHh
Confidence 99999999 688776654 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceee-ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKK-YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQA 1801 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~-~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~a 1801 (2492)
||||||+.|||||||+++|||||+|+||.+. .|+|+|++|++...+.-+ ... ......+|++||||||||||+|.|
T Consensus 182 kgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~--~~~-~~~~~~iyaLVWTTTPWTlPsN~A 258 (937)
T KOG0433|consen 182 KGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSA--HSE-DSKIPQIYALVWTTTPWTLPSNNA 258 (937)
T ss_pred ccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCcccc--ccC-CCccCcEEEEEEeCCCccccccce
Confidence 9999999999999999999999999999875 699999999997654211 111 112345899999999999999999
Q ss_pred EEEcCCCCEEEEEecCC-CCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcc
Q psy15223 1802 LHVHPEFDYALVHIKND-PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 1880 (2492)
Q Consensus 1802 i~v~p~~~Y~~~~~~~~-~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V 1880 (2492)
|||||+..|++++.++. .+++++||.++++++-...+.+...++++.|.+|+|.+|.||+.+ +...|++.++||
T Consensus 259 i~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~-----~~~~P~l~g~hV 333 (937)
T KOG0433|consen 259 ISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHN-----ELGLPILEGPHV 333 (937)
T ss_pred eeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCcc-----ccCCccccccce
Confidence 99999999999998732 247899999999998776665555558999999999999999974 677999999999
Q ss_pred ccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-CCCCccHH-hhhHHHHHHHHhcCCcceeeee
Q psy15223 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIW-KASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1881 ~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-~~~G~~v~-~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
+++.|||+||+|||||++||.++.++|| ++.++||+.|+|+.+++ .+.|+.|. |+++.|+..|. ..+++.++|
T Consensus 334 T~~~GTGLVHTAP~HG~eDYlv~l~~~l---~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky 408 (937)
T KOG0433|consen 334 TDTVGTGLVHTAPAHGFEDYLVAISKGL---RVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKY 408 (937)
T ss_pred ecCcccceeecCCCCChHHHHHHhhcCC---CcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcc
Confidence 9999999999999999999999999999 99999999999999987 79999998 58899999998 789999999
Q ss_pred ccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCce
Q psy15223 1959 EHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 2038 (2492)
Q Consensus 1959 ~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~p 2038 (2492)
.|+||++||||+|+|+|+|+|||+++++ +|..+.+++++|+|+|..+.+++..++..|++|||||||.||+|
T Consensus 409 ~HsYPYDWRTKKPvIiRAseQWFi~~e~--------~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvP 480 (937)
T KOG0433|consen 409 VHSYPYDWRTKKPVIIRASEQWFIDVEE--------IKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVP 480 (937)
T ss_pred cccCCcccccCCceEEecchhheeeHHh--------hhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCc
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC--------CccCceecccccccccccCcchhhhc
Q psy15223 2039 IAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD--------DAVNYKKSNDTLDVWFDSGITHQTVI 2110 (2492)
Q Consensus 2039 IP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~--------~~~~~~~~~dvlDvWfdSg~~~~~~~ 2110 (2492)
||++|++..+++ +...+.+.|+...++++|+|.||+.++++++|. ...+|.|++||||||||||.+|.+++
T Consensus 481 IP~ly~k~~~~~-l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~ 559 (937)
T KOG0433|consen 481 IPALYDKNGGSY-LSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVL 559 (937)
T ss_pred ceeEEecCCCce-eehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeec
Confidence 999999998876 478889999999999999999999999998873 24679999999999999999999988
Q ss_pred cCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-----
Q psy15223 2111 RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL----- 2185 (2492)
Q Consensus 2111 ~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~----- 2185 (2492)
+.. ...++|+|+||.||+|||||++|++++|..+++||+.|++|||++|++|.|||||+||||+|..+++.
T Consensus 560 ~~~----~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~p 635 (937)
T KOG0433|consen 560 DNE----REHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQP 635 (937)
T ss_pred CCC----CCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCC
Confidence 752 35789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHH
Q psy15223 2186 -FGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKE 2264 (2492)
Q Consensus 2186 -yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 2264 (2492)
||+|+||||++++++..|+..+++.|+++.+.+.|+||++||+++|+.++++....++..++.-+|+++|..|++++++
T Consensus 636 ayGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~ 715 (937)
T KOG0433|consen 636 AYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKR 715 (937)
T ss_pred CccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998878888889999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2265 ILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2265 v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
+++.|++|+|+++++.|..|++++||++||+++||||||+..++..|+++|++|.+++..++..++||+||++||+||+|
T Consensus 716 i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~l 795 (937)
T KOG0433|consen 716 IIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHL 795 (937)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCeeeccCCCCCccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHH
Q psy15223 2345 SDKNFYIESGETIFTQLHYKLPKVYNSKKLLY--KYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILN 2422 (2492)
Q Consensus 2345 ~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~--~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~ 2422 (2492)
+.. .+-+|...||.+...+.....++ .|..+++.|....+.+..++..+.++..+++.+.+.+..
T Consensus 796 P~~------~~~~f~~k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~------- 862 (937)
T KOG0433|consen 796 PGS------HEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTIR------- 862 (937)
T ss_pred CCC------CCcccccCccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeecccc-------
Confidence 954 12399999999988777654433 477889999999999998888888888888887776541
Q ss_pred HhHHHHHHhhhcccEEEeecCCC-----------CceEEEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhc
Q psy15223 2423 EFGEELKFFLLTSSVSLFQIKNL-----------SEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFA 2489 (2492)
Q Consensus 2423 ~~~~~L~~l~~vs~v~i~~~~~~-----------~~~~v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~ 2489 (2492)
.....|+++++++++++...... -+.+....++.+.||+|||+++.. ++.||.||.+++..
T Consensus 863 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~vE~~~~~~~~~~~~ra~~~~c~rcw~~~~~------~~~lc~rc~~~~~~ 934 (937)
T KOG0433|consen 863 IYESELPELLNVSQVILHENRDENSVELVESRLRYCERCRKHRATFSRCVRCWDLRKQ------DPPLCLRCQDLRFQ 934 (937)
T ss_pred cchhHHHHHHHHhhhhhhhhhcccchHHHHhhhHHHHHHHHHHhcccccHHHHhhhcc------CCcccchHHHHHhh
Confidence 11234555555555554443211 123344568999999999999863 34599999998754
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-158 Score=1628.44 Aligned_cols=883 Identities=25% Similarity=0.426 Sum_probs=739.5
Q ss_pred Cccceeeccchhhh----hhhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHH
Q psy15223 1552 KRILRTETASLVAL----AILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKD 1627 (2492)
Q Consensus 1552 ~rILR~ETA~~~~~----~~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~D 1627 (2492)
.++.+.|.|...-. -.++++++++|++|+++|+++++|++..+.+.++++|+|++|||||||.||||||+|++++|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikD 129 (1205)
T PTZ00427 50 VRIKTMEGAEMVTVTFTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKD 129 (1205)
T ss_pred cccccccccccccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHH
Confidence 34554444433321 34578899999999999999999998655456778899999999999999999999999999
Q ss_pred HHHHHHHHCCCccccccccccCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy15223 1628 IIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDN 1700 (2492)
Q Consensus 1628 ii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~ 1700 (2492)
+++||+||+||+|+|+|||||||||||.+++|.+|. ++++++|+++|++|+.++.+.|+++|+|||+|+||++
T Consensus 130 ii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~ 209 (1205)
T PTZ00427 130 CVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKN 209 (1205)
T ss_pred HHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCC
Confidence 999999999999999999999999999999999874 3799999999999999999999999999999999999
Q ss_pred eeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccc--cceeeecceEEEEEeccCchhh--------
Q psy15223 1701 SYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI--EYKKKYDFSIYVGFSFSEPEKI-------- 1770 (2492)
Q Consensus 1701 ~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Ev--ey~~~~~~~~yv~f~~~~~~~~-------- 1770 (2492)
+|.||||.|++.++|+|.+|+++|||||+.+||+|||.|+|+|||+|| +|++..+|++||+|++.+....
T Consensus 210 ~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~ 289 (1205)
T PTZ00427 210 DYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIE 289 (1205)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeeccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999 8999999999999999753100
Q ss_pred ------Hh----hhcc---CC--C---------CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhh
Q psy15223 1771 ------KS----IFNL---KN--L---------PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILA 1826 (2492)
Q Consensus 1771 ------~~----~~~~---~~--~---------~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a 1826 (2492)
.. .+.. .. . ..++.+++||||||||||||+||||||+++|+.++... +++.+|+|
T Consensus 290 ~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~-~~~~~i~a 368 (1205)
T PTZ00427 290 EDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVK-SNRVVIVG 368 (1205)
T ss_pred ccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecC-CCeEEEEe
Confidence 00 0000 00 0 01246999999999999999999999999999998632 24789999
Q ss_pred HHhHHHHHHHcCC--cCceE-EEEecccccccEEeCCCCccc---cCCCceecEEecCccccCCCCceEEcCCCCChhhH
Q psy15223 1827 FNLVKSCLKKFGF--KGNII-GICKGIKLSKINFFHPLSNID---INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF 1900 (2492)
Q Consensus 1827 ~~~~~~~~~~~~~--~~~~v-~~~~G~~l~g~~~~~Pl~~~~---~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~ 1900 (2492)
+++++.++++.+. +.++| .+++|++|+|++|.+|+..+. +..++.+||++++||++++|||+||+|||||++||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy 448 (1205)
T PTZ00427 369 ECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDF 448 (1205)
T ss_pred hHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHH
Confidence 9999999988764 34555 999999999999998873211 11267899999999999999999999999999999
Q ss_pred HHHHHcCCCC--C-CcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeec
Q psy15223 1901 LIFKKQNMKD--S-DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 1977 (2492)
Q Consensus 1901 ~~~~~~~l~~--~-~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~ 1977 (2492)
++|++|||+. . ++++|+|++|+|++++|.|+|+.|++|++.|++.|+++|.|++.+++.|+||||||||+|||++++
T Consensus 449 ~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~ 528 (1205)
T PTZ00427 449 RVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAI 528 (1205)
T ss_pred HHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEec
Confidence 9999999932 1 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHH
Q psy15223 1978 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE 2056 (2492)
Q Consensus 1978 ~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~ 2056 (2492)
+||||++++ +++++++++++++|+|++. +++|.+||++++|||||||||||||||+|+|++|+.... ..
T Consensus 529 ~QWFI~~~~--------~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~--i~ 598 (1205)
T PTZ00427 529 PAWFIRVSN--------STNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVIC--VE 598 (1205)
T ss_pred ceeEEeCcH--------HHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEec--cC
Confidence 999999998 9999999999999999998 699999999999999999999999999999998876431 22
Q ss_pred HHHHHHHHHhhcCc-cccccc-chhhhc-CC--CccCceecccccccccccCcchhhhccCC-----ccccCCcCceeee
Q psy15223 2057 LIELIAKKIELNGI-EIWQNL-DIKEFL-GD--DAVNYKKSNDTLDVWFDSGITHQTVIRGS-----HKKQLIFPADLYL 2126 (2492)
Q Consensus 2057 ~~~~i~~~~~~~g~-~~w~~~-~~~~~~-~~--~~~~~~~~~dvlDvWfdSg~~~~~~~~~~-----~~~~~~~P~Dl~~ 2126 (2492)
.++++.+.....+. +.|... +...+. |+ ....++|++||||||||||++|++.+..+ ..++.+||+|+++
T Consensus 599 s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~ 678 (1205)
T PTZ00427 599 SIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIA 678 (1205)
T ss_pred CHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEE
Confidence 23333322221122 234331 111122 21 12359999999999999999999988642 2335689999999
Q ss_pred cccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CC-CCcc
Q psy15223 2127 EGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DY-SKDL 2204 (2492)
Q Consensus 2127 ~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~-~~d~ 2204 (2492)
+|.||+||||+++++.+.+++++.||++|++||||+|++|+|||||+||||+|.++|++||||+|||||+++ .. ++|+
T Consensus 679 eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl 758 (1205)
T PTZ00427 679 EGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENL 758 (1205)
T ss_pred EecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 44 6899
Q ss_pred cccHHHHHH-HHHHHHHHHHHHHHHHhcCCCCC--------CCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHH
Q psy15223 2205 SISNEILNR-VVETYRRIRNTLRFLLANTSDFN--------PNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFH 2275 (2492)
Q Consensus 2205 ~fs~~~l~~-~~~~~~kl~n~~r~~~~~~~~~~--------~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~ 2275 (2492)
+|+++.+.+ ..+.++++||+++|+.+++.++. +..... ......+|+||+++++++++.++++|++|+|+
T Consensus 759 ~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~-~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~ 837 (1205)
T PTZ00427 759 KFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYI-YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLY 837 (1205)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 999998864 56778999999999988765332 111000 12346789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCc-c----
Q psy15223 2276 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF-Y---- 2350 (2492)
Q Consensus 2276 ~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~-~---- 2350 (2492)
+|++.|++|++ ++|+||++++|+|+|.... ..++.+++++|+++|+.+++||||||||+|||||+.|+.... .
T Consensus 838 ~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~ 915 (1205)
T PTZ00427 838 NVLPKLLQFIE-NLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNE 915 (1205)
T ss_pred HHHHHHHHHHH-HhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccc
Confidence 99999999996 6999999999999997532 345678999999999999999999999999999999964100 0
Q ss_pred --------------ccCCCCeeeccCCCCCccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeE-EEEEe-
Q psy15223 2351 --------------IESGETIFTQLHYKLPKVY-NSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAE-IILKI- 2413 (2492)
Q Consensus 2351 --------------~~~~~sV~~~~wP~~~~~~-~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~-v~i~~- 2413 (2492)
....+|||++.||+.++.. .|+++++.|+.++ .+...+|++|++.+++.+.+.. ++|..
T Consensus 916 ~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~----~ii~~~R~~R~~~~i~~r~pl~~~~v~~~ 991 (1205)
T PTZ00427 916 NNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMK----DVILLGRVLRERRKVASKKPLKSITILHP 991 (1205)
T ss_pred cccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCccceeEEecC
Confidence 0013699999999987665 5777777776664 5778889999999988877654 44543
Q ss_pred ChhhHHHHHHhHHHHHHhhhcccEEEeecCCCCceEEEEEe
Q psy15223 2414 NKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKP 2454 (2492)
Q Consensus 2414 ~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v~~ 2454 (2492)
+....+.++.+.+.|++.++|.+|++..... .+.+++.+
T Consensus 992 ~~~~~~~~~~~~~~i~~e~nv~~v~~~~~~~--~~~~~~~p 1030 (1205)
T PTZ00427 992 NESYFKNFDQISNYIKEELNVLNVECSNDTS--CLDFSAIP 1030 (1205)
T ss_pred cHHHHHHHHHHHHHHHHhhCcceEEEEecCc--eEEEEEEe
Confidence 3445566788889999999999999876532 24444443
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-158 Score=1639.04 Aligned_cols=837 Identities=24% Similarity=0.421 Sum_probs=722.2
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|++.. .++++|+|+|+||||||||.||||||+|+|+|||++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 25 ~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~ 104 (1159)
T PLN02882 25 DAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRR 104 (1159)
T ss_pred CCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCc
Confidence 4565544 456788999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.+++++|+++|++++.++++.|+++|+|||+|+||+++|.||||.|++.++|+|.+|+++|||||+.+||+|||.|
T Consensus 105 ~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~ 184 (1159)
T PLN02882 105 DDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTAC 184 (1159)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccc--cccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecC
Q psy15223 590 KSALAEAEI--EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN 667 (2492)
Q Consensus 590 ~taLae~Ev--ey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~ 667 (2492)
+|+||++|+ +|+++.++++||+|++.+.. .+.+++||||||||||||+||||||+++|++++...
T Consensus 185 ~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~-------------~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~ 251 (1159)
T PLN02882 185 KTPLSNFEAGLNYKDVSDPAVMVSFPIVGDP-------------DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKY 251 (1159)
T ss_pred CCCcchhhhhhhcccCCCcEEEEEEEecCCC-------------CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecC
Confidence 999997666 89999999999999986521 236999999999999999999999999999998642
Q ss_pred CCCceeeeeHHhHHHHHHHcC-----------CcCc-EEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCC
Q psy15223 668 DPPLLLILAFNLVKSCLKKFG-----------FKGN-IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSG 735 (2492)
Q Consensus 668 ~~~~~~i~a~~~~~~~~~~~~-----------~~~~-~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~G 735 (2492)
.++.||+|+++++++.+..+ .+++ ++++++|++|+|++|.|||.......++.+||++++||++++|
T Consensus 252 -~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~G 330 (1159)
T PLN02882 252 -TGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSG 330 (1159)
T ss_pred -CCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCC
Confidence 14799999999999987652 2234 4499999999999998776211111246899999999999999
Q ss_pred CccEEecCCCCHHHHHHHHHcCCCCC--CcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccc
Q psy15223 736 TGIVHSAPAYGIEDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYM 813 (2492)
Q Consensus 736 TG~Vh~aPahg~~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp 813 (2492)
||+||+|||||++||.+|++|||+.+ ++++|||++|+|++++|+|+|+.+++|++.|++.|+++|.|++.+++.|+||
T Consensus 331 TGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp 410 (1159)
T PLN02882 331 TGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYP 410 (1159)
T ss_pred cceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCC
Confidence 99999999999999999999999422 4789999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hHHHHHHHhcCCCeeeeccccCCceeeEE
Q psy15223 814 HCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFF 892 (2492)
Q Consensus 814 ~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~rl~~~l~~~~DWcISRqr~WGvpIP~~ 892 (2492)
||||||+|||||+++||||++++ +|+++++++++++|+|+++ ++|+.+||++++||||||||+||||||+|
T Consensus 411 ~cwR~~tpli~~a~~qWFi~~~~--------~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw 482 (1159)
T PLN02882 411 FCWRSDTPLIYRAVPSWFVKVEE--------IKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIW 482 (1159)
T ss_pred EeeCCCCEEEEEecceeEEEcHH--------HHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceE
Confidence 99999999999999999999988 9999999999999999999 58999999999999999999999999999
Q ss_pred EECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhh-cCCC----ccCceecCCccccccccccccchhcccCcc--
Q psy15223 893 IHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEF-LGDD----AVNYKKSNDTLDVWFDSGITHQTVIRGSHK-- 965 (2492)
Q Consensus 893 ~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~-~~~~----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-- 965 (2492)
+|+++++.+ ....++++.+.....+.|.|+. ...++ +++. ...++|++||||||||||++|+++++++.+
T Consensus 483 ~~~~~~~~~--~~~s~~el~~~~~~~~~dlh~~-~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~ 559 (1159)
T PLN02882 483 ISDDGEEVV--VIGSIAELEKLSGVKVTDLHRH-FIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENK 559 (1159)
T ss_pred EeCCCCeEE--ecCcHHHHHHHhCCchhhcccc-chhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccCh
Confidence 998876543 2345666666666667788875 33333 3321 247999999999999999999999976532
Q ss_pred --ccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHH
Q psy15223 966 --KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 1043 (2492)
Q Consensus 966 --~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl 1043 (2492)
+...||+|++++|+||+||||+++++.++++++.+||++|++|||++|++|+|||||+||+|+|.+++++||||+|||
T Consensus 560 ~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~ 639 (1159)
T PLN02882 560 ELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRL 639 (1159)
T ss_pred hHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHH
Confidence 245799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCc--ccccccCHHHHHHH-HHHHHHHHHHHHHHhhcCCC--------CCCCcccccccccchHHHHHHHHHHHHH
Q psy15223 1044 WVASTDY--SKDLSISNEILNRV-VETYRRIRNTLRFLLANTSD--------FNPNINIIKISDMVEIDKYAIINITNLQ 1112 (2492)
Q Consensus 1044 ~l~s~~~--~~d~~fs~~~l~~~-~~~~~kl~n~~rf~l~~l~~--------~~~~~~~~~~~~~~~~D~~il~~l~~~~ 1112 (2492)
|++++++ .+|++|+.+.+.+. .+.+.++||++||+++++.+ |.|............+|+||++++++++
T Consensus 640 ~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li 719 (1159)
T PLN02882 640 YLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLV 719 (1159)
T ss_pred HHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHH
Confidence 9998765 57899999888765 46899999999999988754 3332100000223678999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q psy15223 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 1192 (2492)
Q Consensus 1113 ~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~ 1192 (2492)
+.+.++|++|+|++|++.|++|++ +|||+|++..|+|+|... ++.++++++++|+++|..++++|+|||||+||+||+
T Consensus 720 ~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q 797 (1159)
T PLN02882 720 KFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQ 797 (1159)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 999999999999999999999995 699999999999999864 456788999999999999999999999999999999
Q ss_pred HccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHH-HH
Q psy15223 1193 IFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFE-IL 1271 (2492)
Q Consensus 1193 ~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~-~l 1271 (2492)
+|+.. .....+|||++.||+.++.+.+.++++.|+.++++++.++.+.+ |....++.++++.+++..+.+..+ .+
T Consensus 798 ~L~~~--~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~--~~~~~~~~pl~~~~~~~~~~~~~~~~~ 873 (1159)
T PLN02882 798 NLRKV--LPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRE--RHNKPLKTPLKEMVVVHPDAEFLDDIT 873 (1159)
T ss_pred Hhccc--cCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHH--HcCCCCCCccceeeEecCCHHHHHHHH
Confidence 99751 00124799999999977766677888899999999888876644 555567788887666655544433 33
Q ss_pred HHhHHHHHHhhhccceEEeecCCCCceEEEEEecC
Q psy15223 1272 NEFGEELKFFLLTSSVSLFQIKNLSEECIIIKPSI 1306 (2492)
Q Consensus 1272 ~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v~~~~ 1306 (2492)
..+.+.|.+.++|.+|++.+... .-+.+.+.+..
T Consensus 874 ~~~~~~i~~e~nv~~v~~~~~~~-~~~~~~~~pn~ 907 (1159)
T PLN02882 874 GKLKEYVLEELNVRSLVPCNDPL-KYASLRAEPNF 907 (1159)
T ss_pred HHHHHHHHHhhCcceEEEeeccc-ceEEEEEeeCc
Confidence 67888999999999999865322 22355555533
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-158 Score=1622.19 Aligned_cols=849 Identities=25% Similarity=0.429 Sum_probs=710.8
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|++.. .+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 89 ~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k 168 (1205)
T PTZ00427 89 DAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKK 168 (1205)
T ss_pred CCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcc
Confidence 3455443 245678899999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.+++++|+++|++|+.++.+.|+++|+|||+|+||+++|+||||.|++.++|+|.+|+++|||||+.+||+|||.|
T Consensus 169 ~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c 248 (1205)
T PTZ00427 169 EDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKC 248 (1205)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccc--cccceeccEEEEEeecCCchhh--------------hhhhccC------C------------CCCCCeE
Q psy15223 590 KSALAEAEI--EYKKKYDFSIYVGFSFSEPEKI--------------KSIFNLK------N------------LPSGKGY 635 (2492)
Q Consensus 590 ~taLae~Ev--ey~~~~~~s~yv~f~~~~~~~~--------------~~~~~~~------~------------~~~~~~~ 635 (2492)
+||||++|| +|+|+.+||+||+|++.+.... ...+.+. . ....+.+
T Consensus 249 ~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1205)
T PTZ00427 249 NTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSE 328 (1205)
T ss_pred CCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCE
Confidence 999999999 8999999999999999752100 0000000 0 0012479
Q ss_pred EEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC--cCc-EEEEEecccccCCEEecCCc
Q psy15223 636 IVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF--KGN-IIGICKGIKLSKINFFHPLS 712 (2492)
Q Consensus 636 ~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~--~~~-~~~~~~G~~l~g~~~~~P~~ 712 (2492)
++||||||||||||+||||||+++|+.++... .++.||+|+++++.++++.++ ++. ++.+++|++|+|++|.||+.
T Consensus 329 lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~-~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~ 407 (1205)
T PTZ00427 329 ILAWTTTPWTLPSNLALCVNEHFTYLRIHHVK-SNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFT 407 (1205)
T ss_pred EEEEECCchhhhhceEEEECCCCeEEEEEecC-CCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCcc
Confidence 99999999999999999999999999998622 247899999999999988865 333 44999999999999998873
Q ss_pred ccc---cCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCC--CC-CcccccCCCCcccccCCCCCCcchh
Q psy15223 713 NID---INYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK--DS-DIINPVMDDGNFISTLPLFGGMSIW 786 (2492)
Q Consensus 713 ~~~---~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~--~~-~~~~~vd~~G~~~~~~~~~~G~~v~ 786 (2492)
... +..++.+|||+++||++++|||+||+|||||++||.+|++|||+ .. ++++|||++|+|++++|+|+|+.++
T Consensus 408 ~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ 487 (1205)
T PTZ00427 408 NFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIK 487 (1205)
T ss_pred ccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHH
Confidence 111 11267899999999999999999999999999999999999993 11 3689999999999999999999999
Q ss_pred hchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hH
Q psy15223 787 KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KD 865 (2492)
Q Consensus 787 ~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~ 865 (2492)
+|++.|++.|+++|.|++.+++.|+||||||||+||||++++||||++++ +++++++++++++|+|++. ++
T Consensus 488 dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~--------~k~~~l~~~~~i~w~P~~~~~~ 559 (1205)
T PTZ00427 488 EADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSN--------STNELVKNNETTYWIPAHIKEK 559 (1205)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcH--------HHHHHHHcCCccEEeCchhhHh
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999998 69
Q ss_pred HHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC-cccccc-Cchhhc-CCC--ccCce
Q psy15223 866 RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI-EIWQNL-DIKEFL-GDD--AVNYK 940 (2492)
Q Consensus 866 rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-~~w~~~-~~~~~~-~~~--~~~~~ 940 (2492)
|+.+||++++||||||||+||||||+|+|++||... ..+.++++.+.....+. +.|... +...+. +++ +..++
T Consensus 560 r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~--~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~ 637 (1205)
T PTZ00427 560 KFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVI--CVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLK 637 (1205)
T ss_pred HHHHHHhcCccceeeeccccCccceeEEcCCCCeEe--ccCCHHHHHHHhccccchhhcccccChhhccCCcccccccee
Confidence 999999999999999999999999999999888654 22334444433322222 344331 222222 211 23699
Q ss_pred ecCCccccccccccccchhcccCc-----cccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCC
Q psy15223 941 KSNDTLDVWFDSGITHQTVIRGSH-----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSK 1015 (2492)
Q Consensus 941 ~~~dvlDvWfdSg~~~~~~~~~~~-----~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~ 1015 (2492)
+++||||||||||++|++.++++. +++.+||+|++++|.||+||||+++++.++++++++||++|++|||++|++
T Consensus 638 r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~d 717 (1205)
T PTZ00427 638 RIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASD 717 (1205)
T ss_pred ecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCC
Confidence 999999999999999999887532 235789999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCcchhhhhcChhhHHHHhhcc-Cc-ccccccCHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCC-----
Q psy15223 1016 GKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DY-SKDLSISNEILNR-VVETYRRIRNTLRFLLANTSDFNP----- 1087 (2492)
Q Consensus 1016 G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~-~~d~~fs~~~l~~-~~~~~~kl~n~~rf~l~~l~~~~~----- 1087 (2492)
|+|||||+||+|+|.++|++||||+||||+++. .. .+|++|+++.+.+ ..+.+.++||++||+++++.++..
T Consensus 718 G~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~ 797 (1205)
T PTZ00427 718 GKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQ 797 (1205)
T ss_pred CCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999974 54 6899999998864 567788999999999988764321
Q ss_pred ---CcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHH
Q psy15223 1088 ---NINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSA 1164 (2492)
Q Consensus 1088 ---~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa 1164 (2492)
..... ......+|+||+++++++++.++++|++|+|++|++.|++|++ +||+||++++|+|+|++.. ...+.++
T Consensus 798 f~~~~~~~-~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~-~~~~~~a 874 (1205)
T PTZ00427 798 FLFNTDYI-YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLG-EENCLQS 874 (1205)
T ss_pred CCcCcccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHHHHHcchhhccCCC-cHHHHHH
Confidence 11000 1235678999999999999999999999999999999999995 6999999999999998633 3456789
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCc-c------------------ccCCCceeeccCCCCcccC-CchHH
Q psy15223 1165 QTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF-Y------------------IESGETIFTQLHYKLPKVY-NSKKL 1224 (2492)
Q Consensus 1165 ~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~-~------------------~~~~~SV~~~~wp~~~~~~-~~~~~ 1224 (2492)
+++|+++|+.++++|||||||+|||+|+.|+.... . ....+|||++.||+.++.. .+.++
T Consensus 875 ~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~ 954 (1205)
T PTZ00427 875 LCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEI 954 (1205)
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHH
Confidence 99999999999999999999999999999964100 0 0013699999999976554 46677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcce-EEEEEe-CchhHHHHHHhHHHHHHhhhccceEEeecCCCCceEEEE
Q psy15223 1225 LYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA-EIILKI-NKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIII 1302 (2492)
Q Consensus 1225 ~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a-~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v 1302 (2492)
++.++.++++ ...++.+|...+++..... .++|.. ++...+.++.+.+.|.+.++|.+|++..... .+.+.+
T Consensus 955 e~~~~~~~~i----i~~~R~~R~~~~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~~~--~~~~~~ 1028 (1205)
T PTZ00427 955 IELIEKMKDV----ILLGRVLRERRKVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSNDTS--CLDFSA 1028 (1205)
T ss_pred HHHHHHHHHH----HHHHHHHHHHcCCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEecCc--eEEEEE
Confidence 7777777754 4455678888877755443 344533 3445566788888999999999999875432 245555
Q ss_pred EecC
Q psy15223 1303 KPSI 1306 (2492)
Q Consensus 1303 ~~~~ 1306 (2492)
.+..
T Consensus 1029 ~pn~ 1032 (1205)
T PTZ00427 1029 IPNY 1032 (1205)
T ss_pred Eech
Confidence 5533
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-157 Score=1633.27 Aligned_cols=841 Identities=25% Similarity=0.425 Sum_probs=727.3
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.++++++|++|+++|+++++|++..+.+.++++|+|++|||||||.|||||++|++++||++||+||+||+|+|+|||||
T Consensus 7 ~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~ 86 (1159)
T PLN02882 7 DFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDC 86 (1159)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCC
Confidence 46889999999999999999998765566788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||||.+++|.+|. ++++++|+++|++|+.++++.|+++|+|||+|+||+++|.||||.|++.++|+|.+|+
T Consensus 87 hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~ 166 (1159)
T PLN02882 87 HGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF 166 (1159)
T ss_pred CCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH
Confidence 999999999999885 3789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCcccccccc--cceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccc
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEI--EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Ev--ey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~ 1799 (2492)
++|||||+.+||+|||.|+|+||++|+ +|++..++++||+|++.+.. .+.+++||||||||||||
T Consensus 167 ~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~-------------~~~~l~iwTTtPwTLpsn 233 (1159)
T PLN02882 167 EKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDP-------------DNASFVAWTTTPWTLPSN 233 (1159)
T ss_pred HCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCC-------------CCcEEEEEeCCccccccC
Confidence 999999999999999999999998777 79999999999999986421 236999999999999999
Q ss_pred cEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC-----------CcCceE-EEEecccccccEEeCCCCccccC
Q psy15223 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG-----------FKGNII-GICKGIKLSKINFFHPLSNIDIN 1867 (2492)
Q Consensus 1800 ~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~-----------~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~ 1867 (2492)
+||||||+++|++++...+ ++.||+|+++++++.+..+ .+.+++ ++++|++|+|++|.+||..+...
T Consensus 234 ~Al~VnP~~~Y~~v~~~~~-~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~ 312 (1159)
T PLN02882 234 LALCVNPNFTYVKVRNKYT-GKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEF 312 (1159)
T ss_pred eEEEECCCCcEEEEEecCC-CeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccc
Confidence 9999999999999986422 3789999999999886642 233555 99999999999998776322111
Q ss_pred CCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCC--CcccccCCCCccccCCCCCCCccHHhhhHHHHHH
Q psy15223 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSY 1945 (2492)
Q Consensus 1868 ~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~ 1945 (2492)
.++.+||++++||++++|||+||+|||||++||++|++|||+.+ +++++||++|+|+++++.|+|+.|++|++.|++.
T Consensus 313 ~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~ 392 (1159)
T PLN02882 313 SDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAA 392 (1159)
T ss_pred cCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHH
Confidence 24689999999999999999999999999999999999999432 5899999999999999999999999999999999
Q ss_pred HHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCC
Q psy15223 1946 LKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNR 2024 (2492)
Q Consensus 1946 L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~ 2024 (2492)
|+++|.|++.+++.|+||||||||+|+|+++++||||++++ +|+++++++++++|+|++. ++||.+||+++
T Consensus 393 Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~--------~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~ 464 (1159)
T PLN02882 393 IKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEE--------IKDRLLENNKQTYWVPDYVKEKRFHNWLENA 464 (1159)
T ss_pred HHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHH--------HHHHHHHhhCCcEEECCcchhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999988 9999999999999999999 58999999999
Q ss_pred CCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhh-cCCC----ccCceecccccccc
Q psy15223 2025 PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEF-LGDD----AVNYKKSNDTLDVW 2099 (2492)
Q Consensus 2025 ~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~-~~~~----~~~~~~~~dvlDvW 2099 (2492)
+||||||||+||||||+|+|++++.... ...++++.+.....+.|.|+. ..+++ +|+. ...++|++||||||
T Consensus 465 ~DW~ISRqR~WGtPIPvw~~~~~~~~~~--~~s~~el~~~~~~~~~dlh~~-~id~i~~p~~~~~~~~~~~r~~dVlD~W 541 (1159)
T PLN02882 465 RDWAVSRSRFWGTPLPIWISDDGEEVVV--IGSIAELEKLSGVKVTDLHRH-FIDHITIPSSRGPEFGVLRRVDDVFDCW 541 (1159)
T ss_pred cccceeeccccCCccceEEeCCCCeEEe--cCcHHHHHHHhCCchhhcccc-chhhhccccccCCchhceEecCceeeee
Confidence 9999999999999999999988765321 223444555444456677765 33333 3321 23699999999999
Q ss_pred cccCcchhhhccCCc----cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCC
Q psy15223 2100 FDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN 2175 (2492)
Q Consensus 2100 fdSg~~~~~~~~~~~----~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN 2175 (2492)
||||++|++++..+. .++..||+|++++|+||+||||+++++.++++++.+||++|++|||++|++|+|||||+||
T Consensus 542 FdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGN 621 (1159)
T PLN02882 542 FESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKN 621 (1159)
T ss_pred eccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCC
Confidence 999999999986542 2244699999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhccChhHHHHHHhccCC--CCcccccHHHHHHH-HHHHHHHHHHHHHHHhcCCC--------CCCCcccccc
Q psy15223 2176 IIKPQKLCNLFGAEILRLWVASTDY--SKDLSISNEILNRV-VETYRRIRNTLRFLLANTSD--------FNPNINIIKI 2244 (2492)
Q Consensus 2176 vi~p~~ii~~yGaD~lR~~l~s~~~--~~d~~fs~~~l~~~-~~~~~kl~n~~r~~~~~~~~--------~~~~~~~~~~ 2244 (2492)
+|+|.+++++||||+|||||+++++ .+|++|+++.+.+. .+.++++||+++|+++++.+ |.|.......
T Consensus 622 vIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~ 701 (1159)
T PLN02882 622 YPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQ 701 (1159)
T ss_pred CCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCcccccccc
Confidence 9999999999999999999998764 58899999988765 56899999999999887644 3332100000
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHH
Q psy15223 2245 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324 (2492)
Q Consensus 2245 ~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~ 2324 (2492)
.....+|+||+++++++++.++++|++|+|++|++.+++|++ ++||+||+.+|+|+|... ++.++++++++|+++++.
T Consensus 702 ~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~vL~~ 779 (1159)
T PLN02882 702 NSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYNVLLT 779 (1159)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHHHHHH
Confidence 123678999999999999999999999999999999999995 699999999999999864 446788999999999999
Q ss_pred HHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC
Q psy15223 2325 LLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGI--IG 2402 (2492)
Q Consensus 2325 l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~--i~ 2402 (2492)
++++|+|||||+||+||+.|++.. ....+|||++.||+.++.+.+++++..|+.+++++.. ++++|.+.+ ++
T Consensus 780 l~~LLaPfmPf~aEeI~q~L~~~~--~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~----~r~~r~~~~~~~~ 853 (1159)
T PLN02882 780 SCKVMAPFTPFFTEVLYQNLRKVL--PGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIEL----ARNIRERHNKPLK 853 (1159)
T ss_pred HHHHhhchhhHHHHHHHHHhcccc--CCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHH----HHHHHHHcCCCCC
Confidence 999999999999999999997520 1134799999999988777788888888888765554 455555554 55
Q ss_pred CCceeEEEEEeChhhH-HHHHHhHHHHHHhhhcccEEEeec
Q psy15223 2403 SSLQAEIILKINKLDF-EILNEFGEELKFFLLTSSVSLFQI 2442 (2492)
Q Consensus 2403 ~~~~~~v~i~~~~~~~-~~l~~~~~~L~~l~~vs~v~i~~~ 2442 (2492)
.+++..+++..+.+.. +.++.+.+.|.+.++|.+|++...
T Consensus 854 ~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~ 894 (1159)
T PLN02882 854 TPLKEMVVVHPDAEFLDDITGKLKEYVLEELNVRSLVPCND 894 (1159)
T ss_pred CccceeeEecCCHHHHHHHHHHHHHHHHHhhCcceEEEeec
Confidence 5555555554444333 333678889999999999998754
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-157 Score=1518.72 Aligned_cols=768 Identities=27% Similarity=0.483 Sum_probs=698.0
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.++..++|++|++.|++++.|+... +...++|+|..||||++|.||||||+++|+.|+++||+||+||+|+|+|||||
T Consensus 4 ~ydp~~iE~k~~~~W~~~~~f~~~~--~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 4 TYDPKEIEEKWYKKWEESGYFKPDP--NEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCChhhhhHHHHHHHHhcCCccCCC--CCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 3678899999999999999998742 22215699999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLY---GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~---~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
+|+|+|.++||++ |+ ++++++|+++|++|.+++.+.+++|++|||+|+||+++|+||||.+.+.|+.+|.+||+
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 54 78899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.++|||||.|+|||||.||+|++..+..+|++|++.+. +.+|+|||||||||+|++||
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~---------------~~~i~VATTRPEtmlgdtAV 226 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADG---------------DGYLVVATTRPETLLGDTAV 226 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCC---------------CceEEEEecCccccccceEE
Confidence 999999999999999999999999999999999999999998753 35999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
+|||++ +||+ +|+|+.+++|+. ++++||+.++||++
T Consensus 227 aVhP~D--------------------------eRYk------------~LvGk~v~lPl~------~r~IpIiaD~~VD~ 262 (877)
T COG0525 227 AVHPDD--------------------------ERYK------------HLVGKEVILPLV------GREIPIIADEYVDP 262 (877)
T ss_pred EECCCC--------------------------hhhH------------hhcCCEEecCCC------CCeeeeecCcccCC
Confidence 999995 3565 799999999999 99999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-CCCCccHHhhhHHHHHHHHhcCCcceeeeeccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 1961 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 1961 (2492)
++|||+|+++||||++||+++++|+| |+++.+|++|+++++++ +|+||++++||++|++.|++.|+|++.+++.|+
T Consensus 263 eFGTG~VkItpahD~nD~e~~krh~L---p~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~ 339 (877)
T COG0525 263 EFGTGAVKITPAHDFNDYEVGKRHNL---PLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHS 339 (877)
T ss_pred cCCCceEEecCCCCchhhhhhhcCCC---CceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeecccc
Confidence 99999999999999999999999999 99999999999998885 999999999999999999999999999999999
Q ss_pred cccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCcee
Q psy15223 1962 YMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPI 2039 (2492)
Q Consensus 1962 ~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pI 2039 (2492)
+|||||||+||++++++|||+++.. +++.++++.+ +++|+|+..++++.+|+++++||||||||||||||
T Consensus 340 V~~~~R~g~~IEp~ls~QWfVk~~~--------la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~I 411 (877)
T COG0525 340 VGHCERCGTPIEPLLSKQWFVKVLE--------LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRI 411 (877)
T ss_pred CccccCCCceeeeeecceeeEEhHh--------hHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCccc
Confidence 9999999999999999999999988 9999999999 99999999999999999999999999999999999
Q ss_pred eEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCccc---
Q psy15223 2040 AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--- 2116 (2492)
Q Consensus 2040 P~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--- 2116 (2492)
|+|||++||.+.+.... .+ +.+- ... +....+.+++||||||||||++|++++++..+.
T Consensus 412 PvWy~~~~g~v~v~~~~-~~-----------~~~~----~~~--~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l 473 (877)
T COG0525 412 PVWYCKECGNVVVAEEE-PE-----------DPAA----AEK--CPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDL 473 (877)
T ss_pred ceEEecCCCcEEeCCcc-cc-----------chhh----hcc--CchhcccCCcchhhhhhhcccccccccCCCCcchHH
Confidence 99999998887543221 00 0000 000 011467899999999999999999999876532
Q ss_pred cCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2117 QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2117 ~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
+..||.|+.++|.||+|+|..+|++.+..+.++.||+.|++||+|+|++|+|||||+||||||.++|++||+|+||||++
T Consensus 474 ~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la 553 (877)
T COG0525 474 KKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLA 553 (877)
T ss_pred HhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHH
Q psy15223 2197 ST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFH 2275 (2492)
Q Consensus 2197 s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~ 2275 (2492)
+. ..++|++|+++.++...++.+||||+.||+++++.+..+.... ....+.+|+||+++|+++++.++++|++|+|.
T Consensus 554 ~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~--~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~ 631 (877)
T COG0525 554 SLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLD--LLALSLADRWILSRLNETVKEVTEALDNYRFD 631 (877)
T ss_pred hccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccccc--ccccchHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 74 7899999999999999999999999999999988665543211 13336899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCC
Q psy15223 2276 MIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGE 2355 (2492)
Q Consensus 2276 ~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~ 2355 (2492)
.|.++|++|+|++||+||+|++|.++|.. ...+.+++.+|+++|+.+++||||||||+||||||.++.. +
T Consensus 632 ~a~~~ly~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-------~ 701 (877)
T COG0525 632 EAARALYEFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-------E 701 (877)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhcCc---HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC-------C
Confidence 99999999999999999999999999986 5566799999999999999999999999999999999763 6
Q ss_pred CeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhhcc
Q psy15223 2356 TIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 2435 (2492)
Q Consensus 2356 sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~vs 2435 (2492)
||+.+.||+..+...++..+..++.+. +++.++|++|+++++..+....+.+...++..+.++.....|..+++++
T Consensus 702 si~~~~~P~~~~~~~d~~a~~~~~~l~----~ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 777 (877)
T COG0525 702 SIHLASWPEVDEELIDEEAEKEFELLK----EIISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKGLANLE 777 (877)
T ss_pred eEEeccCCCcchhhccHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCceeEEEeccHhHHHHHHHHHHHHHHhcCcc
Confidence 999999999887777776766666654 5788899999999999988877766554555677787888999999999
Q ss_pred cEEEeec
Q psy15223 2436 SVSLFQI 2442 (2492)
Q Consensus 2436 ~v~i~~~ 2442 (2492)
++++...
T Consensus 778 ~i~~~~~ 784 (877)
T COG0525 778 ELEILSP 784 (877)
T ss_pred eeeeccc
Confidence 9998863
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-155 Score=1615.37 Aligned_cols=821 Identities=29% Similarity=0.517 Sum_probs=722.9
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
-+++++++|++||++|+++++|++..+.+.++++|+|++|||||||.|||||++|+|++|+++||+||+||+|+|+||||
T Consensus 9 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD 88 (975)
T PRK06039 9 SQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWD 88 (975)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcC
Confidence 35788999999999999999999765545678999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1648 CHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
|||||||.+|+|.+|. ++++++|+++|++|+.++++.|++||+|||+|+||+|+|.||||.|+++++|+|.+|
T Consensus 89 ~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l 168 (975)
T PRK06039 89 THGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQL 168 (975)
T ss_pred CCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 9999999999998774 478999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCccccccccc--ceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Eve--y~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~ 1798 (2492)
+++|||||+.+||+|||.|+|+|||+||+ |++..++++||+|++.+. .+.+++|||||||||||
T Consensus 169 ~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~--------------~~~~l~i~TTrP~Tl~~ 234 (975)
T PRK06039 169 YDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGE--------------ENEYLLAWTTTPWTLPS 234 (975)
T ss_pred HHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCC--------------CCCEEEEEECCcccccc
Confidence 99999999999999999999999999999 999999999999998531 24699999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEec
Q psy15223 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 1877 (2492)
Q Consensus 1799 ~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~ 1877 (2492)
|+||||||+++|++++.++ +.||+|+++++++++ +.+.+ .+++|++|+|++|.|||..+.. ..+.+||+++
T Consensus 235 n~avaV~P~~~Y~~~~~~~---~~yi~a~~~~~~~~~----~~~~~~~~~~G~~L~G~~~~~P~~~~~~-~~~~~pii~~ 306 (975)
T PRK06039 235 NLALAVHPDIDYVKVEGGG---EVYILAEALLEKVLK----EDYEVVETFKGSELEGLEYEPPFPYFAD-EKNAFRVVLA 306 (975)
T ss_pred ceEEEECCCCceEEEecCC---eEEEEhHHHHHHHhh----cccEEEeeecCccccCCEEECCcccccC-CcceeEEEec
Confidence 9999999999999998653 789999999999876 23444 9999999999999999962211 0157999999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeee
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 1957 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 1957 (2492)
+||++++|||+||+|||||++||+++++||| ++++++|++|+|++++|+|+|+++++|++.|++.|+++|.|++.++
T Consensus 307 ~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~ 383 (975)
T PRK06039 307 DFVTTEDGTGIVHIAPAFGEDDFEVGKKYGL---PVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAET 383 (975)
T ss_pred CccCCCCCccceeeCCCCChHHHHHHHHcCC---CccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeee
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchh-HHHHhhhCCCCcccccccCCC
Q psy15223 1958 FEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWG 2036 (2492)
Q Consensus 1958 ~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~-~~~~~l~~~~DW~ISRqr~WG 2036 (2492)
++|+||||||||+||++++++||||++++ +++++++++++++|+|++.++ ++.+||++++||||||||+||
T Consensus 384 ~~h~~p~c~R~g~pv~~~~~~qWFi~~~~--------~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG 455 (975)
T PRK06039 384 YEHSYPHCWRCDTPLIYYATESWFIRVTK--------IKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWG 455 (975)
T ss_pred ecCCCCEeCCCCCEEEEEecCeeeEecHH--------HHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccC
Confidence 99999999999999999999999999998 999999999999999999999 999999999999999999999
Q ss_pred ceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCc--------ccccccchhhhcCCCccCceecccccccccccCcchhh
Q psy15223 2037 VPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI--------EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2037 ~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~--------~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
||||+|+|++|+...+ +.++.++.+..|. ..|++... --+| .+..+.|++||||||||||++|++
T Consensus 456 ~PIPiw~~~~~g~~~v-----~~~~~el~~~~g~~~~~~~l~~~~~d~~~-~~~~-~~~~~~r~~dVlDvWFdSg~~p~a 528 (975)
T PRK06039 456 TPLPIWRCEDCGRIDV-----IGSIEELEELFGEDVEPIDLHRPYVDEVT-LPCP-DGGTMRRVPDVIDVWFDSGSMPYA 528 (975)
T ss_pred CcceEEEecCCCeEEE-----eccHHHHHHHhCCCcchhhhccccccccc-ccCC-CCcceEeccccccceeecCCccHH
Confidence 9999999999875421 1223333333332 13332110 0012 245799999999999999999999
Q ss_pred hccCC----ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2109 VIRGS----HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2109 ~~~~~----~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
.+... ..++.+||+|++++|+||+||||+++++.+.++++..||+++++||+|+|.+|+|||||+||+|+|.++++
T Consensus 529 ~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~ 608 (975)
T PRK06039 529 QLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD 608 (975)
T ss_pred HhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH
Confidence 88642 22467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhccC-CCCcccccHHH-HHHHHHHHHHHHHHHHHHH--hcCCCCCCCcccccccccchHHHHHHHHHHH
Q psy15223 2185 LFGAEILRLWVASTD-YSKDLSISNEI-LNRVVETYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITN 2260 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s~~-~~~d~~fs~~~-l~~~~~~~~kl~n~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~ 2260 (2492)
+||+|++|||+++.. .++|++|+++. ++.+.+.+++|||+++|+. .++.+|.+.........+..+|+|+++++++
T Consensus 609 ~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~ 688 (975)
T PRK06039 609 KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNS 688 (975)
T ss_pred HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHH
Confidence 999999999999754 68999999999 7777888999999999975 4454543321112223457899999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 2261 LQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340 (2492)
Q Consensus 2261 ~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEel 2340 (2492)
+++.++++|++|+|+.|++.+++|+ ++||+||++.+|+|+|.... +.++++++++|+++++.++++|+|||||+||||
T Consensus 689 li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei 766 (975)
T PRK06039 689 LVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPFIAEEI 766 (975)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999 89999999999999998643 345778999999999999999999999999999
Q ss_pred HHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeE-EEEEeChhhHH
Q psy15223 2341 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAE-IILKINKLDFE 2419 (2492)
Q Consensus 2341 w~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~-v~i~~~~~~~~ 2419 (2492)
|+.|+.. ...+|||++.||+.++.+.|+++++.|+.++ ++...+|++|++.+|+.+.+.. ++|..+.+..+
T Consensus 767 ~~~L~~~----~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~----~ii~~~r~~r~~~~i~~~~pl~~~~v~~~~~~~~ 838 (975)
T PRK06039 767 YQNLTRE----DAPESVHLADWPEVDESLIDEELEEAMDLVR----EIVSLGRSARKKAGIKVRQPLSKITVAEDEEVAE 838 (975)
T ss_pred HHhcccc----CCCCeeEecCCCCCccccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCccceEEEecCHHHHH
Confidence 9999752 1246999999999888777888877777665 4778889999999988877654 44444433556
Q ss_pred HHHHhHHHHHHhhhcccEE
Q psy15223 2420 ILNEFGEELKFFLLTSSVS 2438 (2492)
Q Consensus 2420 ~l~~~~~~L~~l~~vs~v~ 2438 (2492)
.++.+.+.|+++++|.+|.
T Consensus 839 ~~~~~~~~i~~~~nv~~v~ 857 (975)
T PRK06039 839 ALERYEDLIKDELNVKEVP 857 (975)
T ss_pred HHHHHHHHHHHHhCcccch
Confidence 6788888999999998883
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-154 Score=1597.73 Aligned_cols=801 Identities=29% Similarity=0.520 Sum_probs=700.8
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|+... .++++++|++++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 28 ~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~ 107 (975)
T PRK06039 28 DIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGK 107 (975)
T ss_pred CCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccc
Confidence 3454433 346789999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.+++++|+++|++|+.++++.|++||+|||+|+||+|+|.||||.|+++++|+|.+|+++|||||+.+||+|||.|
T Consensus 108 ~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~ 187 (975)
T PRK06039 108 KDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRC 187 (975)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccccc--ccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecC
Q psy15223 590 KSALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN 667 (2492)
Q Consensus 590 ~taLae~Eve--y~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~ 667 (2492)
+|+||++||+ |+++.++++||+|++.+. .+.+++||||||||||||+||||||+++|++++.++
T Consensus 188 ~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~--------------~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~ 253 (975)
T PRK06039 188 ETPLSNHEVAQGYKDVKDPSVYVKFKLKGE--------------ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGG 253 (975)
T ss_pred CCCccHHHHhhcccccCCceEEEEEEecCC--------------CCCEEEEEECCccccccceEEEECCCCceEEEecCC
Confidence 9999999999 999999999999998531 246999999999999999999999999999999655
Q ss_pred CCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCH
Q psy15223 668 DPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGI 747 (2492)
Q Consensus 668 ~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~ 747 (2492)
+.||+|+++++++.+ ....++.+++|++|+|++|.|||..... ..+.+||++++||++++|||+||+|||||+
T Consensus 254 ---~~yi~a~~~~~~~~~---~~~~~~~~~~G~~L~G~~~~~P~~~~~~-~~~~~pii~~~~V~~~~GTG~V~~aPahg~ 326 (975)
T PRK06039 254 ---EVYILAEALLEKVLK---EDYEVVETFKGSELEGLEYEPPFPYFAD-EKNAFRVVLADFVTTEDGTGIVHIAPAFGE 326 (975)
T ss_pred ---eEEEEhHHHHHHHhh---cccEEEeeecCccccCCEEECCcccccC-CcceeEEEecCccCCCCCccceeeCCCCCh
Confidence 789999999999876 1233459999999999999999962111 015799999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeec
Q psy15223 748 EDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTT 827 (2492)
Q Consensus 748 ~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t 827 (2492)
+||++|++||| ++++|||++|+|++++|+|+|+++++|++.|++.|++.|.|++.+++.|+||||||||+||+++++
T Consensus 327 ~D~~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~ 403 (975)
T PRK06039 327 DDFEVGKKYGL---PVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYAT 403 (975)
T ss_pred HHHHHHHHcCC---CccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEec
Confidence 99999999999 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhH-HHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHH
Q psy15223 828 LQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE 906 (2492)
Q Consensus 828 ~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~-rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~ 906 (2492)
+||||++++ +|+++++++++++|+|++.++ ++.+||++++||||||||+||||||+|+|++||+..
T Consensus 404 ~qWFi~~~~--------~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~----- 470 (975)
T PRK06039 404 ESWFIRVTK--------IKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRID----- 470 (975)
T ss_pred CeeeEecHH--------HHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEE-----
Confidence 999999998 999999999999999999999 999999999999999999999999999999998653
Q ss_pred HHHHHHHHHhhcCCc--------cccccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeee
Q psy15223 907 LIELIAKKIELNGIE--------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADL 974 (2492)
Q Consensus 907 ~i~~~~~~~~~~g~~--------~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl 974 (2492)
++.++.++.+..|.+ .|++... --++ .+..+.|++||||||||||++|++.++++. .++.+||+|+
T Consensus 471 v~~~~~el~~~~g~~~~~~~l~~~~~d~~~-~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~ 548 (975)
T PRK06039 471 VIGSIEELEELFGEDVEPIDLHRPYVDEVT-LPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADF 548 (975)
T ss_pred EeccHHHHHHHhCCCcchhhhccccccccc-ccCC-CCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceE
Confidence 122334444444431 2222110 0011 245799999999999999999999887543 2367999999
Q ss_pred eecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccC-cccc
Q psy15223 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD-YSKD 1053 (2492)
Q Consensus 975 ~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~-~~~d 1053 (2492)
+++|+||+||||+++++.+.++++..||++|++|||++|.+|+|||||+||+|+|.++|++||+|++|||+++.. .++|
T Consensus 549 ~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D 628 (975)
T PRK06039 549 IVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWED 628 (975)
T ss_pred EEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999765 5899
Q ss_pred cccCHHH-HHHHHHHHHHHHHHHHHHh--hcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 1054 LSISNEI-LNRVVETYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130 (2492)
Q Consensus 1054 ~~fs~~~-l~~~~~~~~kl~n~~rf~l--~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~ 1130 (2492)
++||++. ++.+.+.+++|||+++|++ +++.+|++.........+.+.|+|++++++++++++.++|++|+|++|++.
T Consensus 629 ~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~ 708 (975)
T PRK06039 629 LRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARA 708 (975)
T ss_pred ceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999 7777788999999999986 455555433222223446789999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeec
Q psy15223 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQ 1210 (2492)
Q Consensus 1131 l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~ 1210 (2492)
|++|+ ++||++|++.+|+|+|+... +..+++++++|+++|+.++++|+|||||+|||||+.|+.. ...+|||++
T Consensus 709 l~~f~-~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~----~~~~sv~~~ 782 (975)
T PRK06039 709 IRDFV-DDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE----DAPESVHLA 782 (975)
T ss_pred HHHHH-HHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc----CCCCeeEec
Confidence 99999 89999999999999998743 4557789999999999999999999999999999999742 124799999
Q ss_pred cCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcce-EEEEEeCchhHHHHHHhHHHHHHhhhccce
Q psy15223 1211 LHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA-EIILKINKLDFEILNEFGEELKFFLLTSSV 1287 (2492)
Q Consensus 1211 ~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a-~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v 1287 (2492)
.||+.++...+..+++.++.++++. ..++.+|++.+++..... .+.+..+.+..+.++.+.+.|..+++|.+|
T Consensus 783 ~~P~~~~~~~d~~le~~~~~~~~ii----~~~r~~r~~~~i~~~~pl~~~~v~~~~~~~~~~~~~~~~i~~~~nv~~v 856 (975)
T PRK06039 783 DWPEVDESLIDEELEEAMDLVREIV----SLGRSARKKAGIKVRQPLSKITVAEDEEVAEALERYEDLIKDELNVKEV 856 (975)
T ss_pred CCCCCccccCCHHHHHHHHHHHHHH----HHHHHHHHHcCCCCCCccceEEEecCHHHHHHHHHHHHHHHHHhCcccc
Confidence 9999887666777888888777554 455568888877755443 344444433556778888889999998877
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-152 Score=1472.68 Aligned_cols=738 Identities=27% Similarity=0.483 Sum_probs=673.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh---Cc---CCCHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY---GK---NLSPIEIQNK 523 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~---~~---~~~~~e~~~~ 523 (2492)
++|+|..||||++|.||||||+|.++.|+++||+||+||+|+|+|||||||+|+|.+||+++ |. ++++++|+++
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~ 112 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKK 112 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999999998 54 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
|++|.+++.+.+++|++|||+|+||+++|+||||.+.+.++.+|.+||++|||||+.++|||||.|+|||||.||||++.
T Consensus 113 ~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~ 192 (877)
T COG0525 113 CWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEV 192 (877)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.+..+|++|++.+. +.+|+|+|||||||+|++||+|||+++
T Consensus 193 ~g~L~~i~y~l~~~---------------~~~i~VATTRPEtmlgdtAVaVhP~De------------------------ 233 (877)
T COG0525 193 EGKLYYIKYPLADG---------------DGYLVVATTRPETLLGDTAVAVHPDDE------------------------ 233 (877)
T ss_pred eeeEEEEEEecCCC---------------CceEEEEecCccccccceEEEECCCCh------------------------
Confidence 99999999999763 349999999999999999999999964
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
|| ++|+|+++.+|+. ++++|||.++||++++|||+|+++|||+++||+++++|+| |+
T Consensus 234 --RY------------k~LvGk~v~lPl~------~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~L---p~ 290 (877)
T COG0525 234 --RY------------KHLVGKEVILPLV------GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNL---PL 290 (877)
T ss_pred --hh------------HhhcCCEEecCCC------CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCC---Cc
Confidence 55 5899999999999 8999999999999999999999999999999999999999 88
Q ss_pred ccccCCCCcccccCC-CCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 764 INPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~-~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~ 842 (2492)
++.+|++|+++++++ +|+||++++||++|++.|++.|.|++.+++.|++|||||||+||++++++|||+++..
T Consensus 291 i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~------ 364 (877)
T COG0525 291 INIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLE------ 364 (877)
T ss_pred eEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHh------
Confidence 899999999998885 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC
Q psy15223 843 KSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI 920 (2492)
Q Consensus 843 ~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 920 (2492)
++++++++.+ +++|+|+..++++.+|+++++||||||||+||||||+|||++||...+..... .
T Consensus 365 --la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~------------~ 430 (877)
T COG0525 365 --LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEP------------E 430 (877)
T ss_pred --hHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCccc------------c
Confidence 9999999999 89999999999999999999999999999999999999999999876322100 0
Q ss_pred ccccccCchhhcCCCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccchhhHHHHHHHHHHhc
Q psy15223 921 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 921 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
+.+. ... +....+++++|||||||+||+++++++++..+ ++.+||.|+.++|.||+|+|..+|++.+..+.
T Consensus 431 ~~~~----~~~--~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~ 504 (877)
T COG0525 431 DPAA----AEK--CPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLT 504 (877)
T ss_pred chhh----hcc--CchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhc
Confidence 0000 000 11156889999999999999999999988752 25677999999999999999999999999999
Q ss_pred CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHH
Q psy15223 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLR 1076 (2492)
Q Consensus 998 ~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r 1076 (2492)
++.||+.|++||+|+|++|+|||||+||||+|.++|++||||+||||+++. ..++|++|+.+.++...++.+|+||..|
T Consensus 505 ~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~R 584 (877)
T COG0525 505 GEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATR 584 (877)
T ss_pred CCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999974 7899999999999999999999999999
Q ss_pred HHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC
Q psy15223 1077 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK 1156 (2492)
Q Consensus 1077 f~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~ 1156 (2492)
|+++|+.+..+..... ...++.||||+++|+++++.++++|++|+|..|.++|++|+|++||++|++++|.++|.+
T Consensus 585 fv~~~~~~~~~~~~~~--~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~-- 660 (877)
T COG0525 585 FVLMNLDDLGPDDLDL--LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG-- 660 (877)
T ss_pred HHHhcccccCcccccc--cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--
Confidence 9999987655432111 233789999999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHH
Q psy15223 1157 NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRS 1236 (2492)
Q Consensus 1157 ~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~ 1236 (2492)
...+++++.+|+.+|+.+++||||||||+|||||+.++.. +||+++.||...+...+++.+..++.+.+
T Consensus 661 -~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-------~si~~~~~P~~~~~~~d~~a~~~~~~l~~--- 729 (877)
T COG0525 661 -EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-------ESIHLASWPEVDEELIDEEAEKEFELLKE--- 729 (877)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC-------CeEEeccCCCcchhhccHHHHHHHHHHHH---
Confidence 5566799999999999999999999999999999999763 69999999997766666666677777764
Q ss_pred HHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccceEEee
Q psy15223 1237 KVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSVSLFQ 1291 (2492)
Q Consensus 1237 ~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~ 1291 (2492)
+..+++++|++.++..+....+.+....+..+.++.....|..+++++++++..
T Consensus 730 -ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~ 783 (877)
T COG0525 730 -IISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKGLANLEELEILS 783 (877)
T ss_pred -HHHHHHHHHHHcCCCCCCceeEEEeccHhHHHHHHHHHHHHHHhcCcceeeecc
Confidence 455667899999998888877776554555677788888999999999998875
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-151 Score=1577.05 Aligned_cols=799 Identities=41% Similarity=0.732 Sum_probs=703.7
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|++++.++|++||++|+++++|++..+.+.++++|++++|||||||.|||||++|++++||++||+||+||+|+|+|||
T Consensus 3 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~ 82 (861)
T TIGR00392 3 PMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGW 82 (861)
T ss_pred CCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 46789999999999999999999976544567889999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHH
Q psy15223 1647 DCHGMPIEIQIEKLYGKN-------LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~~-------~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~ 1719 (2492)
||||||||.+|+|.+|.. .++++|+++|++|+.++++.|++||++||+|+||+|+|.|+||.|+++++|+|.+
T Consensus 83 D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~ 162 (861)
T TIGR00392 83 DTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKE 162 (861)
T ss_pred CCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHH
Confidence 999999999999987742 3457899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeCcccccCCCCCccccccccccee----eecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcch
Q psy15223 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK----KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795 (2492)
Q Consensus 1720 L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~----~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~T 1795 (2492)
|+++|||||+.+||+|||.|+|+|||+||+|++ +.++++||+|++.+..... .. .+..+++||||||||
T Consensus 163 l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~----~~---~~~~~l~i~TTrP~T 235 (861)
T TIGR00392 163 AHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTY----LK---VKLSSLLIWTTTPWT 235 (861)
T ss_pred HHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccc----cc---cccceEEEEECCccc
Confidence 999999999999999999999999999999987 8899999999986432100 00 011289999999999
Q ss_pred hccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCcee---
Q psy15223 1796 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS--- 1872 (2492)
Q Consensus 1796 l~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~--- 1872 (2492)
||||+||||||+++|++++.+++ ++.||+++++++++.+..+.+...+.+++|.+|+|++|.||++ ++++
T Consensus 236 l~~~~ai~v~p~~~Y~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~~~~ 308 (861)
T TIGR00392 236 LPSNLAIAVHPDFEYALVQDNTK-VEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY------DFVSQLK 308 (861)
T ss_pred ccCCeeeeeCCCCceEEEEcCCC-CcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC------ccccccc
Confidence 99999999999999999997532 3689999999999987766442234999999999999999998 6677
Q ss_pred ---cE-EecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-------CCCCccHHhhhHH
Q psy15223 1873 ---PI-YLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-------LFGGMSIWKASKL 1941 (2492)
Q Consensus 1873 ---pi-~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-------~~~G~~v~~a~~~ 1941 (2492)
|+ ++++||++++|||+||+|||||++||+++++||| ++++++|++|+|+.+.+ .|.|+++++|++.
T Consensus 309 ~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ 385 (861)
T TIGR00392 309 EGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGL---EVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKI 385 (861)
T ss_pred cCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCC---CcccccCCCceECCcCccccccccccCCccHHHhHHH
Confidence 86 5559999999999999999999999999999999 78999999999987665 4899999999999
Q ss_pred HHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhh
Q psy15223 1942 ICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMI 2021 (2492)
Q Consensus 1942 i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l 2021 (2492)
|++.|+++|.|++.+++.|+||||||||+||++++++||||++++ +++++++++++++|+|++.++++.+||
T Consensus 386 ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~l 457 (861)
T TIGR00392 386 IIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKD--------IKDQMLEQIKKVNWVPEWGEGRFGNWL 457 (861)
T ss_pred HHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHH--------HHHHHHHHhCCcEEECchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 999999999999999999999999999
Q ss_pred hCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC------CccCceecccc
Q psy15223 2022 LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD------DAVNYKKSNDT 2095 (2492)
Q Consensus 2022 ~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~------~~~~~~~~~dv 2095 (2492)
++++||||||||+||||||+|+|++|+.. ....+++++.+.+...|.+.|+.....++++. ++..+.|++||
T Consensus 458 ~~l~DW~ISRqr~WG~pIP~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dv 535 (861)
T TIGR00392 458 ENRPDWCISRQRYWGIPIPIWYCEDTGEP--IVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDV 535 (861)
T ss_pred hCCCcceeeccccCCCeeeEEEECCCCCC--cCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEcccc
Confidence 99999999999999999999999999875 45566777777777788999887555544431 23679999999
Q ss_pred cccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeec
Q psy15223 2096 LDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKS 2172 (2492)
Q Consensus 2096 lDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS 2172 (2492)
||||||||++|++.+.... +++.|||+|+|++|+||+||||++++++++++.+..||+++++||||++.+|+|||||
T Consensus 536 lDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKS 615 (861)
T TIGR00392 536 LDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKS 615 (861)
T ss_pred ccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCC
Confidence 9999999999998886432 2467899999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcchhhhccChhHHHHHHhccCCCCcccccHHHHHHHHH-HHHHHHHHHHHHH--hcCCCCCCCcccccccccch
Q psy15223 2173 KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE-TYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVE 2249 (2492)
Q Consensus 2173 ~GNvi~p~~ii~~yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~-~~~kl~n~~r~~~--~~~~~~~~~~~~~~~~~~~~ 2249 (2492)
+||+|+|.++|++||+|++|||+++.++.+|++|+++.++.+.+ ..++++|+++|+. +++.++.+.....+...+..
T Consensus 616 kGNvI~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 695 (861)
T TIGR00392 616 LGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPE 695 (861)
T ss_pred CCCCCCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCH
Confidence 99999999999999999999999977899999999999988766 6778899999998 77776664322222334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2250 ~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
.|+|++++++++++++.++|++|+|++|++.+++|++.++||+||+.+|+++|+...++..+ +++++++.+++.++++|
T Consensus 696 ~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL 774 (861)
T TIGR00392 696 EDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLL 774 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988899999999999999876554444 88999999999999999
Q ss_pred hccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15223 2330 SPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGII 2401 (2492)
Q Consensus 2330 aPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i 2401 (2492)
+|||||+|||||+.|+.. ...+||+.++||..++.+.++.++..++.+++ +.+.++++|++.++
T Consensus 775 ~P~~P~~aeeiw~~L~~~----~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~----~i~~ir~ir~~~~~ 838 (861)
T TIGR00392 775 APFLPHTAEEIYQNLPGG----EEEESVHLNLWPEVDEEFIDEALEANMAIVRE----IVEAFLALRDAANK 838 (861)
T ss_pred HHhhhhhHHHHHHhcccc----CCCCceeccCCCCCchhhcCHHHHHHHHHHHH----HHHHHHHHHHHhCh
Confidence 999999999999999753 12469999999998877667666655444332 33444555554443
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-151 Score=1569.38 Aligned_cols=792 Identities=41% Similarity=0.717 Sum_probs=702.1
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcC--
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKN-- 514 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~-- 514 (2492)
.+|+... .+.++++|++|+|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|+|.+|..
T Consensus 23 ~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~ 102 (861)
T TIGR00392 23 DIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGK 102 (861)
T ss_pred CchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccc
Confidence 3454433 2457889999999999999999999999999999999999999999999999999999999999987742
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 515 -----LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 515 -----~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
.++++|+++|++|+.++++.|++||+|||+++||+|+|.||||.|+++++|+|.+|+++|||||+.+||+|||.|
T Consensus 103 ~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~ 182 (861)
T TIGR00392 103 KEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRC 182 (861)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCc
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccccccc----eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEe
Q psy15223 590 KSALAEAEIEYKK----KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHI 665 (2492)
Q Consensus 590 ~taLae~Evey~~----~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~ 665 (2492)
+|+|||+||+|++ +.++++||+|++.+..... . ..+..+++||||||||||||+||||||+++|++++.
T Consensus 183 ~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~----~---~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~ 255 (861)
T TIGR00392 183 RTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTY----L---KVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQD 255 (861)
T ss_pred CCcccHHHHhcccccccccCceEEEEEEecCCcccc----c---ccccceEEEEECCcccccCCeeeeeCCCCceEEEEc
Confidence 9999999999987 8999999999996532100 0 011128999999999999999999999999999997
Q ss_pred cCCCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCcee------cEE-ecCCcccCCCCcc
Q psy15223 666 KNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS------PIY-LGDYITVDSGTGI 738 (2492)
Q Consensus 666 ~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~------pii-~~~~V~~~~GTG~ 738 (2492)
++ .++.||+|+++++++.+..+.+...+.+++|++|.|++|.||++ ++++ |++ .++||++++|||+
T Consensus 256 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~~~~~~~p~v~~~~~V~~~~GTG~ 328 (861)
T TIGR00392 256 NT-KVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY------DFVSQLKEGAPVVIGGDHVTTEDGTGI 328 (861)
T ss_pred CC-CCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC------ccccccccCCcEEeCCCCCCCCCCCce
Confidence 53 23689999999999988876554455999999999999999998 6677 875 5599999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCCCCCcccccCCCCcccccCC-------CCCCcchhhchHHHHHHHHhcCCeeeeeeeccc
Q psy15223 739 VHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-------LFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 811 (2492)
Q Consensus 739 Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-------~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 811 (2492)
||+|||||++||++|++||| +++++||++|+|+.+.+ .|.|+++++|++.|++.|++.|.|++.+++.|+
T Consensus 329 V~~~Pah~~~D~~~~~~~~l---~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~ 405 (861)
T TIGR00392 329 VHTAPGHGEEDYEIGKKYGL---EVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHS 405 (861)
T ss_pred eEcCCCCCHHHHHHHHHcCC---CcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecC
Confidence 99999999999999999999 78899999999987765 488999999999999999999999999999999
Q ss_pred cccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeE
Q psy15223 812 YMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF 891 (2492)
Q Consensus 812 yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~ 891 (2492)
||||||||+||++++++||||++++ +++++++++++++|+|+++++++.+||++++||||||||+||||||+
T Consensus 406 ~p~~~R~~~~v~~~~~~QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~ 477 (861)
T TIGR00392 406 YPHCWRTKTPVIYRATEQWFIKTKD--------IKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPI 477 (861)
T ss_pred CCccCCCCCEEEEecCccccEEcHH--------HHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeE
Confidence 9999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC------CccCceecCCccccccccccccchhcccCc-
Q psy15223 892 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD------DAVNYKKSNDTLDVWFDSGITHQTVIRGSH- 964 (2492)
Q Consensus 892 ~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~------~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~- 964 (2492)
|+|++||+. +...+++++.+.+...|.+.|+.....++++. ++..+.|++||||||||||++|+++++.+.
T Consensus 478 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~ 555 (861)
T TIGR00392 478 WYCEDTGEP--IVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFE 555 (861)
T ss_pred EEECCCCCC--cCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCC
Confidence 999999976 46677888888788889999987665554431 236799999999999999999998887543
Q ss_pred --cccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHH
Q psy15223 965 --KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042 (2492)
Q Consensus 965 --~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lR 1042 (2492)
++++|||+|+|++|+||+||||++++++++++.+..||+++++||||+|.+|+|||||+||+|+|.++|++||+|++|
T Consensus 556 ~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR 635 (861)
T TIGR00392 556 NEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILR 635 (861)
T ss_pred cchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHH
Confidence 246899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcccccccCHHHHHHHHH-HHHHHHHHHHHHh--hcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy15223 1043 LWVASTDYSKDLSISNEILNRVVE-TYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 1119 (2492)
Q Consensus 1043 l~l~s~~~~~d~~fs~~~l~~~~~-~~~kl~n~~rf~l--~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~ 1119 (2492)
||+++.++.+|++|+++.++...+ ..++++|+++|++ +++.+|.+....++...+...|+|++++++++++++.++|
T Consensus 636 ~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~ 715 (861)
T TIGR00392 636 LYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL 715 (861)
T ss_pred HHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999988889999999999988766 6677889999998 8887776532223334467889999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCc
Q psy15223 1120 RMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNF 1199 (2492)
Q Consensus 1120 ~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~ 1199 (2492)
++|+|++|++.+++|++.+||++|++.+|+|+|+...++..| +++++|+.+++.++++|+|||||+|||||+.|+..
T Consensus 716 e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~-- 792 (861)
T TIGR00392 716 EKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG-- 792 (861)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc--
Confidence 999999999999999988899999999999999877665444 89999999999999999999999999999999753
Q ss_pred cccCCCceeeccCCCCcccCCchHHH-------HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEE
Q psy15223 1200 YIESGETIFTQLHYKLPKVYNSKKLL-------YKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIIL 1261 (2492)
Q Consensus 1200 ~~~~~~SV~~~~wp~~~~~~~~~~~~-------~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i 1261 (2492)
...+||+++.||..++...+..++ +.++.++++|++++..++..++++.|+.++++.|.+
T Consensus 793 --~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~i~~~~~~~~~~ 859 (861)
T TIGR00392 793 --EEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAVLKA 859 (861)
T ss_pred --CCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcCEEcCCchhheEe
Confidence 124699999999977654455444 446667777777777788888877788888877665
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-147 Score=1527.08 Aligned_cols=791 Identities=22% Similarity=0.363 Sum_probs=682.5
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+++.++|++||++|+++++|++.. +.++++|+|++||||+||.||||||+|++++||++||+||+||+|+|+|||||
T Consensus 99 ~yd~~~iE~~w~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 99 QYSPSAVEKSWYAWWEKSGYFGADA--KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCc--cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 4788899999999999999998743 45678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHh----cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLY----GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~----~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||+|.+++|.+ |. ++++++|++.|++|+.++++.|++||++||+|+||+++|+||||.|+++++|+|.+||
T Consensus 177 ~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~ 256 (1066)
T PLN02381 177 AGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLY 256 (1066)
T ss_pred CcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHH
Confidence 9999999999876 32 5789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchh-hH----hhhccCCCCCCccEEEEeecCcchh
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEK-IK----SIFNLKNLPSGKGYIVIWTSTPWTI 1796 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~-~~----~~~~~~~~~~~~~~l~i~TT~P~Tl 1796 (2492)
++|||||+.+||||||.|+|+|||+||+|++..++++| +|+...... +. ..+.+. +++.+++|||||||||
T Consensus 257 ~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~-~~~~~~~~~~~g~~~~~~Y~l~---~~~~~i~vATtRpEti 332 (1066)
T PLN02381 257 KEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLL-KVPGYDKPVEFGVLTSFAYPLE---GGLGEIVVATTRIETM 332 (1066)
T ss_pred HCCCEEeccccccCCCCCCCCccHHHhhhhccccchhh-cccCCCcceeeEEEEEEEEEec---CCCCEEEEecCCHHHH
Confidence 99999999999999999999999999999998888766 554321110 00 001111 1234799999999999
Q ss_pred ccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEe
Q psy15223 1797 PANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876 (2492)
Q Consensus 1797 ~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~ 1876 (2492)
+|++||+|||+++ + +++|+|++|.|||+ ++.+|||.
T Consensus 333 ~g~~avaV~P~d~--------------------------r------------y~~L~G~~~~~Pl~------~~~ipIi~ 368 (1066)
T PLN02381 333 LGDTAIAIHPDDE--------------------------R------------YKHLHGKFAVHPFN------GRKLPIIC 368 (1066)
T ss_pred hcccceeeCCCCc--------------------------c------------hhhhCCCEEECCCC------CCEEEEEE
Confidence 9999999999953 1 23789999999998 89999998
Q ss_pred c-CccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCC-CCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1877 G-DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLP-LFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1877 ~-~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~-~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
+ +||++++|||+||++||||++||+++++|+| ++++++|++|+|+++++ .|+|+++++||+.|++.|++.|+|++
T Consensus 369 d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L---~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~ 445 (1066)
T PLN02381 369 DAILVDPNFGTGAVKITPAHDPNDFEVGKRHNL---EFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRG 445 (1066)
T ss_pred CCccccccCCCCcEEecCCCChHHHHHHHHcCC---CeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEec
Confidence 6 5999999999999999999999999999999 99999999999998864 89999999999999999999999999
Q ss_pred eeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhh-----hcceEecccchhHHHHhhhCCCCccc
Q psy15223 1955 IEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAI-----NKIKFFPSWGKDRLKSMILNRPDWTI 2029 (2492)
Q Consensus 1955 ~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~-----~~v~~~P~~~~~~~~~~l~~~~DW~I 2029 (2492)
.+.++|+||||||||+||++++++||||++++ +++++++++ ++|+|+|++.++++.+||++++||||
T Consensus 446 ~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~--------l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcI 517 (1066)
T PLN02381 446 AKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSS--------MAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCI 517 (1066)
T ss_pred ceeeecCCCeeCCCCceEEEeecccceEEchH--------HHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCcccee
Confidence 99999999999999999999999999999998 999999998 78999999999999999999999999
Q ss_pred ccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCc--cccccc-chhhhcC-------CCccCceecccccccc
Q psy15223 2030 SRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI--EIWQNL-DIKEFLG-------DDAVNYKKSNDTLDVW 2099 (2492)
Q Consensus 2030 SRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~--~~w~~~-~~~~~~~-------~~~~~~~~~~dvlDvW 2099 (2492)
|||||||||||+|+|..++.. +...|+ +.|+.. +..+.++ +....+.+++||||||
T Consensus 518 SRQr~WG~pIPiw~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtW 583 (1066)
T PLN02381 518 SRQLWWGHRIPAWYVTLEDDQ--------------LKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTW 583 (1066)
T ss_pred eeecccCCccceEEeccChhh--------------cccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEE
Confidence 999999999999998621110 011222 345422 2122221 1112489999999999
Q ss_pred cccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCc
Q psy15223 2100 FDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 2176 (2492)
Q Consensus 2100 fdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv 2176 (2492)
||||++|+++++... +++.+||+|++++|.||+||||++|++.++.+++++||++|++||||+|.+|+|||||+|||
T Consensus 584 F~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNv 663 (1066)
T PLN02381 584 FSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNV 663 (1066)
T ss_pred EeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCC
Confidence 999999999987532 23568999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhh-------------------------------------ccChhHHHHHHhcc-CCCCcccccHHHHHHHHHHH
Q psy15223 2177 IKPQKLCN-------------------------------------LFGAEILRLWVAST-DYSKDLSISNEILNRVVETY 2218 (2492)
Q Consensus 2177 i~p~~ii~-------------------------------------~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~ 2218 (2492)
|+|.++|+ +||||+||||+++. ..++|++|+.+.+....+++
T Consensus 664 IdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~ 743 (1066)
T PLN02381 664 IDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWC 743 (1066)
T ss_pred CCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHH
Confidence 99999999 79999999999974 56789999999999899999
Q ss_pred HHHHHHHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhh
Q psy15223 2219 RRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 2297 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~ 2297 (2492)
++|||++||+++++.+ +.+.. ..+...+..+|+||+++|+.+++.++++|++|+|+.|++.++.|++++|||+||+.+
T Consensus 744 nKlwNa~rf~~~~~~~~~~~~~-~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~ 822 (1066)
T PLN02381 744 NKLWNAVRFAMSKLGDDYTPPA-TLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAI 822 (1066)
T ss_pred HHHHHHHHHHHhhcccccCccc-ccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 9999999999887753 44321 112234567999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccC-ChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHH
Q psy15223 2298 KDRLYTTKK-NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLY 2376 (2492)
Q Consensus 2298 K~~l~~~~~-~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~ 2376 (2492)
|+++|+... ++.++++++.+|++++..+++||+|||||+|||||+.|+... +....+||+++.||+.++.+.|+++++
T Consensus 823 K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~-~~~~~~SI~~~~~P~~~~~~~d~~le~ 901 (1066)
T PLN02381 823 KPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPK-DHTRKDSIMISEYPSAVEAWTNEKVEY 901 (1066)
T ss_pred HHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhc-cCCCCCeeEeCCCCCCCchhCCHHHHH
Confidence 999997543 245677899999999999999999999999999999997420 001236999999999888777877877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCCCceeEEEEE-eChhhHHHHHHhHHHHHHhhhcccEEEe
Q psy15223 2377 KYMILKKIRSKVMQKLEKIRSTG-IIGSSLQAEIILK-INKLDFEILNEFGEELKFFLLTSSVSLF 2440 (2492)
Q Consensus 2377 ~~~~~~~~r~~v~~~i~~~R~~~-~i~~~~~~~v~i~-~~~~~~~~l~~~~~~L~~l~~vs~v~i~ 2440 (2492)
.++.+. .+.+.+|++|++. .+..+....+.+. .+....+.++.+...|..++++++|++.
T Consensus 902 ~~~~l~----~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~ 963 (1066)
T PLN02381 902 EMDLVL----STVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSSLKVL 963 (1066)
T ss_pred HHHHHH----HHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCeeeee
Confidence 777665 4778889999988 5655544444433 3445567788888899999999999885
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-146 Score=1531.45 Aligned_cols=792 Identities=23% Similarity=0.369 Sum_probs=688.8
Q ss_pred hccccCCCCchhHHHhhhcccchhcc--cccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIR--KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPG 1645 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~--~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G 1645 (2492)
-.+++.++|++||++|+++++|++.. ..+.++++|+|++|||||||.||||||+|++++||++||+||+||+|+|+||
T Consensus 26 ~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G 105 (995)
T PTZ00419 26 ASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPG 105 (995)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 35788999999999999999998742 1245678999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHH
Q psy15223 1646 YDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFG 1718 (2492)
Q Consensus 1646 ~D~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~ 1718 (2492)
|||||||+|.++|+.++. ++++++|++.|++|+.++++.|++||++||+++||+|+|+||||.|+++++|+|.
T Consensus 106 ~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~ 185 (995)
T PTZ00419 106 TDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFV 185 (995)
T ss_pred CCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987632 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCch---hh--HhhhccCCCCCCc-cEEEEeecC
Q psy15223 1719 IIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPE---KI--KSIFNLKNLPSGK-GYIVIWTST 1792 (2492)
Q Consensus 1719 ~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~---~~--~~~~~~~~~~~~~-~~l~i~TT~ 1792 (2492)
+|+++|||||+.+||+|||.|+|+|||+||+|++..++++ ++|+..... .. .-+|.+. +.+ .+++|||||
T Consensus 186 ~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~-~~~~~~~~~~~~g~l~~i~f~l~---~~~~~~l~vaTTr 261 (995)
T PTZ00419 186 RLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTK-ITIPGYDKKVEVGVLWHFAYPLE---DSGQEEIVVATTR 261 (995)
T ss_pred HHHHCCCEEecceeeecCCCCCCCCchhhcccccccccce-eeccccccccccceeEEEEEeec---CCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999887775 444432110 00 0001111 122 399999999
Q ss_pred cchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCC-CccccCCCce
Q psy15223 1793 PWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPL-SNIDINYNRL 1871 (2492)
Q Consensus 1793 P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl-~~~~~~~~~~ 1871 (2492)
||||+||+||||||+++ +|. +|+|++|.||+ + ++.
T Consensus 262 PeTl~g~~avav~P~d~--------------------------~y~------------~l~G~~~~~Pl~~------~~~ 297 (995)
T PTZ00419 262 IETMLGDVAVAVHPKDE--------------------------RYK------------KLHGKELIHPFIP------DRK 297 (995)
T ss_pred cchhhhCeEEEECCCCc--------------------------HHH------------HhcCCEEECCccC------CCE
Confidence 99999999999999963 121 68999999999 7 889
Q ss_pred ecEEecC-ccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcC
Q psy15223 1872 SPIYLGD-YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSK 1950 (2492)
Q Consensus 1872 ~pi~~~~-~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g 1950 (2492)
+||++++ ||++++|||+||++||||++||+++++||| ++++++|++|+|++++|.|.|+.+++||+.|++.|+++|
T Consensus 298 ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g 374 (995)
T PTZ00419 298 IPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNL---PFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMG 374 (995)
T ss_pred EEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCC---CeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcC
Confidence 9999999 999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcc
Q psy15223 1951 TLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWT 2028 (2492)
Q Consensus 1951 ~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ 2028 (2492)
.+++.+.+.|+||||||||+||++++++|||+++++ |+++++++++ +++|+|+..++++.+||++++|||
T Consensus 375 ~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~--------~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWc 446 (995)
T PTZ00419 375 LLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKD--------MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWC 446 (995)
T ss_pred CEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHH--------HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccce
Confidence 999999999999999999999999999999999998 9999999997 799999999999999999999999
Q ss_pred cccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccccc-chhhhc---------CCCccCceeccccccc
Q psy15223 2029 ISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL-DIKEFL---------GDDAVNYKKSNDTLDV 2098 (2492)
Q Consensus 2029 ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~-~~~~~~---------~~~~~~~~~~~dvlDv 2098 (2492)
|||||+||||||+|+|++|+.... ..+.+.|+-. ...+.+ +.++..+.|++|||||
T Consensus 447 ISRQr~WG~pIP~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDt 512 (995)
T PTZ00419 447 ISRQLWWGHRIPAYRVISKGPETD--------------PSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDT 512 (995)
T ss_pred eeeecccCceeeEEEeCCCCcccc--------------CCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEE
Confidence 999999999999999999874310 1112223211 111111 1123468999999999
Q ss_pred ccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCC
Q psy15223 2099 WFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN 2175 (2492)
Q Consensus 2099 WfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN 2175 (2492)
|||||++|+++++... +++++||+|++++|+||+|+||++|++.+..+.++.||++|++||+|+|.+|+|||||+||
T Consensus 513 WFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGN 592 (995)
T PTZ00419 513 WFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGN 592 (995)
T ss_pred EEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCC
Confidence 9999999999886532 2366899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhh-------------------------------------ccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH
Q psy15223 2176 IIKPQKLCN-------------------------------------LFGAEILRLWVAS-TDYSKDLSISNEILNRVVET 2217 (2492)
Q Consensus 2176 vi~p~~ii~-------------------------------------~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~ 2217 (2492)
||+|.++|+ +||||+||||+++ ++.++|++|+.+.+....++
T Consensus 593 vIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f 672 (995)
T PTZ00419 593 VIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHF 672 (995)
T ss_pred cCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHH
Confidence 999999999 8999999999996 56789999999999988899
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccc-----ccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhh
Q psy15223 2218 YRRIRNTLRFLLANTSDFNPNINI-----IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 2292 (2492)
Q Consensus 2218 ~~kl~n~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~ 2292 (2492)
+++|||+++|+++++.++.+.... .+...+..+|+||+++++++++.++++|++|+|+.|++.+++|+++++||+
T Consensus 673 ~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~ 752 (995)
T PTZ00419 673 CNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDV 752 (995)
T ss_pred HHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHH
Confidence 999999999999887765332111 112345678999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCH
Q psy15223 2293 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSK 2372 (2492)
Q Consensus 2293 Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~ 2372 (2492)
||+.+|+|++.. .++..+++++++|+++++.+++||+|||||+|||||+.|+... ...+||++++||..++.+.++
T Consensus 753 Yie~~K~~l~~~-~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~---~~~~si~~~~~P~~~~~~~d~ 828 (995)
T PTZ00419 753 YLELIKPRLSKQ-SDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYL---RKSESISIAKYPQPNPGWNNE 828 (995)
T ss_pred HHHHhhhhhhcC-CCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccC---CCCCeeeccCCCCCCcccCCH
Confidence 999999998432 3445677899999999999999999999999999999997420 124699999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEe-ChhhHHHHHHhHHHHHHhhhcccEEEe
Q psy15223 2373 KLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLF 2440 (2492)
Q Consensus 2373 ~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~ 2440 (2492)
+++..|+.++ .+.+.+|++|++.+|+.+....+.+.. +.+..+.++.+.+.|+.++++++|++.
T Consensus 829 ~~e~~~~~~~----~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i~~l~~~~~v~~~ 893 (995)
T PTZ00419 829 ALDEEMKIIM----SIVKSIRSLIATLGIPNKTKPDCYVTAKDAELIELIESAENLISTLAKIGSVSVI 893 (995)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHcCCCCCCceeEEEEeCCHHHHHHHHHHHHHHHHhcCCCeeEEe
Confidence 7877777665 477889999999999887776665544 445567788888999999999999886
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-145 Score=1501.85 Aligned_cols=766 Identities=23% Similarity=0.366 Sum_probs=659.3
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh----Cc---CCCHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY----GK---NLSPI 518 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~----~~---~~~~~ 518 (2492)
+.++++|+|++|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||+|.+|++.+ |. +++++
T Consensus 124 ~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re 203 (1066)
T PLN02381 124 KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGRE 203 (1066)
T ss_pred cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHH
Confidence 346788999999999999999999999999999999999999999999999999999999999877 32 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
+|+++|++|+.++++.|++||++||+++||+++|+||||.|+++++|+|.+||++|||||+.+||||||.|+||||++||
T Consensus 204 ~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EV 283 (1066)
T PLN02381 204 EFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEV 283 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccEEEEEeecCCchh---hh--hhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCcee
Q psy15223 599 EYKKKYDFSIYVGFSFSEPEK---IK--SIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673 (2492)
Q Consensus 599 ey~~~~~~s~yv~f~~~~~~~---~~--~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~ 673 (2492)
+|.++.++++| +|+..+... .. ..+.+. +.+.+++|||||||||+|++||+|||+++
T Consensus 284 ey~d~~~~s~~-~~~~~~~~~~~g~~~~~~Y~l~---~~~~~i~vATtRpEti~g~~avaV~P~d~-------------- 345 (1066)
T PLN02381 284 DYIDIKERTLL-KVPGYDKPVEFGVLTSFAYPLE---GGLGEIVVATTRIETMLGDTAIAIHPDDE-------------- 345 (1066)
T ss_pred hhhccccchhh-cccCCCcceeeEEEEEEEEEec---CCCCEEEEecCCHHHHhcccceeeCCCCc--------------
Confidence 99999988877 666432210 00 001111 12357999999999999999999999964
Q ss_pred eeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEec-CCcccCCCCccEEecCCCCHHHHHH
Q psy15223 674 ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLI 752 (2492)
Q Consensus 674 i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~-~~V~~~~GTG~Vh~aPahg~~D~~~ 752 (2492)
+ +++|+|++|.|||. ++.+|||.+ +||++++|||+||+|||||++||++
T Consensus 346 ------------r------------y~~L~G~~~~~Pl~------~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~ 395 (1066)
T PLN02381 346 ------------R------------YKHLHGKFAVHPFN------GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEV 395 (1066)
T ss_pred ------------c------------hhhhCCCEEECCCC------CCEEEEEECCccccccCCCCcEEecCCCChHHHHH
Confidence 1 25789999999998 889999986 5999999999999999999999999
Q ss_pred HHHcCCCCCCcccccCCCCcccccC-CCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccce
Q psy15223 753 FKKQNMKDSDIINPVMDDGNFISTL-PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWF 831 (2492)
Q Consensus 753 ~~~~~l~~~~~~~~vd~~G~~~~~~-~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWF 831 (2492)
|++||| ++++++|++|+|++++ +.|+|+++++||+.|++.|++.|.|++.+.++|+||||||||+||++++++|||
T Consensus 396 ~~~~~L---~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWF 472 (1066)
T PLN02381 396 GKRHNL---EFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWF 472 (1066)
T ss_pred HHHcCC---CeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccce
Confidence 999999 8999999999999886 489999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcchhHHHHHHHHHHh-----hcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHH
Q psy15223 832 INMDKIPKNEKKSLRESAITAI-----NKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE 906 (2492)
Q Consensus 832 i~~~~~~~~~~~~~~~~~~~~i-----~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~ 906 (2492)
|+++. +++++++++ ++|+|+|++.++++.+||++++||||||||+||||||+|||..++..
T Consensus 473 i~~~~--------l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~------ 538 (1066)
T PLN02381 473 VNCSS--------MAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQ------ 538 (1066)
T ss_pred EEchH--------HHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhh------
Confidence 99998 999999998 78999999999999999999999999999999999999998622110
Q ss_pred HHHHHHHHHhhcCC--cccccc-CchhhcCC------C-ccCceecCCccccccccccccchhcccCc---cccCCcCee
Q psy15223 907 LIELIAKKIELNGI--EIWQNL-DIKEFLGD------D-AVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPAD 973 (2492)
Q Consensus 907 ~i~~~~~~~~~~g~--~~w~~~-~~~~~~~~------~-~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~D 973 (2492)
+...|+ +.|+.. +..+.++. + ...+++++||||||||||++|+++++++. +++++||+|
T Consensus 539 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d 610 (1066)
T PLN02381 539 --------LKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTS 610 (1066)
T ss_pred --------cccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCe
Confidence 112232 456532 22222221 1 12489999999999999999999988643 236799999
Q ss_pred eeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh-------------------
Q psy15223 974 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN------------------- 1034 (2492)
Q Consensus 974 l~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~------------------- 1034 (2492)
++++|+||+||||+++++.++++++.+||++|++||||+|.+|+|||||+||||+|.++|+
T Consensus 611 ~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~ 690 (1066)
T PLN02381 611 VLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPK 690 (1066)
T ss_pred eeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------hcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcccccc
Q psy15223 1035 ------------------LFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD-FNPNINIIKI 1094 (2492)
Q Consensus 1035 ------------------~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~-~~~~~~~~~~ 1094 (2492)
+||||+||||+++. ..++|++|+.+.+....++++||||++||+++++.+ |++.. .++.
T Consensus 691 e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~-~~~~ 769 (1066)
T PLN02381 691 ELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPA-TLSV 769 (1066)
T ss_pred hhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCccc-ccCc
Confidence 79999999999975 467899999999998889999999999999988763 44321 1223
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHHHHH
Q psy15223 1095 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWHINQ 1173 (2492)
Q Consensus 1095 ~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~-~~~~r~sa~~~L~~il~ 1173 (2492)
..+..+|+|++++|+.++++++++|++|+|+.|++.+++|++.+|||+||+.+|+|+|++.. ++..|++++++|+.++.
T Consensus 770 ~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~ 849 (1066)
T PLN02381 770 ETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLD 849 (1066)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHH
Confidence 44667999999999999999999999999999999999999999999999999999997643 34567889999999999
Q ss_pred HHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCC
Q psy15223 1174 SLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTG-IIG 1252 (2492)
Q Consensus 1174 ~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k-~i~ 1252 (2492)
.+++||+|||||+|||||+.|+... .....+||+++.||+.++.+.+..+++.++.+.++. ..++.+|++. .+.
T Consensus 850 ~llrLL~PfmPfitEELw~~L~~~~-~~~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii----~~iR~lR~~~~~i~ 924 (1066)
T PLN02381 850 TGLRLLHPFMPFVTEELWQRLPQPK-DHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTV----KCLRSLRAEVLEKQ 924 (1066)
T ss_pred HHHHHHHhHhHHHHHHHHHHhhhhc-cCCCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHH----HHHHHHHHHccccc
Confidence 9999999999999999999997420 001236999999999876666777777787777544 4555678877 555
Q ss_pred CCcceEEEEE-eCchhHHHHHHhHHHHHHhhhccceEEe
Q psy15223 1253 SSLQAEIILK-INKLDFEILNEFGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1253 ~s~~a~v~i~-~~~~~~~~l~~~~~~L~~l~~vs~v~i~ 1290 (2492)
......+.+. .+.+..+.++.+...|..+.++++|++.
T Consensus 925 ~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~ 963 (1066)
T PLN02381 925 KNERLPAFALCRNQEIAAIIKSHQLEILTLANLSSLKVL 963 (1066)
T ss_pred cCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCeeeee
Confidence 4444334333 3445567788888889999998877763
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-145 Score=1503.49 Aligned_cols=760 Identities=25% Similarity=0.420 Sum_probs=684.9
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+++.++|++||++|+++++|++.. + .+++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 8 ~y~~~~~E~~~~~~W~~~~~f~~~~--~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 8 TYDPKEVEAKWYQKWEEKGYFKPDD--N-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCc--C-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 5788899999999999999998743 2 345699999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLYG---K---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~~---~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||+|+|.++++.++ . .+++++|++.|++|+.++++.|++||++||+|+||+|+|+||||.|.++|+|+|.+||+
T Consensus 85 ~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 164 (874)
T PRK05729 85 AGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYE 164 (874)
T ss_pred cchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999998763 2 57889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.+||+|||.|+|+|||+||+|++..++++|++|++.+ .+.+++|||||||||+||+||
T Consensus 165 ~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~---------------~~~~l~vaTtrPeTl~~~~av 229 (874)
T PRK05729 165 KGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLAD---------------GSDYLVVATTRPETMLGDTAV 229 (874)
T ss_pred CCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecC---------------CCcEEEEEeCCcchhhcCeeE
Confidence 99999999999999999999999999999999999999999854 246999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +|. +|+|++|.||++ ++++|||+++||++
T Consensus 230 aV~P~d~--------------------------ry~------------~l~g~~~~~P~~------~~~ipii~~~~V~~ 265 (874)
T PRK05729 230 AVNPEDE--------------------------RYK------------HLIGKTVILPLV------GREIPIIADEYVDP 265 (874)
T ss_pred eECCCcc--------------------------HHH------------HhcCCEEECCCC------CCeeeEecCccCCC
Confidence 9999952 222 689999999999 89999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||++||||++||+++++|+| ++++++|++|+|+++++.|+|+++++||+.|++.|++.|.+++.++++|+|
T Consensus 266 ~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~ 342 (874)
T PRK05729 266 EFGTGAVKITPAHDPNDFEVGKRHNL---PMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSV 342 (874)
T ss_pred CCCCcceEecCCCCHHHHHHHHHcCC---CcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
|+|||||+||++++++|||+++++ ++++++++++ +++|+|+..++++.+||++++||||||||+||||||
T Consensus 343 p~~~R~~~~i~~~~~~QWFi~~~~--------~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP 414 (874)
T PRK05729 343 GHSDRSGVVIEPYLSDQWFVKMKP--------LAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIP 414 (874)
T ss_pred CeeCCCCceEEEEecCcceEehHH--------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCccc
Confidence 999999999999999999999998 9999999995 699999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc---ccc
Q psy15223 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQ 2117 (2492)
Q Consensus 2041 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~ 2117 (2492)
+|+|.+ +.+.+ |.+.+. . .....+++++||||||||||++|+++++... +++
T Consensus 415 ~~~~~~-~~~~v--------------------~~~~~~--~--~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~ 469 (874)
T PRK05729 415 AWYDED-GEVYV--------------------GREEPE--A--REKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLK 469 (874)
T ss_pred EEEeCC-CcEEe--------------------CCcccc--c--ccccCeEeCCceecceecCCccHHHHhCCCCCcHHHH
Confidence 999976 33321 111110 0 0112489999999999999999999986532 235
Q ss_pred CCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2118 ~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
.+||+|++++|+||+|+|+.++++.+..+.++.||++|++||+|+|.+|+|||||+||+|+|.++|++||+|+||||+++
T Consensus 470 ~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~ 549 (874)
T PRK05729 470 RFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAA 549 (874)
T ss_pred hcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHH
Q psy15223 2198 T-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHM 2276 (2492)
Q Consensus 2198 ~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 2276 (2492)
. +.++|++|+++.+....+++++|||+.||+++++.++.+.. ......+...|+|++++++++++.+.++|++|+|+.
T Consensus 550 ~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~ 628 (874)
T PRK05729 550 LASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGE-LPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDE 628 (874)
T ss_pred CCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 4 78999999999999999999999999999988765543221 111234578899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCC
Q psy15223 2277 IVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGET 2356 (2492)
Q Consensus 2277 a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~s 2356 (2492)
|++.+++|+++++||+||+.+|+++| . . .+++++.+++++++.+++||+|||||+|||||+.|+.. ...+|
T Consensus 629 a~~~l~~f~~~~~~~~Yle~~k~~l~-~---~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~----~~~~s 699 (874)
T PRK05729 629 AARALYEFIWNEFCDWYLELAKPVLQ-E---A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL----GIEES 699 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-h---h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC----CCCCc
Confidence 99999999999999999999999988 2 1 26789999999999999999999999999999999753 12358
Q ss_pred eeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEe-ChhhHHHHHHhHHHHHHhhhcc
Q psy15223 2357 IFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTS 2435 (2492)
Q Consensus 2357 V~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~-~~~~~~~l~~~~~~L~~l~~vs 2435 (2492)
|+.++||+.++.+ ++++++.|+.++ .+.+.+|++|++++|+.+.+..+.+.. +....+.++.+.+.|+.+++++
T Consensus 700 i~~~~~P~~~~~~-~~~~~~~~~~~~----~ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~ 774 (874)
T PRK05729 700 IMLAPWPEADEAI-DEAAEAEFEWLK----ELITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLE 774 (874)
T ss_pred eeecCCCCCCccc-CHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999987766 777777777665 488899999999999998888777754 4455677888889999999999
Q ss_pred cEEEee
Q psy15223 2436 SVSLFQ 2441 (2492)
Q Consensus 2436 ~v~i~~ 2441 (2492)
+|++..
T Consensus 775 ~v~~~~ 780 (874)
T PRK05729 775 SLEILA 780 (874)
T ss_pred ceEEec
Confidence 999865
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-144 Score=1493.85 Aligned_cols=767 Identities=22% Similarity=0.376 Sum_probs=671.5
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+++.+ |++||++|+++++|++.. +.++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 60 ~y~~~~-E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 60 SFDFTS-EERIYNWWESQGYFKPNF--DRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred CCChhh-hHHHHHHHHHCCCcccCc--ccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 367777 999999999999998743 24678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLY---GK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~---~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||||+|.+++|.+ |. .+++++|+++|++|+.++++.|++||++||+|+||+|+|+||||.|+++++|+|.+||+
T Consensus 137 ~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~ 216 (958)
T PLN02943 137 AGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHE 216 (958)
T ss_pred ccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999987 32 57889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.+||+|||.|+|+|||+||+|++..++++||+|++.+. .+.+++||||||||||||+||
T Consensus 217 ~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~--------------~~~~l~vaTTrPeTl~~~~av 282 (958)
T PLN02943 217 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGG--------------SEDFLTIATTRPETLFGDVAI 282 (958)
T ss_pred CCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCC--------------CCCEEEEEeCChhhhhcceEE
Confidence 999999999999999999999999999999999999999998542 235899999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +|. .|+|++|.||++. ++++||++++||++
T Consensus 283 avnP~d~--------------------------ry~------------~l~g~~~~~Pl~~-----~~~ipii~~~~V~~ 319 (958)
T PLN02943 283 AVNPEDD--------------------------RYS------------KYIGKMAIVPMTY-----GRHVPIIADRYVDK 319 (958)
T ss_pred EECCCCH--------------------------HHH------------HHcCCEEECCCcC-----CCeeeEEecCcccC
Confidence 9999964 222 4679999999942 78999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||++||||++||+++++||| ++++++|++|+|++. .|+.+++||+.|++.|+++|+|++.++++|+|
T Consensus 320 ~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~id~~G~~~~~----~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~ 392 (958)
T PLN02943 320 DFGTGVLKISPGHDHNDYLLARKLGL---PILNVMNKDGTLNEV----AGLYWFEAREKLWSDLEETGLAVKKEPHTLRV 392 (958)
T ss_pred CCCCceEEeCCCCChHHHHHHHHcCC---CceeeeCCCceeecc----CCccHHHHHHHHHHHHHHCCCeeeeeeeecCC
Confidence 99999999999999999999999999 999999999999875 46669999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
|+|||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||||||
T Consensus 393 p~c~R~~~~Ie~~~~~QWFi~~~~--------l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP 464 (958)
T PLN02943 393 PRSQRGGEVIEPLVSKQWFVTMEP--------LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIP 464 (958)
T ss_pred CeeCCCCcEeEEEeccceeEEHHH--------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccC
Confidence 999999999999999999999998 9999999996 599999999999999999999999999999999999
Q ss_pred EEEE--CCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc----
Q psy15223 2041 FFIH--KKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---- 2114 (2492)
Q Consensus 2041 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---- 2114 (2492)
+|+| .+|+..........+.+....+..| ....+.+++||||||||||++|++.++...
T Consensus 465 ~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g---------------~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~ 529 (958)
T PLN02943 465 VWYIVGKDCEEDYIVARSAEEALEKAREKYG---------------KDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAE 529 (958)
T ss_pred ceeccccCCCceEEecCcHHHHHHHhhhhcC---------------CchheeecCceEEEEEcCccchHHhcCCCccChH
Confidence 9997 4665411111111111111111111 112478999999999999999999986532
Q ss_pred cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHH
Q psy15223 2115 KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2115 ~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~ 2194 (2492)
+++++||+|++++|+||+|+||.+|++.+..+.++.||+++++||+++|.+|+|||||+||+|+|.+++++||+|++|||
T Consensus 530 ~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~ 609 (958)
T PLN02943 530 DFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFT 609 (958)
T ss_pred HHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------CCCcccccccccchHHHHHHHHHHH
Q psy15223 2195 VASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDF--------------NPNINIIKISDMVEIDKYAIINITN 2260 (2492)
Q Consensus 2195 l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~--------------~~~~~~~~~~~~~~~D~~il~~l~~ 2260 (2492)
++++++++|++|+++.+....+.+++|||+.+|+++++.+. ++. .+...+...|+||++++++
T Consensus 610 l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~D~wilskl~~ 686 (958)
T PLN02943 610 LALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKE---ESLLSLPLPECWVVSKLHE 686 (958)
T ss_pred HHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCcc---ccccccCHHHHHHHHHHHH
Confidence 99877899999999999999999999999999998876431 111 0112456889999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 2261 LQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340 (2492)
Q Consensus 2261 ~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEel 2340 (2492)
++++++++|++|+|+.|++.+++|+++++||+|++.+|+++|+... ...+.+++++++++++.+++||+|||||+||||
T Consensus 687 ~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~-~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEEL 765 (958)
T PLN02943 687 LIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD-NSALSRAQAVLLYVFENILKLLHPFMPFVTEEL 765 (958)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc-hHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence 9999999999999999999999999899999999999999997533 234678999999999999999999999999999
Q ss_pred HHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHH
Q psy15223 2341 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEI 2420 (2492)
Q Consensus 2341 w~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~ 2420 (2492)
|+.|++. .+||+.+.||+.. ...+.++++.++.++ ++.+.+|++|++.++.++....+.+....+..+.
T Consensus 766 wq~L~~~------~~si~~~~wP~~~-~~~d~~~~~~~~~v~----~ii~~iR~~r~~~~i~~~~~~~~~i~~~~~~~~~ 834 (958)
T PLN02943 766 WQALPYR------KEALIVSPWPQTS-LPKDLKSIKRFENLQ----SLTRAIRNARAEYSVEPAKRISASIVASAEVIEY 834 (958)
T ss_pred HHHcCCC------CCceeecCCCCCc-ccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCcccEEEecChhHHHH
Confidence 9999753 3589999999975 344555666666654 5778899999999998777766666554444566
Q ss_pred HHHhHHHHHHhhhcc--cEEEe
Q psy15223 2421 LNEFGEELKFFLLTS--SVSLF 2440 (2492)
Q Consensus 2421 l~~~~~~L~~l~~vs--~v~i~ 2440 (2492)
+....+.|+.|.+++ ++++.
T Consensus 835 ~~~~~~~i~~l~~~~~~~~~~~ 856 (958)
T PLN02943 835 ISKEKEVLALLSRLDLQNVHFT 856 (958)
T ss_pred HHHHHHHHHHHhcCcccccccc
Confidence 777778888888764 67664
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-144 Score=1496.70 Aligned_cols=771 Identities=22% Similarity=0.368 Sum_probs=679.5
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
++++.++|++||++|+++++|++.. .+.++++|+|++||||+||.|||||++|++++||++||+||+||+|+|+|||||
T Consensus 18 ~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 18 GYEHREVEARWYPFWQERGYFHGDE-HDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCc-ccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 4788899999999999999998742 245678999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||+|.++++.++. ++++++|++.|++|+.++++.|++||++||+|+||+++|+|+||+|.++++|+|.+||
T Consensus 97 ~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~ 176 (1052)
T PRK14900 97 AGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLH 176 (1052)
T ss_pred cchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHH
Confidence 999999999987632 6789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCccccccccccee-eecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcccc
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEIEYKK-KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQ 1800 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Evey~~-~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ 1800 (2492)
++|||||+.+||+|||.|+|+|||+||+|++ ..+..+||+|++.+. +.+++||||||||||||+
T Consensus 177 ~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~---------------~~~l~vaTTrPeTl~~~~ 241 (1052)
T PRK14900 177 EEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADG---------------SGEIVVATTRPETMLGDT 241 (1052)
T ss_pred HCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCC---------------CcEEEEEECchhhhhcce
Confidence 9999999999999999999999999999998 567778999998542 358999999999999999
Q ss_pred EEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEec-Cc
Q psy15223 1801 ALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DY 1879 (2492)
Q Consensus 1801 ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~-~~ 1879 (2492)
||||||+++ +|. +|+|++|.||++ ++.+|||.+ +|
T Consensus 242 avaV~P~~~--------------------------~y~------------~L~G~~~~~Pl~------~~~ipIi~d~~~ 277 (1052)
T PRK14900 242 AVAVHPLDP--------------------------RYM------------ALHGKKVRHPIT------GRTFPIVADAIL 277 (1052)
T ss_pred eEEECCCcH--------------------------HHH------------HhcCCEEECCCC------CCeeEEEecccc
Confidence 999999953 222 689999999998 899999965 48
Q ss_pred cccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeec
Q psy15223 1880 ITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFE 1959 (2492)
Q Consensus 1880 V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~ 1959 (2492)
|++++|||+||++||||++||+++++|+| ++++++|++|+|+++++.|.|+++++||+.|++.|++.|++++.+.|+
T Consensus 278 vd~~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~ 354 (1052)
T PRK14900 278 VDPKFGTGAVKVTPAHDFNDFEVGKRHGL---EMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHV 354 (1052)
T ss_pred cCcCCCCCeEEecCCCChhHHHHHHHcCC---CccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeee
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhc--ceEecccchhHHHHhhhCCCCcccccccCCCc
Q psy15223 1960 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGV 2037 (2492)
Q Consensus 1960 h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~--v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~ 2037 (2492)
|+||||||||+||++++++||||++++ +++++++++++ ++|+|++.++++.+||++++||||||||+|||
T Consensus 355 h~~~~c~R~~~~ie~~~s~qWFi~l~~--------~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~ 426 (1052)
T PRK14900 355 LPLGRCQRSATILEPLLSDQWYVRIEP--------LARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGH 426 (1052)
T ss_pred ccCceeCCCCceEEEEeccceeeehHH--------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCc
Confidence 999999999999999999999999998 99999999964 99999999999999999999999999999999
Q ss_pred eeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcC-CCccCceecccccccccccCcchhhhccCCc--
Q psy15223 2038 PIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-- 2114 (2492)
Q Consensus 2038 pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-- 2114 (2492)
|||+|+|+++..+. ... . ...++ +....+.+++||||||||||++|++.++...
T Consensus 427 PIP~w~~~~~~~~v-~~~-~---------------------~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~ 483 (1052)
T PRK14900 427 QIPAWYCPDGHVTV-ARE-T---------------------PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQT 483 (1052)
T ss_pred eeCeEEcCCCcEEe-ccc-c---------------------cccccccCccceecCCceEEEEEcCChHHHHHHcCCCch
Confidence 99999997643221 110 0 00011 1233588999999999999999998886432
Q ss_pred -cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2115 -KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2115 -~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
+++.|||+|+|++|+||+++||.++++.++.+.+..||++|++|||++|.+|+|||||+||+|+|.++|++||+|+|||
T Consensus 484 ~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~ 563 (1052)
T PRK14900 484 DTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRF 563 (1052)
T ss_pred HHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHH
Confidence 2356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcc
Q psy15223 2194 WVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMY 2272 (2492)
Q Consensus 2194 ~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~ 2272 (2492)
||++ ++.++|++|+++.++...+++++|||+.||+++++.+|.+....+....+...|+||+++++.++++++++|++|
T Consensus 564 ~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y 643 (1052)
T PRK14900 564 TLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAF 643 (1052)
T ss_pred HHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9996 578999999999998888999999999999988776664432222223456789999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCcccc
Q psy15223 2273 EFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIE 2352 (2492)
Q Consensus 2273 ~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~ 2352 (2492)
+|++|++.+++|+++++||+||+..|+++|.. +...+.+++.+|+++++.+++||+|||||+|||||+.|+.......
T Consensus 644 ~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~ 721 (1052)
T PRK14900 644 RFNDAANAVYAFVWHELCDWYIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASA 721 (1052)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHhccHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999999999874 3445667899999999999999999999999999999975200001
Q ss_pred CCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcee----EEEEEe-ChhhHHHHHH-hHH
Q psy15223 2353 SGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQA----EIILKI-NKLDFEILNE-FGE 2426 (2492)
Q Consensus 2353 ~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~----~v~i~~-~~~~~~~l~~-~~~ 2426 (2492)
..+||+++.||+.++ .++.+++.++.++ .+...+|++|++.+|+.+... .+.|.. +.+..+.++. +.+
T Consensus 722 ~~~SV~~~~wP~~~~--~d~~~e~~~~~v~----~ii~~iR~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~ 795 (1052)
T PRK14900 722 WADSVLAAEYPRKGE--ADEAAEAAFRPVL----GIIDAVRNIRGEMGIPWKVKLGAQAPVEIAVADPALRDLLQAGELA 795 (1052)
T ss_pred CCCceeecCCCCCCc--ccHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHH
Confidence 136999999999765 4555666665554 577889999999999876654 455533 4455566777 788
Q ss_pred HHHHhhhcccEEEee
Q psy15223 2427 ELKFFLLTSSVSLFQ 2441 (2492)
Q Consensus 2427 ~L~~l~~vs~v~i~~ 2441 (2492)
.|..++++++|++..
T Consensus 796 ~i~~l~~~~~v~~~~ 810 (1052)
T PRK14900 796 RVHRVAGVEGSRLVV 810 (1052)
T ss_pred HHHHhhCCCeeEeec
Confidence 899999999999864
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-143 Score=1505.14 Aligned_cols=764 Identities=24% Similarity=0.365 Sum_probs=664.2
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPI 518 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~ 518 (2492)
+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||+|.++|+.++. +++++
T Consensus 56 ~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e 135 (995)
T PTZ00419 56 LNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGRE 135 (995)
T ss_pred cCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999987631 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
+|+++|++|+.++++.|++||++||+++||+++|+||||.|++.++++|.+|+++|||||+.+||+|||.|+|||||+||
T Consensus 136 ~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EV 215 (995)
T PTZ00419 136 EFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV 215 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccEEEEEeecCCch---hh--hhhhccCCCCCCC-eEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCce
Q psy15223 599 EYKKKYDFSIYVGFSFSEPE---KI--KSIFNLKNLPSGK-GYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL 672 (2492)
Q Consensus 599 ey~~~~~~s~yv~f~~~~~~---~~--~~~~~~~~~~~~~-~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~ 672 (2492)
+|+++.++++ ++|+..... +. .-+|.+. +.+ .+++||||||||||||+||||||+++
T Consensus 216 e~~~~~~~~~-~~~~~~~~~~~~g~l~~i~f~l~---~~~~~~l~vaTTrPeTl~g~~avav~P~d~------------- 278 (995)
T PTZ00419 216 EFEEIEKPTK-ITIPGYDKKVEVGVLWHFAYPLE---DSGQEEIVVATTRIETMLGDVAVAVHPKDE------------- 278 (995)
T ss_pred ccccccccce-eeccccccccccceeEEEEEeec---CCCCcEEEEEeCCcchhhhCeEEEECCCCc-------------
Confidence 9999998876 555443211 00 0001111 122 39999999999999999999999964
Q ss_pred eeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCC-cccccCCCceecEEecC-CcccCCCCccEEecCCCCHHHH
Q psy15223 673 LILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPL-SNIDINYNRLSPIYLGD-YITVDSGTGIVHSAPAYGIEDF 750 (2492)
Q Consensus 673 ~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~~~~~~~pii~~~-~V~~~~GTG~Vh~aPahg~~D~ 750 (2492)
+| ++|+|++|.||+ . ++.+|||+++ ||++++|||+||+|||||++||
T Consensus 279 -------------~y------------~~l~G~~~~~Pl~~------~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~ 327 (995)
T PTZ00419 279 -------------RY------------KKLHGKELIHPFIP------DRKIPIIADDELVDMEFGTGAVKITPAHDPNDY 327 (995)
T ss_pred -------------HH------------HHhcCCEEECCccC------CCEEEEEeCCcccCCCcCCCCeEeCCCCChHHH
Confidence 12 468999999999 6 8899999999 9999999999999999999999
Q ss_pred HHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccc
Q psy15223 751 LIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQW 830 (2492)
Q Consensus 751 ~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QW 830 (2492)
+++++||| ++++++|++|+|++++|.|.|+++++||+.|++.|++.|.|++.+.+.|+||||||||+||++++++||
T Consensus 328 ~~~~~~~L---~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QW 404 (995)
T PTZ00419 328 EIAKRHNL---PFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQW 404 (995)
T ss_pred HHHHHcCC---CeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCee
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHH
Q psy15223 831 FINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELI 908 (2492)
Q Consensus 831 Fi~~~~~~~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i 908 (2492)
||+|++ ++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|||++||... .
T Consensus 405 Fi~~~~--------~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~-~----- 470 (995)
T PTZ00419 405 YVNCKD--------MAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPET-D----- 470 (995)
T ss_pred eEecHH--------HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccc-c-----
Confidence 999998 9999999997 79999999999999999999999999999999999999999998431 0
Q ss_pred HHHHHHHhhcCCcccccc-CchhhcC---------CCccCceecCCccccccccccccchhcccCc---cccCCcCeeee
Q psy15223 909 ELIAKKIELNGIEIWQNL-DIKEFLG---------DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLY 975 (2492)
Q Consensus 909 ~~~~~~~~~~g~~~w~~~-~~~~~~~---------~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~ 975 (2492)
..+.+.|+-. +..+.++ .++..+++++||||||||||++|+++++++. +++++||+|++
T Consensus 471 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~ 542 (995)
T PTZ00419 471 --------PSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLL 542 (995)
T ss_pred --------CCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEE
Confidence 1122334321 1111111 1124689999999999999999999887643 23679999999
Q ss_pred ecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh---------------------
Q psy15223 976 LEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN--------------------- 1034 (2492)
Q Consensus 976 ~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~--------------------- 1034 (2492)
++|+||+|+||+++++.+..+.+.+||++|++||+|+|.+|+|||||+||||+|.++|+
T Consensus 543 ~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~ 622 (995)
T PTZ00419 543 ETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEI 622 (995)
T ss_pred EechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------hcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-----c
Q psy15223 1035 ----------------LFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI-----I 1092 (2492)
Q Consensus 1035 ----------------~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~-----~ 1092 (2492)
+||||+||||+++ ++..+|++|+.+.+....++++||||++||+++++.++.+.... .
T Consensus 623 ~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~ 702 (995)
T PTZ00419 623 KRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPN 702 (995)
T ss_pred hhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 8999999999996 56789999999999988899999999999999988765432111 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHH
Q psy15223 1093 KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 1172 (2492)
Q Consensus 1093 ~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il 1172 (2492)
+...+..+|+|+++++++++++++++|++|+|++|++.+++|++.++||+||+++|+|++. ..++.++++++++|+++|
T Consensus 703 ~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~-~~~~~~~~~~~~~L~~vL 781 (995)
T PTZ00419 703 NVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSK-QSDGERKQHAQDVLHTVL 781 (995)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhc-CCCcHHHHHHHHHHHHHH
Confidence 1234567899999999999999999999999999999999999999999999999999943 234566788999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy15223 1173 QSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIG 1252 (2492)
Q Consensus 1173 ~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~ 1252 (2492)
+.++++|+|||||+|||||+.|+.. ....+||+++.||..++.+.+.++++.|+.++++. ..++.+|++..|+
T Consensus 782 ~~~l~LL~PfmPfitEElw~~L~~~---~~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii----~~iR~~r~~~~i~ 854 (995)
T PTZ00419 782 DIGLRLLHPMMPFITEELYQRLPNY---LRKSESISIAKYPQPNPGWNNEALDEEMKIIMSIV----KSIRSLIATLGIP 854 (995)
T ss_pred HHHHHHHhhhhhhhHHHHHHhhhcc---CCCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHH----HHHHHHHHHcCCC
Confidence 9999999999999999999999742 01246999999999776666777778888887554 4556788888888
Q ss_pred CCcceEEEEEe-CchhHHHHHHhHHHHHHhhhccceEEe
Q psy15223 1253 SSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1253 ~s~~a~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~ 1290 (2492)
......+.+.. +++..+.++.+.+.|..++++.+|++.
T Consensus 855 ~~~~l~~~i~~~~~~~~~~~~~~~~~i~~l~~~~~v~~~ 893 (995)
T PTZ00419 855 NKTKPDCYVTAKDAELIELIESAENLISTLAKIGSVSVI 893 (995)
T ss_pred CCCceeEEEEeCCHHHHHHHHHHHHHHHHhcCCCeeEEe
Confidence 76666655543 444567788888899999999888764
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-143 Score=1487.17 Aligned_cols=771 Identities=27% Similarity=0.453 Sum_probs=691.6
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.++++++|++||++|+++++|++.. +.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+|||||
T Consensus 4 ~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 4 DYDPHEVEKKWYKKWEKSGFFKPDG--NSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred CCCHHHHHHHHHHHHHHCCCcccCc--ccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 4678899999999999999998743 34678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||+|||.+|+|.++. ++++++|+++|++|+.++.+.+++||++||+|+||+|+|+||||.|.++|+|+|.+||+
T Consensus 82 ~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 161 (861)
T TIGR00422 82 AGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYE 161 (861)
T ss_pred CCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHH
Confidence 999999999998754 46889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+||||++.++|+|||.|+|+|||+||+|++..++++|++|++.+. .+.+++|||||||||+||+||
T Consensus 162 ~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~--------------~~~~l~vaTtrPeTl~~~~av 227 (861)
T TIGR00422 162 KGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANG--------------SKDYLVVATTRPETMFGDTAV 227 (861)
T ss_pred CCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCC--------------CCCEEEEEeCCcchhhhCeEE
Confidence 999999999999999999999999999999999999999998642 236999999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +|. +|+|++|.+|++ ++++||++++||++
T Consensus 228 ~V~P~~~--------------------------ry~------------~l~g~~~~~P~~------~~~ipii~~~~V~~ 263 (861)
T TIGR00422 228 AVHPEDE--------------------------RYK------------HLIGKKVILPLT------GRKIPIIADEYVDM 263 (861)
T ss_pred EECCCch--------------------------HHH------------HhcCCEEEcCCC------CCcceeeecCCCCc
Confidence 9999953 222 689999999999 88999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
++|||+||++||||++||+++++||| ++++++|++|+|+++++.|+|+++++||+.|++.|+++|.+++.++++|+|
T Consensus 264 ~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~ 340 (861)
T TIGR00422 264 EFGTGAVKVTPAHDFNDYEWGKRHNL---EFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNV 340 (861)
T ss_pred ccCCCceEecCCCChHHHHHHHHcCC---CccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1963 MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1963 p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
|+|||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||||||
T Consensus 341 p~~~R~g~~ve~~~~~qWFi~~~~--------~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP 412 (861)
T TIGR00422 341 GTCWRSGTVVEPLLSKQWFVKVEK--------LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIP 412 (861)
T ss_pred CEeCCCCCEEEEEecCcceEecHH--------HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcce
Confidence 999999999999999999999988 9999999997 699999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc---ccc
Q psy15223 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQ 2117 (2492)
Q Consensus 2041 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~ 2117 (2492)
+|+|++|+.+.+.... .+... .. ..+ ....+.+++||||||||||++|++.++... +++
T Consensus 413 ~w~~~~~~~~~v~~~~-~~~~~----~~------------~~~-~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~ 474 (861)
T TIGR00422 413 VWYCKECGEVYVAKEE-PLPDD----KT------------NTG-PSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLK 474 (861)
T ss_pred EEEECCCCcEEeccch-HHhhh----hh------------ccC-CcccEEECCCcccceeccchHHHHHhCCCCChHHHh
Confidence 9999988875432111 00000 00 001 124689999999999999999999887543 246
Q ss_pred CCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2118 ~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
.+||+|++++|+||+|||+.++++.+.+++++.||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||+++
T Consensus 475 ~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~ 554 (861)
T TIGR00422 475 KFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLAS 554 (861)
T ss_pred hcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHH
Q psy15223 2198 T-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHM 2276 (2492)
Q Consensus 2198 ~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 2276 (2492)
. +.++|++|+++.+....+++++|||+.||+..++..+.. . ..........|+||+++++.+++.++++|++|+|+.
T Consensus 555 ~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~-~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~ 632 (861)
T TIGR00422 555 LVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLE-L-SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAE 632 (861)
T ss_pred CCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccc-c-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 5 569999999999999999999999999999877654411 0 011123567899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCC
Q psy15223 2277 IVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGET 2356 (2492)
Q Consensus 2277 a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~s 2356 (2492)
|++.+++|+++++||+|++.+|+|++... ...+.+++.+|+++++.+++||+|||||+|||||+.|+.. .+|
T Consensus 633 A~~~l~~f~~~~~~n~Yie~~k~~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~------~~s 704 (861)
T TIGR00422 633 AAKALYEFIWNDFCDWYIELVKYRLYNGN--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG------ADS 704 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc------CCc
Confidence 99999999988999999999999998642 4567789999999999999999999999999999999753 369
Q ss_pred eeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEe-ChhhHHHHHHhHHHHHHhhhcc
Q psy15223 2357 IFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTS 2435 (2492)
Q Consensus 2357 V~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~-~~~~~~~l~~~~~~L~~l~~vs 2435 (2492)
|++++||+.++.+.|+++++.++.++ .+...+|++|++.+|+.+....+.+.. +....+.++.+.+.|..+++++
T Consensus 705 i~~~~~P~~~~~~~d~~~e~~~~~l~----~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~ 780 (861)
T TIGR00422 705 IMLQSYPVVDAEFVDEEAEKAFELLK----EIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFS 780 (861)
T ss_pred eeecCCCCcccccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999888777877877777665 577889999999999888776665543 4445577888889999999999
Q ss_pred cEEEeec
Q psy15223 2436 SVSLFQI 2442 (2492)
Q Consensus 2436 ~v~i~~~ 2442 (2492)
+|++...
T Consensus 781 ~v~~~~~ 787 (861)
T TIGR00422 781 EVEVVIE 787 (861)
T ss_pred ceEeecc
Confidence 9998654
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-142 Score=1473.48 Aligned_cols=737 Identities=23% Similarity=0.379 Sum_probs=646.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC---c---CCCHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG---K---NLSPIEI 520 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~---~---~~~~~e~ 520 (2492)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||+|.+|+|.++ . .+++++|
T Consensus 85 ~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f 164 (958)
T PLN02943 85 RGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEF 164 (958)
T ss_pred cCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999873 2 5788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
+++|++|++++++.|++||++||+++||+++|+||||.|+++++++|.+||++|||||+.+||+|||.|+|+||++||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey 244 (958)
T PLN02943 165 TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 244 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhH
Q psy15223 601 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLV 680 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~ 680 (2492)
+++.++++||+|++.+. .+.+++||||||||||||+||||||+++
T Consensus 245 ~e~~~~~~~i~f~l~~~--------------~~~~l~vaTTrPeTl~~~~avavnP~d~--------------------- 289 (958)
T PLN02943 245 SEEPGTLYYIKYRVAGG--------------SEDFLTIATTRPETLFGDVAIAVNPEDD--------------------- 289 (958)
T ss_pred ccccccEEEEEEEEcCC--------------CCCEEEEEeCChhhhhcceEEEECCCCH---------------------
Confidence 99999999999998642 1358999999999999999999999965
Q ss_pred HHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCC
Q psy15223 681 KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKD 760 (2492)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~ 760 (2492)
+| ++|.|+++.||++. ++++|||+++||++++|||+||+|||||++||++|++|||
T Consensus 290 -----ry------------~~l~g~~~~~Pl~~-----~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-- 345 (958)
T PLN02943 290 -----RY------------SKYIGKMAIVPMTY-----GRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGL-- 345 (958)
T ss_pred -----HH------------HHHcCCEEECCCcC-----CCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCC--
Confidence 22 24679999999942 7899999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcc
Q psy15223 761 SDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 840 (2492)
Q Consensus 761 ~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~ 840 (2492)
++++++|++|+|++. .|+.+++||+.|++.|++.|.|++.++++|+||+|||||+||++++++|||+++++
T Consensus 346 -~~~~~id~~G~~~~~----~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~---- 416 (958)
T PLN02943 346 -PILNVMNKDGTLNEV----AGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP---- 416 (958)
T ss_pred -CceeeeCCCceeecc----CCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHH----
Confidence 888999999999874 46679999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEE--CCCCccccCcHHHHHHHHHHHh
Q psy15223 841 EKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH--KKSGKLHPKTLELIELIAKKIE 916 (2492)
Q Consensus 841 ~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~--~~~~~~~~~~~~~i~~~~~~~~ 916 (2492)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+||| .+||+.........+.+.....
T Consensus 417 ----l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~ 492 (958)
T PLN02943 417 ----LAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKARE 492 (958)
T ss_pred ----HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhh
Confidence 9999999996 5999999999999999999999999999999999999998 5677522111111122211111
Q ss_pred hcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeeeeecccccchhhHHHHHHH
Q psy15223 917 LNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLT 992 (2492)
Q Consensus 917 ~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~~~G~D~~rgwf~s~l~~ 992 (2492)
..|. ...+.+++||||||||||++|++.+++.. +++++||+|++++|+||+||||.++++.
T Consensus 493 ~~g~---------------~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~ 557 (958)
T PLN02943 493 KYGK---------------DVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMM 557 (958)
T ss_pred hcCC---------------chheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHh
Confidence 1111 12478899999999999999999987643 3368999999999999999999999999
Q ss_pred HHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHH
Q psy15223 993 SIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIR 1072 (2492)
Q Consensus 993 ~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~ 1072 (2492)
+..+.+..||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++|+++.+....+++++|+
T Consensus 558 ~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~ 637 (958)
T PLN02943 558 GIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLW 637 (958)
T ss_pred hhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHhhcCCCC--------------CCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q psy15223 1073 NTLRFLLANTSDF--------------NPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 1138 (2492)
Q Consensus 1073 n~~rf~l~~l~~~--------------~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ 1138 (2492)
|+.||+++++.+. ++. .+...+...|+|++++++.+++++.++|++|+|+.|++.+++|++++
T Consensus 638 N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~ 714 (958)
T PLN02943 638 NAGKFVLQNLPSQSDTSAWEHILACKFDKE---ESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSD 714 (958)
T ss_pred HHHHHHHhccccccccccccccccccCCcc---ccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Confidence 9999998876431 111 11124568899999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCccc
Q psy15223 1139 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKV 1218 (2492)
Q Consensus 1139 ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~ 1218 (2492)
+||+|++.+|+|+|++..+ ..+++++++|+.+++.+++||+|||||+|||||+.|+.. .+||+++.||+.. .
T Consensus 715 ~~d~YiE~~Kprl~~~~~~-~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~------~~si~~~~wP~~~-~ 786 (958)
T PLN02943 715 FADWYIEASKTRLYHSGDN-SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR------KEALIVSPWPQTS-L 786 (958)
T ss_pred HHHHHHHhccHhhccCCch-HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC------CCceeecCCCCCc-c
Confidence 9999999999999976432 447789999999999999999999999999999999753 3699999999865 3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhcc
Q psy15223 1219 YNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTS 1285 (2492)
Q Consensus 1219 ~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs 1285 (2492)
..+.++++.++.+.++ .+.++.+|++..+..+....+.+....+..+.+....+.|..+.+++
T Consensus 787 ~~d~~~~~~~~~v~~i----i~~iR~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~ 849 (958)
T PLN02943 787 PKDLKSIKRFENLQSL----TRAIRNARAEYSVEPAKRISASIVASAEVIEYISKEKEVLALLSRLD 849 (958)
T ss_pred cCCHHHHHHHHHHHHH----HHHHHHHHHHcCCCCCCcccEEEecChhHHHHHHHHHHHHHHHhcCc
Confidence 3355566667777654 44556788888887766666666554444566677777788777643
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-142 Score=1478.73 Aligned_cols=732 Identities=25% Similarity=0.412 Sum_probs=661.5
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQN 522 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e~~~ 522 (2492)
+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||+|.++++.++. .+++++|++
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~ 114 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLE 114 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999987632 578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc
Q psy15223 523 KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 602 (2492)
Q Consensus 523 ~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~ 602 (2492)
+|++|++++.+.|++||++||+++||+|+|+||||.|.++++++|.+||++|||||+.+||+|||.|+|+|||+||+|++
T Consensus 115 ~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~ 194 (874)
T PRK05729 115 KVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKE 194 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHH
Q psy15223 603 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 682 (2492)
Q Consensus 603 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~ 682 (2492)
+.++++|++|++.+. +.+++|||||||||+||+||||||+++
T Consensus 195 ~~~~~~~i~f~~~~~---------------~~~l~vaTtrPeTl~~~~avaV~P~d~----------------------- 236 (874)
T PRK05729 195 VKGKLWHIRYPLADG---------------SDYLVVATTRPETMLGDTAVAVNPEDE----------------------- 236 (874)
T ss_pred ccceEEEEEEEecCC---------------CcEEEEEeCCcchhhcCeeEeECCCcc-----------------------
Confidence 999999999998642 468999999999999999999999953
Q ss_pred HHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCC
Q psy15223 683 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 762 (2492)
Q Consensus 683 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~ 762 (2492)
+| ++|+|++|.||+. ++++|||+++||++++|||+||++||||++||+++++||| +
T Consensus 237 ---ry------------~~l~g~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l---~ 292 (874)
T PRK05729 237 ---RY------------KHLIGKTVILPLV------GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNL---P 292 (874)
T ss_pred ---HH------------HHhcCCEEECCCC------CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCC---C
Confidence 22 4789999999998 8999999999999999999999999999999999999999 8
Q ss_pred cccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 763 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~ 842 (2492)
+++++|++|+|++++|.|+|+++++||+.|++.|++.|.+.+.+++.|+||||||||+||++++++|||+++++
T Consensus 293 ~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~------ 366 (874)
T PRK05729 293 MINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKP------ 366 (874)
T ss_pred cccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHH------
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC
Q psy15223 843 KSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI 920 (2492)
Q Consensus 843 ~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 920 (2492)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|||.+ |+..+
T Consensus 367 --~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~-~~~~v------------------ 425 (874)
T PRK05729 367 --LAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED-GEVYV------------------ 425 (874)
T ss_pred --HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC-CcEEe------------------
Confidence 9999999995 699999999999999999999999999999999999999976 44331
Q ss_pred ccccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhc
Q psy15223 921 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 921 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
|.+.+. . .....+++++||||||||||++|++++++.. +++++||+|++++|+||+|+|+.++++.+..+.
T Consensus 426 --~~~~~~--~--~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~ 499 (874)
T PRK05729 426 --GREEPE--A--REKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFT 499 (874)
T ss_pred --CCcccc--c--ccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhc
Confidence 222110 0 0113589999999999999999999987643 236799999999999999999999999999999
Q ss_pred CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHH
Q psy15223 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLR 1076 (2492)
Q Consensus 998 ~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r 1076 (2492)
+..||++|++||+++|.+|+|||||+||+|+|.++|++||+|+||||+++. ++++|++|+++.++...+++++|||+.|
T Consensus 500 ~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~R 579 (874)
T PRK05729 500 GQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASR 579 (874)
T ss_pred CCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 7889999999999999999999999999
Q ss_pred HHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC
Q psy15223 1077 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK 1156 (2492)
Q Consensus 1077 f~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~ 1156 (2492)
|++.++.++.+.. ......+...|+|++++++++++++.++|++|+|+.|++.+++|+++++|++|++.+|+|+| +
T Consensus 580 f~~~~~~~~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~-- 655 (874)
T PRK05729 580 FVLMNLEGADVGE-LPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E-- 655 (874)
T ss_pred HHHHhcccCCccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--
Confidence 9988766543321 11223457889999999999999999999999999999999999999999999999999998 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHH
Q psy15223 1157 NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRS 1236 (2492)
Q Consensus 1157 ~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~ 1236 (2492)
. .+++++.+|+++++.++++|+|||||+|||||+.|+.. ...+||+++.||+.++.+ +..+++.++.+++
T Consensus 656 -~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~----~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~--- 725 (874)
T PRK05729 656 -A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL----GIEESIMLAPWPEADEAI-DEAAEAEFEWLKE--- 725 (874)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC----CCCCceeecCCCCCCccc-CHHHHHHHHHHHH---
Confidence 1 27789999999999999999999999999999999753 123589999999977655 6667777777764
Q ss_pred HHHHHHHHHHhhCCCCCCcceEEEEEe-CchhHHHHHHhHHHHHHhhhccceEEe
Q psy15223 1237 KVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1237 ~v~~~le~~R~~k~i~~s~~a~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~ 1290 (2492)
+...++.+|+++.|+.+.+..+.+.. +....+.++.+.+.|..++++++|++.
T Consensus 726 -ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~ 779 (874)
T PRK05729 726 -LITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEIL 779 (874)
T ss_pred -HHHHHHHHHHhcCCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcCceEEe
Confidence 56677789999999988888877754 344567788888899999999998874
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-142 Score=1474.86 Aligned_cols=744 Identities=22% Similarity=0.373 Sum_probs=654.9
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPI 518 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~ 518 (2492)
+.++++|+|++||||+||.|||||++|++++||++||+||+||+|+|+|||||||||+|.++++.++. +++++
T Consensus 44 ~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e 123 (1052)
T PRK14900 44 DRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGRE 123 (1052)
T ss_pred cCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHH
Confidence 35678999999999999999999999999999999999999999999999999999999999987732 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
+|++.|++|++++++.|++||++||+++||+++|+||||.|.++++|+|.+||++|||||+.+||+|||.|+|+|||+||
T Consensus 124 ~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev 203 (1052)
T PRK14900 124 AFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEV 203 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeH
Q psy15223 599 EYKK-KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677 (2492)
Q Consensus 599 ey~~-~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 677 (2492)
+|++ +.+.++||+|++.+. +.+++||||||||||||+||||||+++
T Consensus 204 ~~~e~~~~~~~~i~f~l~~~---------------~~~l~vaTTrPeTl~~~~avaV~P~~~------------------ 250 (1052)
T PRK14900 204 EHEEAHQGELWSFAYPLADG---------------SGEIVVATTRPETMLGDTAVAVHPLDP------------------ 250 (1052)
T ss_pred cccCCCCCeEEEEEEEecCC---------------CcEEEEEECchhhhhcceeEEECCCcH------------------
Confidence 9998 777888999998542 358999999999999999999999964
Q ss_pred HhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEec-CCcccCCCCccEEecCCCCHHHHHHHHHc
Q psy15223 678 NLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG-DYITVDSGTGIVHSAPAYGIEDFLIFKKQ 756 (2492)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~-~~V~~~~GTG~Vh~aPahg~~D~~~~~~~ 756 (2492)
+| ++|.|++|.|||. ++.+|||.+ +||++++|||+||++||||++||++|++|
T Consensus 251 --------~y------------~~L~G~~~~~Pl~------~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~ 304 (1052)
T PRK14900 251 --------RY------------MALHGKKVRHPIT------GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRH 304 (1052)
T ss_pred --------HH------------HHhcCCEEECCCC------CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHc
Confidence 22 3689999999998 889999964 48999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCC
Q psy15223 757 NMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDK 836 (2492)
Q Consensus 757 ~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~ 836 (2492)
|| +++++||++|+|++++|.|.|+++++||+.|++.|++.|.+++.+.|.|+||||||||+||++++++||||++++
T Consensus 305 ~L---~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~ 381 (1052)
T PRK14900 305 GL---EMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEP 381 (1052)
T ss_pred CC---CccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHH
Confidence 99 888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchhHHHHHHHHHHhhc--ceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHH
Q psy15223 837 IPKNEKKSLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914 (2492)
Q Consensus 837 ~~~~~~~~~~~~~~~~i~~--v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~ 914 (2492)
+++++++++++ ++|+|+..++++.+||++++||||||||+||||||+|||++ |++.+...
T Consensus 382 --------~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~-~~~~v~~~--------- 443 (1052)
T PRK14900 382 --------LARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD-GHVTVARE--------- 443 (1052)
T ss_pred --------HHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC-CcEEeccc---------
Confidence 99999999965 99999999999999999999999999999999999999976 33321100
Q ss_pred HhhcCCccccccCchhhcC-CCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHH
Q psy15223 915 IELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSL 990 (2492)
Q Consensus 915 ~~~~g~~~w~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l 990 (2492)
. ...++ ++...+.+++||||||||||++|++.+++.. ++++|||+|+|++|+||+|+||.+++
T Consensus 444 -----------~--~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l 510 (1052)
T PRK14900 444 -----------T--PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMM 510 (1052)
T ss_pred -----------c--cccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHH
Confidence 0 00111 2234588999999999999999998887543 23679999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHH
Q psy15223 991 LTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYR 1069 (2492)
Q Consensus 991 ~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~ 1069 (2492)
+.++.+.+..||++|++|||++|.+|+|||||+||+|+|.++|++||+|+|||||++ ++.++|++|+++.++...++++
T Consensus 511 ~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~n 590 (1052)
T PRK14900 511 MMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFAN 590 (1052)
T ss_pred HHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 5788999999999988889999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhh
Q psy15223 1070 RIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 1149 (2492)
Q Consensus 1070 kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kd 1149 (2492)
+|||+.||++.++.+|.+....+....+...|+|++++++.+++++.++|++|+|++|++.+++|+++++||+||+..|+
T Consensus 591 kl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~ 670 (1052)
T PRK14900 591 KLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKE 670 (1052)
T ss_pred HHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccH
Confidence 99999999988877775432222223456789999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHH
Q psy15223 1150 RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM 1229 (2492)
Q Consensus 1150 rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~ 1229 (2492)
++|++ +...+++++++|+++|+.++++|+|||||+|||||+.|+.........+||+++.||+.++ .+..+++.++
T Consensus 671 ~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~--~d~~~e~~~~ 746 (1052)
T PRK14900 671 ALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE--ADEAAEAAFR 746 (1052)
T ss_pred hhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc--ccHHHHHHHH
Confidence 99875 3455678899999999999999999999999999999974200001126999999998765 3455666666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcce----EEEEEe-CchhHHHHHH-hHHHHHHhhhccceEEe
Q psy15223 1230 ILKKIRSKVMQKLEKIRSTGIIGSSLQA----EIILKI-NKLDFEILNE-FGEELKFFLLTSSVSLF 1290 (2492)
Q Consensus 1230 ~~~~lr~~v~~~le~~R~~k~i~~s~~a----~v~i~~-~~~~~~~l~~-~~~~L~~l~~vs~v~i~ 1290 (2492)
.+.+ +...++.+|++..|+..... .+.|.. +.+..+.++. +...|..++++++|++.
T Consensus 747 ~v~~----ii~~iR~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~~~ 809 (1052)
T PRK14900 747 PVLG----IIDAVRNIRGEMGIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSRLV 809 (1052)
T ss_pred HHHH----HHHHHHHHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeEee
Confidence 6664 44556678998888765443 455533 4445566777 77889999998887763
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-141 Score=1456.93 Aligned_cols=775 Identities=25% Similarity=0.415 Sum_probs=685.9
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
++++++++|++||++|+++++|++..+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|+||||
T Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 8 KKYDPEELEEKWQKIWEEEGTYKFDPD--ERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccccc--cCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 468899999999999999999987532 357899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1648 CHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
|||+|||.+|+|++|. .+++++|++.|++|+.++++.|++||++||+++||+++|+|+||.|+++++|+|.+|+++|
T Consensus 86 ~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~G 165 (800)
T PRK13208 86 DNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKG 165 (800)
T ss_pred CCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 9999999999997775 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEE
Q psy15223 1725 YVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804 (2492)
Q Consensus 1725 liyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v 1804 (2492)
|||++.++|+|||.|+|+|||+||+|++..++++||+|++.+ +.+++||||||||||||+||||
T Consensus 166 liy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~----------------~~~l~v~TtrPeTl~g~~ai~v 229 (800)
T PRK13208 166 LIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED----------------GEEIEIATTRPELLPACVAVVV 229 (800)
T ss_pred CeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC----------------CCEEEEEeCCcchhhhCeEEEE
Confidence 999999999999999999999999999999999999999752 2489999999999999999999
Q ss_pred cCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCC
Q psy15223 1805 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS 1884 (2492)
Q Consensus 1805 ~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~ 1884 (2492)
||+++ +|. +|.|++|.||++ ++++||++++||++++
T Consensus 230 ~p~~~--------------------------~~~------------~l~g~~~~~P~~------~~~ipii~~~~V~~~~ 265 (800)
T PRK13208 230 HPDDE--------------------------RYK------------HLVGKTAIVPLF------GVEVPILADPLVDPDF 265 (800)
T ss_pred CCCch--------------------------HHH------------HhcCCEEEcCCC------CCcceEECCCccCCCC
Confidence 99952 121 688999999998 8899999999999999
Q ss_pred CCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccc
Q psy15223 1885 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 1964 (2492)
Q Consensus 1885 GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~ 1964 (2492)
|||+||++|+||++||+++++||| ++++++|++|+|++++|.|+|+++++|++.|++.|+++|.+++.+++.|+||+
T Consensus 266 GTG~V~~~p~hd~~D~~~~~~~~l---~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~ 342 (800)
T PRK13208 266 GTGAVMICTFGDKTDVTWWRELNL---PTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKF 342 (800)
T ss_pred CcceEEeCCCCCHHHHHHHHHcCC---CcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCc
Confidence 999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCC-CcccccccCCCceeeEEE
Q psy15223 1965 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP-DWTISRQRHWGVPIAFFI 2043 (2492)
Q Consensus 1965 ~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~-DW~ISRqr~WG~pIP~~~ 2043 (2492)
|||||+||++++++||||++++ |++++++++++++|+|++.++++.+||++++ ||||||||+||||||+|+
T Consensus 343 ~~r~~~~v~~~~~~qwfl~~~~--------~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~ 414 (800)
T PRK13208 343 CERCDTPLEILVTRQWFIKVLD--------LKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWY 414 (800)
T ss_pred cCCCCCEEEEeccceeeEeCHH--------HHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEE
Confidence 9999999999999999999988 9999999999999999999999999999977 999999999999999999
Q ss_pred ECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC-CccCceecccccccccccCcchhhhccCC---ccccCC
Q psy15223 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGITHQTVIRGS---HKKQLI 2119 (2492)
Q Consensus 2044 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~-~~~~~~~~~dvlDvWfdSg~~~~~~~~~~---~~~~~~ 2119 (2492)
|++||.+.+.+++-+ ..+.|.+......++. +...+.+++||||||||||++|+++++.. ..++.|
T Consensus 415 ~~~~g~~~~~~~~~l----------~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~ 484 (800)
T PRK13208 415 CKDCGHPILPDEEDL----------PVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKV 484 (800)
T ss_pred eCCCCCeecCchhhh----------ccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhc
Confidence 999987643211100 0122322211111111 12468999999999999999998877532 234678
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
||+|++++|+||++|||.++++.+.++.+..||+++++||+++|.+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 485 ~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~ 564 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASAR 564 (800)
T ss_pred CCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 2279 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~ 2279 (2492)
+++|++|+++.+..+.+.+++|||+++++.. +.+ . ............|+|++++++.+++++.++|++|+|++|++
T Consensus 565 ~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~-~--~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~ 640 (800)
T PRK13208 565 LGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSA-D--PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALE 640 (800)
T ss_pred CCCCceecHHHHHHHHHHHHHHHHHHHHHHh-ccc-c--cccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999863 222 0 00111234567899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeee
Q psy15223 2280 KLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFT 2359 (2492)
Q Consensus 2280 ~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~ 2359 (2492)
.+++|+++++||+||+.+|+|+|....+ ..+.+++.+++++++.+++||+|||||+|||||+.|+ . +||+.
T Consensus 641 ~i~~f~~~~~~n~Yie~~k~~~~~~~~~-~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~-------~si~~ 711 (800)
T PRK13208 641 EIESFFWHVFCDDYLELVKSRAYGEDEE-EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G-------GSVHR 711 (800)
T ss_pred HHHHHHHHHhhHHHHHHhhHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C-------CceEe
Confidence 9999998889999999999999875432 2367889999999999999999999999999999997 3 48999
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEE-EEEeChhhHHHHHHhHHHHHHhhhcccEE
Q psy15223 2360 QLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEI-ILKINKLDFEILNEFGEELKFFLLTSSVS 2438 (2492)
Q Consensus 2360 ~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v-~i~~~~~~~~~l~~~~~~L~~l~~vs~v~ 2438 (2492)
+.||+.++...++.++..++.+. .++..+|++|++.+++...+..+ ++..+.+ .+.++.+.+.|+++++|++|.
T Consensus 712 ~~wP~~~~~~~~~~~~~~~~~v~----~ii~~iR~~r~~~~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~ 786 (800)
T PRK13208 712 ASWPEPDEELIDEEDEELGELAK----EILSAVRKYKSEAGLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELE 786 (800)
T ss_pred ccCCCCCcccccHHHHHHHHHHH----HHHHHHHHHHHHcCCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEE
Confidence 99999876666666666666554 47778888898888876665543 3444445 778888889999999999999
Q ss_pred EeecC
Q psy15223 2439 LFQIK 2443 (2492)
Q Consensus 2439 i~~~~ 2443 (2492)
+....
T Consensus 787 ~~~~~ 791 (800)
T PRK13208 787 LVEGD 791 (800)
T ss_pred EecCC
Confidence 97653
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-139 Score=1452.28 Aligned_cols=744 Identities=27% Similarity=0.449 Sum_probs=666.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEI 520 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e~ 520 (2492)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||+|||.+|+|.++. ++++++|
T Consensus 30 ~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f 109 (861)
T TIGR00422 30 SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEF 109 (861)
T ss_pred cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999998754 4678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
+++|++|++++.+.+++||++||+|+||+++|+||||.|.++++|+|.+||++|||||+.++|+|||.|+|+||++||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~ 189 (861)
T TIGR00422 110 REKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEY 189 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhH
Q psy15223 601 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLV 680 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~ 680 (2492)
++..++++|++|++.+. .+.+++||||||||||||+||||||+++
T Consensus 190 ~~~~~~~~~i~f~~~~~--------------~~~~l~vaTtrPeTl~~~~av~V~P~~~--------------------- 234 (861)
T TIGR00422 190 KEVKGKLYYIRYPLANG--------------SKDYLVVATTRPETMFGDTAVAVHPEDE--------------------- 234 (861)
T ss_pred ccccceEEEEEEEecCC--------------CCCEEEEEeCCcchhhhCeEEEECCCch---------------------
Confidence 99999999999999642 2369999999999999999999999954
Q ss_pred HHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCC
Q psy15223 681 KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKD 760 (2492)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~ 760 (2492)
+| ++|+|++|.||++ ++++|||+++||++++|||+||+|||||++||+++++|||
T Consensus 235 -----ry------------~~l~g~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-- 289 (861)
T TIGR00422 235 -----RY------------KHLIGKKVILPLT------GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNL-- 289 (861)
T ss_pred -----HH------------HHhcCCEEEcCCC------CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCC--
Confidence 22 4689999999999 8899999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcc
Q psy15223 761 SDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN 840 (2492)
Q Consensus 761 ~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~ 840 (2492)
++++++|++|+|++++|.|+|+++++||+.|++.|+++|.|++.++++|+||||||||+||++++++||||++++
T Consensus 290 -~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~---- 364 (861)
T TIGR00422 290 -EFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEK---- 364 (861)
T ss_pred -CccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHH----
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhc
Q psy15223 841 EKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELN 918 (2492)
Q Consensus 841 ~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 918 (2492)
++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|+|++||++.+.... .+... ..
T Consensus 365 ----~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~-~~~~~----~~ 435 (861)
T TIGR00422 365 ----LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEE-PLPDD----KT 435 (861)
T ss_pred ----HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccch-HHhhh----hh
Confidence 9999999997 6999999999999999999999999999999999999999999876522111 11000 00
Q ss_pred CCccccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHH
Q psy15223 919 GIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSII 995 (2492)
Q Consensus 919 g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~ 995 (2492)
..+ ....+.+++||||||||||+++++.+++.. +++++||+|++++|+||+|||+.++++.+.+
T Consensus 436 ------------~~~-~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~ 502 (861)
T TIGR00422 436 ------------NTG-PSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLA 502 (861)
T ss_pred ------------ccC-CcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHH
Confidence 011 124689999999999999999999987643 2367999999999999999999999999999
Q ss_pred hcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHH
Q psy15223 996 LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNT 1074 (2492)
Q Consensus 996 ~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~ 1074 (2492)
+.+..||++|++|||++|.+|+|||||+||+|+|.+++++||+|++|||+++. +.++|++|+++.+....+++++|||+
T Consensus 503 ~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~ 582 (861)
T TIGR00422 503 LTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNA 582 (861)
T ss_pred hcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999975 45899999999999999999999999
Q ss_pred HHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccc
Q psy15223 1075 LRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTT 1154 (2492)
Q Consensus 1075 ~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~ 1154 (2492)
.||+..++..+... ..........|+|++++++.+++++.++|++|+|+.|++.+++|+++++||+|++.+|+|+|++
T Consensus 583 ~rf~~~~~~~~~~~--~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~ 660 (861)
T TIGR00422 583 SRFVLMNLSDDLEL--SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNG 660 (861)
T ss_pred HHHHHhcccccccc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 99998876654210 0111235678999999999999999999999999999999999998999999999999999864
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHH
Q psy15223 1155 KKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKI 1234 (2492)
Q Consensus 1155 ~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~l 1234 (2492)
. ..++++++.+|+++++.++++|+|||||+|||||+.|+.. .+||+++.||+..+.+.+.++++.++.++++
T Consensus 661 ~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~------~~si~~~~~P~~~~~~~d~~~e~~~~~l~~i 732 (861)
T TIGR00422 661 N--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG------ADSIMLQSYPVVDAEFVDEEAEKAFELLKEI 732 (861)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc------CCceeecCCCCcccccCCHHHHHHHHHHHHH
Confidence 3 4567889999999999999999999999999999999753 3699999999987666677777778777754
Q ss_pred HHHHHHHHHHHHhhCCCCCCcceEEEEEe-CchhHHHHHHhHHHHHHhhhccceEEee
Q psy15223 1235 RSKVMQKLEKIRSTGIIGSSLQAEIILKI-NKLDFEILNEFGEELKFFLLTSSVSLFQ 1291 (2492)
Q Consensus 1235 r~~v~~~le~~R~~k~i~~s~~a~v~i~~-~~~~~~~l~~~~~~L~~l~~vs~v~i~~ 1291 (2492)
. ..++.+|++..|+......+.+.. +.+..+.++.+.+.|..++++++|++..
T Consensus 733 i----~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~ 786 (861)
T TIGR00422 733 I----VSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVI 786 (861)
T ss_pred H----HHHHHHHHHcCCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCceEeec
Confidence 4 455678999888876666555543 3445577888889999999999998854
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-138 Score=1429.24 Aligned_cols=747 Identities=26% Similarity=0.415 Sum_probs=659.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---CCCHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKA 524 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---~~~~~e~~~~~ 524 (2492)
++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|++.+|. .+++++|++.|
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~ 115 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELC 115 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999997765 57789999999
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccccee
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY 604 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~ 604 (2492)
++|++++++.|+++|++||+++||+++|+||||.|+++++|+|.+|+++|||||+.++|+|||.|+|+|||+||+|.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~ 195 (800)
T PRK13208 116 RELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE 195 (800)
T ss_pred HHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHH
Q psy15223 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 684 (2492)
Q Consensus 605 ~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 684 (2492)
++++||+|++.+ +.+++||||||||||||+||||||+++
T Consensus 196 ~~~~~ikf~~~~----------------~~~l~v~TtrPeTl~g~~ai~v~p~~~------------------------- 234 (800)
T PRK13208 196 GKLNYIKFPVED----------------GEEIEIATTRPELLPACVAVVVHPDDE------------------------- 234 (800)
T ss_pred ceEEEEEEEecC----------------CCEEEEEeCCcchhhhCeEEEECCCch-------------------------
Confidence 999999999853 248999999999999999999999953
Q ss_pred HHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcc
Q psy15223 685 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 764 (2492)
Q Consensus 685 ~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~ 764 (2492)
++ ++|.|+++.||++ ++++|||+++||++++|||+||++|+||++||+++++||| +++
T Consensus 235 -~~------------~~l~g~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l---~~~ 292 (800)
T PRK13208 235 -RY------------KHLVGKTAIVPLF------GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNL---PTR 292 (800)
T ss_pred -HH------------HHhcCCEEEcCCC------CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCC---Ccc
Confidence 12 3689999999998 8899999999999999999999999999999999999999 888
Q ss_pred cccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 765 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 844 (2492)
Q Consensus 765 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~ 844 (2492)
+++|++|+|++++|.|+|+++++|++.|++.|+++|.+++.+++.|+||+|||||+||++++++|||+++++
T Consensus 293 ~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~-------- 364 (800)
T PRK13208 293 IIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLD-------- 364 (800)
T ss_pred cccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhcceEecchhhHHHHHHHhcCC-CeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccc
Q psy15223 845 LRESAITAINKIKFFPSWGKDRLKSMILNRP-DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923 (2492)
Q Consensus 845 ~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~-DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 923 (2492)
+++++++++++++|+|++.++++.+||++++ ||||||||+||+|||+|+|++||..++...+.+ ..+.|
T Consensus 365 ~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l----------~~~~~ 434 (800)
T PRK13208 365 LKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDL----------PVDPT 434 (800)
T ss_pred HHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhh----------ccCch
Confidence 9999999999999999999999999999976 999999999999999999999997652211100 11233
Q ss_pred cccCchhhcC-CCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhcCC
Q psy15223 924 QNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 999 (2492)
Q Consensus 924 ~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~ 999 (2492)
.+......++ ++...+++++||||||||||++++++++... .+++|||+|++++|+||+||||.++++.+.++.+.
T Consensus 435 ~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~ 514 (800)
T PRK13208 435 KDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGK 514 (800)
T ss_pred hhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCC
Confidence 2222211111 1224689999999999999999988776432 23679999999999999999999999999999999
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLL 1079 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l 1079 (2492)
.||+++++|||++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++|+++.+..+.+.+++|+|++||++
T Consensus 515 ~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~ 594 (800)
T PRK13208 515 LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVL 594 (800)
T ss_pred CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999987
Q ss_pred hcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChH
Q psy15223 1080 ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSH 1159 (2492)
Q Consensus 1080 ~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~ 1159 (2492)
. +.+ . ........+...|+|++++++.+++++.++|++|+|++|++.+++|+++++||+|++.+|+|+|.+..+ .
T Consensus 595 ~-~~~-~--~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~-~ 669 (800)
T PRK13208 595 H-FSA-D--PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEE-E 669 (800)
T ss_pred h-ccc-c--cccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCc-H
Confidence 3 322 0 001112345678999999999999999999999999999999999998899999999999999976433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHH
Q psy15223 1160 ARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVM 1239 (2492)
Q Consensus 1160 ~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~ 1239 (2492)
.+++++++++++++.++++|+|||||+|||||+.|+ . +||+++.||+.++...+..+++.++.+.++..
T Consensus 670 ~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~-------~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~--- 738 (800)
T PRK13208 670 EQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G-------GSVHRASWPEPDEELIDEEDEELGELAKEILS--- 738 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C-------CceEeccCCCCCcccccHHHHHHHHHHHHHHH---
Confidence 367899999999999999999999999999999997 3 59999999997655545556666776665444
Q ss_pred HHHHHHHhhCCCCCCcceEE-EEEeCchhHHHHHHhHHHHHHhhhccceEEeecC
Q psy15223 1240 QKLEKIRSTGIIGSSLQAEI-ILKINKLDFEILNEFGEELKFFLLTSSVSLFQIK 1293 (2492)
Q Consensus 1240 ~~le~~R~~k~i~~s~~a~v-~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~ 1293 (2492)
.++.+|++.+++......+ .+..+.+ .+.++.+.+.|+++++|++|++....
T Consensus 739 -~iR~~r~~~~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~~ 791 (800)
T PRK13208 739 -AVRKYKSEAGLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELELVEGD 791 (800)
T ss_pred -HHHHHHHHcCCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEEEecCC
Confidence 4445677666654444332 3344445 77888888999999999999987543
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-134 Score=1402.62 Aligned_cols=788 Identities=18% Similarity=0.214 Sum_probs=633.4
Q ss_pred hhccccCCCCchhHHHhhhcccchhccccc--CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKAS--INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVP 1644 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~--~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~ 1644 (2492)
.+++++.++|++||++|+++++|++..+.+ .++++|++|+|||||||.|||||++|++++||++||+||+||+|+|||
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 578899999999999999999999865422 245889999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHHh------c-------------------------cCCCHHHHHHHHHHHHHH-------------
Q psy15223 1645 GYDCHGMPIEIQIEKLY------G-------------------------KNLSPIEIQNKARALAYE------------- 1680 (2492)
Q Consensus 1645 G~D~hGlPie~~a~k~~------~-------------------------~~~~~~e~~~~~~~~~~~------------- 1680 (2492)
||||||||||.+|+|.. | .+.++.+|+++|++++.+
T Consensus 90 G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~ 169 (1084)
T PLN02959 90 AFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRS 169 (1084)
T ss_pred CcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 99999999999998853 2 134578899999999866
Q ss_pred ----------------HH----HHHHHHHHHhcccccccCeeccCC--hHHHHHHHHHHHHHHhCCceEEeCcccccCCC
Q psy15223 1681 ----------------KI----EQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 1738 (2492)
Q Consensus 1681 ----------------~i----~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~ 1738 (2492)
++ ..|+++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||+|.+||+|||.
T Consensus 170 ~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~ 249 (1084)
T PLN02959 170 FGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPL 249 (1084)
T ss_pred cCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCC
Confidence 33 778999999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccccccccceeeecceEEE--EEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEec
Q psy15223 1739 CKSALAEAEIEYKKKYDFSIYV--GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 1816 (2492)
Q Consensus 1739 ~~t~Lad~Evey~~~~~~~~yv--~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~ 1816 (2492)
|+|+|||||++|++..+++.|+ +|++.++. ...+.. ..+++.++++|||||||||||+||||||+.+|++++++
T Consensus 250 ~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~--~~~~~~--~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~ 325 (1084)
T PLN02959 250 DGQPCADHDRASGEGVGPQEYVLIKMEVLPPF--PGKLKA--LEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIN 325 (1084)
T ss_pred CCCCchhhHHhcCCCCCcceeEEEEEeecCcc--hhhhhh--cCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEec
Confidence 9999999999999999999994 57765531 111110 01245799999999999999999999999999999987
Q ss_pred CCCCceehhhHHhHHHH-H-HHcCCc-CceE-EEEecccccccEEeCCCCccccCCCce-ecEEecCccccCCCCceEEc
Q psy15223 1817 NDPPLLLILAFNLVKSC-L-KKFGFK-GNII-GICKGIKLSKINFFHPLSNIDINYNRL-SPIYLGDYITVDSGTGIVHS 1891 (2492)
Q Consensus 1817 ~~~~~~~i~a~~~~~~~-~-~~~~~~-~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~-~pi~~~~~V~~~~GTG~V~~ 1891 (2492)
+ ++.+|+++++++++ + ...+.. ...+ .+++|++|+|++|.||++ +++ +||++++||++++|||+||+
T Consensus 326 ~--~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~------~~~~i~ilp~~~V~~~~GTGvV~~ 397 (1084)
T PLN02959 326 D--TEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLA------FNEVIYALPMLTILTDKGTGVVTS 397 (1084)
T ss_pred C--CeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCC------CCcceeEeceEEEeCCCCeeeEEe
Confidence 4 37899999988864 2 221221 2334 999999999999999998 655 89999999999999999999
Q ss_pred CCCCChhhHHH----------HHHcCCCCC-----CcccccCCCCc----------------------------------
Q psy15223 1892 APAYGIEDFLI----------FKKQNMKDS-----DIINPVMDDGN---------------------------------- 1922 (2492)
Q Consensus 1892 ~Pahg~~D~~~----------~~~~~l~~~-----~~~~~vd~~G~---------------------------------- 1922 (2492)
|||||++||.+ +++|||++. +++++||.+|.
T Consensus 398 vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~ 477 (1084)
T PLN02959 398 VPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKG 477 (1084)
T ss_pred CCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhc
Confidence 99999999998 578898432 34667676553
Q ss_pred cccC---CCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 1923 FIST---LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 1999 (2492)
Q Consensus 1923 ~~~~---~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~ 1999 (2492)
|++. +|.|+|++|++||+.|++.|+++|.++...+. ..|+|||||+||++++++||||++++ +.||+++
T Consensus 478 f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep--~~pv~~R~g~~~~v~l~~QWFi~~~~------~~~k~~a 549 (1084)
T PLN02959 478 FTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP--EKKVMSRSGDECVVALTDQWYLTYGE------EEWKKKA 549 (1084)
T ss_pred cccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc--CCCeEECCCCEEEEeecCCeeEECCc------hHHHHHH
Confidence 4433 68899999999999999999999988753331 36899999999999999999999986 3499999
Q ss_pred HHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEE----CC-CCcccCCcHHHHHHHHHHHhhcCccccc
Q psy15223 2000 ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH----KK-SGKLHPKTLELIELIAKKIELNGIEIWQ 2074 (2492)
Q Consensus 2000 ~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~----~~-~~~~~~~~~~~~~~i~~~~~~~g~~~w~ 2074 (2492)
++++++|+|+|++++++|.+||+|++||||||||+|||||| |++ +. ++..+......+.++.+.....|.+.|
T Consensus 550 ~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~- 627 (1084)
T PLN02959 550 EKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKS- 627 (1084)
T ss_pred HHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhhhccCCccc-
Confidence 99999999999999999999999999999999999999999 432 11 111111122334555544444455555
Q ss_pred ccchhhhcCCCccCceecccccccccccCcchhhh------c-cCCccccCCcCceeeecccchhhhhHHHHHHHHHHhc
Q psy15223 2075 NLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTV------I-RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN 2147 (2492)
Q Consensus 2075 ~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~------~-~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~ 2147 (2492)
...++ . -..||+|+||+||.++++. + ..+.++++|||+|++++|+||+++||.++++.+.+++
T Consensus 628 ~i~~~--------~--~~~dV~D~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~ 697 (1084)
T PLN02959 628 SIKPE--------Q--MTDEVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIW 697 (1084)
T ss_pred cCChh--------h--cCccceeEeecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhc
Confidence 22221 1 1578999999999876543 1 1134457799999999999999999999999999999
Q ss_pred CCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHHHHHHHHHHHHHHHH
Q psy15223 2148 KSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTL 2225 (2492)
Q Consensus 2148 ~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~ 2225 (2492)
++.|| +.+++||+|+ .+|+|||||+||+|+|.++|++||||++|||++++ +..+|.+|+++.++. ...+++|.+
T Consensus 698 ~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~ 773 (1084)
T PLN02959 698 AEEHWPRGFRCNGHLM-LNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEI 773 (1084)
T ss_pred CCCCCCceEEEccEEe-cCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHH
Confidence 99999 5799999999 99999999999999999999999999999999964 788999999988764 455677777
Q ss_pred HHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH-HHhhhh--hhc
Q psy15223 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY-LDILKD--RLY 2302 (2492)
Q Consensus 2226 r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y-le~~K~--~l~ 2302 (2492)
+|+..++.... .......+...|+|++++++.++++++++|++|+|++|++. .|| |+..|+ |+|
T Consensus 774 ~~~~~~~~~~~---~~~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~----------~~Yel~~~k~~yr~~ 840 (1084)
T PLN02959 774 AWMEEVLAAES---SLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKS----------GFYDLQAARDEYRLS 840 (1084)
T ss_pred HHHHHhhhhhc---ccCCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHhHHHHhhc
Confidence 77655432100 00011224678999999999999999999999999999994 356 777777 777
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHH---
Q psy15223 2303 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYM--- 2379 (2492)
Q Consensus 2303 ~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~--- 2379 (2492)
+... ..++.+|++++..+++||||||||+|||||+.|.+. .+||+++.||..+. .+..++..++
T Consensus 841 ~~~~-----~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~------~~sI~~~~wP~~~~--~d~~~e~~~~~l~ 907 (1084)
T PLN02959 841 CGSG-----GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK------EGFAVTAGWPVAGE--PDLTLKRANKYLQ 907 (1084)
T ss_pred cccc-----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC------CCeEEecCCCCCCc--cCHHHHHHHHHHH
Confidence 6421 146789999999999999999999999999999532 36999999998763 2455554444
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCCCC-----ceeEEEEEeChh
Q psy15223 2380 -ILKKIRSKVMQKLEKIRSTGIIGSS-----LQAEIILKINKL 2416 (2492)
Q Consensus 2380 -~~~~~r~~v~~~i~~~R~~~~i~~~-----~~~~v~i~~~~~ 2416 (2492)
.+..+|..+.......|.++..+.+ ....++|+++.+
T Consensus 908 ~~i~~iR~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~IyVA~~ 950 (1084)
T PLN02959 908 DSIVSFRKLLQKQLAGSKKAKKGGAPVTLPEKKLAGLIYVAEK 950 (1084)
T ss_pred HHHHHHHHhHHHhchhhhhcCCCCCCcccccCcceEEEEECCC
Confidence 3444555555555555554443322 123477777554
|
|
| >KOG0434|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-136 Score=1220.79 Aligned_cols=825 Identities=26% Similarity=0.417 Sum_probs=716.3
Q ss_pred ccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-----
Q psy15223 440 WGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK----- 513 (2492)
Q Consensus 440 y~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~----- 513 (2492)
|..+. ..+++|+|.+.||||+|+|-+|.||.+.-|+||++.||..|+||.|-..+||||||||+|..+.|.+|.
T Consensus 27 F~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~d 106 (1070)
T KOG0434|consen 27 FHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDD 106 (1070)
T ss_pred HHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHH
Confidence 44444 467899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCc
Q psy15223 514 --NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 591 (2492)
Q Consensus 514 --~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~t 591 (2492)
.++..++.++||..+.+|..++++...|||-|+|+++-|.||+|.|.+.+||+|++|++||+||||.|..+||..|.|
T Consensus 107 V~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~T 186 (1070)
T KOG0434|consen 107 VMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTT 186 (1070)
T ss_pred HHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCC
Confidence 577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc--ccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCC
Q psy15223 592 ALAEAE--IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669 (2492)
Q Consensus 592 aLae~E--vey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~ 669 (2492)
+||+-| -.|+|..+|+++|.||+.+. ..+.++.|||||||||+|.|+||||++.|+.++... .
T Consensus 187 PLSNFEa~QNYKdV~DPav~v~F~li~~--------------~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~-~ 251 (1070)
T KOG0434|consen 187 PLSNFEAQQNYKDVPDPAVFVAFPLIGD--------------PNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKT-T 251 (1070)
T ss_pred cccchhcccCcccCCCCeEEEEeeccCC--------------cceeEEEEecCCccCccceeEEEcCCeEEEEEEecc-C
Confidence 999655 47999999999999999764 257899999999999999999999999999998754 4
Q ss_pred CceeeeeHHhHHHHHHHcCCcCcEE-EEEecccccCCEEecCCcccc-cCCCceecEEecCCcccCCCCccEEecCCCCH
Q psy15223 670 PLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNID-INYNRLSPIYLGDYITVDSGTGIVHSAPAYGI 747 (2492)
Q Consensus 670 ~~~~i~a~~~~~~~~~~~~~~~~~~-~~~~G~~l~g~~~~~P~~~~~-~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~ 747 (2492)
+..||+.++++..+.+.-.-++++| ..++|++|.|++|..+|-... ........|+.++||+.+.|||+||+||++|+
T Consensus 252 ~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe 331 (1070)
T KOG0434|consen 252 GKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGE 331 (1070)
T ss_pred CeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccCh
Confidence 5889999999998876554455555 899999999999987663211 22356789999999999999999999999999
Q ss_pred HHHHHHHHcCCCCC--CcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe
Q psy15223 748 EDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR 825 (2492)
Q Consensus 748 ~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r 825 (2492)
+||.+|...|+..+ -+.||||++|+||.+.++|+|..|.||.+.||+.|++.|.|+....+.||||+||||.+|+|||
T Consensus 332 ~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYr 411 (1070)
T KOG0434|consen 332 EDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYR 411 (1070)
T ss_pred hhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHh
Confidence 99999999998654 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhh-HHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCc
Q psy15223 826 TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGK-DRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKT 904 (2492)
Q Consensus 826 ~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~-~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~ 904 (2492)
+.|.||+++.+ +.+++++...+..|+|+..+ +|+.|||++.+||.|||+|+||+|||+|+.++..+++
T Consensus 412 aVPsWFVrVk~--------~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevV--- 480 (1070)
T KOG0434|consen 412 AVPSWFVRVKN--------IVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVV--- 480 (1070)
T ss_pred hccHhhhhHHH--------HHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEE---
Confidence 99999999988 99999999999999999764 8999999999999999999999999999998876665
Q ss_pred HHHHHHHHHHHhhcCCccccccCchhh----cC--CCccCceecCCccccccccccccchhcccCcc----ccCCcCeee
Q psy15223 905 LELIELIAKKIELNGIEIWQNLDIKEF----LG--DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK----KQLIFPADL 974 (2492)
Q Consensus 905 ~~~i~~~~~~~~~~g~~~w~~~~~~~~----~~--~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~----~~~~~p~Dl 974 (2492)
.+.++.++.+..|.. -.+++-+.. +| .+.+.+.|.++|+|+||+||++|++...++.+ ++..||+|+
T Consensus 481 --cigSi~eLEeLSG~k-ItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadF 557 (1070)
T KOG0434|consen 481 --CIGSIKELEELSGVK-ITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADF 557 (1070)
T ss_pred --EeccHHHHHHhcCCc-chhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHh
Confidence 456677777777755 223322211 23 24578999999999999999999998766543 367899999
Q ss_pred eecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc--cc
Q psy15223 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY--SK 1052 (2492)
Q Consensus 975 ~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~--~~ 1052 (2492)
.-||.||.||||+..+..+.++++++||++|+++|+|+.++|+|||||+.|+-+|..|+++||||+||+||.+++. ..
T Consensus 558 IaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE 637 (1070)
T KOG0434|consen 558 IAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAE 637 (1070)
T ss_pred hhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 36
Q ss_pred ccccCHHHHHHHH-HHHHHHHHHHHHHhhcCCC--------CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 1053 DLSISNEILNRVV-ETYRRIRNTLRFLLANTSD--------FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE 1123 (2492)
Q Consensus 1053 d~~fs~~~l~~~~-~~~~kl~n~~rf~l~~l~~--------~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~ 1123 (2492)
.+.|.++.++++. +.+.-++|.+||+.+|... |++.. .+. ..+.+|+||++..++++.-+++-|++|+
T Consensus 638 ~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~-~~~--S~NvmDrWI~a~~qslv~fv~~eM~~Yr 714 (1070)
T KOG0434|consen 638 NLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDD-SVT--SSNVMDRWILASTQSLVGFVREEMDQYR 714 (1070)
T ss_pred ccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCcccccc-ccc--cchhHHHHHHHHHHHHHHHHHHHHHhee
Confidence 8999999988775 4566799999999887542 32221 122 3467999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCC---cc
Q psy15223 1124 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN---FY 1200 (2492)
Q Consensus 1124 f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~---~~ 1200 (2492)
+.+++-.+..|+ ++|+|||+.+.+.||..+. ...+--.|+.+|.++|.+++++|+||.||++|.+||.|.... .+
T Consensus 715 LytVvp~llkfi-D~LTNwYiR~nRrrlkGe~-G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~ 792 (1070)
T KOG0434|consen 715 LYTVVPRLLKFI-DELTNWYIRFNRRRLKGEN-GEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKN 792 (1070)
T ss_pred hhhhHHHHHHHH-HHhhhhheehhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCcccc
Confidence 999999999999 7899999999999997653 345567899999999999999999999999999999997421 01
Q ss_pred ccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCcceEEEEEeCchhHHHHHHhHHHH
Q psy15223 1201 IESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGI--IGSSLQAEIILKINKLDFEILNEFGEEL 1278 (2492)
Q Consensus 1201 ~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~--i~~s~~a~v~i~~~~~~~~~l~~~~~~L 1278 (2492)
.....|||...+|...+...++.++..++.++.+.+.++ ..|..+. ++.+++.-++|+.+++..+-+..+...+
T Consensus 793 ~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R----~iRern~islKtPLK~~ivi~~d~~~ledik~l~~yI 868 (1070)
T KOG0434|consen 793 EKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLAR----NIRERNTISLKTPLKELIVIHSDEEYLEDIKSLERYI 868 (1070)
T ss_pred CCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHH----HHhhccCCcccCchhheEEEcCCHHHHHHHHHHHHHH
Confidence 123579999999987777777777777777776665444 4565555 4678888888888888888888888888
Q ss_pred HHhhhccceEEeecCCCCceEEEE
Q psy15223 1279 KFFLLTSSVSLFQIKNLSEECIII 1302 (2492)
Q Consensus 1279 ~~l~~vs~v~i~~~~~~~~~~v~v 1302 (2492)
.+-++|.+|.+.+.+...++.+++
T Consensus 869 ~eElNVr~v~~~~d~~kyg~~lka 892 (1070)
T KOG0434|consen 869 LEELNVREVVFTSDEEKYGVVLKA 892 (1070)
T ss_pred HHhhcceeeeecccchhcceEEEe
Confidence 888999999887654322334443
|
|
| >KOG0434|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-136 Score=1220.49 Aligned_cols=848 Identities=26% Similarity=0.424 Sum_probs=741.6
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
..|+++-|+++.++|.+.+.|+.+.+..+++|+|.+.||||+|+|.+|.||.+.-|+||++.||..|+||.|-..+||||
T Consensus 7 n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~ 86 (1070)
T KOG0434|consen 7 NFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDT 86 (1070)
T ss_pred cCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccccc
Confidence 46889999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIF 1721 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~ 1721 (2492)
||||+|..++|.+|+ +++..++.++||..+.++...|++...|+|-|+|+++-|.||+|.|.+.|||+|++|+
T Consensus 87 HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~ 166 (1070)
T KOG0434|consen 87 HGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH 166 (1070)
T ss_pred CCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH
Confidence 999999999999987 6788999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEeCcccccCCCCCcccccccc--cceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccc
Q psy15223 1722 KKGYVYHGLKPVNWCFDCKSALAEAEI--EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPAN 1799 (2492)
Q Consensus 1722 ~kGliyr~~~~v~wcp~~~t~Lad~Ev--ey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~ 1799 (2492)
+||+||||.+..+||..|.|+||+-|- .|+|..+|+++|.|++.+. ..+.++.|||||||||+|
T Consensus 167 ~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~--------------~~~slvAWTTTPWTLPSN 232 (1070)
T KOG0434|consen 167 EKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGD--------------PNVSLVAWTTTPWTLPSN 232 (1070)
T ss_pred hcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCC--------------cceeEEEEecCCccCccc
Confidence 999999999999999999999998665 6999999999999998653 357899999999999999
Q ss_pred cEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCcccc-CCCceecEEec
Q psy15223 1800 QALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDI-NYNRLSPIYLG 1877 (2492)
Q Consensus 1800 ~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~-~~~~~~pi~~~ 1877 (2492)
.|+||||+..|++++..+ .++.||+.++++..+.+.-+..+++| ..+.|++|.|++|..+|-++.. .......|+.+
T Consensus 233 lal~Vnp~~~Yvki~dk~-~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d 311 (1070)
T KOG0434|consen 233 LALCVNPDFQYVKIKDKT-TGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSD 311 (1070)
T ss_pred eeEEEcCCeEEEEEEecc-CCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEecc
Confidence 999999999999998765 34789999999998877655566667 8999999999999988854433 23567899999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHcCCCCC--CcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCccee
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS--DIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNI 1955 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~--~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~ 1955 (2492)
+||+.+.|||+||+||+.|.+||.+|...|+..+ .+.||||++|+||.+.+.|+|..|+||.+.||+.|++.|.|+..
T Consensus 312 ~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~ 391 (1070)
T KOG0434|consen 312 DYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKA 391 (1070)
T ss_pred CcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeee
Confidence 9999999999999999999999999999998554 57899999999999999999999999999999999999999999
Q ss_pred eeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccch-hHHHHhhhCCCCcccccccC
Q psy15223 1956 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGK-DRLKSMILNRPDWTISRQRH 2034 (2492)
Q Consensus 1956 ~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~-~~~~~~l~~~~DW~ISRqr~ 2034 (2492)
..+.||||+||||.+|++||+.|.||+++++ +.+++++...+..|+|+..+ +||.|||++.+||.|||+|+
T Consensus 392 ~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~--------~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~ 463 (1070)
T KOG0434|consen 392 SQITHSYPFCWRSDTPLIYRAVPSWFVRVKN--------IVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRY 463 (1070)
T ss_pred eeeeeccCceecCCChHHHhhccHhhhhHHH--------HHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccc
Confidence 9999999999999999999999999999988 99999999999999999865 79999999999999999999
Q ss_pred CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccch---hhh-cC--CCccCceecccccccccccCcchhh
Q psy15223 2035 WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDI---KEF-LG--DDAVNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2035 WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~---~~~-~~--~~~~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
||||||+|..++.+++. .+.++.++-+..|.. -.+++- +.+ +| ++.+.+.|..+|+|+||+||.+|++
T Consensus 464 WGTPIpLWVSdD~eevV-----cigSi~eLEeLSG~k-ItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYA 537 (1070)
T KOG0434|consen 464 WGTPIPLWVSDDYEEVV-----CIGSIKELEELSGVK-ITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYA 537 (1070)
T ss_pred cCCCcceEEccCCceEE-----EeccHHHHHHhcCCc-chhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcch
Confidence 99999999999876643 344555555555543 112221 111 22 2346799999999999999999998
Q ss_pred hccCC----ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2109 VIRGS----HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2109 ~~~~~----~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
....+ ..++..||+|+..+|.||.||||+..+..+.++++++||++++++|+|+.++|+|||||+.|+-+|..+++
T Consensus 538 q~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin 617 (1070)
T KOG0434|consen 538 QRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN 617 (1070)
T ss_pred hhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH
Confidence 76432 33456699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhccCC--CCcccccHHHHHHHHH-HHHHHHHHHHHHHhcCCC--------CCCCcccccccccchHHHH
Q psy15223 2185 LFGAEILRLWVASTDY--SKDLSISNEILNRVVE-TYRRIRNTLRFLLANTSD--------FNPNINIIKISDMVEIDKY 2253 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s~~~--~~d~~fs~~~l~~~~~-~~~kl~n~~r~~~~~~~~--------~~~~~~~~~~~~~~~~D~~ 2253 (2492)
+||||+||+||.++|. .+.+.|.++.++++.. .+--+||.++|+.+|..- |.+.. ... ..+.+|+|
T Consensus 618 kYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~-~~~--S~NvmDrW 694 (1070)
T KOG0434|consen 618 KYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDD-SVT--SSNVMDRW 694 (1070)
T ss_pred hhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCcccccc-ccc--cchhHHHH
Confidence 9999999999998875 4789999999888654 556789999999887432 22221 111 34679999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2254 AIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 2333 (2492)
Q Consensus 2254 il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~ 2333 (2492)
|++..++++.-+++.|+.|++..++-.+..|+ ++|+|||+...+.|+.... ...+...|+.+|..+|.+++++|+||+
T Consensus 695 I~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~-G~~d~~~AL~~Lf~vL~t~~r~MaPfT 772 (1070)
T KOG0434|consen 695 ILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGEN-GEHDCHNALNVLFEVLFTLVRVMAPFT 772 (1070)
T ss_pred HHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHhhhhheehhhhhhcCCC-chHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999 7999999999999997653 345667889999999999999999999
Q ss_pred hHHHHHHHHHcccCCc---cccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceeE
Q psy15223 2334 SFTSEEAWSIFSDKNF---YIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGII--GSSLQAE 2408 (2492)
Q Consensus 2334 P~~aEelw~~L~~~~~---~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i--~~~~~~~ 2408 (2492)
||+||.+||+|..... ......|||...+|.+.+...++.++..++.++ .|....|.+|..+.| +.++..-
T Consensus 773 PF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~----siIdl~R~iRern~islKtPLK~~ 848 (1070)
T KOG0434|consen 773 PFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQ----SIIDLARNIRERNTISLKTPLKEL 848 (1070)
T ss_pred hHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccchHHHHHHHHH----HHHHHHHHHhhccCCcccCchhhe
Confidence 9999999999975311 124567999999999888888887777766554 466677888888865 5556666
Q ss_pred EEEEeChhhHHHHHHhHHHHHHhhhcccEEEeecCCCCceEEEEEe
Q psy15223 2409 IILKINKLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEECIIIKP 2454 (2492)
Q Consensus 2409 v~i~~~~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~~~~v~v~~ 2454 (2492)
++|..+++..+-+..+...+.+-+||.+|.+.+++...++.+++++
T Consensus 849 ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~d~~kyg~~lkaep 894 (1070)
T KOG0434|consen 849 IVIHSDEEYLEDIKSLERYILEELNVREVVFTSDEEKYGVVLKAEP 894 (1070)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhhcceeeeecccchhcceEEEecC
Confidence 7888788888888888888888899999999887765556555543
|
|
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-133 Score=1245.77 Aligned_cols=795 Identities=23% Similarity=0.364 Sum_probs=686.6
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+..++...+|..|+.+|++++.|++... ....+.|.+..|||+++|.||||||++.++.|.++||+||+||+|+|+||+
T Consensus 43 ~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~ 121 (995)
T KOG0432|consen 43 PAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGT 121 (995)
T ss_pred cccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCc
Confidence 3457788899999999999999987543 345689999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHH
Q psy15223 1647 DCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~ 1719 (2492)
||.|+.++..+||.+.. .+++++|.+++++|.+++...+.+|+++||.|+||+|+++||||...++|.+.|.+
T Consensus 122 DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvr 201 (995)
T KOG0432|consen 122 DHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVR 201 (995)
T ss_pred cccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHH
Confidence 99999999999998753 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCch---hhHhhhccCCCCCCccEEEEeecCcchh
Q psy15223 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPE---KIKSIFNLKNLPSGKGYIVIWTSTPWTI 1796 (2492)
Q Consensus 1720 L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~---~~~~~~~~~~~~~~~~~l~i~TT~P~Tl 1796 (2492)
||++|+|||+.+.|||||..+|++||.||+|.+..++.+ +..+-.+.. .+...|.+.. .+++..++|+|||||||
T Consensus 202 L~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~-l~vpGyd~~VeFG~L~~faY~v-~gs~~~i~VaTTRpET~ 279 (995)
T KOG0432|consen 202 LHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTL-LSVPGYDTKVEFGVLYSFAYPV-EGSDEEIVVATTRPETI 279 (995)
T ss_pred HHhcCceEecCceeeechhHHhhhhhheecceecCCCce-EecCCCCcceeeeeeeEEEEec-cCCCCeEEEecCCcccc
Confidence 999999999999999999999999999999988775432 111110000 0000011111 12345999999999999
Q ss_pred ccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEe
Q psy15223 1797 PANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876 (2492)
Q Consensus 1797 ~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~ 1876 (2492)
+|++||||||+++ ||+ .|.|+.++|||+ ++.+|||.
T Consensus 280 lGDvAvAVhP~D~--------------------------RYk------------~lhGk~~~hP~~------~r~lPiI~ 315 (995)
T KOG0432|consen 280 LGDVAVAVHPDDD--------------------------RYK------------HLHGKFVKHPFT------GRKLPIIC 315 (995)
T ss_pred ccceeEEeCCCCc--------------------------ccc------------cccCceeecCCC------CCccceee
Confidence 9999999999953 332 578999999999 99999999
Q ss_pred cCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceee
Q psy15223 1877 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1877 ~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~ 1956 (2492)
+.+|++++|||+|+++|||+++||+++++||| +++++++++|.+++.+|+|+||++++||++|++.|++.|++...+
T Consensus 316 D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L---~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~ 392 (995)
T KOG0432|consen 316 DIAVDMEFGTGAVKITPAHDPNDYEVGKRHNL---EFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE 392 (995)
T ss_pred cccccccccccceEecCCCChhHHHHHHhcCC---CceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccC
Q psy15223 1957 MFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRH 2034 (2492)
Q Consensus 1957 ~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~ 2034 (2492)
.++...|.|.|||+.|++.+.+|||+++++ +.++++++++ ++++.|+..++++..|+++.+|||||||.|
T Consensus 393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~e--------ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLW 464 (995)
T KOG0432|consen 393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKE--------MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLW 464 (995)
T ss_pred CCceeccccCCCCCcccccccchheeehHH--------HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhh
Confidence 999999999999999999999999999988 9999999998 799999999999999999999999999999
Q ss_pred CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc--------hhhhc-CCCccCceecccccccccccCcc
Q psy15223 2035 WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD--------IKEFL-GDDAVNYKKSNDTLDVWFDSGIT 2105 (2492)
Q Consensus 2035 WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~--------~~~~~-~~~~~~~~~~~dvlDvWfdSg~~ 2105 (2492)
|||+||+|+-.....- ...+.|.-.. +.+.. |.....+.+++|||||||+||++
T Consensus 465 WGHrIPAy~v~~~~~~-----------------~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~ 527 (995)
T KOG0432|consen 465 WGHRIPAYFVNLSDGR-----------------AEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLW 527 (995)
T ss_pred hccccceeeeecccCC-----------------CccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccc
Confidence 9999999876321100 0011222111 01122 22345678999999999999999
Q ss_pred hhhhccCCcc---ccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchh
Q psy15223 2106 HQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 2182 (2492)
Q Consensus 2106 ~~~~~~~~~~---~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~i 2182 (2492)
|++++++.++ ....||.++.-+|.|++++|+.+|++.++-++|+.||++|++||+|.|.+|+|||||+||||||.|+
T Consensus 528 PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDV 607 (995)
T KOG0432|consen 528 PFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDV 607 (995)
T ss_pred cchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHH
Confidence 9999987752 2556999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh------------------------------c-------cChhHHHHHHhcc-CCCCcccccHHHHHHHHHHHHHHHHH
Q psy15223 2183 CN------------------------------L-------FGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNT 2224 (2492)
Q Consensus 2183 i~------------------------------~-------yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~ 2224 (2492)
|+ . .|.|||||.|++. .-..|+++|-..+.....+.+||||+
T Consensus 608 I~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa 687 (995)
T KOG0432|consen 608 IDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNA 687 (995)
T ss_pred hccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHH
Confidence 97 2 4999999999974 56789999999999999999999999
Q ss_pred HHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcc
Q psy15223 2225 LRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYT 2303 (2492)
Q Consensus 2225 ~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~ 2303 (2492)
.||+++.+.+ |.|............+|+||+++|+..++.+.+.|+.|+|+.|..++++|+..+||+.|+|.+|+-+|.
T Consensus 688 ~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~ 767 (995)
T KOG0432|consen 688 TRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWG 767 (995)
T ss_pred HHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 9999987653 555432222222223999999999999999999999999999999999999999999999999999987
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHH
Q psy15223 2304 TKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKK 2383 (2492)
Q Consensus 2304 ~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~ 2383 (2492)
+. ...+..+..+|+.++...++||+|||||+|||+||+|+.... ....|++.++||.....+.|++++..++.+.+
T Consensus 768 ~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~--~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~ 843 (995)
T KOG0432|consen 768 DS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKG--SKPASISVSPYPSSNELWRNEELESAFELVLA 843 (995)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCC--CCCCceEecCCCchhcccCCHHHHHHHHHHHH
Confidence 53 456778899999999999999999999999999999987521 13458999999977788899999988887764
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceeEEEEEeC-hhhHHHHHHhHHHHHHhhhcccEEEeecCC
Q psy15223 2384 IRSKVMQKLEKIRSTGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLFQIKN 2444 (2492)
Q Consensus 2384 ~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~-~~~~~~l~~~~~~L~~l~~vs~v~i~~~~~ 2444 (2492)
+.+.+|++|+...+.++....+.+..+ +.....++.+.+.|..+.+++.|++....+
T Consensus 844 ----i~~~iRslra~y~l~~~~~~~v~~~~s~~~~~~~~~~~~~~i~~l~~~~~v~i~~~~~ 901 (995)
T KOG0432|consen 844 ----ITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISSPAE 901 (995)
T ss_pred ----HHHHHHHHHHhcCCCCCCceEEEEecCCCcchhHHHHHHHHHHHhhccceeEeccCCc
Confidence 778899999999998754555666543 333567788889999999999999998754
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-132 Score=1376.34 Aligned_cols=756 Identities=18% Similarity=0.213 Sum_probs=621.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh------C---------
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY------G--------- 512 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~------~--------- 512 (2492)
++++|++|+|||||||.||||||+|++++||++||+||+||+|+|+|||||||||||.+|+|.. |
T Consensus 43 ~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 4588999999999999999999999999999999999999999999999999999999998852 2
Q ss_pred ----------------cCCCHHHHHHHHHHHHHH-----------------------------HH----HHHHHHHHHcc
Q psy15223 513 ----------------KNLSPIEIQNKARALAYE-----------------------------KI----EQQKMDFMRLG 543 (2492)
Q Consensus 513 ----------------~~~~~~e~~~~~~~~a~~-----------------------------~i----~~~~~~~~~lG 543 (2492)
.+.++.+|+++|+++|.+ ++ ..|+++|+|||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 134578999999999876 33 77899999999
Q ss_pred ccccccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE--EEeecCCchh
Q psy15223 544 ILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY--VGFSFSEPEK 619 (2492)
Q Consensus 544 i~~Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y--v~f~~~~~~~ 619 (2492)
+++||+|+|.||| |.|+++++|+|.+|+++|+||||.+||+|||.|+|+|||+|++|.++.+++.| |+|++.+..
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~- 281 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPF- 281 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcc-
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999 458776531
Q ss_pred hhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH--HHHcCCc--CcEEE
Q psy15223 620 IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC--LKKFGFK--GNIIG 695 (2492)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~--~~~~~~~--~~~~~ 695 (2492)
...+. ...+++.+++||||||||||||+||||||+++|++++.++ ++.||+++++++++ +...+.. ..++.
T Consensus 282 -~~~~~--~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~--~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~ 356 (1084)
T PLN02959 282 -PGKLK--ALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIND--TEVFILTARAALNLAYQNFSKVPGKPTCLV 356 (1084)
T ss_pred -hhhhh--hcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecC--CeEEEEehhhhhhhHHhhhcccCCCcEEEE
Confidence 11111 0123468999999999999999999999999999999864 38999999998864 2222222 23559
Q ss_pred EEecccccCCEEecCCcccccCCCce-ecEEecCCcccCCCCccEEecCCCCHHHHHH----------HHHcCCCCC---
Q psy15223 696 ICKGIKLSKINFFHPLSNIDINYNRL-SPIYLGDYITVDSGTGIVHSAPAYGIEDFLI----------FKKQNMKDS--- 761 (2492)
Q Consensus 696 ~~~G~~l~g~~~~~P~~~~~~~~~~~-~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~----------~~~~~l~~~--- 761 (2492)
+++|++|+|++|.||+. +++ +||++++||++++|||+||+|||||++||.+ +++|||+.+
T Consensus 357 ~~~G~~L~G~~~~~Pl~------~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~ 430 (1084)
T PLN02959 357 ELTGYDLIGLPLKSPLA------FNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVL 430 (1084)
T ss_pred EEEHHHhCCCEEECCCC------CCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCccccc
Confidence 99999999999999998 555 8999999999999999999999999999998 688998432
Q ss_pred --CcccccCCCCc----------------------------------cccc---CCCCCCcchhhchHHHHHHHHhcCCe
Q psy15223 762 --DIINPVMDDGN----------------------------------FIST---LPLFGGMSIWKASKLICSYLKKSKTL 802 (2492)
Q Consensus 762 --~~~~~vd~~G~----------------------------------~~~~---~~~~~G~~v~~a~~~i~~~L~~~g~l 802 (2492)
+++++||.+|. |++. +|.|+|++|++||+.|++.|++.|.+
T Consensus 431 ~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l 510 (1084)
T PLN02959 431 PFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQA 510 (1084)
T ss_pred ccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCc
Confidence 44778787764 5544 58899999999999999999999988
Q ss_pred ee-eeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeec
Q psy15223 803 FN-IEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISR 881 (2492)
Q Consensus 803 ~~-~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISR 881 (2492)
+. .+. ..|+|||||+||++++++||||++++ +.||+++++++++|+|+|+++++++.+||+|++||||||
T Consensus 511 ~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~------~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSR 581 (1084)
T PLN02959 511 ILYSEP---EKKVMSRSGDECVVALTDQWYLTYGE------EEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSR 581 (1084)
T ss_pred eeeeEc---CCCeEECCCCEEEEeecCCeeEECCc------hHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecc
Confidence 75 443 36899999999999999999999985 349999999999999999999999999999999999999
Q ss_pred cccCCceeeEEEE----C-CCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCCCccCceecCCcccccccccccc
Q psy15223 882 QRHWGVPIAFFIH----K-KSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 956 (2492)
Q Consensus 882 qr~WGvpIP~~~~----~-~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~ 956 (2492)
||+|||||| |+| + .++..+......++++.+.....|.+.| ..+++ ++ +.||+|+||+||.++
T Consensus 582 Qr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~-~i~~~--------~~--~~dV~D~wF~Sg~~p 649 (1084)
T PLN02959 582 SFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKS-SIKPE--------QM--TDEVWDFVFCGGPLP 649 (1084)
T ss_pred cccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhhhccCCccc-cCChh--------hc--CccceeEeecCCCcc
Confidence 999999999 432 2 2222222344556676665555577666 22222 12 578999999999876
Q ss_pred chhccc--------CccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCcc
Q psy15223 957 QTVIRG--------SHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNII 1027 (2492)
Q Consensus 957 ~~~~~~--------~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i 1027 (2492)
.+. +. +.++++|||+|+|++|+||+|+||.++++.+.++++..|| +.+++||||+ .+|+|||||+||+|
T Consensus 650 ~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI 727 (1084)
T PLN02959 650 KSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSKSTGNFL 727 (1084)
T ss_pred ccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccccCCCcC
Confidence 543 21 2334789999999999999999999999999999999999 6799999999 99999999999999
Q ss_pred CcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHH
Q psy15223 1028 KPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII 1106 (2492)
Q Consensus 1028 ~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~ 1106 (2492)
+|.++|++||||++|||++++ +..+|++|+++.++. ++++++|+++|+..++.... .......+...|+|+++
T Consensus 728 ~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~---~~~~~~~~~~~D~wils 801 (1084)
T PLN02959 728 TLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAES---SLRTGPPSTYADRVFEN 801 (1084)
T ss_pred CHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhc---ccCCcccCCHHHHHHHH
Confidence 999999999999999999974 778999999988764 46778888887765543100 00111224678999999
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH-HHhhhh--hhccccCChHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15223 1107 NITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY-LDILKD--RLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 1183 (2492)
Q Consensus 1107 ~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y-l~~~Kd--rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPil 1183 (2492)
+++.++++++++|++|+|++|++. .|| |+..|+ |+|++.. ..++++|+++|..+++||||||
T Consensus 802 ~l~~~i~~v~~a~e~y~f~~A~~~----------~~Yel~~~k~~yr~~~~~~-----~~~~~~L~~vl~~~l~LLaP~~ 866 (1084)
T PLN02959 802 EINIAIAETEKNYEAMMFREALKS----------GFYDLQAARDEYRLSCGSG-----GMNRDLVWRFMDVQTRLITPIC 866 (1084)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHhHHHHhhccccc-----hHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999994 357 788888 8887531 1568899999999999999999
Q ss_pred hhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCCCc----
Q psy15223 1184 SFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKY----MILKKIRSKVMQKLEKIRSTGIIGSSL---- 1255 (2492)
Q Consensus 1184 P~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~----~~~~~lr~~v~~~le~~R~~k~i~~s~---- 1255 (2492)
||+|||||+.|.+. .+||+++.||+.+.. +..+++.+ +.+..+|..+....+..|++|.++.++
T Consensus 867 PfiaEEiW~~l~~~------~~sI~~~~wP~~~~~--d~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~~k~~~~~~~~~~ 938 (1084)
T PLN02959 867 PHYAEHVWREILKK------EGFAVTAGWPVAGEP--DLTLKRANKYLQDSIVSFRKLLQKQLAGSKKAKKGGAPVTLPE 938 (1084)
T ss_pred hHHHHHHHHhccCC------CCeEEecCCCCCCcc--CHHHHHHHHHHHHHHHHHHHhHHHhchhhhhcCCCCCCccccc
Confidence 99999999999532 369999999986533 44444433 445566666666666777766655432
Q ss_pred -ceEEEEEeCchh
Q psy15223 1256 -QAEIILKINKLD 1267 (2492)
Q Consensus 1256 -~a~v~i~~~~~~ 1267 (2492)
...|+|++.++.
T Consensus 939 ~~~~v~IyVA~~y 951 (1084)
T PLN02959 939 KKLAGLIYVAEKY 951 (1084)
T ss_pred CcceEEEEECCCC
Confidence 234778776553
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-133 Score=1340.01 Aligned_cols=580 Identities=44% Similarity=0.785 Sum_probs=519.9
Q ss_pred cccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc--
Q psy15223 437 NGVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-- 513 (2492)
Q Consensus 437 ~~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-- 513 (2492)
+.+|++.. .++++++|++++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~ 88 (601)
T PF00133_consen 9 NKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKE 88 (601)
T ss_dssp TTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTS
T ss_pred CCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccc
Confidence 35677665 567789999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCC
Q psy15223 514 -----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 588 (2492)
Q Consensus 514 -----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~ 588 (2492)
.+++++|+++|++|+.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+++|||||+.+||+|||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~ 168 (601)
T PF00133_consen 89 KKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPS 168 (601)
T ss_dssp HHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETT
T ss_pred cccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcc
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC
Q psy15223 589 CKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 668 (2492)
Q Consensus 589 ~~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~ 668 (2492)
|+|+|||+||+|+++.++++||+|++.+. .+++++||||||||||||+||||||+.+|+ .++
T Consensus 169 ~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~--------------~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~- 230 (601)
T PF00133_consen 169 CQTALSDHEVEYKEVKSPSIYVKFPLKDG--------------EEVYLVIWTTRPETLPGNTAIAVNPDFDYV---ING- 230 (601)
T ss_dssp TTEEE-GGGEEEEEEEEEEEEEEEEESSS--------------SEEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETT-
T ss_pred cccchhhhhcccccccCceEEEEEEecCc--------------cceEEEEEechhhHHhCCeeEEECCCccce---eCC-
Confidence 99999999999999999999999999653 247999999999999999999999999999 433
Q ss_pred CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 669 PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 669 ~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
+.+|+|++++++++++.+.. +.+++|++|+|++|.||+. ++.+|||+++||++++|||+||+|||||++
T Consensus 231 --~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~------~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~ 299 (601)
T PF00133_consen 231 --ERYIVAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLT------GREVPVIPDDFVDMDKGTGIVHSAPAHGPD 299 (601)
T ss_dssp --EEEEEEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTS------SSSEEEEEETTS-SSSTTSEEEE-TTT-HH
T ss_pred --eeehHHHHHHHHHHhhhhhc---ccccCcceecCcEeccccc------cceeEEEcccccccccchhhhhhcccCCHH
Confidence 89999999999999887655 8999999999999999998 889999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecc
Q psy15223 749 DFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL 828 (2492)
Q Consensus 749 D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~ 828 (2492)
||.+|++++| +++++||++|+|++++++|.|++|++||+.|++.|+++|.|++.++++|+||||||||+||++++++
T Consensus 300 Dy~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~ 376 (601)
T PF00133_consen 300 DYEIGKKHNL---PIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTD 376 (601)
T ss_dssp HHHHHHHHHH---CCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEE
T ss_pred HHHHHhhcCc---eeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccc
Confidence 9999999999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHH
Q psy15223 829 QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELI 908 (2492)
Q Consensus 829 QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i 908 (2492)
||||++++ |++++++++++++|+|+++++++.+||++++||||||||+||||||+|+|++|++.. ...+..
T Consensus 377 QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~-~~~~~~ 447 (601)
T PF00133_consen 377 QWFIKYDD--------WKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVL-VIESTI 447 (601)
T ss_dssp EEEEEHHH--------HHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEE-CCGGHH
T ss_pred eeEEecHH--------hHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccc-cccccc
Confidence 99999998 999999999999999999999999999999999999999999999999999999876 334667
Q ss_pred HHHHHHHhhcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeeeeecccccchh
Q psy15223 909 ELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRG 984 (2492)
Q Consensus 909 ~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~~~G~D~~rg 984 (2492)
+.++..++..|.+.|+..+..+.++.++..+.+++||||||||||++++++++... ++++|||+|+|++|+||+||
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~ 527 (601)
T PF00133_consen 448 ELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRG 527 (601)
T ss_dssp HHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTT
T ss_pred cccccccccccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhh
Confidence 77777888889999999888888887888999999999999999999999887543 33789999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccC
Q psy15223 985 WFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSIS 1057 (2492)
Q Consensus 985 wf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs 1057 (2492)
||+++++.+.++.+..||++|++||||+|.+|+|||||+||+|+|.++|++||||++|||++ ++++.+|++||
T Consensus 528 W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 528 WFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred HHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 68999999987
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-133 Score=1339.60 Aligned_cols=589 Identities=44% Similarity=0.793 Sum_probs=527.8
Q ss_pred hhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHH
Q psy15223 1578 GWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 1657 (2492)
Q Consensus 1578 ~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a 1657 (2492)
|||++|+++++|++..+.++++++|++++||||+||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 79999999999999866777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeC
Q psy15223 1658 EKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGL 1730 (2492)
Q Consensus 1658 ~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~ 1730 (2492)
+|.++. .+++++|++.|++|+.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 999864 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCE
Q psy15223 1731 KPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDY 1810 (2492)
Q Consensus 1731 ~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y 1810 (2492)
+||+|||.|+|+|||+||+|++..++++||+|++.+. .+++++||||||||||||+||||||+.+|
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~--------------~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y 226 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDG--------------EEVYLVIWTTRPETLPGNTAIAVNPDFDY 226 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSS--------------SEEEEEEEES-GGGGGG-BEEEE-TTSEE
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCc--------------cceEEEEEechhhHHhCCeeEEECCCccc
Confidence 9999999999999999999999999999999999653 24699999999999999999999999999
Q ss_pred EEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEE
Q psy15223 1811 ALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVH 1890 (2492)
Q Consensus 1811 ~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~ 1890 (2492)
+ .+ ++.+|+|+++++++.++.+.. +.+++|++|+|++|.||++ ++.+||++++||++++|||+||
T Consensus 227 ~---~~---~~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~------~~~~~vi~~~~V~~~~GTGiV~ 291 (601)
T PF00133_consen 227 V---IN---GERYIVAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLT------GREVPVIPDDFVDMDKGTGIVH 291 (601)
T ss_dssp E---ET---TEEEEEEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTS------SSSEEEEEETTS-SSSTTSEEE
T ss_pred e---eC---CeeehHHHHHHHHHHhhhhhc---ccccCcceecCcEeccccc------cceeEEEcccccccccchhhhh
Confidence 9 22 388999999999998877644 8999999999999999998 8999999999999999999999
Q ss_pred cCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCC
Q psy15223 1891 SAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKT 1970 (2492)
Q Consensus 1891 ~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~ 1970 (2492)
+|||||++||.+++++++ ++++++|++|+|++++++|.|++|++|++.|++.|+++|.|++.++++|+||+|||||+
T Consensus 292 ~~Pah~~~Dy~~~~~~~l---~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~ 368 (601)
T PF00133_consen 292 SAPAHGPDDYEIGKKHNL---PIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGT 368 (601)
T ss_dssp E-TTT-HHHHHHHHHHHH---CCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSC
T ss_pred hcccCCHHHHHHHhhcCc---eeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcc
Q psy15223 1971 PIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKL 2050 (2492)
Q Consensus 1971 pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~ 2050 (2492)
||++++++||||++++ |++++++++++|+|+|++.+++|.+||++++||||||||+||||||+|+|++|++.
T Consensus 369 ~ii~~~~~QWFi~~~~--------~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~ 440 (601)
T PF00133_consen 369 PIIPRLTDQWFIKYDD--------WKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEV 440 (601)
T ss_dssp BEEEEEEEEEEEEHHH--------HHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEE
T ss_pred EEEecccceeEEecHH--------hHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCccc
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999886
Q ss_pred cCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCC----ccccCCcCceeee
Q psy15223 2051 HPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS----HKKQLIFPADLYL 2126 (2492)
Q Consensus 2051 ~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~----~~~~~~~P~Dl~~ 2126 (2492)
.. ..+..+.++..+...+.+.|+..+..+.++.++..+.+++||||||||||++++++++.. .++++|||+|+++
T Consensus 441 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~ 519 (601)
T PF00133_consen 441 LV-IESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYI 519 (601)
T ss_dssp EC-CGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEE
T ss_pred cc-ccccccccccccccccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCccccc
Confidence 53 335666667777778888898887777777778899999999999999999999988743 3346789999999
Q ss_pred cccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-ccCCCCccc
Q psy15223 2127 EGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLS 2205 (2492)
Q Consensus 2127 ~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s~~~~~d~~ 2205 (2492)
+|+||+||||+++++.+.+++++.||+++++||||+|.+|+|||||+||+|+|.++|++||||++|||++ ++++.+|++
T Consensus 520 ~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~ 599 (601)
T PF00133_consen 520 EGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDIN 599 (601)
T ss_dssp EEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EE
T ss_pred CCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 688999999
Q ss_pred cc
Q psy15223 2206 IS 2207 (2492)
Q Consensus 2206 fs 2207 (2492)
||
T Consensus 600 ~s 601 (601)
T PF00133_consen 600 FS 601 (601)
T ss_dssp E-
T ss_pred cC
Confidence 96
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-127 Score=1326.69 Aligned_cols=754 Identities=18% Similarity=0.263 Sum_probs=623.9
Q ss_pred CCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHH
Q psy15223 1574 KREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 1653 (2492)
Q Consensus 1574 ~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPi 1653 (2492)
++|++||++|+++++|++.. .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|||||||||+||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~---~~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi 78 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP---DDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC---CCCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCch
Confidence 58999999999999998742 257899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc------------cCCCHHHHHHHH--HHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHH
Q psy15223 1654 EIQIEKLYG------------KNLSPIEIQNKA--RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719 (2492)
Q Consensus 1654 e~~a~k~~~------------~~~~~~e~~~~~--~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~ 1719 (2492)
|..|+|... .++++++|.++| ++|+.++.+.+++||++||+++||+|+|.|+||.|.++++|+|.+
T Consensus 79 ~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~ 158 (938)
T TIGR00395 79 LGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNK 158 (938)
T ss_pred HHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHH
Confidence 999988431 157899999998 899999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEeCcccccCCCCCcccccccccceeeec--ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhc
Q psy15223 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD--FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIP 1797 (2492)
Q Consensus 1720 L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~--~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~ 1797 (2492)
|+++|+||++.+||+|||.|+|+|||+|+++++..+ ..+||+|++.+ .+.+++||||||||||
T Consensus 159 L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~---------------~~~~l~~aTtRPETl~ 223 (938)
T TIGR00395 159 LKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELED---------------GAFYFVAATLRPETVY 223 (938)
T ss_pred HHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCC---------------CceEEEEeeCCcchhh
Confidence 999999999999999999999999999999887655 45789998743 2368999999999999
Q ss_pred cccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEec
Q psy15223 1798 ANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 1877 (2492)
Q Consensus 1798 ~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~ 1877 (2492)
|++||||||+++|+++++++ +.+|+++++++++..+ +.....+.+++|++|+|++|.||++ ++++||+++
T Consensus 224 g~tav~V~P~~~Y~~~~~~~---e~~i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~~P~~------~~~ipil~~ 293 (938)
T TIGR00395 224 GVTNCWVNPTITYVIAEVGG---EKWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVV------GPEVPILPA 293 (938)
T ss_pred cceeEEECCCCcEEEEEeCC---cEEEEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEECCCC------CCeeEEeec
Confidence 99999999999999999864 7899999999887543 1121233899999999999999998 889999999
Q ss_pred CccccCCCCceEEcCCCCChhhHHHHHHc-------CCCC----CCccc--ccCC-------------------------
Q psy15223 1878 DYITVDSGTGIVHSAPAYGIEDFLIFKKQ-------NMKD----SDIIN--PVMD------------------------- 1919 (2492)
Q Consensus 1878 ~~V~~~~GTG~V~~~Pahg~~D~~~~~~~-------~l~~----~~~~~--~vd~------------------------- 1919 (2492)
+||++++|||+||++||||++||.+++++ |+.+ -++++ .+++
T Consensus 294 ~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~ 373 (938)
T TIGR00395 294 EFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLE 373 (938)
T ss_pred ceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHH
Confidence 99999999999999999999999998863 3311 02222 2221
Q ss_pred ------------CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEe-ecccceeecCC
Q psy15223 1920 ------------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDK 1986 (2492)
Q Consensus 1920 ------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~-~~~QWFi~~~~ 1986 (2492)
+|+|+.+++.|+|++|++|++.|++.|+++|.+++.+++.| +|+|||||+||+++ +++||||++++
T Consensus 374 ~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~ 452 (938)
T TIGR00395 374 EATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSD 452 (938)
T ss_pred HHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCc
Confidence 57778788899999999999999999999999999887754 57788999999998 99999999996
Q ss_pred CCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHH-HHHHHHHHH
Q psy15223 1987 IPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE-LIELIAKKI 2065 (2492)
Q Consensus 1987 ~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~-~~~~i~~~~ 2065 (2492)
+.||+++++++++++|+|+..++++.+||+|++||||||||+||||||+...+-+..+...+.. ..+.+++.+
T Consensus 453 ------~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l 526 (938)
T TIGR00395 453 ------ESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL 526 (938)
T ss_pred ------HHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHh
Confidence 4499999999999999999999999999999999999999999999996321112222111111 122333333
Q ss_pred hhcCcccccccchhhhcCCCccCceeccccccccccc-------CcchhhhccCCccccCCcCceeeecccchhhhhHHH
Q psy15223 2066 ELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS-------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS 2138 (2492)
Q Consensus 2066 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdS-------g~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~ 2138 (2492)
...+.+.+ .+ ..+++|+||.+ |++.......+.++++|||+|+|++|+||+++|...
T Consensus 527 ~~~~~~~~--------------~l--~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~ 590 (938)
T TIGR00395 527 NKDYYGNE--------------QM--TDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTF 590 (938)
T ss_pred hccCCChH--------------HC--CcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHH
Confidence 32222111 11 23456666543 332221112234457899999999999999999998
Q ss_pred HHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH
Q psy15223 2139 SLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2139 ~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~ 2216 (2492)
.++.+.++++..|| +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++ +++++|++|+++.+.++.+
T Consensus 591 ~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~ 669 (938)
T TIGR00395 591 YIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTIL 669 (938)
T ss_pred HHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 89999999888888 89999999996 899999999999999999999999999999997 4899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhhhhhhHHH
Q psy15223 2217 TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIV-SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2217 ~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~-~~l~~f~~~~ls~~Yle 2295 (2492)
.+.+++|+++++..... +.. ....+..|+|+++++++++++++++|++|+|++|+ ..++.|++. +++|++
T Consensus 670 ~l~~l~n~~~~~~~~~~---~~~----~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~--~n~Yl~ 740 (938)
T TIGR00395 670 RLERLYEFAEEITKESN---LET----GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD--VDWYRR 740 (938)
T ss_pred HHHHHHHHHHHHHhhcc---cCC----CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHH
Confidence 99999999988765321 110 01245789999999999999999999999999999 778899854 799987
Q ss_pred hhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHH
Q psy15223 2296 ILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLL 2375 (2492)
Q Consensus 2296 ~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~ 2375 (2492)
..+.+ ...+++++++.+++||+|||||+|||||+.|+.. +||+.++||+.++...+++++
T Consensus 741 ~~~~~-------------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~-------~sv~~~~wP~~~~~~~d~~~~ 800 (938)
T TIGR00395 741 RGGVN-------------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNE-------GFVSLAKFPEASEPAVDKEVE 800 (938)
T ss_pred hCcch-------------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC-------CeEEecCCCCCCcccCCHHHH
Confidence 43221 1247899999999999999999999999999743 699999999988777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeCh
Q psy15223 2376 YKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK 2415 (2492)
Q Consensus 2376 ~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~ 2415 (2492)
..++.+.+ .++.+|+..+++...+..++|++++
T Consensus 801 ~~~~~~~~-------~i~~iR~~~~~~~~~p~~~~i~~~~ 833 (938)
T TIGR00395 801 AAEEYLRN-------LVRDIQEIAKIDASKPKRVYLYTSE 833 (938)
T ss_pred HHHHHHHH-------HHHHHHHhhccCCCCCcEEEEEECc
Confidence 76665543 3445555566766666677777643
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-127 Score=1191.49 Aligned_cols=764 Identities=24% Similarity=0.381 Sum_probs=661.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEI 520 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~e~ 520 (2492)
..+.|.+..|||+++|.||||||++.++.|.++||+||+||.|+|+||+|+.|+.++..|||.+.+ .+++++|
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F 152 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEF 152 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999998743 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccc
Q psy15223 521 QNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEY 600 (2492)
Q Consensus 521 ~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey 600 (2492)
.+++++|.+++-..+.+|+++||.++||+|.++|||+...+.|..+|.+|+++|+|||+.+.|||||..+||+|+.||+|
T Consensus 153 ~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995)
T KOG0432|consen 153 LKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995)
T ss_pred HHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccEEEEEeecCCch---hhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeH
Q psy15223 601 KKKYDFSIYVGFSFSEPE---KIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~---~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 677 (2492)
.|+.++.. +..+-.+.. +..-.+... ..+++..++|+|||||||+|++||||||+++
T Consensus 233 ~ei~~~t~-l~vpGyd~~VeFG~L~~faY~-v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~------------------ 292 (995)
T KOG0432|consen 233 VEIPGRTL-LSVPGYDTKVEFGVLYSFAYP-VEGSDEEIVVATTRPETILGDVAVAVHPDDD------------------ 292 (995)
T ss_pred eecCCCce-EecCCCCcceeeeeeeEEEEe-ccCCCCeEEEecCCccccccceeEEeCCCCc------------------
Confidence 99876542 111111100 000001100 1234559999999999999999999999965
Q ss_pred HhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcC
Q psy15223 678 NLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN 757 (2492)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~ 757 (2492)
|| ++|.|+.+.|||+ +|.+|||.+.+|++++|||+|+++|||+++||+++++||
T Consensus 293 --------RY------------k~lhGk~~~hP~~------~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~ 346 (995)
T KOG0432|consen 293 --------RY------------KHLHGKFVKHPFT------GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHN 346 (995)
T ss_pred --------cc------------ccccCceeecCCC------CCccceeecccccccccccceEecCCCChhHHHHHHhcC
Confidence 22 4678999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCC
Q psy15223 758 MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 837 (2492)
Q Consensus 758 l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~ 837 (2492)
| +.++.++++|.+++.+++|+||++|+||++|++.|++.|++...+......|.|.|||+.|++.+.+|||++++.
T Consensus 347 L---~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~e- 422 (995)
T KOG0432|consen 347 L---EFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKE- 422 (995)
T ss_pred C---CceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHH-
Confidence 9 888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHH
Q psy15223 838 PKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI 915 (2492)
Q Consensus 838 ~~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~ 915 (2492)
+.++++++++ +++++|+..++.+..|+++.+|||||||.|||+.||+|+-...+.
T Consensus 423 -------ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~---------------- 479 (995)
T KOG0432|consen 423 -------MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG---------------- 479 (995)
T ss_pred -------HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC----------------
Confidence 9999999998 699999999999999999999999999999999999987532111
Q ss_pred hhcCCccccccCch--------hhcC-CCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccch
Q psy15223 916 ELNGIEIWQNLDIK--------EFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHR 983 (2492)
Q Consensus 916 ~~~g~~~w~~~~~~--------~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~r 983 (2492)
....+.|.-...+ +..| ...-.+++|+|||||||+||++|+++++++++ ...+||.++.-+|.|+++
T Consensus 480 -~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILf 558 (995)
T KOG0432|consen 480 -RAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILF 558 (995)
T ss_pred -CCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHH
Confidence 0112334332211 1121 23345789999999999999999999998762 267899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhh-----------------------------
Q psy15223 984 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN----------------------------- 1034 (2492)
Q Consensus 984 gwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~----------------------------- 1034 (2492)
+|+.+|.+.+.-++|..||++|++||+|.|.+|||||||+||||||.|+|+
T Consensus 559 FWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~ 638 (995)
T KOG0432|consen 559 FWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQK 638 (995)
T ss_pred HHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997
Q ss_pred -hc-------ChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcccccccccchHHHHH
Q psy15223 1035 -LF-------GAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYA 1104 (2492)
Q Consensus 1035 -~y-------GaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~i 1104 (2492)
.| |.|+|||.|++ +.-..|+++|...+.....+.+||||..||+++.+.+ |.|............+|+||
T Consensus 639 kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WI 718 (995)
T KOG0432|consen 639 KDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWI 718 (995)
T ss_pred hhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHH
Confidence 34 99999999997 4567899999999999999999999999999997654 66653222222222399999
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccch
Q psy15223 1105 IINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILS 1184 (2492)
Q Consensus 1105 l~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP 1184 (2492)
+++|+..++.+.+.|+.|+|+.|++++++|+..+||+.|++.+|+-+|.+. ...+..|..+|+.+|...+++|+||||
T Consensus 719 lsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMP 796 (995)
T KOG0432|consen 719 LSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMP 796 (995)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999999999998753 466788999999999999999999999
Q ss_pred hHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeC
Q psy15223 1185 FTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 1264 (2492)
Q Consensus 1185 ~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~ 1264 (2492)
|+|||+||+|+... .....|+..+.||.....+.+++++..++.+++ +.+.++.+|+...+.++.+..|.+..+
T Consensus 797 FvtEel~qrlP~r~--~~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~----i~~~iRslra~y~l~~~~~~~v~~~~s 870 (995)
T KOG0432|consen 797 FITEELWQRLPRRK--GSKPASISVSPYPSSNELWRNEELESAFELVLA----ITRAIRSLRAEYNLSPKPRGSVFIASS 870 (995)
T ss_pred ccHHHHHHhcccCC--CCCCCceEecCCCchhcccCCHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCceEEEEecC
Confidence 99999999998752 112358999999976667888888888888875 556667889998888755666666543
Q ss_pred -chhHHHHHHhHHHHHHhhhccceEEeecC
Q psy15223 1265 -KLDFEILNEFGEELKFFLLTSSVSLFQIK 1293 (2492)
Q Consensus 1265 -~~~~~~l~~~~~~L~~l~~vs~v~i~~~~ 1293 (2492)
++....++.+.+.|..+..++.|++....
T Consensus 871 ~~~~~~~~~~~~~~i~~l~~~~~v~i~~~~ 900 (995)
T KOG0432|consen 871 DEEDKSILKEFLDEISTLTNLELVSISSPA 900 (995)
T ss_pred CCcchhHHHHHHHHHHHhhccceeEeccCC
Confidence 33456778888889999999999887643
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-126 Score=1312.23 Aligned_cols=718 Identities=19% Similarity=0.281 Sum_probs=612.8
Q ss_pred ccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhc------------cCCCHHHHHHH--HHHHHHH
Q psy15223 1615 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNLSPIEIQNK--ARALAYE 1680 (2492)
Q Consensus 1615 lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~------------~~~~~~e~~~~--~~~~~~~ 1680 (2492)
|||||++|++++|+++||+||+||+|+|||||||||||||.+|++... .+++.+++.++ |++|+.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999999999999999999999999999999986421 15677777766 4899999
Q ss_pred HHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE--
Q psy15223 1681 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI-- 1758 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~-- 1758 (2492)
+.+.|++||++||+|+||+|+|.|+||.|+++++|+|.+|+++||||||.+||+|||.|+|+|||+|+++++..+++.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~ 160 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYT 160 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987777775
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
||+|+ . +.+.+++||||||||||||+||||||+++|++++.++ +.+|+|+++++++...
T Consensus 161 ~ikf~-~---------------~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~---e~~i~a~~~~~~~~~~-- 219 (897)
T PRK12300 161 LIKFE-E---------------SEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDG---EKWIVSKEAAEKLSFQ-- 219 (897)
T ss_pred EEEEe-C---------------CCceEEEEEECCcchhccceEEEECCCCcEEEEEECC---EEEEEeHHHHHHHhcC--
Confidence 67886 1 1346999999999999999999999999999999753 8899999998887433
Q ss_pred CcCceE-EEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcC--------CC
Q psy15223 1839 FKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN--------MK 1909 (2492)
Q Consensus 1839 ~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~--------l~ 1909 (2492)
....++ .+++|++|+|++|.||++ ++.+||++++||++++|||+||+|||||++||.++++++ |+
T Consensus 220 ~~~~~~~~~~~G~~l~G~~~~~Pl~------~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~ 293 (897)
T PRK12300 220 DRDVEIIEEIKGSELIGKKVKNPVT------GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIE 293 (897)
T ss_pred cCCceEEEEeehHHhcCCEEECCCC------CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccC
Confidence 223444 999999999999999998 789999999999999999999999999999999999998 53
Q ss_pred CCCcc--------------------cccC---------------CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1910 DSDII--------------------NPVM---------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1910 ~~~~~--------------------~~vd---------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
..+++ +++| ++|+|++++|+|+|++|+||++.|++.|+++|.+++
T Consensus 294 ~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~ 373 (897)
T PRK12300 294 PIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADI 373 (897)
T ss_pred CcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEE
Confidence 22222 2335 689999999999999999999999999999999999
Q ss_pred eeeeccccccccccCCcEEEee-cccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCccccccc
Q psy15223 1955 IEMFEHSYMHCWRHKTPIIYRT-TLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQR 2033 (2492)
Q Consensus 1955 ~~~~~h~~p~~~R~~~pvi~~~-~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr 2033 (2492)
.+++.| +|+|||||+||++++ ++||||++++ +.||+++++++++|+|+|++.++++.+||+|++||||||||
T Consensus 374 ~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~------~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr 446 (897)
T PRK12300 374 MYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSD------PEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRR 446 (897)
T ss_pred EEecCC-CCcCcCCCCEEEEEecCCceEEEcCc------HHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeecc
Confidence 999988 578889999999986 6999999986 34999999999999999999999999999999999999999
Q ss_pred CCCceeeE---EEECCCCcccCCcHH-HHHHHHHHHhhcCcccccccchhhhcCCCc-cCceecccccccccccCcchhh
Q psy15223 2034 HWGVPIAF---FIHKKSGKLHPKTLE-LIELIAKKIELNGIEIWQNLDIKEFLGDDA-VNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2034 ~WG~pIP~---~~~~~~~~~~~~~~~-~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~-~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
+||||||+ |.++.+. .++.+ .++.+++.+...|.+ ++++.++-. .-+....+++++|++||+++..
T Consensus 447 ~WGtpiP~~~~w~~esl~---ds~iY~~~~~i~~~l~~~g~~------~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~ 517 (897)
T PRK12300 447 GLGTRLPWDEEWIIESLS---DSTIYMAYYTIAHKIREYGIK------PEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEI 517 (897)
T ss_pred ccCCcCCccCCEEeeecc---ccchhhhHHHHHHHHHHcCCC------hHHCChhhCceEEeCCCccccCchhcCCCHHH
Confidence 99999997 4443321 11211 244555555444422 222211100 0112334689999999987765
Q ss_pred hccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccC
Q psy15223 2109 VIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFG 2187 (2492)
Q Consensus 2109 ~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yG 2187 (2492)
..+.+.++++|||+|++++|+||+++|...+++.+.++++..|| +++++|||+++ +|+|||||+||+|+|.+++++||
T Consensus 518 ~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yG 596 (897)
T PRK12300 518 LEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYG 596 (897)
T ss_pred HHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcC
Confidence 55555556889999999999999999888888899999999999 89999999998 89999999999999999999999
Q ss_pred hhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHH
Q psy15223 2188 AEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 2266 (2492)
Q Consensus 2188 aD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~ 2266 (2492)
||++||||++ +++++|++|+++.++.+.+.+++++|+++++.+... . ..+...|+|++++++++++.++
T Consensus 597 aDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~------~~~~~~D~wils~l~~~i~~v~ 666 (897)
T PRK12300 597 ADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGG----E------EELRFIDKWLLSRLNRIIKETT 666 (897)
T ss_pred hHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----c------cccCHhHHHHHHHHHHHHHHHH
Confidence 9999999997 689999999999999999999999999998764321 1 1346789999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2267 SHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2267 ~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++|++|+|++|++.++.|+++. +|+|++..|+ +++.+++++++.+++||+|||||+|||||+.|+.
T Consensus 667 ~~~e~~~~~~A~~~i~~~l~~~-~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~ 732 (897)
T PRK12300 667 EAMESFQTRDAVQEAFYELLND-LRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG 732 (897)
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-HHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 9999999999999998777655 5899987664 5678999999999999999999999999999975
Q ss_pred CCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeC
Q psy15223 2347 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 2414 (2492)
Q Consensus 2347 ~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~ 2414 (2492)
. +||+.+.||+.++.+.|++++..++.+. .+.+.+|++|+..+++. ..++|++.
T Consensus 733 ~-------~sv~~~~wP~~~~~~~d~~~~~~~~~~~----~~i~~ir~~~~~~~~~~---~~~~i~~~ 786 (897)
T PRK12300 733 E-------GFVSLEKWPEPDESKIDEEAELAEEYVK----RLIEDIREILKVAKIKP---KKVYIYVA 786 (897)
T ss_pred C-------CeEEeCCCCCCCcccCCHHHHHHHHHHH----HHHHHHHHHHHHcCCCC---ceEEEEEC
Confidence 3 6999999999888777887877777665 46677888888877765 35666553
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-126 Score=1308.87 Aligned_cols=721 Identities=19% Similarity=0.276 Sum_probs=613.2
Q ss_pred ccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC------------cCCCHHHHHHH--HHHHHHH
Q psy15223 465 IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNLSPIEIQNK--ARALAYE 530 (2492)
Q Consensus 465 lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~------------~~~~~~e~~~~--~~~~a~~ 530 (2492)
|||||++|++++|+++||+||+||+|+|+|||||||||||..|++... .+++.+++.+. |++|+.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999999999999999999999999999999976321 15677777765 5999999
Q ss_pred HHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE--
Q psy15223 531 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI-- 608 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~-- 608 (2492)
+.+.|+++|++||+++||+|+|.||||.|+++++|+|.+|+++||||||.+||+|||.|+|+|||+|++|.+..+++.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~ 160 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYT 160 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987777774
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
||+|+ . +.+.+++||||||||||||+||||||+++|++++.++ +.||+|+++++++..+.
T Consensus 161 ~ikf~-~---------------~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~---e~~i~a~~~~~~~~~~~- 220 (897)
T PRK12300 161 LIKFE-E---------------SEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDG---EKWIVSKEAAEKLSFQD- 220 (897)
T ss_pred EEEEe-C---------------CCceEEEEEECCcchhccceEEEECCCCcEEEEEECC---EEEEEeHHHHHHHhcCc-
Confidence 78887 1 1257999999999999999999999999999999865 89999999999885442
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcC--------CCC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN--------MKD 760 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~--------l~~ 760 (2492)
.+..++.+++|++|+|++|.|||+ ++.+||++++||++++|||+||+|||||++||.++++++ |+.
T Consensus 221 ~~~~~~~~~~G~~l~G~~~~~Pl~------~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~ 294 (897)
T PRK12300 221 RDVEIIEEIKGSELIGKKVKNPVT------GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEP 294 (897)
T ss_pred CCceEEEEeehHHhcCCEEECCCC------CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCC
Confidence 123345999999999999999998 789999999999999999999999999999999999998 533
Q ss_pred CCcc--------------------cccC---------------CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeee
Q psy15223 761 SDII--------------------NPVM---------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNI 805 (2492)
Q Consensus 761 ~~~~--------------------~~vd---------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~ 805 (2492)
.+++ +++| ++|+|++++|+|+|++|++|++.|++.|+++|.+++.
T Consensus 295 i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~ 374 (897)
T PRK12300 295 IPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIM 374 (897)
T ss_pred cceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEE
Confidence 2222 2335 6999999999999999999999999999999999999
Q ss_pred eeeccccccccccCCcEEEee-cccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeecccc
Q psy15223 806 EMFEHSYMHCWRHKTPIIYRT-TLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRH 884 (2492)
Q Consensus 806 ~~~~h~yp~~wR~~~pvi~r~-t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~ 884 (2492)
+++.| +|+|||||+|||+++ ++||||++++ +.||+++++++++++|+|++.++++.+||+|++||||||||+
T Consensus 375 ~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~------~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~ 447 (897)
T PRK12300 375 YEFSN-RPVYCRCGTECVVKVVKDQWFIDYSD------PEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRG 447 (897)
T ss_pred EecCC-CCcCcCCCCEEEEEecCCceEEEcCc------HHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeeccc
Confidence 98888 678889999999996 5999999985 349999999999999999999999999999999999999999
Q ss_pred CCceeeE---EEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCCCc-cCceecCCccccccccccccchhc
Q psy15223 885 WGVPIAF---FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDA-VNYKKSNDTLDVWFDSGITHQTVI 960 (2492)
Q Consensus 885 WGvpIP~---~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~~~-~~~~~~~dvlDvWfdSg~~~~~~~ 960 (2492)
||||||+ |.++.+.... ....+..++..+...|.+ ++++.++-. ..+....+++++|++||+++....
T Consensus 448 WGtpiP~~~~w~~esl~ds~--iY~~~~~i~~~l~~~g~~------~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~ 519 (897)
T PRK12300 448 LGTRLPWDEEWIIESLSDST--IYMAYYTIAHKIREYGIK------PEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILE 519 (897)
T ss_pred cCCcCCccCCEEeeeccccc--hhhhHHHHHHHHHHcCCC------hHHCChhhCceEEeCCCccccCchhcCCCHHHHH
Confidence 9999996 6665443210 012244455444544432 222221100 012233468999999998776554
Q ss_pred ccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChh
Q psy15223 961 RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 1039 (2492)
Q Consensus 961 ~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD 1039 (2492)
..+.++++|||+|+|++|+||+|+|....++.+.++.+..|| +++++|||+++ +|+|||||+||+|+|.+++++||+|
T Consensus 520 ~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaD 598 (897)
T PRK12300 520 EMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGAD 598 (897)
T ss_pred HHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChH
Confidence 444456789999999999999999877778889999999999 89999999998 8999999999999999999999999
Q ss_pred hHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHH
Q psy15223 1040 ILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSH 1118 (2492)
Q Consensus 1040 ~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a 1118 (2492)
++|||+++ +++.+|++|+++.++.+.+.++|++|+++++.+.... ..+...|+|++++++++++++.++
T Consensus 599 alRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~----------~~~~~~D~wils~l~~~i~~v~~~ 668 (897)
T PRK12300 599 VVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGGE----------EELRFIDKWLLSRLNRIIKETTEA 668 (897)
T ss_pred HHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc----------cccCHhHHHHHHHHHHHHHHHHHH
Confidence 99999997 6899999999999999999999999999987653211 134678999999999999999999
Q ss_pred HhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCC
Q psy15223 1119 YRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKN 1198 (2492)
Q Consensus 1119 ~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~ 1198 (2492)
|++|+|++|++.++.|++++ +|+|++..|+ +++.+++++++.++++|+||+||+|||+|+.|+..
T Consensus 669 ~e~~~~~~A~~~i~~~l~~~-~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~- 733 (897)
T PRK12300 669 MESFQTRDAVQEAFYELLND-LRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE- 733 (897)
T ss_pred HHhcCHHHHHHHHHHHHHHH-HHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-
Confidence 99999999999998777665 5899997765 57889999999999999999999999999999743
Q ss_pred ccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCc
Q psy15223 1199 FYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINK 1265 (2492)
Q Consensus 1199 ~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~ 1265 (2492)
+||+++.||+.++...+..++..++.+.++...+ +.+|+..+++. ..++|.+.+
T Consensus 734 ------~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~i----r~~~~~~~~~~---~~~~i~~~~ 787 (897)
T PRK12300 734 ------GFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDI----REILKVAKIKP---KKVYIYVAP 787 (897)
T ss_pred ------CeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHH----HHHHHHcCCCC---ceEEEEECC
Confidence 6999999999877666777877788777655554 45666665644 356666543
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-123 Score=1281.63 Aligned_cols=730 Identities=18% Similarity=0.262 Sum_probs=606.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC------------cCC
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNL 515 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~------------~~~ 515 (2492)
++++|++++|||||||.|||||++|++++|+++||+||+||+|+|+|||||||+|||..|++... .++
T Consensus 23 ~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i 102 (938)
T TIGR00395 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAI 102 (938)
T ss_pred CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccC
Confidence 47899999999999999999999999999999999999999999999999999999999988431 157
Q ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 516 SPIEIQNKA--RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 516 ~~~e~~~~~--~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++|.+.| ++|+.++.+.++++|++||+++||+|+|.||||.|.++++|+|.+|+++|+||++.+||+|||.|+|+|
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~l 182 (938)
T TIGR00395 103 PREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPV 182 (938)
T ss_pred CHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCC
Confidence 899999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceec--cEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCc
Q psy15223 594 AEAEIEYKKKYD--FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671 (2492)
Q Consensus 594 ae~Evey~~~~~--~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~ 671 (2492)
||+|++|.+..+ ..+||+|++.+ .+.+++||||||||||||+||||||+++|++++.++ +
T Consensus 183 sd~e~~~~e~~~~~~~~~ikf~~~~---------------~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~---e 244 (938)
T TIGR00395 183 EDHDLLSGEGVTIVEYILIKFELED---------------GAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGG---E 244 (938)
T ss_pred chhHhccCCccccceEEEEEEEcCC---------------CceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCC---c
Confidence 999999987655 55889998753 136899999999999999999999999999999876 8
Q ss_pred eeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHH
Q psy15223 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL 751 (2492)
Q Consensus 672 ~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~ 751 (2492)
.||+++++++++..+ +.....+.+++|++|.|++|.||+. ++++||++++||++++|||+||++||||++||.
T Consensus 245 ~~i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~~P~~------~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~ 317 (938)
T TIGR00395 245 KWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVV------GPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYI 317 (938)
T ss_pred EEEEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEECCCC------CCeeEEeecceeecCCCcceEEeCCCCCHHHHH
Confidence 999999999998654 2333455999999999999999997 889999999999999999999999999999999
Q ss_pred HHHHc-------CCCC----CCccc--ccCC-------------------------------------CCcccccCCCCC
Q psy15223 752 IFKKQ-------NMKD----SDIIN--PVMD-------------------------------------DGNFISTLPLFG 781 (2492)
Q Consensus 752 ~~~~~-------~l~~----~~~~~--~vd~-------------------------------------~G~~~~~~~~~~ 781 (2492)
+++++ |+.. -++++ ++|+ +|+|+++++.|+
T Consensus 318 ~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~ 397 (938)
T TIGR00395 318 ALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYK 397 (938)
T ss_pred HHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccC
Confidence 98863 3321 02222 3332 466677778999
Q ss_pred CcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe-ecccceeecCCCCcchhHHHHHHHHHHhhcceEec
Q psy15223 782 GMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFP 860 (2492)
Q Consensus 782 G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r-~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P 860 (2492)
|++|++|++.|++.|++.|.+++.+++.| +|+|||||+||+++ +++||||++++ ++||+++++++++++|+|
T Consensus 398 G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~------~~~k~~~~~~l~~~~~~P 470 (938)
T TIGR00395 398 GMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSD------ESWKELAHECLEGMRIIP 470 (938)
T ss_pred CcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCc------HHHHHHHHHHHhcCEEeC
Confidence 99999999999999999999999877754 57789999999998 99999999996 459999999999999999
Q ss_pred chhhHHHHHHHhcCCCeeeeccccCCceeeE---EEECCCCccccCcH-HHHHHHHHHHhhcCCccccccCchhhcCCCc
Q psy15223 861 SWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKSGKLHPKTL-ELIELIAKKIELNGIEIWQNLDIKEFLGDDA 936 (2492)
Q Consensus 861 ~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~---~~~~~~~~~~~~~~-~~i~~~~~~~~~~g~~~w~~~~~~~~~~~~~ 936 (2492)
+..++++.+||+|++||||||||+||||||+ |+++.... .+. ..+..++..+...+.+.+
T Consensus 471 ~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsd---stiY~~~~~i~~~l~~~~~~~~------------- 534 (938)
T TIGR00395 471 EEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSD---STIYMAYYTIAHYLNKDYYGNE------------- 534 (938)
T ss_pred HHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecch---hhhhhhhccHHHHhhccCCChH-------------
Confidence 9999999999999999999999999999996 33332110 000 112233333332222111
Q ss_pred cCceecCCcccccccc-------ccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEe
Q psy15223 937 VNYKKSNDTLDVWFDS-------GITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTH 1008 (2492)
Q Consensus 937 ~~~~~~~dvlDvWfdS-------g~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~h 1008 (2492)
++ ..+++|.||++ |++.......+.++++|||+|+|++|+||+|+|....++.+.++.+..|| +.+++|
T Consensus 535 -~l--~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~ 611 (938)
T TIGR00395 535 -QM--TDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVN 611 (938)
T ss_pred -HC--CcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEe
Confidence 11 23455555543 33222111123345789999999999999999988889999999888888 899999
Q ss_pred eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy15223 1009 GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNP 1087 (2492)
Q Consensus 1009 G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~ 1087 (2492)
||+++ +|+|||||+||+|+|.+++++||+|++||||++ +++++|++|+++.+.++.+.+.+++|++++++.... +
T Consensus 612 G~vl~-~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~---~ 687 (938)
T TIGR00395 612 GYVML-EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN---L 687 (938)
T ss_pred ceEEe-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc---c
Confidence 99996 899999999999999999999999999999997 489999999999999999999999999988765432 1
Q ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHH
Q psy15223 1088 NINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIV-SKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQT 1166 (2492)
Q Consensus 1088 ~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~-~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~ 1166 (2492)
.. .......|+|++++++++++++.++|++|+|++|+ ..+++|++. +++|++..+++ ...
T Consensus 688 ~~----~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~--~n~Yl~~~~~~-------------~~~ 748 (938)
T TIGR00395 688 ET----GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD--VDWYRRRGGVN-------------HKD 748 (938)
T ss_pred CC----CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHHhCcch-------------HHH
Confidence 10 01245789999999999999999999999999999 778999854 79998743221 234
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15223 1167 SIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIR 1246 (2492)
Q Consensus 1167 ~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R 1246 (2492)
+++++++.+++||+|||||+|||||+.|+.. +||+++.||+.++...+..++..++.+.++..+ .|
T Consensus 749 ~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~-------~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~-------iR 814 (938)
T TIGR00395 749 VLARYLETWIKLLAPFAPHFAEEMWEEVGNE-------GFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRD-------IQ 814 (938)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHcCCC-------CeEEecCCCCCCcccCCHHHHHHHHHHHHHHHH-------HH
Confidence 7999999999999999999999999999643 699999999977665566777777776655433 44
Q ss_pred hhCCCCCCcceEEEEEeCc
Q psy15223 1247 STGIIGSSLQAEIILKINK 1265 (2492)
Q Consensus 1247 ~~k~i~~s~~a~v~i~~~~ 1265 (2492)
+...+.......++|.+.+
T Consensus 815 ~~~~~~~~~p~~~~i~~~~ 833 (938)
T TIGR00395 815 EIAKIDASKPKRVYLYTSE 833 (938)
T ss_pred HhhccCCCCCcEEEEEECc
Confidence 4455555444567776654
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-120 Score=1240.82 Aligned_cols=667 Identities=25% Similarity=0.382 Sum_probs=547.1
Q ss_pred cccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC
Q psy15223 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH 1649 (2492)
Q Consensus 1570 a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~h 1649 (2492)
+++.++|++||++|+++++|++.. +.++++|++++|||||||.|||||++||+++||++||+||+||+|+|+||||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~--~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~ 78 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD--DSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAF 78 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC--CCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCC
Confidence 367789999999999999998743 356788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1650 GMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1650 GlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
|||||.+|++. +++|.+ |+.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++||||++
T Consensus 79 Glpie~~a~~~---g~~p~~-------~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~ 148 (842)
T TIGR00396 79 GLPAENAAIKR---GIHPAK-------WTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVK 148 (842)
T ss_pred ChHHHHHHHHc---CCCHHH-------HHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEee
Confidence 99999999876 778765 89999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCccccccccccee---eec--------ceEEEEEec-----cC--------chhh----HhhhccCCC--
Q psy15223 1730 LKPVNWCFDCKSALAEAEIEYKK---KYD--------FSIYVGFSF-----SE--------PEKI----KSIFNLKNL-- 1779 (2492)
Q Consensus 1730 ~~~v~wcp~~~t~Lad~Evey~~---~~~--------~~~yv~f~~-----~~--------~~~~----~~~~~~~~~-- 1779 (2492)
.++|+|||.|+|+|||+||++.. ..+ .++|+++.- .+ ++.+ .++++.+.+
T Consensus 149 ~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~ 228 (842)
T TIGR00396 149 EADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVE 228 (842)
T ss_pred ccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEE
Confidence 99999999999999999995422 111 233444221 00 0000 011111110
Q ss_pred -----CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC----cCceEEEEecc
Q psy15223 1780 -----PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF----KGNIIGICKGI 1850 (2492)
Q Consensus 1780 -----~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~----~~~~v~~~~G~ 1850 (2492)
.+.+.+++||||||||||||+||||||+++|+.+.... .+.++.+.+.... +...+.+.+|.
T Consensus 229 i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~g 299 (842)
T TIGR00396 229 ITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAEN---------NPKVAAFIKKILQKTTTERTKETKLKKG 299 (842)
T ss_pred EEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcc---------hHHHHHHHHHHhccCchhhhhhhccccc
Confidence 12245899999999999999999999999998764221 2234444443321 11222456777
Q ss_pred cccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC------------
Q psy15223 1851 KLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM------------ 1918 (2492)
Q Consensus 1851 ~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd------------ 1918 (2492)
.|.|++|.||++ ++.+||+.++||++++|||+||+|||||++||++|++||| ++++++|
T Consensus 300 ~~~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~ 370 (842)
T TIGR00396 300 VFTGIKAIHPLT------GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL---PIKVVIDPAGKNLKTQAFT 370 (842)
T ss_pred EecCCEEECCCC------CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC---CcceeeCCccccccccccc
Confidence 899999999998 8999999999999999999999999999999999999999 7778887
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++|+|++ .+.|.|+++.+|++.|++.|+++|.+. .++.+
T Consensus 371 ~~G~~~~-~~~~~Gl~~~~A~~~Ii~~L~~~g~~~----------------~~v~y------------------------ 409 (842)
T TIGR00396 371 EDGVLVN-SGEFNGLNSSEAREAIIAMLEKEGKGK----------------RKVNY------------------------ 409 (842)
T ss_pred CCceEec-chhcCCCCHHHHHHHHHHHHHHcCCCC----------------ceEEe------------------------
Confidence 4788875 488999999999999999999999742 12211
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc-------
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE------- 2071 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~------- 2071 (2492)
+++|||||||||||+|||+|||++|+.+++...+++.++++.+...|.+
T Consensus 410 ------------------------rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~ 465 (842)
T TIGR00396 410 ------------------------RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRI 465 (842)
T ss_pred ------------------------ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhh
Confidence 2469999999999999999999999986556667777777666544422
Q ss_pred -cccccchhhhcCCCccCceecccccccccccCcchhhhccCCc--------cccCCcCceeeecccchh-------hhh
Q psy15223 2072 -IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH--------KKQLIFPADLYLEGSDQH-------RGW 2135 (2492)
Q Consensus 2072 -~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--------~~~~~~P~Dl~~~G~D~~-------r~w 2135 (2492)
.|.+..+ |.++..+.|++|||||||||||++.+++.... .+++|||+|+|++|.||+ |||
T Consensus 466 ~~~~~~~c----p~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~ 541 (842)
T TIGR00396 466 QEWVNVTC----PSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFW 541 (842)
T ss_pred hhhhcCcC----ccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHH
Confidence 3443332 33355799999999999999988887664322 236799999999999995 776
Q ss_pred HHHHHHHHHHhcCCccccEEEEeeeEEc----CCCc---------------------------eeeeccCCccCcchhhh
Q psy15223 2136 FHSSLLTSIILNKSAPYKALLTHGFVVD----SKGK---------------------------KMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2136 f~~~l~~~~~l~~~~pfk~v~~hG~vld----~~G~---------------------------KMSKS~GNvi~p~~ii~ 2184 (2492)
|++|....++.+++||++|++||||+| ++|+ |||||+||+|+|.++++
T Consensus 542 -~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~ 620 (842)
T TIGR00396 542 -HKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK 620 (842)
T ss_pred -HHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH
Confidence 477777777889999999999999999 8999 99999999999999999
Q ss_pred ccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHH
Q psy15223 2185 LFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQK 2263 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~ 2263 (2492)
+||+|++|||+++ +++++|++|+++.++++.++++||||+++++++++.++.. .....+...|+|++++++++++
T Consensus 621 ~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~----~~~~~l~~~d~~il~~l~~~i~ 696 (842)
T TIGR00396 621 KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTY----LTPTILEEAQKELRRDVHKFLK 696 (842)
T ss_pred HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999995 6899999999999999999999999999998777654321 1112346789999999999999
Q ss_pred HHHHHHhccc-HHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q psy15223 2264 EILSHYRMYE-FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 2342 (2492)
Q Consensus 2264 ~v~~a~e~~~-f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~ 2342 (2492)
+++++|++|+ |++|++.+++|++ +|++. . + ..++++++..+++|||||+||+|||||+
T Consensus 697 ~v~~~~e~y~~fn~ai~~l~~f~n-~L~~~-~---~----------------~~~l~~~l~~ll~lLaPf~PhiaEElW~ 755 (842)
T TIGR00396 697 KVTEDLEKLESFNTAISAMMILLN-ALYKA-K---K----------------DALYLEYLKGFLTVLSPFAPHLAEELWE 755 (842)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-HHHhh-h---h----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999988 9999999999994 55531 0 0 1368999999999999999999999999
Q ss_pred HcccCCccccCCCCeeeccCCCCCc
Q psy15223 2343 IFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2343 ~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
.|+.. ..||+.++||+.++
T Consensus 756 ~l~~~------~~sv~~~~wP~~d~ 774 (842)
T TIGR00396 756 KLGSE------PFIIKQAKWPKVDE 774 (842)
T ss_pred HhCCC------CCeeecCCCCCCCH
Confidence 99743 25899999998654
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-120 Score=1232.86 Aligned_cols=688 Identities=20% Similarity=0.303 Sum_probs=536.1
Q ss_pred ceeeccchhhhhhhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCc-ccchHhhhhHHHHHHHHHH
Q psy15223 1555 LRTETASLVALAILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGD-IHIGHAVNKILKDIIVKFY 1633 (2492)
Q Consensus 1555 LR~ETA~~~~~~~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~-lHlGH~~~~~~~Dii~Ry~ 1633 (2492)
++++++.--......+++.++|++||++|+++++|+...+.+.++++|++++|||||||. |||||++||+++|+++||+
T Consensus 65 ~~~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~ 144 (963)
T PLN02563 65 LTSTTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYK 144 (963)
T ss_pred hhhhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHH
Confidence 344444333333456889999999999999999998754335678899999999999997 9999999999999999999
Q ss_pred HHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHH
Q psy15223 1634 NMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE 1713 (2492)
Q Consensus 1634 rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~ 1713 (2492)
||+||+|+|+|||||||||||.+|.+. +..|.+ ++.++++.|++||++||+++||+++|.|+||+|++++
T Consensus 145 Rm~G~~Vl~~~G~D~~GlPiE~~a~~~---g~~p~~-------~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~ 214 (963)
T PLN02563 145 RMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKI-------TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWT 214 (963)
T ss_pred HhcCCeecccccccccCcHHHHHHHHc---CCChHH-------hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHH
Confidence 999999999999999999999998775 566654 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEeCcccccCCCCCcccccccccce-eeecceEEEEEeccC---------------------chhh-
Q psy15223 1714 LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK-KKYDFSIYVGFSFSE---------------------PEKI- 1770 (2492)
Q Consensus 1714 ~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~-~~~~~~~yv~f~~~~---------------------~~~~- 1770 (2492)
||+|.+|+++|||||+.++|+|||.|+|+||++||++. ...+.+.++++++.. ++.+
T Consensus 215 q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~ 294 (963)
T PLN02563 215 QWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIK 294 (963)
T ss_pred HHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHH
Confidence 99999999999999999999999999999999999874 122333223322210 0000
Q ss_pred ---HhhhccCCC-------CC-----CccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCC---ceehhhHHhHHH
Q psy15223 1771 ---KSIFNLKNL-------PS-----GKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPP---LLLILAFNLVKS 1832 (2492)
Q Consensus 1771 ---~~~~~~~~~-------~~-----~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~---~~~i~a~~~~~~ 1832 (2492)
.+++|.+.+ .+ .+.+++||||||||||||+||||||+++|+.+.+..+.. +.|+.+......
T Consensus 295 ~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~ 374 (963)
T PLN02563 295 EMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSD 374 (963)
T ss_pred HHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhH
Confidence 011111110 01 246899999999999999999999999998654322111 122222222222
Q ss_pred HHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCC
Q psy15223 1833 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 1912 (2492)
Q Consensus 1833 ~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~ 1912 (2492)
+. +. .....++..+.|+++.||++ ++++||+.++||++++|||+||+|||||++||++|++||| +
T Consensus 375 ~~-~~-----~~~~~k~g~~~g~~~~~P~~------~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~L---p 439 (963)
T PLN02563 375 LE-RT-----ELQKEKTGVFTGSYAINPAT------GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDL---P 439 (963)
T ss_pred Hh-hh-----hccceecccccCcEEeccCC------CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCC---C
Confidence 21 11 11244666799999999998 8899999999999999999999999999999999999999 6
Q ss_pred cccccC---C-----------CCccccCCCC----CCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEE
Q psy15223 1913 IINPVM---D-----------DGNFISTLPL----FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIY 1974 (2492)
Q Consensus 1913 ~~~~vd---~-----------~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~ 1974 (2492)
++++|+ + +|++.+ .+. |.|+.+++|++.|++.|+++|.+.+ +
T Consensus 440 i~~vI~~~d~~~~~~~~~y~~~G~l~n-s~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~--- 499 (963)
T PLN02563 440 IKWVVKPADGNEDDAEKAYTGEGVIVN-SSSSGLDINGLSSKEAAKKVIEWLEETGNGKK----------------K--- 499 (963)
T ss_pred ceeeeccCccccccccccccCceeEec-CCCcccccCCcCHHHHHHHHHHHHHhCCCCCC----------------e---
Confidence 666662 2 344432 243 9999999999999999999997521 1
Q ss_pred eecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCccc-CC
Q psy15223 1975 RTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PK 2053 (2492)
Q Consensus 1975 ~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~-~~ 2053 (2492)
++| +++|||||||||||+|||+|+|++||+.. +.
T Consensus 500 -------------------------------v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~ 534 (963)
T PLN02563 500 -------------------------------VNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVP 534 (963)
T ss_pred -------------------------------eEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecc
Confidence 222 36899999999999999999999998533 33
Q ss_pred cHHHHHHHHH--HHhhcCcccccccchhhh----cCCCccCceecccccccccccCcchhhhccCCcc--------ccCC
Q psy15223 2054 TLELIELIAK--KIELNGIEIWQNLDIKEF----LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--------KQLI 2119 (2492)
Q Consensus 2054 ~~~~~~~i~~--~~~~~g~~~w~~~~~~~~----~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--------~~~~ 2119 (2492)
.++++..+++ .+...|...|.-....++ ++.++..+.||+|||||||||+|++.++..+.+. .++|
T Consensus 535 e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w 614 (963)
T PLN02563 535 ESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYW 614 (963)
T ss_pred hHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCc
Confidence 3345544442 222234333332222233 2334567999999999999999998887754421 1479
Q ss_pred cCceeeecccchh-------hhhHHHHHHHHHHhcCCccccEEEEeeeEEc---------CCCc----------------
Q psy15223 2120 FPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKALLTHGFVVD---------SKGK---------------- 2167 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~-------r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld---------~~G~---------------- 2167 (2492)
||+|+|++|.||+ ||||++++..++ +.+++||+++++||||+| .+|+
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~ 693 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQE 693 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccc
Confidence 9999999999995 999999988887 578999999999999998 7777
Q ss_pred -----------------------------eeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH
Q psy15223 2168 -----------------------------KMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET 2217 (2492)
Q Consensus 2168 -----------------------------KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~ 2217 (2492)
|||||+||+|+|.++|++||||+||||+++ ++..+|..|+.+.++.+.++
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rf 773 (963)
T PLN02563 694 KIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRF 773 (963)
T ss_pred ccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHH
Confidence 999999999999999999999999999996 56778899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhh
Q psy15223 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 2297 (2492)
Q Consensus 2218 ~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~ 2297 (2492)
++++||++.....+...+.+. ... .....|+|+++++++++++++++|++|+|++|++++|+|++ .+++++
T Consensus 774 L~rlwn~~~~~~~~~~~~~~~--~~~--~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~~---- 844 (963)
T PLN02563 774 LGRTWRLVVGAPLPDGSFRDG--TVV--TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTN-AAYKWD---- 844 (963)
T ss_pred HHHHHHHHHHhhhcccccCcc--ccc--cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCch----
Confidence 999999876542111112111 011 11246899999999999999999999999999999999995 343210
Q ss_pred hhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCc
Q psy15223 2298 KDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2298 K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
...+++++.+++||+|||||+|||||+.|+.. +||+.++||++++
T Consensus 845 ------------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~-------~sv~~~~WP~~d~ 889 (963)
T PLN02563 845 ------------------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS-------NSLAYEPWPEANP 889 (963)
T ss_pred ------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-------CeeeeCCCCCCCH
Confidence 13467899999999999999999999999753 6899999998654
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-119 Score=1231.72 Aligned_cols=666 Identities=23% Similarity=0.345 Sum_probs=545.7
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
+++++.++|++||++|+++++|++..+ .+++|++++|||||||.|||||++|++++||++||+||+||+|+|++|||
T Consensus 3 ~~y~~~~iE~~w~~~W~~~~~f~~~~~---~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 3 ERYNPKEIEKKWQKYWEENKTFKTTED---SSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcc---CCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 467899999999999999999987432 33479999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1648 CHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
|||+|||.+|++. +++|. +|+.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++|+||
T Consensus 80 ~~Glpie~~a~~~---g~~~~-------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 149 (805)
T PRK00390 80 AFGLPAENAAIKT---GTHPA-------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAY 149 (805)
T ss_pred CCCCHHHHHHHHc---CCCHH-------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999999999876 67765 4999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCccccccccccee-eecceEEEEE-------eccCch---------------hhH----hhhccCC--
Q psy15223 1728 HGLKPVNWCFDCKSALAEAEIEYKK-KYDFSIYVGF-------SFSEPE---------------KIK----SIFNLKN-- 1778 (2492)
Q Consensus 1728 r~~~~v~wcp~~~t~Lad~Evey~~-~~~~~~yv~f-------~~~~~~---------------~~~----~~~~~~~-- 1778 (2492)
++.++|+|||.|+|+|||+||+... ..+.+.++++ ++.+.. .++ ++++...
T Consensus 150 ~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~ 229 (805)
T PRK00390 150 RKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGA 229 (805)
T ss_pred EecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceE
Confidence 9999999999999999999997532 2233333332 221110 000 0111000
Q ss_pred -----CCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceE-EEEecccc
Q psy15223 1779 -----LPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKL 1852 (2492)
Q Consensus 1779 -----~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l 1852 (2492)
..+.+.+++||||||||||||+||||||+++|+.+..++ . ..+++++++..+..+.+...+ .+++|. |
T Consensus 230 ~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l 303 (805)
T PRK00390 230 EVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ---N--PAVAAFIEECKKKSDLERQTETKEKTGV-F 303 (805)
T ss_pred EEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc---h--HHHHHHHHHHhhhcchhhhhcccceeee-e
Confidence 011246899999999999999999999999998776432 1 124455555444443333322 688997 9
Q ss_pred cccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC-------------
Q psy15223 1853 SKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD------------- 1919 (2492)
Q Consensus 1853 ~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~------------- 1919 (2492)
.|++|.||++ ++++||+.++||++++|||+||+|||||++||+++++||| ++++++|.
T Consensus 304 ~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~~~~i~~~g~~~~~~~~~~~ 374 (805)
T PRK00390 304 TGLYAIHPLT------GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGL---PIKPVIEPGDGDEDISEEAYT 374 (805)
T ss_pred cCcEEECCCC------CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCC---CceeeeCCCCccccccccccc
Confidence 9999999998 8899999999999999999999999999999999999999 77777764
Q ss_pred -CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1920 -DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1920 -~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
+|+|++. +.|+|+++++|++.|++.|++.|.+ +.++.+
T Consensus 375 ~~g~~~~~-~~~~Gl~~~~a~~~Ii~~L~~~g~~----------------~~~v~~------------------------ 413 (805)
T PRK00390 375 GDGVLINS-GELDGLDSEEAKEAIIAWLEEKGLG----------------KRKVNY------------------------ 413 (805)
T ss_pred CCeEEEec-cccCCCCHHHHHHHHHHHHHHcCCC----------------CCceEE------------------------
Confidence 4555433 7899999999999999999999873 122221
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccch
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDI 2078 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~ 2078 (2492)
+++|||||||||||+|||+|+|++||.+.+...+++.++++.+...|.+.|+...
T Consensus 414 ------------------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~- 468 (805)
T PRK00390 414 ------------------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKH- 468 (805)
T ss_pred ------------------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhc-
Confidence 1469999999999999999999999976666677777777766667766666433
Q ss_pred hhhc----CCCccCceecccccccccccCcchhhhccCC--------ccccCCcCceeeecccchh-------hhhHHHH
Q psy15223 2079 KEFL----GDDAVNYKKSNDTLDVWFDSGITHQTVIRGS--------HKKQLIFPADLYLEGSDQH-------RGWFHSS 2139 (2492)
Q Consensus 2079 ~~~~----~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~--------~~~~~~~P~Dl~~~G~D~~-------r~wf~~~ 2139 (2492)
.+++ +.++..++|++|||||||||||++..+.... +.+++|||+|+|++|.||+ |+| ++.
T Consensus 469 ~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~-~~~ 547 (805)
T PRK00390 469 PEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFF-TKV 547 (805)
T ss_pred hhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHH-HHH
Confidence 2332 2235679999999999999997766554332 2336889999999999998 544 444
Q ss_pred HHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHH
Q psy15223 2140 LLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETY 2218 (2492)
Q Consensus 2140 l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~ 2218 (2492)
|.....+.+++||++|++|||| |||||+||+|+|.+++++||||++|||+++ +++++|++|+++.++++.+.+
T Consensus 548 l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l 621 (805)
T PRK00390 548 LRDLGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFL 621 (805)
T ss_pred HHHhhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHH
Confidence 4444446789999999999999 999999999999999999999999999997 689999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhh
Q psy15223 2219 RRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 2298 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K 2298 (2492)
+++||++++.+++...++. ....+|+|+++++++++++++++|++|+|++|++.+++|++ +++++|
T Consensus 622 ~kl~~~~~~~~~~~~~~~~--------~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n-~lsk~~----- 687 (805)
T PRK00390 622 QRVWRLVVDAKGEAGALDV--------AALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN-ALYKAE----- 687 (805)
T ss_pred HHHHHHHHHhhhcccccCc--------ccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH-----
Confidence 9999999996655433321 23468999999999999999999999999999999999994 677665
Q ss_pred hhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCc
Q psy15223 2299 DRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2299 ~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
.++++.+++++++.+++||+|||||+|||||+.|+.. +||+.++||+.++
T Consensus 688 ------------~~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~-------~sv~~~~wP~~~~ 737 (805)
T PRK00390 688 ------------DEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE-------GSIANAPWPTADE 737 (805)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-------CeeEecCCCCCCH
Confidence 0346779999999999999999999999999999643 6899999998654
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-117 Score=1205.92 Aligned_cols=633 Identities=22% Similarity=0.342 Sum_probs=523.1
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|++++|||||||.|||||++|++++||++||+||+||+|+|++||||||||||.+|++. +.+|.+ |+.
T Consensus 32 ~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~---g~~~~~-------~~~ 101 (805)
T PRK00390 32 KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKT---GTHPAE-------WTY 101 (805)
T ss_pred CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHc---CCCHHH-------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999875 667654 999
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc-eeccEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK-KYDFSI 608 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~-~~~~s~ 608 (2492)
++++.|+++|++||+++||+++|.|+||+|+++++++|.+|+++|+||++.+||+|||.|+|+||++||+... ..+.+.
T Consensus 102 ~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~ 181 (805)
T PRK00390 102 ENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAP 181 (805)
T ss_pred HHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998531 333344
Q ss_pred EEEee-------cCCch-hhh----------------------------hhhccCCCCCCCeEEEEEecCCcccccccEE
Q psy15223 609 YVGFS-------FSEPE-KIK----------------------------SIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 652 (2492)
Q Consensus 609 yv~f~-------~~~~~-~~~----------------------------~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai 652 (2492)
+++++ +.+-. .+. -.|.+ .+.+.+++||||||||||||+||
T Consensus 182 ~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~---~~~~~~l~v~TTrPeTl~g~~ai 258 (805)
T PRK00390 182 VEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKV---EDSDEKIEVFTTRPDTLFGATYL 258 (805)
T ss_pred eEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEc---cCCCCEEEEEeCCchHhhcceEE
Confidence 44332 11100 000 00111 12246899999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcE-EEEEecccccCCEEecCCcccccCCCceecEEecCCcc
Q psy15223 653 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI-IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731 (2492)
Q Consensus 653 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~ 731 (2492)
||||+++|+.+..++ . . .++++++++....+++... +.+++|. |.|++|.||++ ++++||+.++||+
T Consensus 259 av~p~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~------~~~ipi~~~~~V~ 326 (805)
T PRK00390 259 VLAPEHPLVEKLAEQ---N-P-AVAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLT------GEKIPVWIADYVL 326 (805)
T ss_pred EECCCChhHHhhhcc---h-H-HHHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCC------CCeeeEEEecccc
Confidence 999999998776432 1 1 2455555554444444332 3688996 99999999998 8899999999999
Q ss_pred cCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCC--------------cccccCCCCCCcchhhchHHHHHHHH
Q psy15223 732 VDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG--------------NFISTLPLFGGMSIWKASKLICSYLK 797 (2492)
Q Consensus 732 ~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G--------------~~~~~~~~~~G~~v~~a~~~i~~~L~ 797 (2492)
++.|||+||+|||||++||++|++||| +++++||++| +|++. +.|+|+++++|++.|++.|+
T Consensus 327 ~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~~~~i~~~g~~~~~~~~~~~~~g~~~~~-~~~~Gl~~~~a~~~Ii~~L~ 402 (805)
T PRK00390 327 MDYGTGAVMAVPAHDQRDFEFAKKYGL---PIKPVIEPGDGDEDISEEAYTGDGVLINS-GELDGLDSEEAKEAIIAWLE 402 (805)
T ss_pred CCCCCCeEEEcCCCCHHHHHHHHHcCC---CceeeeCCCCcccccccccccCCeEEEec-cccCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999 7778887544 44432 78999999999999999999
Q ss_pred hcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCe
Q psy15223 798 KSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDW 877 (2492)
Q Consensus 798 ~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DW 877 (2492)
+.|.+ ++++.| +++||
T Consensus 403 ~~g~~----------------~~~v~~------------------------------------------------~l~DW 418 (805)
T PRK00390 403 EKGLG----------------KRKVNY------------------------------------------------RLRDW 418 (805)
T ss_pred HcCCC----------------CCceEE------------------------------------------------ECCCc
Confidence 99873 223322 13699
Q ss_pred eeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcC----CCccCceecCCccccccccc
Q psy15223 878 TISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG----DDAVNYKKSNDTLDVWFDSG 953 (2492)
Q Consensus 878 cISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~----~~~~~~~~~~dvlDvWfdSg 953 (2492)
||||||+||+|||+|||++||.+.+...++..++++.+...|.+.|+... .+++. .++..++|++|||||||||+
T Consensus 419 ~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~re~Dv~DtwfdSs 497 (805)
T PRK00390 419 GISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKH-PEWVNVTCPKCGKPARRETDTMDTFVGSS 497 (805)
T ss_pred cccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhc-hhhhCCCccccCCCceeCCcccccccccc
Confidence 99999999999999999999986556667777777777777877776433 23332 23467999999999999998
Q ss_pred cccchhccc--------CccccCCcCeeeeecccccc-------hhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCcc
Q psy15223 954 ITHQTVIRG--------SHKKQLIFPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKK 1018 (2492)
Q Consensus 954 ~~~~~~~~~--------~~~~~~~~p~Dl~~~G~D~~-------rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~K 1018 (2492)
+++...... ++.+++|||+|+|++|+||+ |+| ++.|.....+.+++||++|++|||+ |
T Consensus 498 w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~-~~~l~~~~~~~~~~Pfk~v~~~G~v------K 570 (805)
T PRK00390 498 WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFF-TKVLRDLGLVSSDEPFKKLLTQGMV------K 570 (805)
T ss_pred cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHH-HHHHHHhhcccCCcchhhheecCcE------E
Confidence 554433321 12237899999999999998 644 4555544446789999999999999 9
Q ss_pred ccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccc
Q psy15223 1019 MSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDM 1097 (2492)
Q Consensus 1019 MSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~ 1097 (2492)
||||+||+|+|.+++++||||++|||+++ +++++|++|+++.++++.++++|++|++++.+++...++. ..
T Consensus 571 MSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~--------~~ 642 (805)
T PRK00390 571 MSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALDV--------AA 642 (805)
T ss_pred eCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccCc--------cc
Confidence 99999999999999999999999999987 6899999999999999999999999999997666544321 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHH
Q psy15223 1098 VEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLR 1177 (2492)
Q Consensus 1098 ~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~ 1177 (2492)
...|+|+++++++++++++++|++|+|++|++.+++|++ +|+.+| .++++++++++++.+++
T Consensus 643 ~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n-~lsk~~-----------------~~~~~~~l~~~l~~l~~ 704 (805)
T PRK00390 643 LSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN-ALYKAE-----------------DEQDKAVLREALEILVR 704 (805)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999994 677766 13578899999999999
Q ss_pred HhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCc
Q psy15223 1178 LISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLP 1216 (2492)
Q Consensus 1178 lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~ 1216 (2492)
+|+||+||+|||+|+.|+.. +||+.+.||+.+
T Consensus 705 lLaPf~P~iaEElw~~L~~~-------~sv~~~~wP~~~ 736 (805)
T PRK00390 705 LLAPFAPHLAEELWEKLGHE-------GSIANAPWPTAD 736 (805)
T ss_pred HHhhhhhHHHHHHHHHcCCC-------CeeEecCCCCCC
Confidence 99999999999999999642 699999999754
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-116 Score=1199.18 Aligned_cols=639 Identities=25% Similarity=0.384 Sum_probs=524.0
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
++++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||||||.+|++. +++|.+
T Consensus 25 ~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~---g~~p~~------ 95 (842)
T TIGR00396 25 DSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKR---GIHPAK------ 95 (842)
T ss_pred CCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHc---CCCHHH------
Confidence 35678899999999999999999999999999999999999999999999999999999999875 677865
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc---
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK--- 602 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~--- 602 (2492)
|+.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++||||++.+||+|||.|+|+||++||++..
T Consensus 96 -~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~ 174 (842)
T TIGR00396 96 -WTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSW 174 (842)
T ss_pred -HHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996422
Q ss_pred eeccEE--------EEEe---e--cCC--------ch--------------hhhhhhccCCCCCCCeEEEEEecCCcccc
Q psy15223 603 KYDFSI--------YVGF---S--FSE--------PE--------------KIKSIFNLKNLPSGKGYIVIWTSTPWTIP 647 (2492)
Q Consensus 603 ~~~~s~--------yv~f---~--~~~--------~~--------------~~~~~~~~~~~~~~~~~~~iwTTtPwTl~ 647 (2492)
..++++ |++. . +.+ ++ ...-.|.+ .+.+.+++||||||||||
T Consensus 175 ~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~---~~~~~~l~v~TTrP~Tl~ 251 (842)
T TIGR00396 175 RGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKI---ADHKEKIAVFTTRPDTIF 251 (842)
T ss_pred cCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEc---CCCCCEEEEEeCCcHHhh
Confidence 111222 3321 0 000 00 00000111 112358999999999999
Q ss_pred cccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC----CcCcEEEEEecccccCCEEecCCcccccCCCceec
Q psy15223 648 ANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG----FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSP 723 (2492)
Q Consensus 648 ~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~----~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p 723 (2492)
||+||||||+++|+.+.... .+.++.+.++.. .+...+.+.+|..|.|++|.||++ ++.+|
T Consensus 252 g~~~iav~p~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~------~~~ip 316 (842)
T TIGR00396 252 GVTYLALAPEHPLVEKIAEN---------NPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLT------GEKIP 316 (842)
T ss_pred hccEEEECCCCHHHHhhhcc---------hHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCC------CCEeE
Confidence 99999999999998764211 233445544432 122223466788899999999998 88999
Q ss_pred EEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC------------CCCcccccCCCCCCcchhhchHH
Q psy15223 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM------------DDGNFISTLPLFGGMSIWKASKL 791 (2492)
Q Consensus 724 ii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd------------~~G~~~~~~~~~~G~~v~~a~~~ 791 (2492)
|+.++||+++.|||+||+|||||++||++|++||| +++++|| ++|+|++ .+.|.|+++.+|++.
T Consensus 317 i~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~~~A~~~ 392 (842)
T TIGR00396 317 IWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL---PIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNSSEAREA 392 (842)
T ss_pred EEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC---CcceeeCCcccccccccccCCceEec-chhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999 7778887 3778875 488999999999999
Q ss_pred HHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHH
Q psy15223 792 ICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMI 871 (2492)
Q Consensus 792 i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l 871 (2492)
|++.|+++|.+. +|++|
T Consensus 393 Ii~~L~~~g~~~----------------~~v~y----------------------------------------------- 409 (842)
T TIGR00396 393 IIAMLEKEGKGK----------------RKVNY----------------------------------------------- 409 (842)
T ss_pred HHHHHHHcCCCC----------------ceEEe-----------------------------------------------
Confidence 999999998732 22221
Q ss_pred hcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCc--------cccccCchhhcCCCccCceecC
Q psy15223 872 LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE--------IWQNLDIKEFLGDDAVNYKKSN 943 (2492)
Q Consensus 872 ~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~--------~w~~~~~~~~~~~~~~~~~~~~ 943 (2492)
+++||||||||+||+|||+|||++||.+.+...++..++++.+...|.+ .|.... ++..+..+.|++
T Consensus 410 -rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~----cp~cg~~~~ret 484 (842)
T TIGR00396 410 -RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVT----CPSCGKPALRET 484 (842)
T ss_pred -ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCc----CccCCCCcEeCC
Confidence 1469999999999999999999999986545667777777666655532 233222 222345799999
Q ss_pred CccccccccccccchhcccC--------ccccCCcCeeeeecccccc-------hhhHHHHHHHHHHhcCCCCceEEEEe
Q psy15223 944 DTLDVWFDSGITHQTVIRGS--------HKKQLIFPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKALLTH 1008 (2492)
Q Consensus 944 dvlDvWfdSg~~~~~~~~~~--------~~~~~~~p~Dl~~~G~D~~-------rgwf~s~l~~~~~~~~~~p~k~v~~h 1008 (2492)
|||||||||||++....... ...++|||+|+|++|.||+ |||+ ++|....++.+++||++|++|
T Consensus 485 DtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~-~~l~~~~~~~~~~Pfk~l~~~ 563 (842)
T TIGR00396 485 DTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWH-KFLYDIGYVSTKEPFKKLINQ 563 (842)
T ss_pred CCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHH-HHHHhccccCCCccHHHHhcc
Confidence 99999999997665433211 1236799999999999996 8864 777777788899999999999
Q ss_pred eEEEc----CCCc---------------------------cccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 1009 GFVVD----SKGK---------------------------KMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 1009 G~vld----~~G~---------------------------KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
|||+| ++|+ |||||+||+|+|.+++++||+|++|||+++ +++++|++|
T Consensus 564 G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~ 643 (842)
T TIGR00396 564 GMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEW 643 (842)
T ss_pred ceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCcc
Confidence 99999 8999 999999999999999999999999999995 689999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHH
Q psy15223 1057 SNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE-FHMIVSKLQIYC 1135 (2492)
Q Consensus 1057 s~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~-f~~a~~~l~~f~ 1135 (2492)
+++.++++.++++||||+++++++++.++.. .....+...|+|+++++++++++++++|++|+ |++|++.+++|+
T Consensus 644 ~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~----~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~ 719 (842)
T TIGR00396 644 NDSGLEGARRFLDRVWNLFYNILGELDGKTY----LTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL 719 (842)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998887755321 11223567999999999999999999999999 999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCC
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 1215 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~ 1215 (2492)
+ +|++. . + ..++++++..+++|||||+||+|||+|+.|+.. ..||+.+.||+.
T Consensus 720 n-~L~~~-~---~----------------~~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~------~~sv~~~~wP~~ 772 (842)
T TIGR00396 720 N-ALYKA-K---K----------------DALYLEYLKGFLTVLSPFAPHLAEELWEKLGSE------PFIIKQAKWPKV 772 (842)
T ss_pred H-HHHhh-h---h----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCC------CCeeecCCCCCC
Confidence 4 55541 0 0 136899999999999999999999999999742 258999999985
Q ss_pred c
Q psy15223 1216 P 1216 (2492)
Q Consensus 1216 ~ 1216 (2492)
+
T Consensus 773 d 773 (842)
T TIGR00396 773 D 773 (842)
T ss_pred C
Confidence 4
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-114 Score=1173.91 Aligned_cols=647 Identities=20% Similarity=0.308 Sum_probs=506.0
Q ss_pred cCCCCcEEEEcCCCCCCCc-ccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGD-IHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 524 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~-lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~ 524 (2492)
+.++++|++++|||||||. |||||++|++++|+++||+||+||+|+|+|||||||||||.+|.+. +..|.+
T Consensus 106 ~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~---g~~p~~----- 177 (963)
T PLN02563 106 DTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKI----- 177 (963)
T ss_pred cCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHc---CCChHH-----
Confidence 4577899999999999997 9999999999999999999999999999999999999999998774 566655
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccc-ce
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK-KK 603 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~-~~ 603 (2492)
++.++++.|++||++||+++||+++|.|+||+|+++++|+|.+|+++|||||+.++|+|||.|+|+||++||++. ..
T Consensus 178 --~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~ 255 (963)
T PLN02563 178 --TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSE 255 (963)
T ss_pred --hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999985 33
Q ss_pred eccEEEEEeecCC---------------------chhhhh--------------hhccCCCC--CCCeEEEEEecCCccc
Q psy15223 604 YDFSIYVGFSFSE---------------------PEKIKS--------------IFNLKNLP--SGKGYIVIWTSTPWTI 646 (2492)
Q Consensus 604 ~~~s~yv~f~~~~---------------------~~~~~~--------------~~~~~~~~--~~~~~~~iwTTtPwTl 646 (2492)
.+.+.++++++.. ++.+.. .|.+.... ..+.+++|||||||||
T Consensus 256 ~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl 335 (963)
T PLN02563 256 RGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTL 335 (963)
T ss_pred CCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHH
Confidence 3433333333321 000000 01111000 0246899999999999
Q ss_pred ccccEEEEcCCCCEEEEEecCCCC---ceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceec
Q psy15223 647 PANQALHVHPEFDYALVHIKNDPP---LLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSP 723 (2492)
Q Consensus 647 ~~n~ai~v~p~~~Y~~~~~~~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p 723 (2492)
|||+||+|||+++|+.+....+.. +.|+.+..+...+. +. .....++..|.|+++.||++ ++.+|
T Consensus 336 ~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~-~~-----~~~~~k~g~~~g~~~~~P~~------~~~iP 403 (963)
T PLN02563 336 FGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLE-RT-----ELQKEKTGVFTGSYAINPAT------GEAIP 403 (963)
T ss_pred hhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHh-hh-----hccceecccccCcEEeccCC------CCeeE
Confidence 999999999999998544322100 12222222222221 11 11345677899999999998 88999
Q ss_pred EEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC---CC-----CcccccC-----C----CCCCcchh
Q psy15223 724 IYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM---DD-----GNFISTL-----P----LFGGMSIW 786 (2492)
Q Consensus 724 ii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd---~~-----G~~~~~~-----~----~~~G~~v~ 786 (2492)
|+.++||+++.|||+||+|||||++||++|++||| +++++|+ ++ |.|+++. + .|.|+.++
T Consensus 404 I~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~L---pi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~ 480 (963)
T PLN02563 404 IWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDL---PIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSK 480 (963)
T ss_pred EEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCC---CceeeeccCccccccccccccCceeEecCCCcccccCCcCHH
Confidence 99999999999999999999999999999999999 5666663 22 4454432 3 39999999
Q ss_pred hchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHH
Q psy15223 787 KASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDR 866 (2492)
Q Consensus 787 ~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~r 866 (2492)
+|++.|++.|++.|.+.+ .++|
T Consensus 481 eA~~~Ii~~L~~~g~~~~--------------------------------------------------~v~y-------- 502 (963)
T PLN02563 481 EAAKKVIEWLEETGNGKK--------------------------------------------------KVNY-------- 502 (963)
T ss_pred HHHHHHHHHHHhCCCCCC--------------------------------------------------eeEe--------
Confidence 999999999999988521 1222
Q ss_pred HHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCc-HHHHHHHHH--HHhhcCCccccccCchhhc----CCCccCc
Q psy15223 867 LKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKT-LELIELIAK--KIELNGIEIWQNLDIKEFL----GDDAVNY 939 (2492)
Q Consensus 867 l~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~g~~~w~~~~~~~~~----~~~~~~~ 939 (2492)
+++||||||||+||+|||+|||++||+.++.. .++...+.+ .+...|...|.-....+++ +.++..+
T Consensus 503 ------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~ 576 (963)
T PLN02563 503 ------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPA 576 (963)
T ss_pred ------cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCc
Confidence 36899999999999999999999999654332 233333432 2233454444333333333 2335679
Q ss_pred eecCCccccccccccccchhcccCcc--------ccCCcCeeeeecccccc-------hhhHHHHHHHHHHhcCCCCceE
Q psy15223 940 KKSNDTLDVWFDSGITHQTVIRGSHK--------KQLIFPADLYLEGSDQH-------RGWFHSSLLTSIILNKSAPYKA 1004 (2492)
Q Consensus 940 ~~~~dvlDvWfdSg~~~~~~~~~~~~--------~~~~~p~Dl~~~G~D~~-------rgwf~s~l~~~~~~~~~~p~k~ 1004 (2492)
+|++|||||||||++++.......+. .++|+|+|+|++|.||+ ||||++++..++ +.+++||++
T Consensus 577 ~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ 655 (963)
T PLN02563 577 RRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQC 655 (963)
T ss_pred EECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHH
Confidence 99999999999998777655532211 14799999999999995 999999998888 578999999
Q ss_pred EEEeeEEEc---------CCCc---------------------------------------------cccccCCCccCcc
Q psy15223 1005 LLTHGFVVD---------SKGK---------------------------------------------KMSKSKGNIIKPQ 1030 (2492)
Q Consensus 1005 v~~hG~vld---------~~G~---------------------------------------------KMSKS~GN~i~p~ 1030 (2492)
|++||||+| ++|+ |||||+||+|+|.
T Consensus 656 ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~ 735 (963)
T PLN02563 656 LVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPD 735 (963)
T ss_pred HhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHH
Confidence 999999998 7777 9999999999999
Q ss_pred hhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHH
Q psy15223 1031 KLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINIT 1109 (2492)
Q Consensus 1031 ~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~ 1109 (2492)
++|++||||+||||+++. +..+|..|+.+.++.+.++++|+||++.....+...+.+. ... .....|+|++++++
T Consensus 736 eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~--~~~--~~~~~d~~ll~kl~ 811 (963)
T PLN02563 736 DVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDG--TVV--TDEEPSLEQLRLLH 811 (963)
T ss_pred HHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCcc--ccc--cCCcchHHHHHHHH
Confidence 999999999999999964 5677889999999999889999988876542211122211 111 11346899999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q psy15223 1110 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 1189 (2492)
Q Consensus 1110 ~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEe 1189 (2492)
+++++++++|++|+|++|++++++|++ .++++ + ..+++++..+++||+||+||+|||
T Consensus 812 ~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~--------------~--------~~~~~~l~~ll~LLaPf~PhiaEE 868 (963)
T PLN02563 812 KCIAKVTEEIESTRFNTAISAMMEFTN-AAYKW--------------D--------KVPREAIEPFVLLLSPYAPHLAEE 868 (963)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCc--------------h--------HHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999999999999999995 34321 0 134678999999999999999999
Q ss_pred HHHHccCCCccccCCCceeeccCCCCc
Q psy15223 1190 AWSIFSDKNFYIESGETIFTQLHYKLP 1216 (2492)
Q Consensus 1190 iw~~l~~~~~~~~~~~SV~~~~wp~~~ 1216 (2492)
||+.|+.. +||+.+.||+.+
T Consensus 869 LW~~Lg~~-------~sv~~~~WP~~d 888 (963)
T PLN02563 869 LWFRLGHS-------NSLAYEPWPEAN 888 (963)
T ss_pred HHHHcCCC-------CeeeeCCCCCCC
Confidence 99999743 699999999854
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-102 Score=1013.09 Aligned_cols=671 Identities=23% Similarity=0.343 Sum_probs=522.8
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCC-CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINR-PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~-~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
.++..++|+|||++|+++++|+... +.++ +|||+++|+|||||.|||||++|||+.||++||+||+|||||||||||
T Consensus 4 ~y~~~~IE~KWQ~~W~e~~~Fe~~~--d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 4 RYNPREIEEKWQKRWEEAKVFEADE--DSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred ccchHHHHHHHHHHHHhcCCcccCC--CCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccc
Confidence 4556689999999999999998743 3333 699999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1648 CHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
++|||||..|++. +.+|.. |+++||+.|++||++||+|+||+|+|.|+||+|++++||+|.+|+++||||
T Consensus 82 afGlPae~~A~~~---~~~P~~-------wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y 151 (814)
T COG0495 82 AFGLPAENAAIKI---GTDPAK-------WTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAY 151 (814)
T ss_pred ccCchHHHHHHHh---CCChHH-------HHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEE
Confidence 9999999999987 778876 999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCcccccccccce------eee----cceEEEEEeccC--------------chhhH----hhhccCCC
Q psy15223 1728 HGLKPVNWCFDCKSALAEAEIEYK------KKY----DFSIYVGFSFSE--------------PEKIK----SIFNLKNL 1779 (2492)
Q Consensus 1728 r~~~~v~wcp~~~t~Lad~Evey~------~~~----~~~~yv~f~~~~--------------~~~~~----~~~~~~~~ 1779 (2492)
++..+|||||.|+|+|||+||... ... -++|++++.-.. ++.+. ++++.+.+
T Consensus 152 ~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g 231 (814)
T COG0495 152 RKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEG 231 (814)
T ss_pred eccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCC
Confidence 999999999999999999999855 222 345555543111 11111 23332221
Q ss_pred ------CCC---ccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCc--eE---E
Q psy15223 1780 ------PSG---KGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGN--II---G 1845 (2492)
Q Consensus 1780 ------~~~---~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~--~v---~ 1845 (2492)
.+. ...+.|+||||.|++|.+.+++.|+++.+...+.+ ..- ..+.++.+....... .+ .
T Consensus 232 ~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~---~~~----~~~a~fv~~~~~~~~~~~~~~~~ 304 (814)
T COG0495 232 YEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTN---PQT----PLVAEFVDECKGTGVVESVPAHA 304 (814)
T ss_pred eEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcC---ccc----hhHHHHHHHhcCCCceeeeeccC
Confidence 011 35799999999999999999999998765333322 000 223333332221111 11 3
Q ss_pred EEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC-------
Q psy15223 1846 ICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM------- 1918 (2492)
Q Consensus 1846 ~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd------- 1918 (2492)
+.+|.. .|.+++||++ +..+||+.++||.+.+|||+||.+|||+..||++|++|+++..+++.+.+
T Consensus 305 ~k~gv~-~g~~a~~p~~------~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~ 377 (814)
T COG0495 305 EKDGVF-LGGYAINPVN------GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVY 377 (814)
T ss_pred CCccee-ccccccCCCC------CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCccccee
Confidence 355654 4578899999 88999999999999999999999999999999999999994333332222
Q ss_pred -CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1919 -DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1919 -~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
++|.+. +.+.|.|+...+|...++..|.+ +...|||+++..
T Consensus 378 ~~~g~li-nS~~~~gl~~e~a~~~~~~~l~~--------------------------~~~~q~~v~Y~l----------- 419 (814)
T COG0495 378 EGEGVLI-NSGGLDGLDYEEAKVKIRCGLVK--------------------------RGLGQWFVNYRL----------- 419 (814)
T ss_pred ccCceEe-ccccccCcchhHHHHHHHHhHHH--------------------------hcCCceEEeccc-----------
Confidence 244433 34567777777565555554443 456899999976
Q ss_pred HHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCc-------
Q psy15223 1998 SAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI------- 2070 (2492)
Q Consensus 1998 ~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~------- 2070 (2492)
+||++||||+||.|||+++|+.|+..+...+.+...+++...-.|.
T Consensus 420 ---------------------------rdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~ 472 (814)
T COG0495 420 ---------------------------RDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWD 472 (814)
T ss_pred ---------------------------chHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCC
Confidence 5999999999999999999999998765555565555555444333
Q ss_pred ccccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc---------ccCCcCceeeecccchhhhhHHHHHH
Q psy15223 2071 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---------KQLIFPADLYLEGSDQHRGWFHSSLL 2141 (2492)
Q Consensus 2071 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---------~~~~~P~Dl~~~G~D~~r~wf~~~l~ 2141 (2492)
+.|...++ + .....|++||||+|++|+|++..+.+.... +++|||+|+|++|+||+-.|+-.+.+
T Consensus 473 ~~W~~~s~----~--~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF 546 (814)
T COG0495 473 EEWVIESL----P--DSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRF 546 (814)
T ss_pred cceEEEec----C--CCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHH
Confidence 33433332 2 267899999999999999999888754332 37899999999999999888777777
Q ss_pred HHHHhc------CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH
Q psy15223 2142 TSIILN------KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 2214 (2492)
Q Consensus 2142 ~~~~l~------~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~ 2214 (2492)
.+.+++ .++||++++++|||+..+|+|||||+||+|+|++++++||||++|+|+++ ++..+|++|+++.++.+
T Consensus 547 ~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~ 626 (814)
T COG0495 547 FHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA 626 (814)
T ss_pred HHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHH
Confidence 777775 46899999999999966899999999999999999999999999999996 68899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2215 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRM-YEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~-~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
.++++|+|+.+.......... ........|+|+++++ ++.+++.++. +.|+.|+..+|.|++ .| .+|
T Consensus 627 ~rfL~r~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~l-~~~ 694 (814)
T COG0495 627 RRFLQRVWNLVKEHLEKLVEE-------LTKEQGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-AL-RKY 694 (814)
T ss_pred HHHHHHHHHHHHHhhhccccc-------ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHH
Confidence 999999999887665432110 0111115678877766 4556666665 999999999999994 44 445
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccC
Q psy15223 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVY 2369 (2492)
Q Consensus 2294 le~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~ 2369 (2492)
..... ..+ .++.+++..+++||+||+||+|||+|+.|++. ++|+.++||+.++..
T Consensus 695 ~~~~~----------~~~----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~-------~~v~~~~wP~~de~~ 749 (814)
T COG0495 695 LRRTE----------GDR----KVLREALETWVRLLAPFAPHIAEELWEELGNE-------GFVSNAPWPEPDEEA 749 (814)
T ss_pred Hhccc----------chH----HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC-------CceeeCCCCCCChhh
Confidence 43211 111 57889999999999999999999999999863 389999999987643
|
|
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-98 Score=902.18 Aligned_cols=664 Identities=20% Similarity=0.285 Sum_probs=504.0
Q ss_pred CCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHH
Q psy15223 1574 KREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPI 1653 (2492)
Q Consensus 1574 ~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPi 1653 (2492)
.+|+.|+++|.+...|.. +.+.+++| ||++|+|||+|.|||||.+.||++|+++||+||+||+|++|||||.+|||+
T Consensus 34 ~iEk~W~~~~~~~~~~~~--~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPA 110 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSK--DSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPA 110 (876)
T ss_pred HHHHHHHHHHhcCCcccc--ccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCch
Confidence 789999999998877654 44567778 677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCccc
Q psy15223 1654 EIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 1733 (2492)
Q Consensus 1654 e~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v 1733 (2492)
|++|.+. +++|.. |+.+||++|++|+++||+++||||+..|++|+|++|+||+|.+||++||+||...+|
T Consensus 111 ENAAier---gv~P~s-------WT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~V 180 (876)
T KOG0435|consen 111 ENAAIER---GVHPAS-------WTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEV 180 (876)
T ss_pred hhHHHhc---CCCchh-------hhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcccccc
Confidence 9999776 889887 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccccccee-----------eecceEEEEEeccCc------hh------h----HhhhccCCC-------
Q psy15223 1734 NWCFDCKSALAEAEIEYKK-----------KYDFSIYVGFSFSEP------EK------I----KSIFNLKNL------- 1779 (2492)
Q Consensus 1734 ~wcp~~~t~Lad~Evey~~-----------~~~~~~yv~f~~~~~------~~------~----~~~~~~~~~------- 1779 (2492)
||||.++|+||+++|.-.. +.-.+|+++.+-... +. + .+++|...+
T Consensus 181 NWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~l 260 (876)
T KOG0435|consen 181 NWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPL 260 (876)
T ss_pred ccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEe
Confidence 9999999999999995221 112344444321110 00 1 123332211
Q ss_pred ---CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccE
Q psy15223 1780 ---PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKIN 1856 (2492)
Q Consensus 1780 ---~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~ 1856 (2492)
...+..|.||||||+||+|.+++++.|++..+.... ++.+.+. .-... + +|.. .+..
T Consensus 261 l~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~------------~lkefl~-~~~l~----~--Kg~~-lp~~ 320 (876)
T KOG0435|consen 261 LDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS------------SLKEFLS-KSDLP----Q--KGVQ-LPCQ 320 (876)
T ss_pred ccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhc------------hHHHhhh-hhhcc----c--cCcc-ccee
Confidence 223589999999999999999999999986443221 1111111 00000 1 2333 3467
Q ss_pred EeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc-cCCCCccccCCCCCCC-cc
Q psy15223 1857 FFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP-VMDDGNFISTLPLFGG-MS 1934 (2492)
Q Consensus 1857 ~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~-vd~~G~~~~~~~~~~G-~~ 1934 (2492)
+.||++ ++.+||+.++||...+|||+||.+|+|+.+|++++++.++.-...+++ .++.|+-+.. ..+.| +.
T Consensus 321 A~Np~t------g~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~-~~~tn~~~ 393 (876)
T KOG0435|consen 321 AKNPVT------GRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ-KAFTNLDI 393 (876)
T ss_pred eccCCC------CceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc-ccccchhH
Confidence 888888 999999999999999999999999999999999999966532222232 3455554432 34577 44
Q ss_pred HHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccch
Q psy15223 1935 IWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGK 2014 (2492)
Q Consensus 1935 v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~ 2014 (2492)
.++|...|++.+++.|..-.. + .
T Consensus 394 ~q~a~~~l~~~~~~~g~g~~~----------------v-----------------------------------------s 416 (876)
T KOG0435|consen 394 RQNAALKLFQFAERKGVGGYV----------------V-----------------------------------------S 416 (876)
T ss_pred HHHHHHHHHHHHHhcCCCcce----------------e-----------------------------------------c
Confidence 456788888888776632110 0 0
Q ss_pred hHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHH--HhhcC-----cccccccchhhhcCCCcc
Q psy15223 2015 DRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK--IELNG-----IEIWQNLDIKEFLGDDAV 2087 (2492)
Q Consensus 2015 ~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~--~~~~g-----~~~w~~~~~~~~~~~~~~ 2087 (2492)
. .++||.||||||||+|||+.+|++||.+++...+++..++++ +...| .+.|++..++. +++
T Consensus 417 ~-------kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~----cg~ 485 (876)
T KOG0435|consen 417 Y-------KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPR----CGE 485 (876)
T ss_pred c-------hhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCcc----CCC
Confidence 1 135999999999999999999999998877666766555533 22222 36777776543 456
Q ss_pred CceecccccccccccCcchhhhccCCccc--------cCCcCceeeecccchhhh------hHHHHHHHHHHhcCCcccc
Q psy15223 2088 NYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIFPADLYLEGSDQHRG------WFHSSLLTSIILNKSAPYK 2153 (2492)
Q Consensus 2088 ~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--------~~~~P~Dl~~~G~D~~r~------wf~~~l~~~~~l~~~~pfk 2153 (2492)
..+||+||||||+||+|+|++++++++.. .+|+|+|+|++|++|.-- +|+.++-...+....+||+
T Consensus 486 pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~ 565 (876)
T KOG0435|consen 486 PAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFT 565 (876)
T ss_pred cccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHH
Confidence 78999999999999999999999876532 578999999999999621 2233344444556789999
Q ss_pred EEEEeeeEEcC------CC-------------------------------ceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2154 ALLTHGFVVDS------KG-------------------------------KKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2154 ~v~~hG~vld~------~G-------------------------------~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.++++|||+.. .| +|||||++|+|+|.+++.+||+|++|+|++
T Consensus 566 ~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~il 645 (876)
T KOG0435|consen 566 KLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYIL 645 (876)
T ss_pred HHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHH
Confidence 99999999631 22 699999999999999999999999999999
Q ss_pred c-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccH
Q psy15223 2197 S-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEF 2274 (2492)
Q Consensus 2197 s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f 2274 (2492)
. +++.++++|+++.+..+.+.+.|+|+....++..-++-.+.............++-+.+..|.+++.++++|+ .+.+
T Consensus 646 f~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~sl 725 (876)
T KOG0435|consen 646 FAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSL 725 (876)
T ss_pred hhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 7899999999999999999999999988776654222222111122233355678899999999999999998 6889
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCC
Q psy15223 2275 HMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESG 2354 (2492)
Q Consensus 2275 ~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~ 2354 (2492)
+.|+..+|.|.| .|...| |.-+ ..+. .....+..++.+|+|++||+|+|+|..|+..
T Consensus 726 NtaIS~~m~ltN-~l~~a~----k~~~----~h~~-------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~------- 782 (876)
T KOG0435|consen 726 NTAISDMMGLTN-ALKKAL----KIVL----VHSP-------EFERALEALVIMLAPFAPHVASELWSALAND------- 782 (876)
T ss_pred HHHHHHHHHHHH-HHHHhh----hhhh----hcCh-------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc-------
Confidence 999999999984 455443 1111 0111 2345678889999999999999999999864
Q ss_pred CCe-eeccCCCCCcc
Q psy15223 2355 ETI-FTQLHYKLPKV 2368 (2492)
Q Consensus 2355 ~sV-~~~~wP~~~~~ 2368 (2492)
.+. ....||+.++.
T Consensus 783 ~~~~~~~~WP~vd~~ 797 (876)
T KOG0435|consen 783 LSWVSDVKWPEVDPD 797 (876)
T ss_pred ccchhccCCccCChh
Confidence 222 22369987654
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-90 Score=897.07 Aligned_cols=641 Identities=22% Similarity=0.333 Sum_probs=488.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
+||++++|+|||||.|||||++|||+.||++||+||+||||+||+|||++|||||..|++. +.+|.. |+.
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~---~~~P~~-------wt~ 103 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI---GTDPAK-------WTY 103 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh---CCChHH-------HHH
Confidence 5999999999999999999999999999999999999999999999999999999999987 778877 999
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccc------ce
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYK------KK 603 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~------~~ 603 (2492)
++++.+++||++||.++||+|++.|+||+|++++||+|.+|+++||||++..+|+|||.|+|+||++||... ..
T Consensus 104 ~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~ 183 (814)
T COG0495 104 YNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEP 183 (814)
T ss_pred HHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999855 22
Q ss_pred eccEEE--EEeecCCchh-hh---hhh----------------ccCC-------CCCC--CeEEEEEecCCcccccccEE
Q psy15223 604 YDFSIY--VGFSFSEPEK-IK---SIF----------------NLKN-------LPSG--KGYIVIWTSTPWTIPANQAL 652 (2492)
Q Consensus 604 ~~~s~y--v~f~~~~~~~-~~---~~~----------------~~~~-------~~~~--~~~~~iwTTtPwTl~~n~ai 652 (2492)
+.+--+ ..|++.+-.. +. ..+ +-.. ..+. ...+.|+||+|.|+.|.+.+
T Consensus 184 V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~ 263 (814)
T COG0495 184 VEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYV 263 (814)
T ss_pred eeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEE
Confidence 222222 2344433110 00 000 0000 0111 35789999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcEE-----EEEecccccCCEEecCCcccccCCCceecEEec
Q psy15223 653 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNII-----GICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 727 (2492)
Q Consensus 653 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~-----~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~ 727 (2492)
++-|+++.+-..+.+. . ..++.++.+...-.+... ...+|-. .|..+.||+. +..+||+.+
T Consensus 264 ~~a~~h~lv~~~~~~~--~-----~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~-~g~~a~~p~~------~e~iPi~~a 329 (814)
T COG0495 264 VLAPEHPLVGKLVTNP--Q-----TPLVAEFVDECKGTGVVESVPAHAEKDGVF-LGGYAINPVN------GEKIPVWIA 329 (814)
T ss_pred EEeCCchHHHHHhcCc--c-----chhHHHHHHHhcCCCceeeeeccCCCccee-ccccccCCCC------CCcCCEEEe
Confidence 9999987543222220 0 023333333322111111 2234433 3477889998 788999999
Q ss_pred CCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC--------CCCcccccCCCCCCcchhhchHHHHHHHHhc
Q psy15223 728 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM--------DDGNFISTLPLFGGMSIWKASKLICSYLKKS 799 (2492)
Q Consensus 728 ~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd--------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~ 799 (2492)
+||.+..|||+||.+|||+..||+.+++|+++..+++.+.+ ++|.+.+ .+.+.|+...+|...++..|
T Consensus 330 ~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~lin-S~~~~gl~~e~a~~~~~~~l--- 405 (814)
T COG0495 330 NYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLIN-SGGLDGLDYEEAKVKIRCGL--- 405 (814)
T ss_pred CcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEec-cccccCcchhHHHHHHHHhH---
Confidence 99999999999999999999999999999995443333322 2344322 24677777775544444433
Q ss_pred CCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeee
Q psy15223 800 KTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTI 879 (2492)
Q Consensus 800 g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcI 879 (2492)
+-+...|||+++.. +||++
T Consensus 406 -----------------------~~~~~~q~~v~Y~l--------------------------------------rdW~~ 424 (814)
T COG0495 406 -----------------------VKRGLGQWFVNYRL--------------------------------------RDWLK 424 (814)
T ss_pred -----------------------HHhcCCceEEeccc--------------------------------------chHHH
Confidence 33566899999865 59999
Q ss_pred eccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC-------ccccccCchhhcCCCccCceecCCcccccccc
Q psy15223 880 SRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI-------EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDS 952 (2492)
Q Consensus 880 SRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-------~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdS 952 (2492)
||||+||.|||+++|+.|+......+++...+++...-.|+ +.|...+ +......+++||||+|++|
T Consensus 425 srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s------~~~s~~~ret~Tm~~~~~s 498 (814)
T COG0495 425 SRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIES------LPDSTAYRETDTMDTFIDS 498 (814)
T ss_pred HHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEe------cCCCceeeehhhhhHhccc
Confidence 99999999999999999997653344443344443333333 2222222 1236788999999999999
Q ss_pred ccccchhcccCc---------cccCCcCeeeeecccccchhhHHHHHHHHHHhc------CCCCceEEEEeeEEEcCCCc
Q psy15223 953 GITHQTVIRGSH---------KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILN------KSAPYKALLTHGFVVDSKGK 1017 (2492)
Q Consensus 953 g~~~~~~~~~~~---------~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~------~~~p~k~v~~hG~vld~~G~ 1017 (2492)
++.+..+..... ++++|||+|+|++|+||+-.|+-.+.+.+.+++ ...||++++++|||+..+|+
T Consensus 499 swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~ 578 (814)
T COG0495 499 SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGE 578 (814)
T ss_pred ccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCC
Confidence 988877664322 237999999999999999888777777777765 46899999999999966899
Q ss_pred cccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q psy15223 1018 KMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISD 1096 (2492)
Q Consensus 1018 KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~ 1096 (2492)
|||||+||+|+|++++++||||++|+|+++ ++..+|++|+++.++.+.++++|+|+.+....+..... ....
T Consensus 579 KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-------~~~~ 651 (814)
T COG0495 579 KMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-------LTKE 651 (814)
T ss_pred ccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-------ccch
Confidence 999999999999999999999999999996 67889999999999999999999999887765433110 0111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHH
Q psy15223 1097 MVEIDKYAIINITNLQKEILSHYRM-YEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 1175 (2492)
Q Consensus 1097 ~~~~D~~il~~l~~~~~~v~~a~~~-~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l 1175 (2492)
....|+|+++++ ++.+++.++. +.|++|+..+|.|++ +| .+|..... ..+ .+|.+++..+
T Consensus 652 ~~~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~l-~~~~~~~~----------~~~----~~l~~~l~~~ 712 (814)
T COG0495 652 QGKEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-AL-RKYLRRTE----------GDR----KVLREALETW 712 (814)
T ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhccc----------chH----HHHHHHHHHH
Confidence 115677766554 5556666666 999999999999994 34 44443211 111 6788999999
Q ss_pred HHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCccc
Q psy15223 1176 LRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKV 1218 (2492)
Q Consensus 1176 ~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~ 1218 (2492)
++||+||+||+|||+|+.|+.. ++|+.+.||+.++.
T Consensus 713 v~lLaP~aPH~aEElW~~lg~~-------~~v~~~~wP~~de~ 748 (814)
T COG0495 713 VRLLAPFAPHIAEELWEELGNE-------GFVSNAPWPEPDEE 748 (814)
T ss_pred HHHhcccccHHHHHHHHHhcCC-------CceeeCCCCCCChh
Confidence 9999999999999999999853 48999999987653
|
|
| >KOG0437|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-87 Score=810.60 Aligned_cols=806 Identities=18% Similarity=0.221 Sum_probs=601.1
Q ss_pred ccCCCCchhHHHhhhcccchhcc--cccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1571 ELSKREPGWIKKWQEKKIYHQIR--KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1571 ~l~~~E~~~~~~W~~~~~~~~~~--~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
.+.++|.++|++|+++++|+... +.+++++||+++.|+||+||.||+||+++....|+..-|+||+|++|+||+||||
T Consensus 13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437|consen 13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccccc
Confidence 46789999999999999998754 2456789999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc---------------------------------------------------------CCCHHHHH
Q psy15223 1649 HGMPIEIQIEKLYGK---------------------------------------------------------NLSPIEIQ 1671 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~---------------------------------------------------------~~~~~e~~ 1671 (2492)
+|+||-+.|+|+... |++.+|+.
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437|consen 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhh
Confidence 999999988775210 45566666
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhcccccccCeeccCC--hHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCccccccc
Q psy15223 1672 NK--ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747 (2492)
Q Consensus 1672 ~~--~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~E 1747 (2492)
++ +..|...+.-....++++||.-+||+|.|.|+| |.|..+|.|+|.+|.+.|-|..|.+-..|||.+++++.||+
T Consensus 173 ~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 173 KFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred cccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 65 457888888888899999999999999999998 99999999999999999999999999999999999999999
Q ss_pred ccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhH
Q psy15223 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 1827 (2492)
Q Consensus 1748 vey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 1827 (2492)
....+.+.|+-|+..++.-.+.....+ .+..+..+|++.+|.||+||+|.++++|+|+.+|..++..+ ..+++|..+
T Consensus 253 R~sGEgV~PqeytliKle~le~~p~~l--~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~-~~e~fi~t~ 329 (1080)
T KOG0437|consen 253 RASGEGVGPQEYTLIKLEVLEPFPKAL--SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN-ETEVFIATE 329 (1080)
T ss_pred cccCCCCCcceEEEEEEEecccchhhc--cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecC-CceEEEeeh
Confidence 999999999999887765433211111 12224568999999999999999999999999999999876 336777655
Q ss_pred HhHHHHH-HHcCCcC---ceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHH
Q psy15223 1828 NLVKSCL-KKFGFKG---NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIF 1903 (2492)
Q Consensus 1828 ~~~~~~~-~~~~~~~---~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~ 1903 (2492)
..+.+.. ..+..+. ..+.+++|++|+|..+..|++. ...+-++|+..|..++|||+|.++|+..||||...
T Consensus 330 raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv-----~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al 404 (1080)
T KOG0437|consen 330 RAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSV-----YERVYALPMLTILATKGTGVVTSVPSDSPDDFAAL 404 (1080)
T ss_pred HHHhhcchhhccccCCcccceeeecchhhcCCcccCcchh-----hheeeeccceeeeccCCceeEEeCCCCCchhhhHH
Confidence 5554432 1111111 2348999999999999999985 34566999999999999999999999999999987
Q ss_pred HH-------cCCCCC-------Ccccc--------------------cC----------------CCCccccCCCCCCCc
Q psy15223 1904 KK-------QNMKDS-------DIINP--------------------VM----------------DDGNFISTLPLFGGM 1933 (2492)
Q Consensus 1904 ~~-------~~l~~~-------~~~~~--------------------vd----------------~~G~~~~~~~~~~G~ 1933 (2492)
+. ||+.++ |++.. -| .+|.|. .+.|.|.
T Consensus 405 ~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig~y~G~ 482 (1080)
T KOG0437|consen 405 QDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IGKYKGE 482 (1080)
T ss_pred HhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--Eeccccc
Confidence 43 455333 22211 01 134433 4789999
Q ss_pred cHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc
Q psy15223 1934 SIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG 2013 (2492)
Q Consensus 1934 ~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~ 2013 (2492)
+|.++++.|..+|.+.|.++.+.+.+..+ -.|||+.||+.+++|||+++.+ .+||..+.+++++++.+.+..
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~EPEkqV--mSRSGdeCiVAL~DQWYldYgE------~eWKk~a~~cLe~l~~f~dEt 554 (1080)
T KOG0437|consen 483 KVEDAKPKIKTDLIETGDALKYNEPEKQV--MSRSGDECIVALCDQWYLDYGE------AEWKKQAKECLENLNTFSDET 554 (1080)
T ss_pred cHHhhhhHHHHHHHhcccceeecCcchhh--hccCCCceEEEeccchhhhcCc------HHHHHHHHHHHhhhhccCHHH
Confidence 99999999999999999999988877665 4599999999999999999998 559999999999999999999
Q ss_pred hhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHH-HHHHHHHHhhcCcccccccchhhhcCCC--ccCce
Q psy15223 2014 KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL-IELIAKKIELNGIEIWQNLDIKEFLGDD--AVNYK 2090 (2492)
Q Consensus 2014 ~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~-~~~i~~~~~~~g~~~w~~~~~~~~~~~~--~~~~~ 2090 (2492)
|+-|...|+|+..|.|||..+.||+|||.-..-.+++..++.+. ...+++++.. ++-|.. +-.++
T Consensus 555 R~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~------------d~~g~~~~plgi~ 622 (1080)
T KOG0437|consen 555 RNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR------------DLYGKVEGPLGIK 622 (1080)
T ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHH------------hhccCCcccCCCC
Confidence 99999999999999999999999999983211112222122211 1223333221 111111 11223
Q ss_pred ecccccccc---cc-------cCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEee
Q psy15223 2091 KSNDTLDVW---FD-------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHG 2159 (2492)
Q Consensus 2091 ~~~dvlDvW---fd-------Sg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG 2159 (2492)
.+.-+=+|| |- +.++-......+.+|++|||.|++++|+|++.+|+...|+.+++++.+.-| +.+.++|
T Consensus 623 ~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNG 702 (1080)
T KOG0437|consen 623 PDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANG 702 (1080)
T ss_pred hhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCc
Confidence 333333444 21 222222222455677999999999999999999999999999999987666 7799999
Q ss_pred eEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy15223 2160 FVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPN 2238 (2492)
Q Consensus 2160 ~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~ 2238 (2492)
+++ .+++|||||.||+.+..+.|++||||+.|+.|+. ++..+|.||.+...+. ++-||++...++...+...+
T Consensus 703 HLm-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s-- 776 (1080)
T KOG0437|consen 703 HLM-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVEWIEEMCENRS-- 776 (1080)
T ss_pred eEE-ecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHH--
Confidence 998 8999999999999999999999999999999995 6888999998776443 45566666665544332211
Q ss_pred ccccccc-ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHH
Q psy15223 2239 INIIKIS-DMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTS 2317 (2492)
Q Consensus 2239 ~~~~~~~-~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~ 2317 (2492)
....+ .....||.+.+.+|.++....++|+...|..|+..-+.=+ ....++|-+.. . +.....+
T Consensus 777 --~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~-qaArD~Yrel~------g------~~mh~dL 841 (1080)
T KOG0437|consen 777 --SLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL-QAARDMYRELC------G------EGMHRDL 841 (1080)
T ss_pred --hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH-HHHHHHHHHHh------c------ccccHHH
Confidence 01111 1237899999999999999999999999999998533222 12344553321 1 1223457
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy15223 2318 IWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKL--LYKYMILKKIRSKVMQKLEKI 2395 (2492)
Q Consensus 2318 l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l--~~~~~~~~~~r~~v~~~i~~~ 2395 (2492)
+...+++.+.||+||+||+||.||+.+..+ ..||. .+||..++...-..+ ....+.+..+|......+-..
T Consensus 842 v~r~ietqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~-~~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~k 914 (1080)
T KOG0437|consen 842 VFRFIETQTLLLAPICPHLAEYIWRTVLKK------NFSVN-VGWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKK 914 (1080)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhccC------Cceee-cCCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchh
Confidence 888899999999999999999999998765 24454 499987764322111 133344555544443333222
Q ss_pred -HhcCCCC-CCceeEEEEEeChhhHHHHHHhHHHHHHhhhc
Q psy15223 2396 -RSTGIIG-SSLQAEIILKINKLDFEILNEFGEELKFFLLT 2434 (2492)
Q Consensus 2396 -R~~~~i~-~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~v 2434 (2492)
++.+... .+.+.+.+|+++.+..+.....-+.|..++.-
T Consensus 915 kkk~K~~~~~~~p~~~ti~Vae~fp~Wq~~cl~il~k~~~e 955 (1080)
T KOG0437|consen 915 KKKKKGAEVPSKPLKLTIYVAEEFPEWQAQCLSILQKIFCE 955 (1080)
T ss_pred hcccCCCCCCCCcceEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 2112111 23455677777665544444444444444433
|
|
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-87 Score=807.30 Aligned_cols=640 Identities=21% Similarity=0.298 Sum_probs=468.9
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
+.+++| +|++++|||+|.|||||.+.||+.|+++||+||+||+|++|+|||.+|||.|.+|.+. +++|..
T Consensus 54 d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAier---gv~P~s------ 123 (876)
T KOG0435|consen 54 DKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIER---GVHPAS------ 123 (876)
T ss_pred ccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhc---CCCchh------
Confidence 456677 5679999999999999999999999999999999999999999999999999999876 899988
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceec
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 605 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~ 605 (2492)
|..++|+.|++|+++||+++||||+..|++|+|++++||+|.+||++||.||...+|||||.++|+||+++|.-. +
T Consensus 124 -WT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~---G 199 (876)
T KOG0435|consen 124 -WTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDAD---G 199 (876)
T ss_pred -hhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhccc---C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999411 1
Q ss_pred cEE--------------EEEee-----cCCc-h------hhh--------------hhhccCCCCCCCeEEEEEecCCcc
Q psy15223 606 FSI--------------YVGFS-----FSEP-E------KIK--------------SIFNLKNLPSGKGYIVIWTSTPWT 645 (2492)
Q Consensus 606 ~s~--------------yv~f~-----~~~~-~------~~~--------------~~~~~~~~~~~~~~~~iwTTtPwT 645 (2492)
.|+ +++-. +.+. + .+. ..|.+...++.+..|.||||+|+|
T Consensus 200 ~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Pet 279 (876)
T KOG0435|consen 200 CSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPET 279 (876)
T ss_pred ccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchh
Confidence 111 11100 0000 0 000 001111112335789999999999
Q ss_pred cccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEE
Q psy15223 646 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIY 725 (2492)
Q Consensus 646 l~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii 725 (2492)
|++.+.+++.|++..+.... ++.+.+. .-.+. . +|- +.+..+.+|++ ++.+||+
T Consensus 280 l~~~~f~vl~~~H~L~~~~~------------~lkefl~-~~~l~----~--Kg~-~lp~~A~Np~t------g~~iPv~ 333 (876)
T KOG0435|consen 280 LFGASFLVLAPSHSLLDKDS------------SLKEFLS-KSDLP----Q--KGV-QLPCQAKNPVT------GRAIPVV 333 (876)
T ss_pred hccceEEEEcCCchhhhhhc------------hHHHhhh-hhhcc----c--cCc-ccceeeccCCC------CceeeEE
Confidence 99999999999987443221 1111111 10000 0 122 23356677777 9999999
Q ss_pred ecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc-cCCCCcccccCCCCCC-cchhhchHHHHHHHHhcCCee
Q psy15223 726 LGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP-VMDDGNFISTLPLFGG-MSIWKASKLICSYLKKSKTLF 803 (2492)
Q Consensus 726 ~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~-vd~~G~~~~~~~~~~G-~~v~~a~~~i~~~L~~~g~l~ 803 (2492)
.++||....|||+|+.+|+|+.+|++++++-++.....+++ .++.|+-+.. ..+.| +..++|...|++.++..|.--
T Consensus 334 ~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~~g~g~ 412 (876)
T KOG0435|consen 334 VADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAERKGVGG 412 (876)
T ss_pred EechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc-ccccchhHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999966532222222 2445554432 23456 333456667777766554311
Q ss_pred eeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccc
Q psy15223 804 NIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQR 883 (2492)
Q Consensus 804 ~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr 883 (2492)
. .- .. .++||.|||||
T Consensus 413 ~----~v-----------------------------------------------------s~-------kLkDWLiSRQR 428 (876)
T KOG0435|consen 413 Y----VV-----------------------------------------------------SY-------KLKDWLISRQR 428 (876)
T ss_pred c----ee-----------------------------------------------------cc-------hhhhhhhhhhh
Confidence 0 00 00 13599999999
Q ss_pred cCCceeeEEEECCCCccccCcHHHHHHHHHH--HhhcC-----CccccccCchhhcCCCccCceecCCcccccccccccc
Q psy15223 884 HWGVPIAFFIHKKSGKLHPKTLELIELIAKK--IELNG-----IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITH 956 (2492)
Q Consensus 884 ~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~--~~~~g-----~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~ 956 (2492)
+||+|||+++|++||.+.+...++.-.++++ +...| .+.|.+..++. .++.-+||+||||+|+||+|+|
T Consensus 429 yWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~----cg~pAkRETDTMDTFvDSsWYY 504 (876)
T KOG0435|consen 429 YWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPR----CGEPAKRETDTMDTFVDSSWYY 504 (876)
T ss_pred ccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCcc----CCCcccccccccchhhccceee
Confidence 9999999999999997654444433333322 12222 35666665543 3557799999999999999999
Q ss_pred chhcccCccc--------cCCcCeeeeecccccchhhH------HHHHHHHHHhcCCCCceEEEEeeEEEcC------CC
Q psy15223 957 QTVIRGSHKK--------QLIFPADLYLEGSDQHRGWF------HSSLLTSIILNKSAPYKALLTHGFVVDS------KG 1016 (2492)
Q Consensus 957 ~~~~~~~~~~--------~~~~p~Dl~~~G~D~~rgwf------~s~l~~~~~~~~~~p~k~v~~hG~vld~------~G 1016 (2492)
+.+++..+.. .+|+|+|+|++|++|.--|+ +..|-..-+..+..||+.++++|||... .|
T Consensus 505 lRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG 584 (876)
T KOG0435|consen 505 LRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESG 584 (876)
T ss_pred EeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCC
Confidence 9999765421 68999999999999973332 2223333345678999999999998621 12
Q ss_pred -------------------------------ccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccCHHHHHHH
Q psy15223 1017 -------------------------------KKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRV 1064 (2492)
Q Consensus 1017 -------------------------------~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs~~~l~~~ 1064 (2492)
+|||||++|+|+|.+++++||+|++|++++ +++++++++|+++.+..+
T Consensus 585 ~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi 664 (876)
T KOG0435|consen 585 KYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGI 664 (876)
T ss_pred ccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhH
Confidence 599999999999999999999999999988 578899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1065 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1065 ~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
.+.+.|+|++...++..-.+-.+.............++-+.+..|.+++.+++.|+ .+.++.|+..+|.|.| .|...+
T Consensus 665 ~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN-~l~~a~ 743 (876)
T KOG0435|consen 665 KRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTN-ALKKAL 743 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 99999999988777654222111111111222345667889999999999999999 6779999999999984 454433
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCce-eeccCCCCcc
Q psy15223 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETI-FTQLHYKLPK 1217 (2492)
Q Consensus 1144 l~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV-~~~~wp~~~~ 1217 (2492)
|.-+ ..+. .....|..++.+|+|++||+|+|+|+.|+.. .+. -...||+.++
T Consensus 744 ----k~~~----~h~~-------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~-------~~~~~~~~WP~vd~ 796 (876)
T KOG0435|consen 744 ----KIVL----VHSP-------EFERALEALVIMLAPFAPHVASELWSALAND-------LSWVSDVKWPEVDP 796 (876)
T ss_pred ----hhhh----hcCh-------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc-------ccchhccCCccCCh
Confidence 2111 0111 1234677889999999999999999999853 122 1125998654
|
|
| >KOG0437|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=724.51 Aligned_cols=784 Identities=18% Similarity=0.211 Sum_probs=582.1
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHh------Cc------
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY------GK------ 513 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~------~~------ 513 (2492)
.++++||+.+.|.||+||.||+||+++-...|+..-|+||+|++|+||+|++|.|+||-..|+|.. |.
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 356899999999999999999999999999999999999999999999999999999999887742 11
Q ss_pred ---------------------------------------------CCCHHHHHHH--HHHHHHHHHHHHHHHHHHccccc
Q psy15223 514 ---------------------------------------------NLSPIEIQNK--ARALAYEKIEQQKMDFMRLGILG 546 (2492)
Q Consensus 514 ---------------------------------------------~~~~~e~~~~--~~~~a~~~i~~~~~~~~~lGi~~ 546 (2492)
+++.+||.+. +..|...+--...++++++|.-+
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 3555666554 45778888888889999999999
Q ss_pred cccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEEEeecCCchhhhhhh
Q psy15223 547 EWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIF 624 (2492)
Q Consensus 547 Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~ 624 (2492)
||+|.|.|+| |.|.+++.|+|.+|.+.|-|..|.|-..|||.++.+..|++..-.|.+.|.-|+..++.-.+.....+
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l 279 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKAL 279 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhc
Confidence 9999999988 99999999999999999999999999999999999999999999999999999877664322111111
Q ss_pred ccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc-CC---cCcEEEEEecc
Q psy15223 625 NLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF-GF---KGNIIGICKGI 700 (2492)
Q Consensus 625 ~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~-~~---~~~~~~~~~G~ 700 (2492)
....+.++|++.+|.||+|++|.+.++|+|+.+|..++..+ +.+++|..+....++.-+- .. ....+.++.|.
T Consensus 280 --~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~-~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~ 356 (1080)
T KOG0437|consen 280 --SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN-ETEVFIATERAARNMSYQKLTKERGVVSCLVTITGY 356 (1080)
T ss_pred --cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecC-CceEEEeehHHHhhcchhhccccCCcccceeeecch
Confidence 11234568999999999999999999999999999999875 4578887766666553221 11 12344799999
Q ss_pred cccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHH-------cCCCCC-------Ccccc
Q psy15223 701 KLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-------QNMKDS-------DIINP 766 (2492)
Q Consensus 701 ~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~-------~~l~~~-------~~~~~ 766 (2492)
+|.|..+..|++. ...+.++|+..|..++|||+|.++|+..||||...+. |||.++ |++..
T Consensus 357 ~~iGa~l~aPlsv-----~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~ 431 (1080)
T KOG0437|consen 357 DLIGAPLSAPLSV-----YERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRI 431 (1080)
T ss_pred hhcCCcccCcchh-----hheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeec
Confidence 9999999999985 4567899999999999999999999999999998732 455433 11111
Q ss_pred --------------------cC----------------CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeecc
Q psy15223 767 --------------------VM----------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 810 (2492)
Q Consensus 767 --------------------vd----------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 810 (2492)
-| .+|.|. .+.|.|.+|.++.+.|-.+|.+.|.++...+.+.
T Consensus 432 ~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEk 509 (1080)
T KOG0437|consen 432 PGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEK 509 (1080)
T ss_pred cccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--EeccccccHHhhhhHHHHHHHhcccceeecCcch
Confidence 01 122222 2789999999999999999999999999887776
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceee
Q psy15223 811 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 890 (2492)
Q Consensus 811 ~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP 890 (2492)
.+. .|||+.||+.+++|||+++.. ++||+.+.+.|++++.+.+..|+.++..|+|+..|.+||..+.|++||
T Consensus 510 qVm--SRSGdeCiVAL~DQWYldYgE------~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlP 581 (1080)
T KOG0437|consen 510 QVM--SRSGDECIVALCDQWYLDYGE------AEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLP 581 (1080)
T ss_pred hhh--ccCCCceEEEeccchhhhcCc------HHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Confidence 664 499999999999999999987 569999999999998888888999999999999999999999999999
Q ss_pred EEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchhhcCC--CccCceecCCccccc---ccccc-------ccch
Q psy15223 891 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD--DAVNYKKSNDTLDVW---FDSGI-------THQT 958 (2492)
Q Consensus 891 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~~~~~--~~~~~~~~~dvlDvW---fdSg~-------~~~~ 958 (2492)
| ++..+|+++.+.......-.--.+--.++-|. .+-.+..+.-+=+|| |--+. .-..
T Consensus 582 W-----------D~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~ 650 (1080)
T KOG0437|consen 582 W-----------DEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEA 650 (1080)
T ss_pred C-----------cHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHH
Confidence 8 33344555544432221000000000011111 111233333334455 21111 1111
Q ss_pred hcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCccCcchhhhhcC
Q psy15223 959 VIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFG 1037 (2492)
Q Consensus 959 ~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yG 1037 (2492)
....+.++++|||.|+++.|+|++.+|+...|++++|+....-| +.+.++|+++ .+++|||||.||+.+.++.|++||
T Consensus 651 L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLm-LNsEKMSKSTGNfmTL~qaieKFg 729 (1080)
T KOG0437|consen 651 LSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLM-LNSEKMSKSTGNFMTLEQAIEKFG 729 (1080)
T ss_pred HHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEE-ecchhhccccCCeeeHHHHHHHhC
Confidence 22334567999999999999999999999999999999887666 8899999998 899999999999999999999999
Q ss_pred hhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc-cchHHHHHHHHHHHHHHHH
Q psy15223 1038 AEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISD-MVEIDKYAIINITNLQKEI 1115 (2492)
Q Consensus 1038 aD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~-~~~~D~~il~~l~~~~~~v 1115 (2492)
||+.|+.|+. +|-.+|.||.+...+.+ +.||.+...++...+...+ .+..+. ....||.+.+.+|.++...
T Consensus 730 ad~tRlalAdaGD~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s----~LrtGp~~~FaDrvf~nemN~~i~~t 802 (1080)
T KOG0437|consen 730 ADGTRLALADAGDGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRS----SLRTGPASTFADRVFENEMNALIAKT 802 (1080)
T ss_pred ccceeeeeecccCCcccchhHHhcccHH---HHHHHHHHHHHHHHHhhHH----hhccCchhhHHHHHHHHHHHHHHHHH
Confidence 9999999995 67789999998765544 5566666666544332211 111111 2378999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhh--ccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q psy15223 1116 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL--YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSI 1193 (2492)
Q Consensus 1116 ~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl--~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~ 1193 (2492)
.++|+...|..|+..- |. =+...||.. .|. +......++..+++.+.||+||+||+||.||+.
T Consensus 803 ~~aye~~~fk~aLK~G--fy-------d~qaArD~Yrel~g------~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~ 867 (1080)
T KOG0437|consen 803 ERAYEDTLFKDALKYG--FY-------DLQAARDMYRELCG------EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRT 867 (1080)
T ss_pred HHHHHHhHHHHHHHhh--hH-------HHHHHHHHHHHHhc------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999842 21 123334432 222 123446788889999999999999999999999
Q ss_pred ccCCCccccCCCceeeccCCCCcccCCchHH--HHHHHHHHHHHHHHHHHHHHH-HhhCCCC-CCcceEEEEEeCchhHH
Q psy15223 1194 FSDKNFYIESGETIFTQLHYKLPKVYNSKKL--LYKYMILKKIRSKVMQKLEKI-RSTGIIG-SSLQAEIILKINKLDFE 1269 (2492)
Q Consensus 1194 l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~--~~~~~~~~~lr~~v~~~le~~-R~~k~i~-~s~~a~v~i~~~~~~~~ 1269 (2492)
+..+ ..||.. .||..++...-... ....+.+..+|....+++-.. ++.|..- .+.+.+.+|.+..+..+
T Consensus 868 ~~~~------~~~v~~-~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~~~~~kkkk~K~~~~~~~p~~~ti~Vae~fp~ 940 (1080)
T KOG0437|consen 868 VLKK------NFSVNV-GWPFVSPPDEKLGSSALYLKRTLKRLRAELEKQMLKKKKKKKGAEVPSKPLKLTIYVAEEFPE 940 (1080)
T ss_pred hccC------Cceeec-CCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhhchhhcccCCCCCCCCcceEEEEEeccCCH
Confidence 8764 345554 99987654322111 233455555555555444333 2222221 24455667776654433
Q ss_pred HHHHhHHHHHHhhhccceE
Q psy15223 1270 ILNEFGEELKFFLLTSSVS 1288 (2492)
Q Consensus 1270 ~l~~~~~~L~~l~~vs~v~ 1288 (2492)
--...-+.|..++.-+.+.
T Consensus 941 Wq~~cl~il~k~~~e~~~~ 959 (1080)
T KOG0437|consen 941 WQAQCLSILQKIFCEQTGK 959 (1080)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 2233334455555544443
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=761.03 Aligned_cols=370 Identities=30% Similarity=0.540 Sum_probs=334.2
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNK 523 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e~~~~ 523 (2492)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||.+|+++++. ++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998654 5799999999
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
|+++++++++.++++|++||+++||+++|.|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865210
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 764 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~ 843 (2492)
|||||+|++++.++|||+++++
T Consensus 156 ---------------------------------------------------c~~cg~~~~~~~~~qwf~~l~~------- 177 (382)
T cd00817 156 ---------------------------------------------------CSRSGDVIEPLLKPQWFVKVKD------- 177 (382)
T ss_pred ---------------------------------------------------cccCCCeEEEEecCeeEEehHH-------
Confidence 8999999999999999999998
Q ss_pred HHHHHHHHHhhc--ceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCc
Q psy15223 844 SLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 921 (2492)
Q Consensus 844 ~~~~~~~~~i~~--v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 921 (2492)
+++++++.+++ ++|+|+..++++.+||++++||||||||.||+|||+|+|.+||+... .....+.+....
T Consensus 178 -~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~-~~~~~~~~~~~~------ 249 (382)
T cd00817 178 -LAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVV-AREEDEAIDKAA------ 249 (382)
T ss_pred -HHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEe-cchhHHHHHHhc------
Confidence 99999999988 99999999999999999999999999999999999999999998652 222222221111
Q ss_pred cccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhcC
Q psy15223 922 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 998 (2492)
Q Consensus 922 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~ 998 (2492)
+....++++..+++++|||||||||+++|++.++... +++.+||+|+|++|+||+|+|+.++++.+.++.+
T Consensus 250 ------~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 250 ------PEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred ------cccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 1111234566899999999999999999999887532 2367899999999999999999999999999999
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
..||+++++||+++|.+|+|||||+||+|+|+|++++||+|++|||+++ .++.+|.+|
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999997 457888876
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-76 Score=748.03 Aligned_cols=370 Identities=30% Similarity=0.541 Sum_probs=333.0
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhcc------CCCHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIEIQNK 1673 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~------~~~~~e~~~~ 1673 (2492)
++|+|++|||||||.|||||+++++++||++||+||+|++|+|++|||+||+|||.+|+++++. ++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998654 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceee
Q psy15223 1674 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 1753 (2492)
Q Consensus 1674 ~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~ 1753 (2492)
|++++.++++.++++|++||+++||+++|.|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999866210
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCc
Q psy15223 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913 (2492)
Q Consensus 1834 ~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~ 1913 (2492)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 1914 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 1993 (2492)
Q Consensus 1914 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~ 1993 (2492)
|||||+|++++.++|||+++++
T Consensus 156 ---------------------------------------------------c~~cg~~~~~~~~~qwf~~l~~------- 177 (382)
T cd00817 156 ---------------------------------------------------CSRSGDVIEPLLKPQWFVKVKD------- 177 (382)
T ss_pred ---------------------------------------------------cccCCCeEEEEecCeeEEehHH-------
Confidence 8999999999999999999999
Q ss_pred HHHHHHHHhhhc--ceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1994 SLRESAITAINK--IKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1994 ~~k~~~~~~~~~--v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
+++++++.+++ ++|+|++.++++.+||++++||||||||+||+|||+|+|.+|+.+.+.... ...+....
T Consensus 178 -~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~-~~~~~~~~------ 249 (382)
T cd00817 178 -LAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREE-DEAIDKAA------ 249 (382)
T ss_pred -HHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchh-HHHHHHhc------
Confidence 99999999987 999999999999999999999999999999999999999998876432221 11111110
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcC
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 2148 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~ 2148 (2492)
+....++++..+++++|||||||||+++|++.++... +++.+||+|+|++|+||+|+|+.++++.+.++.+
T Consensus 250 ------~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 250 ------PEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred ------cccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 0111233456799999999999999999999886432 2356899999999999999999999999999989
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
..||+++++||+|+|.+|+|||||+||+|+|.|++++||+|++|||+++ +++.+|.+|
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 8999999999999999999999999999999999999999999999997 568888876
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-75 Score=776.66 Aligned_cols=498 Identities=20% Similarity=0.311 Sum_probs=392.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhh-HHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~-ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
++|+|+.|||||||.|||||++++ +++|+++||+||+|++|.|++|||+||+||+.+|++. +.++.+ +|
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~---g~~~~~-------~~ 72 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTPQE-------LA 72 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc---CCCHHH-------HH
Confidence 479999999999999999999997 9999999999999999999999999999999999986 778766 89
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
.++.+.+++++++||| +||.+++|+||+|.+.++++|.+|+++|+||++..+|+|||.|+|+|++++|..
T Consensus 73 ~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g-------- 142 (556)
T PRK12268 73 DKYHEEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG-------- 142 (556)
T ss_pred HHHHHHHHHHHHHcCC--cCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec--------
Confidence 9999999999999999 566789999999999999999999999999999999999999999999865530
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
+.|. + ..
T Consensus 143 --------------------------------~cp~----c------~~------------------------------- 149 (556)
T PRK12268 143 --------------------------------TCPY----C------GY------------------------------- 149 (556)
T ss_pred --------------------------------cCCC----C------CC-------------------------------
Confidence 1110 0 00
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
.+
T Consensus 150 ------------------------------------------------------------------------------~~ 151 (556)
T PRK12268 150 ------------------------------------------------------------------------------EG 151 (556)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.+|...+.++. .+.. .+..-|+|+|||+|+++++++|||+++++ ++++
T Consensus 152 ~~G~~ce~cg~----------------------~~~~--~~l~~p~~~~~~~~~e~~~~~qwF~~l~~--------~~~~ 199 (556)
T PRK12268 152 ARGDQCDNCGA----------------------LLDP--TDLINPRSKISGSTPEFRETEHFFLDLPA--------FAER 199 (556)
T ss_pred cCCchhhhccc----------------------cCCh--HHhcCCccccCCCcCeEEecceEEEEhHH--------HHHH
Confidence 01111111100 0000 00112899999999999999999999988 9999
Q ss_pred HHHHhhcceEecchhhHHHHHHHh-cCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 849 AITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 849 ~~~~i~~v~~~P~~~~~rl~~~l~-~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
++++++++.|+|+..++++.+||+ +++||||||||+||+||| |++.+
T Consensus 200 l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~------------------------------- 247 (556)
T PRK12268 200 LRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFE------------------------------- 247 (556)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCC-------------------------------
Confidence 999999899999999999999999 999999999999999999 54322
Q ss_pred chhhcCCCccCceecCCccccccccccccchhccc-------CccccCCc----CeeeeecccccchhhHHHHHHHHHHh
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIIL 996 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~----p~Dl~~~G~D~~rgwf~s~l~~~~~~ 996 (2492)
..++|||||+.+.+.+.+.. ...+..+| |.++++.|+|+++ ||.+++++.++
T Consensus 248 ---------------~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~--Fh~~~~p~~l~ 310 (556)
T PRK12268 248 ---------------GKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIP--FHSIIWPAMLL 310 (556)
T ss_pred ---------------CcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCc--chHHHHHHHHH
Confidence 23455555544443322111 00112233 6689999999998 88888888765
Q ss_pred cCC---CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHH--HHHHHH
Q psy15223 997 NKS---APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRV--VETYRR 1070 (2492)
Q Consensus 997 ~~~---~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~--~~~~~k 1070 (2492)
... .+.+++++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+... .+..++
T Consensus 311 ~~~~~~~~P~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~ 389 (556)
T PRK12268 311 GSGEPLKLPDEIVSSEYLTL-EGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADK 389 (556)
T ss_pred hcCCCCCCCCEeeccCCEEE-CCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhh
Confidence 433 22369999999984 8999999999999999999999999999999974 6779999999987653 245667
Q ss_pred HHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhh
Q psy15223 1071 IRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 1149 (2492)
Q Consensus 1071 l~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kd 1149 (2492)
++|.+.++...+.+ ++. ..+...+...|+|++++++++++.+.++|++|+|+.|++.+++|+ +++++|++..|+
T Consensus 390 l~n~~~r~~~~~~~~~~~---~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kp 464 (556)
T PRK12268 390 YGNLVNRVLSFIEKYFGG---IVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAP 464 (556)
T ss_pred HHHHHHHHHHHHHHhcCC---cCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCC
Confidence 78875544332211 110 011234577899999999999999999999999999999999999 589999999999
Q ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCC
Q psy15223 1150 RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYK 1214 (2492)
Q Consensus 1150 rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~ 1214 (2492)
+.... .+....+.++.++.++++.++++|+|||||+|||||+.|+. +++....||.
T Consensus 465 w~~~~-~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~--------~~~~~~~w~~ 520 (556)
T PRK12268 465 WKLAK-TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG--------ENIEKLTWES 520 (556)
T ss_pred hhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC--------CCCcccchhh
Confidence 76553 23344456667777899999999999999999999999964 1344556765
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-74 Score=771.45 Aligned_cols=500 Identities=20% Similarity=0.314 Sum_probs=393.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhhh-HHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~-~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
++|+|+.|||||||.|||||++++ +++|+++||+||+|++|.|++|||+||+||+.+|++. ++++.+ ++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~---g~~~~~-------~~ 72 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE---GVTPQE-------LA 72 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc---CCCHHH-------HH
Confidence 579999999999999999999997 9999999999999999999999999999999999986 778766 89
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++.+.+++++++||++ |+.+++|+||+|.+.++++|.+|+++|+||++..+|+|||.|+|+|++.+|.-
T Consensus 73 ~~~~~~~~~~~~~l~i~--~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g-------- 142 (556)
T PRK12268 73 DKYHEEHKEDFKKLGIS--YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG-------- 142 (556)
T ss_pred HHHHHHHHHHHHHcCCc--CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec--------
Confidence 99999999999999995 56789999999999999999999999999999999999999999999865430
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
+.|.
T Consensus 143 --------------------------------~cp~-------------------------------------------- 146 (556)
T PRK12268 143 --------------------------------TCPY-------------------------------------------- 146 (556)
T ss_pred --------------------------------cCCC--------------------------------------------
Confidence 0010
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
++. .+
T Consensus 147 --------------------------------------------------------c~~-------------------~~ 151 (556)
T PRK12268 147 --------------------------------------------------------CGY-------------------EG 151 (556)
T ss_pred --------------------------------------------------------CCC-------------------cc
Confidence 000 00
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
.+|.+++.+|.. + +..+..-|+|+|||++++++.++|||+++++ ++++
T Consensus 152 ~~G~~ce~cg~~----------------------~--~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~--------~~~~ 199 (556)
T PRK12268 152 ARGDQCDNCGAL----------------------L--DPTDLINPRSKISGSTPEFRETEHFFLDLPA--------FAER 199 (556)
T ss_pred cCCchhhhcccc----------------------C--ChHHhcCCccccCCCcCeEEecceEEEEhHH--------HHHH
Confidence 111111111110 0 0001112899999999999999999999988 9999
Q ss_pred HHHhhhcceEecccchhHHHHhhh-CCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~-~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
++++++++.++|+..++++.+||+ +++||||||||+||+||| |++.+
T Consensus 200 l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~------------------------------- 247 (556)
T PRK12268 200 LRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFE------------------------------- 247 (556)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCC-------------------------------
Confidence 999999899999999999999999 999999999999999999 43221
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhccC-------CccccCCc----CceeeecccchhhhhHHHHHHHHHHh
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIF----PADLYLEGSDQHRGWFHSSLLTSIIL 2146 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~----P~Dl~~~G~D~~r~wf~~~l~~~~~l 2146 (2492)
..++|||||+.+.+.+.+.. ...++.+| |.++++.|+|+++ ||..+++++++
T Consensus 248 ---------------~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~--Fh~~~~p~~l~ 310 (556)
T PRK12268 248 ---------------GKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIP--FHSIIWPAMLL 310 (556)
T ss_pred ---------------CcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCc--chHHHHHHHHH
Confidence 23455566554444332210 01111233 5689999999998 88888888775
Q ss_pred cCC---ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH--HHHHHH
Q psy15223 2147 NKS---APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV--VETYRR 2220 (2492)
Q Consensus 2147 ~~~---~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~--~~~~~k 2220 (2492)
... .+++++++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++ ++..+|++|+++.+... .+.+++
T Consensus 311 ~~~~~~~~P~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~ 389 (556)
T PRK12268 311 GSGEPLKLPDEIVSSEYLT-LEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADK 389 (556)
T ss_pred hcCCCCCCCCEeeccCCEE-ECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhh
Confidence 433 2236999999998 4899999999999999999999999999999996 46789999999987653 345567
Q ss_pred HHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q psy15223 2221 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDR 2300 (2492)
Q Consensus 2221 l~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~ 2300 (2492)
++|.+.++...+...... ..+...+...|+|++++++++++.+.++|++|+|+.|++.+++|+ +++|+|++..|++
T Consensus 390 l~n~~~r~~~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw 465 (556)
T PRK12268 390 YGNLVNRVLSFIEKYFGG--IVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPW 465 (556)
T ss_pred HHHHHHHHHHHHHHhcCC--cCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCCh
Confidence 888755443221110000 011233567899999999999999999999999999999999999 5999999999987
Q ss_pred hccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCC
Q psy15223 2301 LYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 2365 (2492)
Q Consensus 2301 l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~ 2365 (2492)
.... .+......++.++.++++.++++|+|||||+|||||+.|+.. ++..+.||..
T Consensus 466 ~~~~-~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~--------~~~~~~w~~~ 521 (556)
T PRK12268 466 KLAK-TDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGE--------NIEKLTWESL 521 (556)
T ss_pred hhhc-CCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCC--------CCcccchhhh
Confidence 6543 233444566677778999999999999999999999999642 4555677753
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-73 Score=754.75 Aligned_cols=484 Identities=25% Similarity=0.339 Sum_probs=403.8
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
|+|++|||||||.+||||+++++.+|+++||+||+|++|.|++|||+||+||+.+|+++ +++|.+ +++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~e-------~~~~~ 70 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPKE-------LVDKY 70 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc---CCCHHH-------HHHHH
Confidence 68999999999999999999999999999999999999999999999999999999886 778876 78889
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEEE
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv~ 611 (2492)
.+.+++++++|||.. |..++|+++.|...++++|.+|+++|+||++..+|+||+.|+|+|+|++|+..
T Consensus 71 ~~~~~~~l~~LgI~~--D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~---------- 138 (530)
T TIGR00398 71 HEEFKDDWKWLNISF--DRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGT---------- 138 (530)
T ss_pred HHHHHHHHHHhCCCC--CCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCC----------
Confidence 999999999999965 56788999999999999999999999999999999999999999999876410
Q ss_pred eecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcC
Q psy15223 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 691 (2492)
Q Consensus 612 f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 691 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (530)
T TIGR00398 139 -------------------------------------------------------------------------------- 138 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCC
Q psy15223 692 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 771 (2492)
Q Consensus 692 ~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G 771 (2492)
+|.+|.+| .+|
T Consensus 139 --------------------------------------------------cp~c~~~~-------------------~~g 149 (530)
T TIGR00398 139 --------------------------------------------------CPKCGSED-------------------ARG 149 (530)
T ss_pred --------------------------------------------------CCCCCCcc-------------------ccc
Confidence 00000000 001
Q ss_pred cccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 772 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 851 (2492)
Q Consensus 772 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~ 851 (2492)
...+.++ . ..+..++..|+|||||+|++++.++|||+++++ +++++++
T Consensus 150 ~~ce~cg----------------------~--~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~--------~~~~l~~ 197 (530)
T TIGR00398 150 DHCEVCG----------------------R--HLEPTELINPRCKICGAKPELRDSEHYFFRLSA--------FEKELEE 197 (530)
T ss_pred chhhhcc----------------------c--cCCHHHhcCCccccCCCcceEEecceEEEEhHH--------HHHHHHH
Confidence 1111111 0 013344668999999999999999999999998 9999999
Q ss_pred Hhhc---ceEecchhhHHHHHHHhc-CCCeeeecccc-CCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccccc
Q psy15223 852 AINK---IKFFPSWGKDRLKSMILN-RPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 926 (2492)
Q Consensus 852 ~i~~---v~~~P~~~~~rl~~~l~~-~~DWcISRqr~-WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~ 926 (2492)
.+++ ..+.|+..++++.+||++ ++|||||||+. ||+|||.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------------------------------- 243 (530)
T TIGR00398 198 WIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------------------------------- 243 (530)
T ss_pred HHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------------------------
Confidence 9984 556788899999999997 99999999999 99999952
Q ss_pred CchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCee-----eeecccccchhhHHHHHHHHHHhc
Q psy15223 927 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 927 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~D-----l~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
++++++||||+.++|++.+.... .++.+||+| +++.|+|+++ ||..+++++++.
T Consensus 244 ---------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~--~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 ---------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVR--FHTIYWPAMLMG 306 (530)
T ss_pred ---------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccch--hHHHHHHHHHHh
Confidence 13589999999999887654321 235789999 9999999998 666666654442
Q ss_pred -CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHHHH
Q psy15223 998 -KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRIRN 1073 (2492)
Q Consensus 998 -~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl~n 1073 (2492)
+..|++++++|||+++. |+|||||+||+|+|.|++++||+|++|||+++ ++..+|++|+++.++... +.+.+++|
T Consensus 307 ~~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n 385 (530)
T TIGR00398 307 LGLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGN 385 (530)
T ss_pred CCCCCCCEEEeeccEEEC-CceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999976 99999999999999999999999999999997 567899999999998773 56788999
Q ss_pred HHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhc
Q psy15223 1074 TLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 1152 (2492)
Q Consensus 1074 ~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~ 1152 (2492)
++.++++.+.+ ++.. ........+.|+|++++++++.+.+.++|++|+|+.|++.+++|+ +++|+|++..|++.+
T Consensus 386 ~~~r~~~~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~ 461 (530)
T TIGR00398 386 LLNRTLGFIKKYFNGV--LPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWEL 461 (530)
T ss_pred HHHHHHHHHHHhcCCc--CCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhh
Confidence 88766554332 1110 111122457899999999999999999999999999999999999 589999999999877
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1153 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1153 ~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.. ++.++++++++++++++.++++|+|||||+|||||+.|+.
T Consensus 462 ~~--~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 462 FK--QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred cC--ChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 64 3346789999999999999999999999999999999974
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-72 Score=744.38 Aligned_cols=484 Identities=24% Similarity=0.329 Sum_probs=402.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
|+|+.|||||||.|||||+++++.+|+++||+||+|++|+|++|||+||+||+.+|+++ ++++.+ ++.++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~e-------~~~~~ 70 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---GLTPKE-------LVDKY 70 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc---CCCHHH-------HHHHH
Confidence 68999999999999999999999999999999999999999999999999999999886 788776 78889
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEE
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 1761 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~ 1761 (2492)
.+.+++++++||+++| ..++|+++.|...++++|.+|+++|+||++..+|+|||.|+|+|+|.+|+..
T Consensus 71 ~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~---------- 138 (530)
T TIGR00398 71 HEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGT---------- 138 (530)
T ss_pred HHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCC----------
Confidence 9999999999999754 5778999999999999999999999999999999999999999999765410
Q ss_pred EeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcC
Q psy15223 1762 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 1841 (2492)
Q Consensus 1762 f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 1841 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (530)
T TIGR00398 139 -------------------------------------------------------------------------------- 138 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCC
Q psy15223 1842 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 1921 (2492)
Q Consensus 1842 ~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G 1921 (2492)
+|.++.+ |..|
T Consensus 139 --------------------------------------------------cp~c~~~-------------------~~~g 149 (530)
T TIGR00398 139 --------------------------------------------------CPKCGSE-------------------DARG 149 (530)
T ss_pred --------------------------------------------------CCCCCCc-------------------cccc
Confidence 0111100 0112
Q ss_pred ccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 2001 (2492)
Q Consensus 1922 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~ 2001 (2492)
..++.|+. ..+..++..|+|+|||+|++++.++|||+++++ +++.+++
T Consensus 150 ~~ce~cg~------------------------~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~--------~~~~l~~ 197 (530)
T TIGR00398 150 DHCEVCGR------------------------HLEPTELINPRCKICGAKPELRDSEHYFFRLSA--------FEKELEE 197 (530)
T ss_pred chhhhccc------------------------cCCHHHhcCCccccCCCcceEEecceEEEEhHH--------HHHHHHH
Confidence 22222221 113445668999999999999999999999999 9999999
Q ss_pred hhhc---ceEecccchhHHHHhhhC-CCCcccccccC-CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccccc
Q psy15223 2002 AINK---IKFFPSWGKDRLKSMILN-RPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 2076 (2492)
Q Consensus 2002 ~~~~---v~~~P~~~~~~~~~~l~~-~~DW~ISRqr~-WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~ 2076 (2492)
++++ ..+.|+..++.+.+||++ ++|||||||++ ||+|||.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------------------------------- 243 (530)
T TIGR00398 198 WIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------------------------------- 243 (530)
T ss_pred HHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------------------------
Confidence 9974 556688888999999997 99999999999 99999952
Q ss_pred chhhhcCCCccCceecccccccccccCcchhhhccCCc----cccCCcCce-----eeecccchhhhhHHHHHHHHHHhc
Q psy15223 2077 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSIILN 2147 (2492)
Q Consensus 2077 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~P~D-----l~~~G~D~~r~wf~~~l~~~~~l~ 2147 (2492)
+++++|||||+.+.|++.+.... .++.+||.| +++.|+|+++ ||..+++++++.
T Consensus 244 ---------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~--~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 ---------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVR--FHTIYWPAMLMG 306 (530)
T ss_pred ---------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccch--hHHHHHHHHHHh
Confidence 12589999999999888653321 124578999 9999999998 556666655443
Q ss_pred -CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH--HHHHHHHHH
Q psy15223 2148 -KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV--VETYRRIRN 2223 (2492)
Q Consensus 2148 -~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~--~~~~~kl~n 2223 (2492)
+..|++++++|||+++. |+|||||+||+|+|.|++++||+|++|||+++ ++..+|++|+++.++.. .+.+++++|
T Consensus 307 ~~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n 385 (530)
T TIGR00398 307 LGLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGN 385 (530)
T ss_pred CCCCCCCEEEeeccEEEC-CceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999976 99999999999999999999999999999997 56899999999999876 356788999
Q ss_pred HHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhc
Q psy15223 2224 TLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 2302 (2492)
Q Consensus 2224 ~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~ 2302 (2492)
++.+++..+.+ ++.. ..........|+|++++++++.+.+.++|++|+|+.|++.+++|+ +++|+|++.+|++.+
T Consensus 386 ~~~r~~~~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~ 461 (530)
T TIGR00398 386 LLNRTLGFIKKYFNGV--LPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWEL 461 (530)
T ss_pred HHHHHHHHHHHhcCCc--CCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhh
Confidence 88765543322 1110 111122457899999999999999999999999999999999999 589999999999776
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2303 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2303 ~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.. +...+++++++++++++.++++|+|||||+|||||+.|+.
T Consensus 462 ~~--~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 462 FK--QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred cC--ChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 53 2336778999999999999999999999999999999974
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=752.31 Aligned_cols=461 Identities=22% Similarity=0.344 Sum_probs=398.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+|++|+|||||.+||||++++++.|+++||+||+|++|.|++|||+||+||+.+|++. +.+|.+ ++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~---g~~~~e-------~~ 72 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA---GKTPQE-------YV 72 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc---CCCHHH-------HH
Confidence 35899999999999999999999999999999999999999999999999999999999876 788877 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++.+.++++|++|||++ |+.++|+|+.+...++++|.+|+++|+||++..+++||+.|+++|+|.++.
T Consensus 73 d~~~~~fk~~l~~lgI~~--D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~--------- 141 (648)
T PRK12267 73 DEISAGFKELWKKLDISY--DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV--------- 141 (648)
T ss_pred HHHHHHHHHHHHHcCCCC--CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc---------
Confidence 889999999999999954 678999999999999999999999999999999999999999998774431
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+
T Consensus 142 ------------------------------~------------------------------------------------- 142 (648)
T PRK12267 142 ------------------------------D------------------------------------------------- 142 (648)
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
-|+|||||+|++++.++|||+++++ ++++
T Consensus 143 -------------------------------------------~~~c~~cg~~~e~~~~~~~f~~l~~--------~~~~ 171 (648)
T PRK12267 143 -------------------------------------------GGKCPDCGREVELVKEESYFFRMSK--------YQDR 171 (648)
T ss_pred -------------------------------------------CCcCCCCCCcCeEEecceEEEEcHH--------HHHH
Confidence 0369999999999999999999998 9999
Q ss_pred HHHHhhcc-e-EecchhhHHHH-HHHhc-CCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccc
Q psy15223 849 AITAINKI-K-FFPSWGKDRLK-SMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923 (2492)
Q Consensus 849 ~~~~i~~v-~-~~P~~~~~rl~-~~l~~-~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 923 (2492)
+++.+++. . +.|+..++++. +||++ ++|||||||| .||+|||..
T Consensus 172 l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------------------------------- 220 (648)
T PRK12267 172 LLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------------------------------- 220 (648)
T ss_pred HHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------------------------------
Confidence 99999764 3 46999999999 99996 9999999998 699999941
Q ss_pred cccCchhhcCCCccCceecCCccccccccccccchhcccCc----cccCCcCeeeeecccccchhhHHHHHHHHHHh-cC
Q psy15223 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL-NK 998 (2492)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~ 998 (2492)
+++|+||||||+++|++.+++.. +++.+||+|+|++|+||+| ||..+|+++++ .+
T Consensus 221 ------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~--fH~i~wpa~l~~~~ 280 (648)
T PRK12267 221 ------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHAIYWPIMLMALG 280 (648)
T ss_pred ------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc--hhHHHHHHHHHhCC
Confidence 23699999999999999887632 1256789999999999999 88999987764 46
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHHHHHH
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRIRNTL 1075 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl~n~~ 1075 (2492)
..|+++|++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++ +++.+|.+|+++.+.+.. +..+++.|++
T Consensus 281 ~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~ 359 (648)
T PRK12267 281 LPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLL 359 (648)
T ss_pred CCCCcEEEecceEEE-CCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 678899999999995 699999999999999999999999999999996 678999999999986643 3456788887
Q ss_pred HHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccc
Q psy15223 1076 RFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTT 1154 (2492)
Q Consensus 1076 rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~ 1154 (2492)
.+++..+.. |+.. .+....+...|+|++++++++.+++.++|++|+|++|++.+++|+ .++|+|++..|+|....
T Consensus 360 ~R~~~~~~~~~~~~--~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~ 435 (648)
T PRK12267 360 NRTVAMINKYFDGE--IPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAK 435 (648)
T ss_pred HHHHHHHHHhcCCc--CCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhc
Confidence 766554432 2211 111234567899999999999999999999999999999999998 47999999999964432
Q ss_pred c-CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1155 K-KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1155 ~-~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
. .+..+.++++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 436 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 436 DEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 2 23344567788899999999999999999999999999985
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=742.72 Aligned_cols=462 Identities=22% Similarity=0.338 Sum_probs=396.0
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+|+.|+|||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. +++|.+ ++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~---g~~~~e-------~~ 72 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA---GKTPQE-------YV 72 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc---CCCHHH-------HH
Confidence 35899999999999999999999999999999999999999999999999999999999876 788876 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++.+.++++|++|||++ |.+++|+|+.+.+.++++|.+|+++|+||++..+++|||.|+++|+|.++.
T Consensus 73 d~~~~~fk~~l~~lgI~~--D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~--------- 141 (648)
T PRK12267 73 DEISAGFKELWKKLDISY--DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV--------- 141 (648)
T ss_pred HHHHHHHHHHHHHcCCCC--CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc---------
Confidence 889999999999999965 578999999999999999999999999999999999999999998774421
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+
T Consensus 142 ------------------------------~------------------------------------------------- 142 (648)
T PRK12267 142 ------------------------------D------------------------------------------------- 142 (648)
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
-|+|+|||+|++++.++|||+++++ ++++
T Consensus 143 -------------------------------------------~~~c~~cg~~~e~~~~~~~f~~l~~--------~~~~ 171 (648)
T PRK12267 143 -------------------------------------------GGKCPDCGREVELVKEESYFFRMSK--------YQDR 171 (648)
T ss_pred -------------------------------------------CCcCCCCCCcCeEEecceEEEEcHH--------HHHH
Confidence 0469999999999999999999999 9999
Q ss_pred HHHhhhcc-e-EecccchhHHH-HhhhC-CCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc
Q psy15223 1999 AITAINKI-K-FFPSWGKDRLK-SMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073 (2492)
Q Consensus 1999 ~~~~~~~v-~-~~P~~~~~~~~-~~l~~-~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w 2073 (2492)
+++++++. . +.|+..++++. +||++ ++|||||||| .||+|||..
T Consensus 172 l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------------------------------- 220 (648)
T PRK12267 172 LLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------------------------------- 220 (648)
T ss_pred HHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------------------------------
Confidence 99999753 3 56898899998 99996 9999999998 599999941
Q ss_pred cccchhhhcCCCccCceecccccccccccCcchhhhccCCc----cccCCcCceeeecccchhhhhHHHHHHHHHHh-cC
Q psy15223 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL-NK 2148 (2492)
Q Consensus 2074 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~ 2148 (2492)
+++|+||||||+++|++.++... +++.+||+|+|++|+||++ ||..+|+++++ .+
T Consensus 221 ------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~--fH~i~wpa~l~~~~ 280 (648)
T PRK12267 221 ------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILR--FHAIYWPIMLMALG 280 (648)
T ss_pred ------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecc--hhHHHHHHHHHhCC
Confidence 13699999999999999886532 1245689999999999999 88888887774 46
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHHHHHHH
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRRIRNTL 2225 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~kl~n~~ 2225 (2492)
..|+++|++|||+++ +|+|||||+||+|+|.+++++||+|++||||++ +++.+|.+|+++.+.+..+ ..++++|++
T Consensus 281 ~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~ 359 (648)
T PRK12267 281 LPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLL 359 (648)
T ss_pred CCCCcEEEecceEEE-CCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 678899999999995 699999999999999999999999999999995 6889999999999866433 457788887
Q ss_pred HHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcccc
Q psy15223 2226 RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK 2305 (2492)
Q Consensus 2226 r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~ 2305 (2492)
.+++..+..+..+ ..+....+...|+|++++++++.+++.++|++|+|++|++.+++|+ .++|+|++..|++.....
T Consensus 360 ~R~~~~~~~~~~~-~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~ 436 (648)
T PRK12267 360 NRTVAMINKYFDG-EIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKD 436 (648)
T ss_pred HHHHHHHHHhcCC-cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcC
Confidence 6655443321111 1111234567899999999999999999999999999999999998 479999999998543322
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2306 -KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2306 -~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.+..+..+++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 437 ~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 437 EGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 23344566788899999999999999999999999999985
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-70 Score=734.51 Aligned_cols=498 Identities=17% Similarity=0.224 Sum_probs=401.7
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNK 523 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~ 523 (2492)
+..+.++|+|+.|||||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+|||.+|++. +.+|.+
T Consensus 12 ~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~---g~~p~e---- 84 (801)
T PLN02610 12 PIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE---NCTPKE---- 84 (801)
T ss_pred CCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc---CCCHHH----
Confidence 3456778999999999999999999997 67799999999999999999999999999999999886 788877
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
+++++.+.++++|++||| +||++++|+||.|.+.++++|.+|+++|+||++..+++|||+|+|+|+|..|+-.
T Consensus 85 ---~~d~~~~~~~~~~~~l~i--~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~-- 157 (801)
T PLN02610 85 ---ICDKYHAIHKEVYDWFDI--SFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGT-- 157 (801)
T ss_pred ---HHHHHHHHHHHHHHHcCC--ccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCc--
Confidence 888899999999999998 5679999999999999999999999999999999999999999999999876400
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
. |...
T Consensus 158 -C--------------------------------------------------P~~~------------------------ 162 (801)
T PLN02610 158 -C--------------------------------------------------PTEG------------------------ 162 (801)
T ss_pred -C--------------------------------------------------Cccc------------------------
Confidence 0 0000
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
.+ ..++.|. .|...|.
T Consensus 163 ---C~----------------------------------------------------~~~a~Gd----~Ce~Cg~----- 178 (801)
T PLN02610 163 ---CN----------------------------------------------------YDSARGD----QCEKCGK----- 178 (801)
T ss_pred ---cC----------------------------------------------------ccccccc----hhhhccc-----
Confidence 00 0000000 0111111
Q ss_pred ccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 764 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~ 843 (2492)
. ....++..|+|++||+|++++.++|||+++++
T Consensus 179 --------------------------------------~--~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~------- 211 (801)
T PLN02610 179 --------------------------------------L--LNPTELIDPKCKVCKNTPRIRDTDHLFLELPL------- 211 (801)
T ss_pred --------------------------------------c--CChhhhcCCcccCCCCcceEEEcceEEEEhHH-------
Confidence 0 01123445899999999999999999999998
Q ss_pred HHHHHHHHHhhcceEecchhhHH---HHHHHh-cCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 844 SLRESAITAINKIKFFPSWGKDR---LKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 844 ~~~~~~~~~i~~v~~~P~~~~~r---l~~~l~-~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
+++.+++.+++-...|.|..+. +.+||+ +++||||||+..||+|+|.- |
T Consensus 212 -~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~-----~--------------------- 264 (801)
T PLN02610 212 -LKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE-----K--------------------- 264 (801)
T ss_pred -HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC-----C---------------------
Confidence 9999999998654567766654 448997 69999999999999999940 0
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhc-ccCccccCCcCe--e---eeecccccchhhHHHHHHHH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI-RGSHKKQLIFPA--D---LYLEGSDQHRGWFHSSLLTS 993 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~-~~~~~~~~~~p~--D---l~~~G~D~~rgwf~s~l~~~ 993 (2492)
-+..|++||||+-+.|++.+ +...+++.|||. | +|+.|+|+++ ||+.+|++
T Consensus 265 ---------------------~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~--fH~i~wPa 321 (801)
T PLN02610 265 ---------------------YKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVP--FHTVMFPS 321 (801)
T ss_pred ---------------------CCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecch--hHHHHHHH
Confidence 13468999999999998876 333334567765 7 8999999998 99999999
Q ss_pred HHhcCCCC---ceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhc-cCcccccccCHHHHHHHHH--
Q psy15223 994 IILNKSAP---YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS-TDYSKDLSISNEILNRVVE-- 1066 (2492)
Q Consensus 994 ~~~~~~~p---~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~-- 1066 (2492)
+++....| ++++++|||+. .+|+|||||+||+|+|.++++. ||+|++||||++ .++.+|.+||++.+.+..+
T Consensus 322 ~L~a~g~~~~~p~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~Nsd 400 (801)
T PLN02610 322 TLLGTGENWTMMKTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSE 400 (801)
T ss_pred HHHhCCCCcCCCCEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHH
Confidence 99976654 47999999987 8999999999999999999996 999999999996 6788999999999877654
Q ss_pred HHHHHHHHHHHHhhcCCC-----CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhh
Q psy15223 1067 TYRRIRNTLRFLLANTSD-----FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGS 1141 (2492)
Q Consensus 1067 ~~~kl~n~~rf~l~~l~~-----~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~ 1141 (2492)
..+.+.|.+..+++.+.. |+.........+...+|+|++++++++++++.++|++|+|+.|++.+++|+ +++|
T Consensus 401 L~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~N 478 (801)
T PLN02610 401 LLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGN 478 (801)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHH
Confidence 477788866655544331 222110001112456799999999999999999999999999999999986 6899
Q ss_pred hHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1142 FYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1142 ~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
+||+..++|-... .+..+..++..++.++++.++.+|+||||++||+||+.|+-
T Consensus 479 kYIe~~kPW~L~k-~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 479 AYLQESQFWKLYK-EDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HHHHhcCchhhhC-CCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 9999998864322 23344566788888899999999999999999999999984
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-70 Score=731.26 Aligned_cols=496 Identities=16% Similarity=0.221 Sum_probs=398.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 1675 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~ 1675 (2492)
.++++|+|+.|||||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+|||.+|++. +.+|.+
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~---g~~p~e------ 84 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE---NCTPKE------ 84 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc---CCCHHH------
Confidence 46678999999999999999999997 67799999999999999999999999999999999887 788877
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeec
Q psy15223 1676 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755 (2492)
Q Consensus 1676 ~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~ 1755 (2492)
++.++.+.++++|++|||+ ||++++|++|.|.+.++++|.+|+++|+||++..+++|||+|+|+|+|..|+-.
T Consensus 85 -~~d~~~~~~~~~~~~l~i~--~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~---- 157 (801)
T PLN02610 85 -ICDKYHAIHKEVYDWFDIS--FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGT---- 157 (801)
T ss_pred -HHHHHHHHHHHHHHHcCCc--cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCc----
Confidence 7888889999999999985 569999999999999999999999999999999999999999999999776400
Q ss_pred ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHH
Q psy15223 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 1835 (2492)
Q Consensus 1756 ~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 1835 (2492)
+ |...
T Consensus 158 ------------------C-------------------------------P~~~-------------------------- 162 (801)
T PLN02610 158 ------------------C-------------------------------PTEG-------------------------- 162 (801)
T ss_pred ------------------C-------------------------------Cccc--------------------------
Confidence 0 0000
Q ss_pred HcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccc
Q psy15223 1836 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 1915 (2492)
Q Consensus 1836 ~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~ 1915 (2492)
.|.+
T Consensus 163 -----------------------------------------------------------C~~~----------------- 166 (801)
T PLN02610 163 -----------------------------------------------------------CNYD----------------- 166 (801)
T ss_pred -----------------------------------------------------------cCcc-----------------
Confidence 0000
Q ss_pred ccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1916 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1916 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
+.+|-.++.|+. .....++..|+|++||+|++++.++|||+++++ +
T Consensus 167 --~a~Gd~Ce~Cg~------------------------~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~--------~ 212 (801)
T PLN02610 167 --SARGDQCEKCGK------------------------LLNPTELIDPKCKVCKNTPRIRDTDHLFLELPL--------L 212 (801)
T ss_pred --ccccchhhhccc------------------------cCChhhhcCCcccCCCCcceEEEcceEEEEhHH--------H
Confidence 001111111110 011233445899999999999999999999999 9
Q ss_pred HHHHHHhhhcceEecccchhH---HHHhhh-CCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1996 RESAITAINKIKFFPSWGKDR---LKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1996 k~~~~~~~~~v~~~P~~~~~~---~~~~l~-~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
++.+++++++-.+.|.+..+. +.+||+ +++||||||+..||+|+|.. |
T Consensus 213 ~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~--------------------------~-- 264 (801)
T PLN02610 213 KDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE--------------------------K-- 264 (801)
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC--------------------------C--
Confidence 999999998655567666554 448997 69999999999999999941 0
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhc-cCCccccCCcCc--e---eeecccchhhhhHHHHHHHHHH
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVI-RGSHKKQLIFPA--D---LYLEGSDQHRGWFHSSLLTSII 2145 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~-~~~~~~~~~~P~--D---l~~~G~D~~r~wf~~~l~~~~~ 2145 (2492)
-+..|++||||+-+.|++.+ ....+++.|||. | +|+.|+|+++ ||.++|++++
T Consensus 265 -------------------~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~--fH~i~wPa~L 323 (801)
T PLN02610 265 -------------------YKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVP--FHTVMFPSTL 323 (801)
T ss_pred -------------------CCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecch--hHHHHHHHHH
Confidence 02469999999999999886 332223445654 6 7999999998 9999999999
Q ss_pred hcCCcc---ccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HH
Q psy15223 2146 LNKSAP---YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TY 2218 (2492)
Q Consensus 2146 l~~~~p---fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~ 2218 (2492)
+....| ++++++|||++ .+|+|||||+||+|+|.++++. ||+|++||||++ .++++|.+||++.+.+..+ ..
T Consensus 324 ~a~g~~~~~p~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~ 402 (801)
T PLN02610 324 LGTGENWTMMKTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELL 402 (801)
T ss_pred HhCCCCcCCCCEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHH
Confidence 976654 47999999987 8999999999999999999996 999999999996 6889999999999877655 46
Q ss_pred HHHHHHHHHHHhcCC-----CCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2219 RRIRNTLRFLLANTS-----DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~-----~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
+.|.|.+..++..+. .|+.........+...+|+|++++++++++++.++|++|+|++|++.+++|. +++|+|
T Consensus 403 n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~NkY 480 (801)
T PLN02610 403 NNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGNAY 480 (801)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHH
Confidence 778886655544333 1221100001112456799999999999999999999999999999999986 789999
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2294 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2294 le~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
|+..++|-... .+..+..+++.++.++++.++.||+||||++||+||+.|+-
T Consensus 481 Ie~~kPW~L~k-~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 481 LQESQFWKLYK-EDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HHhcCchhhhC-CCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 99888754322 23344556778888899999999999999999999999984
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=706.97 Aligned_cols=464 Identities=22% Similarity=0.330 Sum_probs=387.9
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
..+++|+|++|||||||.||||||++++++|+++||+||+|++|.|++|||+||+||+.+|++. +.+|.+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~---g~~p~e------- 135 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN---GRNPPE------- 135 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc---CCChHH-------
Confidence 3467899999999999999999999999999999999999999999999999999999999876 677766
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceecc
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~ 606 (2492)
+|+++.+.++++|++||| +||++++|++|.|.+.++++|.+|+++|+||++.++++|||+|++.+.+.|+.
T Consensus 136 ~~~~~~~~~~~~~~~l~I--~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~------- 206 (616)
T PLN02224 136 HCDIISQSYRTLWKDLDI--AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL------- 206 (616)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc-------
Confidence 677778889999999999 77899999999999999999999999999999999999999999876443321
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
.
T Consensus 207 ------------------------------------------------------------------------------~- 207 (616)
T PLN02224 207 ------------------------------------------------------------------------------E- 207 (616)
T ss_pred ------------------------------------------------------------------------------C-
Confidence 0
Q ss_pred cCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 767 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 846 (2492)
Q Consensus 767 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~ 846 (2492)
-+.|..||.|++++.+++||+++++ ++
T Consensus 208 ---------------------------------------------~~~~~~~~~~~~~~~e~~~ff~Ls~--------~~ 234 (616)
T PLN02224 208 ---------------------------------------------NNCCPVHQMPCVARKEDNYFFALSK--------YQ 234 (616)
T ss_pred ---------------------------------------------CCCCCCCCCcceEEecceEEEEhHH--------HH
Confidence 0135568999999999999999998 89
Q ss_pred HHHHHHhhc-ce-EecchhhHHHHHHHh-cCCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 847 ESAITAINK-IK-FFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 847 ~~~~~~i~~-v~-~~P~~~~~rl~~~l~-~~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+.+.+.+++ -. +.|+..++.+.+||+ +++||||||.+ .||+|+|.
T Consensus 235 ~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~------------------------------- 283 (616)
T PLN02224 235 KPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD------------------------------- 283 (616)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC-------------------------------
Confidence 999999964 33 458888899999999 59999999987 79999993
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCcc-------ccCCcCeeeeecccccchhhHHHHHHHHHH
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSII 995 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~ 995 (2492)
.++.|++||||+.+.|++.++.... +..+||.|+|+.|+|+++ ||+.+|++++
T Consensus 284 ------------------~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~--fH~i~wpa~l 343 (616)
T PLN02224 284 ------------------DDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILR--FHAVYWPAML 343 (616)
T ss_pred ------------------CCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccc--cHHHHHHHHH
Confidence 0246899999999999987754321 134789999999999998 8999999987
Q ss_pred hc-CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHH
Q psy15223 996 LN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRI 1071 (2492)
Q Consensus 996 ~~-~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl 1071 (2492)
+. +..+.+++++|||+ +.+|+|||||+||+|+|.+++++||+|++||||++ +++.+|.+|+++.+.+.. +....+
T Consensus 344 ~~~g~~~P~~i~~~g~l-~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~l 422 (616)
T PLN02224 344 MSAGLELPKMVFGHGFL-TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTI 422 (616)
T ss_pred HHCCCCCCcEEEecccE-ecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 75 33445999999995 59999999999999999999999999999999997 567899999999875443 356677
Q ss_pred HHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhh
Q psy15223 1072 RNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151 (2492)
Q Consensus 1072 ~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl 1151 (2492)
.|.+.+++.....+... ..+........|++++++++++++++.++|++|+|++|++.+++|+ ..+|+|++..++|-
T Consensus 423 gNll~R~l~~~~k~~~~-~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 423 GNLLNRTLGLLKKNCES-TLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHHHHHhcCC-cCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchh
Confidence 78776655433221111 0011112245689999999999999999999999999999999998 67999999988874
Q ss_pred ccccC--ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1152 YTTKK--NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1152 ~~~~~--~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
..... +..+..++..+++++++.++.+|+|||||+||+||+.|+.
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 32221 2233456778899999999999999999999999999974
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=730.39 Aligned_cols=482 Identities=20% Similarity=0.273 Sum_probs=395.0
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|+|+.|||||||.+||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++. +.+|.+ +++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~---g~~p~e-------~~~ 71 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPEE-------LIA 71 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4699999999999999999999999999999999999999999999999999999999986 788877 789
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y 609 (2492)
++.+.++++|++|||+. +.+++|+++.|.+.++++|.+|+++|+||++..+|+||+.|+++|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~l~i~~--d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g--------- 140 (673)
T PRK00133 72 RYHAEHKRDFAGFGISF--DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG--------- 140 (673)
T ss_pred HHHHHHHHHHHHhCCCC--CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec---------
Confidence 99999999999999965 5689999999999999999999999999999999999999999999976540
Q ss_pred EEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC
Q psy15223 610 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 689 (2492)
Q Consensus 610 v~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 689 (2492)
|.| .+.+ +
T Consensus 141 -------------------------------~cp----~C~~----~--------------------------------- 148 (673)
T PRK00133 141 -------------------------------TCP----KCGA----E--------------------------------- 148 (673)
T ss_pred -------------------------------ccC----CCCC----c---------------------------------
Confidence 001 0000 0
Q ss_pred cCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC
Q psy15223 690 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 769 (2492)
Q Consensus 690 ~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~ 769 (2492)
|.
T Consensus 149 ------------------------------------------------------------------------------d~ 150 (673)
T PRK00133 149 ------------------------------------------------------------------------------DQ 150 (673)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 770 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849 (2492)
Q Consensus 770 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~ 849 (2492)
+|...+.++ ..+.-.++ ..|+|++||+|++++.++|||+++++ +++++
T Consensus 151 ~g~~ce~cg----------------------~~~~~~~l--~~~~~~~~g~~~e~~~~~~~f~~l~~--------~~~~l 198 (673)
T PRK00133 151 YGDNCEVCG----------------------ATYSPTEL--INPKSAISGATPVLKESEHFFFKLPR--------FEEFL 198 (673)
T ss_pred CCchhhhcc----------------------ccCChHhh--cCCccccCCCcceEEecceEEEEHHH--------HHHHH
Confidence 011111111 00000001 12789999999999999999999998 99999
Q ss_pred HHHhhc-ceEecchhhHHHHHHHh-cCCCeeeeccccC-CceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccccc
Q psy15223 850 ITAINK-IKFFPSWGKDRLKSMIL-NRPDWTISRQRHW-GVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 926 (2492)
Q Consensus 850 ~~~i~~-v~~~P~~~~~rl~~~l~-~~~DWcISRqr~W-GvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~ 926 (2492)
++.+++ ..| |+..++.+.+||+ +++|||||||+.| |+|+|-
T Consensus 199 ~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~----------------------------------- 242 (673)
T PRK00133 199 KEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG----------------------------------- 242 (673)
T ss_pred HHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC-----------------------------------
Confidence 999865 555 8899999999997 6999999999999 999991
Q ss_pred CchhhcCCCccCceecCCccccccccccccchhcc-cCc-----cccCCcCee-----eeecccccchhhHHHHHHHHHH
Q psy15223 927 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-GSH-----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSII 995 (2492)
Q Consensus 927 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~-~~~-----~~~~~~p~D-----l~~~G~D~~rgwf~s~l~~~~~ 995 (2492)
.+..+++||||+.+.|++.+. ... .++.|||.+ +|+.|+|+++ ||..+|++++
T Consensus 243 --------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~wpa~l 306 (673)
T PRK00133 243 --------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIY--FHTLFWPAML 306 (673)
T ss_pred --------------CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchh--HHHHHHHHHH
Confidence 023589999999999887663 211 124677433 9999999998 8899998877
Q ss_pred hc-CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcc-cccccCHHHHHHH--HHHHHH
Q psy15223 996 LN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYS-KDLSISNEILNRV--VETYRR 1070 (2492)
Q Consensus 996 ~~-~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~-~d~~fs~~~l~~~--~~~~~k 1070 (2492)
+. +..++++|++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++ ++.. +|.+|+++.+... .+..++
T Consensus 307 ~a~g~~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~ 385 (673)
T PRK00133 307 EGAGYRLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGK 385 (673)
T ss_pred HhCCCCCCCEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 64 4445599999999997 999999999999999999999999999999996 4567 8999999987543 345778
Q ss_pred HHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhh
Q psy15223 1071 IRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 1149 (2492)
Q Consensus 1071 l~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kd 1149 (2492)
++|.+.++...+.. |+.. ++ ..+.|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|+
T Consensus 386 l~Nl~~R~~~~~~k~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kp 457 (673)
T PRK00133 386 VVNFASRTAGFINKRFDGK---LP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEP 457 (673)
T ss_pred HHHHHHHHHHHHHHhcCCC---CC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCC
Confidence 88887766543322 2211 11 245699999999999999999999999999999999998 589999999999
Q ss_pred hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1150 RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1150 rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
|.... .+..+++++..++.++++.++++|+|||||+||+||+.|+.
T Consensus 458 w~~~~-~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 458 WKLAK-QDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred hhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 65433 24455667888888999999999999999999999999985
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=719.88 Aligned_cols=458 Identities=21% Similarity=0.340 Sum_probs=392.3
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. +.++.+ +|+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~---g~~~~~-------~~~ 70 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA---GISPQE-------LAD 70 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999876 778866 888
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y 609 (2492)
++.+.++++|++|||. ++..+.|+++.|...++++|.+|+++|++|++..+|+||++|+|+|+++|+.
T Consensus 71 ~~~~~~~~~l~~l~I~--~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---------- 138 (511)
T PRK11893 71 RNSAAFKRLWEALNIS--YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---------- 138 (511)
T ss_pred HHHHHHHHHHHHhCCC--cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc----------
Confidence 8999999999999995 5678899999999999999999999999999999999999999999875532
Q ss_pred EEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC
Q psy15223 610 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 689 (2492)
Q Consensus 610 v~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 689 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC
Q psy15223 690 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 769 (2492)
Q Consensus 690 ~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~ 769 (2492)
++
T Consensus 139 ---------------------------------------------------------------------------~~--- 140 (511)
T PRK11893 139 ---------------------------------------------------------------------------ED--- 140 (511)
T ss_pred ---------------------------------------------------------------------------CC---
Confidence 00
Q ss_pred CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 770 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849 (2492)
Q Consensus 770 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~ 849 (2492)
.|||||||+|++++.++|||++++. +++++
T Consensus 141 ------------------------------------------~p~~~~~~~~~~~~~~~~~f~~l~~--------~~~~l 170 (511)
T PRK11893 141 ------------------------------------------GYRCPPTGAPVEWVEEESYFFRLSK--------YQDKL 170 (511)
T ss_pred ------------------------------------------CCCCCCCCCcceEEecCeEEEEcHH--------HHHHH
Confidence 0689999999999999999999998 99999
Q ss_pred HHHhhc-ceE-ecchhhHHHHHHHh-cCCCeeeec-cccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccc
Q psy15223 850 ITAINK-IKF-FPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 925 (2492)
Q Consensus 850 ~~~i~~-v~~-~P~~~~~rl~~~l~-~~~DWcISR-qr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~ 925 (2492)
.+.+++ +.+ .|+..++++.+|++ +++|||||| |+.||+|||..
T Consensus 171 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--------------------------------- 217 (511)
T PRK11893 171 LELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD--------------------------------- 217 (511)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC---------------------------------
Confidence 999976 554 69999999999999 599999999 99999999941
Q ss_pred cCchhhcCCCccCceecCCccccccccccccchhcccCc-------cccCCcCeeeeecccccchhhHHHHHHHHHHhcC
Q psy15223 926 LDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 998 (2492)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~ 998 (2492)
+.+++||||||+++|.+..+... ++..+||+|++++|+||+++|+......+.++..
T Consensus 218 ----------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 218 ----------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred ----------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCC
Confidence 13589999999999988865421 2357889999999999999776666666666645
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHHHHHHH--HHHHHHHHH
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVE--TYRRIRNTL 1075 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~--~~~kl~n~~ 1075 (2492)
..| +.+++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+....+ ....+.|++
T Consensus 282 ~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 282 PLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666 99999999995 8999999999999999999999999999999975 779999999999966543 334566655
Q ss_pred HHHhh----cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhh
Q psy15223 1076 RFLLA----NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 1151 (2492)
Q Consensus 1076 rf~l~----~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl 1151 (2492)
..+.. ...++.+. ...+...|+|++++++++.+.+.++|++|+|+.|++.+++|+ ..++.|++..|++.
T Consensus 360 ~r~~~~~~~~~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~ 432 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPE-----PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHhcCCCCCC-----CcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChh
Confidence 43322 22222221 123467899999999999999999999999999999999999 45899999999865
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1152 ~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
... .+..+++++..+++++++.++++|+|||||+||+||+.|+.
T Consensus 433 ~~~-~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 433 LAK-TDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred hhc-CCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 432 24456678899999999999999999999999999999974
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=699.74 Aligned_cols=463 Identities=22% Similarity=0.330 Sum_probs=385.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
.+++|+|++|||||||.|||||+++++++|+++||+||+||+|.|++|||+||+||+.+|++. +.+|.+ +
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~---g~~p~e-------~ 136 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN---GRNPPE-------H 136 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc---CCChHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999876 777765 6
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+.++.+.+++++++||+ +||++++|++|.|.+.++++|.+|+++|+||++.++++|||+|++.+.+.|+.
T Consensus 137 ~~~~~~~~~~~~~~l~I--~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~-------- 206 (616)
T PLN02224 137 CDIISQSYRTLWKDLDI--AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL-------- 206 (616)
T ss_pred HHHHHHHHHHHHHHcCC--CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc--------
Confidence 77777888999999999 77899999999999999999999999999999999999999999876443221
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
+ -+.|..||.|++++.+++||+++++ +++
T Consensus 207 ------------------------------~-------------~~~~~~~~~~~~~~~e~~~ff~Ls~--------~~~ 235 (616)
T PLN02224 207 ------------------------------E-------------NNCCPVHQMPCVARKEDNYFFALSK--------YQK 235 (616)
T ss_pred ------------------------------C-------------CCCCCCCCCcceEEecceEEEEhHH--------HHH
Confidence 0 0125568999999999999999999 899
Q ss_pred HHHHhhhc-ce-EecccchhHHHHhhh-CCCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc
Q psy15223 1998 SAITAINK-IK-FFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073 (2492)
Q Consensus 1998 ~~~~~~~~-v~-~~P~~~~~~~~~~l~-~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w 2073 (2492)
.+.+.+++ -. +.|+..++.+.+||+ +++||||||.+ .||+|+|..
T Consensus 236 ~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~------------------------------- 284 (616)
T PLN02224 236 PLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDD------------------------------- 284 (616)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCC-------------------------------
Confidence 99999863 33 468888899999999 59999999987 799999920
Q ss_pred cccchhhhcCCCccCceecccccccccccCcchhhhccCCcc-------ccCCcCceeeecccchhhhhHHHHHHHHHHh
Q psy15223 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 2146 (2492)
Q Consensus 2074 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l 2146 (2492)
+..|++||||+.+.|++.+..... +.++||.|+++.|+|+++ ||..+|+++++
T Consensus 285 ------------------~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~--fH~i~wpa~l~ 344 (616)
T PLN02224 285 ------------------DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILR--FHAVYWPAMLM 344 (616)
T ss_pred ------------------CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccc--cHHHHHHHHHH
Confidence 236899999999999987754221 134789999999999998 89999999887
Q ss_pred c-CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHHHH
Q psy15223 2147 N-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRRIR 2222 (2492)
Q Consensus 2147 ~-~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~kl~ 2222 (2492)
. +-.+++++++||++ +.+|+|||||+||+|+|.+++++||+|++||||++ +++.+|.+|+++.+.+..+ ..+.+.
T Consensus 345 ~~g~~~P~~i~~~g~l-~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lg 423 (616)
T PLN02224 345 SAGLELPKMVFGHGFL-TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423 (616)
T ss_pred HCCCCCCcEEEecccE-ecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 33455899999995 58999999999999999999999999999999997 5788999999998755433 566777
Q ss_pred HHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhc
Q psy15223 2223 NTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 2302 (2492)
Q Consensus 2223 n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~ 2302 (2492)
|.+.+++.....+..+ ..+........|++++++++++++++.++|++|+|++|++.+++|+ ..+|+|++..++|..
T Consensus 424 Nll~R~l~~~~k~~~~-~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~l 500 (616)
T PLN02224 424 NLLNRTLGLLKKNCES-TLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWFL 500 (616)
T ss_pred HHHHHHHHHHHHhcCC-cCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchhh
Confidence 7776554432221111 0011111234589999999999999999999999999999999998 679999999888743
Q ss_pred cccC--ChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2303 TTKK--NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2303 ~~~~--~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.... +..+..++..+++++++.++.||+|||||+||+||+.|+.
T Consensus 501 ~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 501 FKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 2221 2223456777899999999999999999999999999975
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-69 Score=724.95 Aligned_cols=481 Identities=20% Similarity=0.283 Sum_probs=393.8
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 1679 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~ 1679 (2492)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.+|++. +++|.+ +++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~---g~~p~e-------~~~ 71 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE---GITPEE-------LIA 71 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4699999999999999999999999999999999999999999999999999999999986 888877 788
Q ss_pred HHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEE
Q psy15223 1680 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 1759 (2492)
Q Consensus 1680 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~y 1759 (2492)
++.+.++++|++||+++| .+++|++|.|.+.++++|.+|+++|+||++..+|+|||.|+|+|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g--------- 140 (673)
T PRK00133 72 RYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG--------- 140 (673)
T ss_pred HHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec---------
Confidence 999999999999999754 688999999999999999999999999999999999999999999976530
Q ss_pred EEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC
Q psy15223 1760 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 1839 (2492)
Q Consensus 1760 v~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 1839 (2492)
|.|
T Consensus 141 -------------------------------~cp---------------------------------------------- 143 (673)
T PRK00133 141 -------------------------------TCP---------------------------------------------- 143 (673)
T ss_pred -------------------------------ccC----------------------------------------------
Confidence 001
Q ss_pred cCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC
Q psy15223 1840 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 1919 (2492)
Q Consensus 1840 ~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~ 1919 (2492)
.++.. |.
T Consensus 144 ------------------------------------------------------~C~~~-------------------d~ 150 (673)
T PRK00133 144 ------------------------------------------------------KCGAE-------------------DQ 150 (673)
T ss_pred ------------------------------------------------------CCCCc-------------------cc
Confidence 00000 01
Q ss_pred CCccccCCCC-CCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1920 DGNFISTLPL-FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1920 ~G~~~~~~~~-~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
+|..++.||. +... .| ..|+|++||+|++++.++|||+++++ +++.
T Consensus 151 ~g~~ce~cg~~~~~~-----------~l--------------~~~~~~~~g~~~e~~~~~~~f~~l~~--------~~~~ 197 (673)
T PRK00133 151 YGDNCEVCGATYSPT-----------EL--------------INPKSAISGATPVLKESEHFFFKLPR--------FEEF 197 (673)
T ss_pred CCchhhhccccCChH-----------hh--------------cCCccccCCCcceEEecceEEEEHHH--------HHHH
Confidence 1111222221 0000 01 12789999999999999999999999 9999
Q ss_pred HHHhhhc-ceEecccchhHHHHhhh-CCCCcccccccCC-CceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccc
Q psy15223 1999 AITAINK-IKFFPSWGKDRLKSMIL-NRPDWTISRQRHW-GVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 2075 (2492)
Q Consensus 1999 ~~~~~~~-v~~~P~~~~~~~~~~l~-~~~DW~ISRqr~W-G~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~ 2075 (2492)
+++.+++ ..| |+..++.+.+||+ +++|||||||+.| |+|+|-
T Consensus 198 l~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~---------------------------------- 242 (673)
T PRK00133 198 LKEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG---------------------------------- 242 (673)
T ss_pred HHHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC----------------------------------
Confidence 9999864 565 8899999999997 6999999999999 999991
Q ss_pred cchhhhcCCCccCceecccccccccccCcchhhhccC-Cc-----cccCCcCce-----eeecccchhhhhHHHHHHHHH
Q psy15223 2076 LDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-SH-----KKQLIFPAD-----LYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2076 ~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-~~-----~~~~~~P~D-----l~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
.+..|++||||+.+.|++.... .. .++.|||.+ +++.|+|+++ ||..+|+++
T Consensus 243 ---------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~wpa~ 305 (673)
T PRK00133 243 ---------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIY--FHTLFWPAM 305 (673)
T ss_pred ---------------CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchh--HHHHHHHHH
Confidence 0235899999999998876631 11 124456333 8999999998 889999888
Q ss_pred Hhc-CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCC-CcccccHHHHHHH--HHHHH
Q psy15223 2145 ILN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYS-KDLSISNEILNRV--VETYR 2219 (2492)
Q Consensus 2145 ~l~-~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~-~d~~fs~~~l~~~--~~~~~ 2219 (2492)
++. +..++++|++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++ ++.+ +|.+|+++.+... .+..+
T Consensus 306 l~a~g~~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~ 384 (673)
T PRK00133 306 LEGAGYRLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVG 384 (673)
T ss_pred HHhCCCCCCCEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 764 4455699999999997 999999999999999999999999999999996 5677 8999999987543 34567
Q ss_pred HHHHHHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhh
Q psy15223 2220 RIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 2298 (2492)
Q Consensus 2220 kl~n~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K 2298 (2492)
+++|.+.++...+.. +... .+ ....|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|
T Consensus 385 ~l~Nl~~R~~~~~~k~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~k 456 (673)
T PRK00133 385 KVVNFASRTAGFINKRFDGK---LP---DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNE 456 (673)
T ss_pred HHHHHHHHHHHHHHHhcCCC---CC---CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 888877665443221 2211 11 245699999999999999999999999999999999998 68999999999
Q ss_pred hhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2299 DRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2299 ~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++.... .+..+..+++.++.++++.++++|+|||||+||+||+.|+.
T Consensus 457 pw~~~~-~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 457 PWKLAK-QDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred Chhhhc-CCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 864432 23445667788888999999999999999999999999985
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-68 Score=709.25 Aligned_cols=458 Identities=21% Similarity=0.336 Sum_probs=390.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 1679 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~ 1679 (2492)
++|+|++|||||||.+||||+++++.+|+++||+||+|++|.|++|+|+||.||+.+|+++ ++++.+ ++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~---g~~~~~-------~~~ 70 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA---GISPQE-------LAD 70 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc---CCCHHH-------HHH
Confidence 4799999999999999999999999999999999999999999999999999999999876 788866 788
Q ss_pred HHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEE
Q psy15223 1680 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 1759 (2492)
Q Consensus 1680 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~y 1759 (2492)
++.+.++++|++|||. ++..+.|+++.|...++++|.+|+++|++|++..+|+||+.|+|+|+++|+.
T Consensus 71 ~~~~~~~~~l~~l~I~--~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---------- 138 (511)
T PRK11893 71 RNSAAFKRLWEALNIS--YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---------- 138 (511)
T ss_pred HHHHHHHHHHHHhCCC--cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc----------
Confidence 8999999999999995 5577899999999999999999999999999999999999999998775521
Q ss_pred EEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC
Q psy15223 1760 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 1839 (2492)
Q Consensus 1760 v~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 1839 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC
Q psy15223 1840 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 1919 (2492)
Q Consensus 1840 ~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~ 1919 (2492)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 1920 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 1999 (2492)
Q Consensus 1920 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~ 1999 (2492)
+. .|+|||||+|++++.++|||+++++ +++++
T Consensus 139 ----------------------------~~------------~p~~~~~~~~~~~~~~~~~f~~l~~--------~~~~l 170 (511)
T PRK11893 139 ----------------------------ED------------GYRCPPTGAPVEWVEEESYFFRLSK--------YQDKL 170 (511)
T ss_pred ----------------------------CC------------CCCCCCCCCcceEEecCeEEEEcHH--------HHHHH
Confidence 00 0689999999999999999999999 99999
Q ss_pred HHhhhc-ceE-ecccchhHHHHhhh-CCCCccccc-ccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccc
Q psy15223 2000 ITAINK-IKF-FPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 2075 (2492)
Q Consensus 2000 ~~~~~~-v~~-~P~~~~~~~~~~l~-~~~DW~ISR-qr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~ 2075 (2492)
.+.+++ +.+ .|+..++++.+|++ +++|||||| |++||+|||..
T Consensus 171 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--------------------------------- 217 (511)
T PRK11893 171 LELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD--------------------------------- 217 (511)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC---------------------------------
Confidence 999976 454 69999999999999 599999999 99999999941
Q ss_pred cchhhhcCCCccCceecccccccccccCcchhhhccCCc-------cccCCcCceeeecccchhhhhHHHHHHHHHHhcC
Q psy15223 2076 LDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK 2148 (2492)
Q Consensus 2076 ~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~ 2148 (2492)
+.+++||||||+++|++...... +++.+||.|++++|+||+++|+......+.++..
T Consensus 218 ----------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 218 ----------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred ----------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCC
Confidence 13589999999999998864321 2356789999999999999777666666666645
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHHHHHHH--HHHHHHHHH
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVE--TYRRIRNTL 2225 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~--~~~kl~n~~ 2225 (2492)
..| +++++|||+++ +|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+..+.+ ..+.++|++
T Consensus 282 ~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~ 359 (511)
T PRK11893 282 PLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLA 359 (511)
T ss_pred CCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666 99999999995 8999999999999999999999999999999975 789999999999966543 335566665
Q ss_pred HHHHhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhh
Q psy15223 2226 RFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRL 2301 (2492)
Q Consensus 2226 r~~~~~----~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l 2301 (2492)
..+... ..++.+. ...+...|+|++++++++.+.+.++|++|+|+.|++.+++|+ ..+|+|++..|++.
T Consensus 360 ~r~~~~~~~~~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~ 432 (511)
T PRK11893 360 QRTLSMIAKNFDGKVPE-----PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHhcCCCCCC-----CcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChh
Confidence 433221 1222221 123467899999999999999999999999999999999999 45899999888864
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2302 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2302 ~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
... .+....++++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 433 ~~~-~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 433 LAK-TDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred hhc-CCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 432 24455677899999999999999999999999999999974
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=666.99 Aligned_cols=327 Identities=46% Similarity=0.868 Sum_probs=303.0
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc-------CCCHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQN 522 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~-------~~~~~e~~~ 522 (2492)
++|+|++|||||||.+|||||++++++|+++||+||+||+|.|++||||||+|||.+|++.+|. +.+++++++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999998764 457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc
Q psy15223 523 KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 602 (2492)
Q Consensus 523 ~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~ 602 (2492)
.|+++|+++++.++++|++||++.||+++|.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999877766
Q ss_pred eeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHH
Q psy15223 603 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 682 (2492)
Q Consensus 603 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~ 682 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCC
Q psy15223 683 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 762 (2492)
Q Consensus 683 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~ 762 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 763 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~ 842 (2492)
|+++++++|||+++++
T Consensus 144 ----------------------------------------------------------~v~~~~~~qwf~~l~~------ 159 (338)
T cd00818 144 ----------------------------------------------------------PLIYRATPQWFIRVTK------ 159 (338)
T ss_pred ----------------------------------------------------------EEEEEecCeEEEEcHH------
Confidence 2345677899999998
Q ss_pred HHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 843 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 843 ~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++++++.+++++|+|+..++++.+||++++||||||||.||+|||+|+|++||...+
T Consensus 160 --~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~-------------------- 217 (338)
T cd00818 160 --IKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLV-------------------- 217 (338)
T ss_pred --HHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCeEEE--------------------
Confidence 9999999999999999999999999999999999999999999999999988775431
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHHhcCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 999 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~ 999 (2492)
.++++|+|||||||+++.+.++... +++++||+|++++|+||+++|||++++++.++.+.
T Consensus 218 -----------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~ 280 (338)
T cd00818 218 -----------------RRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGK 280 (338)
T ss_pred -----------------ecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCC
Confidence 3578999999999999988775432 34678999999999999999999999999999999
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-Cccccccc
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSI 1056 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~f 1056 (2492)
.||+++++||++++.+|+|||||+||+|+|++++++||+|++|||+++. +.++|++|
T Consensus 281 ~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 281 APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999974 57888875
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=655.28 Aligned_cols=327 Identities=46% Similarity=0.867 Sum_probs=301.7
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhcc-------CCCHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQN 1672 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~-------~~~~~e~~~ 1672 (2492)
++|+|++|||||||.+||||+++++++|+++||+||+||+|.|++||||||+|||.+|++.+|. +.+++++.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999998764 457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCccccccccccee
Q psy15223 1673 KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK 1752 (2492)
Q Consensus 1673 ~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~ 1752 (2492)
.|++++.++++.++++|++||++.||+++|.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999888877
Q ss_pred eecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHH
Q psy15223 1753 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKS 1832 (2492)
Q Consensus 1753 ~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~ 1832 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCC
Q psy15223 1833 CLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 1912 (2492)
Q Consensus 1833 ~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~ 1912 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchh
Q psy15223 1913 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 1992 (2492)
Q Consensus 1913 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~ 1992 (2492)
|++++.++|||+++++
T Consensus 144 ----------------------------------------------------------~v~~~~~~qwf~~l~~------ 159 (338)
T cd00818 144 ----------------------------------------------------------PLIYRATPQWFIRVTK------ 159 (338)
T ss_pred ----------------------------------------------------------EEEEEecCeEEEEcHH------
Confidence 1234567899999998
Q ss_pred HHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1993 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1993 ~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++++++.+++++|+|+..++++.+||++++||||||||+||+|||+|+|++++.+.+
T Consensus 160 --~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~-------------------- 217 (338)
T cd00818 160 --IKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLV-------------------- 217 (338)
T ss_pred --HHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCeEEE--------------------
Confidence 9999999999999999999999999999999999999999999999999887654320
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCC---ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCC
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS---HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 2149 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~---~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~ 2149 (2492)
.++++|+||||||++++++.++.. .+++.+||+|++++|+||+++|||++++++.++.+.
T Consensus 218 -----------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~ 280 (338)
T cd00818 218 -----------------RRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGK 280 (338)
T ss_pred -----------------ecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCC
Confidence 457899999999999998877432 234678999999999999999999999999999999
Q ss_pred ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2150 ~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
.||+++++||++++.+|+|||||+||+|+|.+++++||+|++|||+++ ++.++|++|
T Consensus 281 ~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 281 APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 999999999999999999999999999999999999999999999996 468889875
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-66 Score=655.17 Aligned_cols=488 Identities=21% Similarity=0.338 Sum_probs=404.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
.++|+|+.++|||||.|||||+++++.+||++||+||+|++|+|+.|.|.||+||+.+|+++ |++|++ ++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---g~tP~e-------l~ 73 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---GITPQE-------LV 73 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc---CCCHHH-------HH
Confidence 47899999999999999999999999999999999999999999999999999999999998 999998 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
+++.+.+++.++.|+|++ |++.+|+++.+.+.++++|.+|+++|+||.+..++.||++|+++|+|.+|+=.
T Consensus 74 d~~~~~~~~~~~~l~Isf--D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~------- 144 (558)
T COG0143 74 DKNHEEFKELFKALNISF--DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGT------- 144 (558)
T ss_pred HHHHHHHHHHHHHhCCcc--cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheecc-------
Confidence 888899999999999955 78999999999999999999999999999999999999999999999988610
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
.|.- +.+
T Consensus 145 ----------------------------------------------cp~c----------g~~----------------- 151 (558)
T COG0143 145 ----------------------------------------------CPKC----------GGE----------------- 151 (558)
T ss_pred ----------------------------------------------CCCc----------Ccc-----------------
Confidence 0000 000
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+ +.|.++-.+++. .+|
T Consensus 152 ------------~------------------------------------------arGD~Ce~Cg~~--------~~P-- 167 (558)
T COG0143 152 ------------D------------------------------------------ARGDQCENCGRT--------LDP-- 167 (558)
T ss_pred ------------c------------------------------------------cCcchhhhccCc--------CCc--
Confidence 0 000000000000 011
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
..-.-|+||+||...++|.+++||+++++ +.+.
T Consensus 168 ---------------------------------------~~l~~p~~~i~g~~p~~r~~~hyFf~L~~--------~~~~ 200 (558)
T COG0143 168 ---------------------------------------TELINPVCVISGATPEVREEEHYFFRLSK--------FQDK 200 (558)
T ss_pred ---------------------------------------hhcCCCeeEeeCCCcccccceeEEEEHHH--------hHHH
Confidence 01123899999999999999999999999 8999
Q ss_pred HHHhhhc--ceEecccchhHHHHhhh-CCCCccccc-ccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccc
Q psy15223 1999 AITAINK--IKFFPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQ 2074 (2492)
Q Consensus 1999 ~~~~~~~--v~~~P~~~~~~~~~~l~-~~~DW~ISR-qr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~ 2074 (2492)
+++++++ -.+.|++.++.+.+||+ +++|||||| .-.||+|+|-
T Consensus 201 L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~--------------------------------- 247 (558)
T COG0143 201 LLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG--------------------------------- 247 (558)
T ss_pred HHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCC---------------------------------
Confidence 9999975 35589999999999998 599999999 8899999991
Q ss_pred ccchhhhcCCCccCceecccccccccccCcchhhhccCCc------cccCCcCce----eeecccchhhhhHHHHHHHHH
Q psy15223 2075 NLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH------KKQLIFPAD----LYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2075 ~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~------~~~~~~P~D----l~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
-...|++||||.-+.|.+.+.... .++.|||.| +|+.|+|+++ ||+.+|+++
T Consensus 248 ----------------~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~--FHav~wPam 309 (558)
T COG0143 248 ----------------DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIR--FHAVYWPAM 309 (558)
T ss_pred ----------------CCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCc--chhhHHHHH
Confidence 023589999999999999886532 236679998 9999999999 999999999
Q ss_pred HhcCCc-cccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHH
Q psy15223 2145 ILNKSA-PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRR 2220 (2492)
Q Consensus 2145 ~l~~~~-pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~k 2220 (2492)
++.... .+++|++|||++ .+|+|||||+||+|+|.++++.||+|++||||+. .+.++|.+||++.+.+..| ..++
T Consensus 310 L~~~~~~lP~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~ 388 (558)
T COG0143 310 LMAAGLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANK 388 (558)
T ss_pred HHhCCCCCCCEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 987544 458899999988 7899999999999999999999999999999996 6899999999999977654 4566
Q ss_pred HHHHHHHHHhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHh
Q psy15223 2221 IRNTLRFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 2296 (2492)
Q Consensus 2221 l~n~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~ 2296 (2492)
+-|.+...++. .++..|... .... ..|+.++..+.++.+.+.++|+.++|++|+..+++++ ...|.||+.
T Consensus 389 lgNl~~R~~~fi~k~~~g~vp~~~---~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~ 462 (558)
T COG0143 389 LGNLANRTLGFINKYFDGVVPAAG---APDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDE 462 (558)
T ss_pred HHHHHHHHHHHHHhccCCcCCccc---cccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhc
Confidence 66666555543 332222211 1123 7899999999999999999999999999999999999 569999998
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2297 LKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2297 ~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
.+||-.......++..++..++.++++.+..+|+||||.+|++||+.|+..
T Consensus 463 ~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 463 QAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred CCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 877654443224555667888889999999999999999999999999853
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=654.31 Aligned_cols=487 Identities=22% Similarity=0.369 Sum_probs=406.0
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
.++|+|+.++|||||.|||||++.++.+||++||+||+|++|+|+.|+|+||+||+.+|+++ +++|++ ++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---g~tP~e-------l~ 73 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---GITPQE-------LV 73 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc---CCCHHH-------HH
Confidence 46899999999999999999999999999999999999999999999999999999999998 999999 88
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++.+.+++.|+.|+| ++|++.+|+++.+.+.++++|.+|+++|+||.+..+++||++|+++|+|.+|+=.
T Consensus 74 d~~~~~~~~~~~~l~I--sfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~------- 144 (558)
T COG0143 74 DKNHEEFKELFKALNI--SFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGT------- 144 (558)
T ss_pred HHHHHHHHHHHHHhCC--cccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheecc-------
Confidence 8899999999999999 5578999999999999999999999999999999999999999999999998710
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
.|. + |
T Consensus 145 ----------------------------------------------cp~---c--------------------------g 149 (558)
T COG0143 145 ----------------------------------------------CPK---C--------------------------G 149 (558)
T ss_pred ----------------------------------------------CCC---c--------------------------C
Confidence 000 0 0
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
. .+-- +|. |..+|- .++|.
T Consensus 150 ~----------~~ar-----------------------GD~-----------------------Ce~Cg~----~~~P~- 168 (558)
T COG0143 150 G----------EDAR-----------------------GDQ-----------------------CENCGR----TLDPT- 168 (558)
T ss_pred c----------cccC-----------------------cch-----------------------hhhccC----cCCch-
Confidence 0 0000 000 001110 00110
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.-.-|.||.||...++|.+++||+++++ +.++
T Consensus 169 ----------------------------------------~l~~p~~~i~g~~p~~r~~~hyFf~L~~--------~~~~ 200 (558)
T COG0143 169 ----------------------------------------ELINPVCVISGATPEVREEEHYFFRLSK--------FQDK 200 (558)
T ss_pred ----------------------------------------hcCCCeeEeeCCCcccccceeEEEEHHH--------hHHH
Confidence 0012789999999999999999999998 8999
Q ss_pred HHHHhhcc--eEecchhhHHHHHHHh-cCCCeeeec-cccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccc
Q psy15223 849 AITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISR-QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQ 924 (2492)
Q Consensus 849 ~~~~i~~v--~~~P~~~~~rl~~~l~-~~~DWcISR-qr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~ 924 (2492)
+++.+++- ...|...++.+.+||+ ++.|||||| .-.||+|+|-
T Consensus 201 L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~--------------------------------- 247 (558)
T COG0143 201 LLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG--------------------------------- 247 (558)
T ss_pred HHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCC---------------------------------
Confidence 99999863 4589999999999998 599999999 8899999991
Q ss_pred ccCchhhcCCCccCceecCCccccccccccccchhcccCc------cccCCcCee----eeecccccchhhHHHHHHHHH
Q psy15223 925 NLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH------KKQLIFPAD----LYLEGSDQHRGWFHSSLLTSI 994 (2492)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~------~~~~~~p~D----l~~~G~D~~rgwf~s~l~~~~ 994 (2492)
-...|++||||.-+.|.+.++... .++.|||+| +|+.|+|+++ ||+.+|+++
T Consensus 248 ----------------~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~--FHav~wPam 309 (558)
T COG0143 248 ----------------DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIR--FHAVYWPAM 309 (558)
T ss_pred ----------------CCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCc--chhhHHHHH
Confidence 123589999999999998886642 347899999 9999999999 999999999
Q ss_pred HhcCCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHH--HHHH
Q psy15223 995 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRR 1070 (2492)
Q Consensus 995 ~~~~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~--~~~k 1070 (2492)
++.-..| +++|++|||++ .+|+|||||+||+|+|.++++.||+|++||||+. .+.++|.+||++.+.+..+ ..++
T Consensus 310 L~~~~~~lP~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~ 388 (558)
T COG0143 310 LMAAGLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANK 388 (558)
T ss_pred HHhCCCCCCCEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8875544 59999999998 7899999999999999999999999999999996 6788999999999977653 5566
Q ss_pred HHHHHHHHhhcCC----CCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHh
Q psy15223 1071 IRNTLRFLLANTS----DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 1146 (2492)
Q Consensus 1071 l~n~~rf~l~~l~----~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~ 1146 (2492)
+-|.+...++.+. +-.|... . ... +.|+.++..+.++.+.+.++|++++|++|+..+++++ ...|.||+.
T Consensus 389 lgNl~~R~~~fi~k~~~g~vp~~~--~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~ 462 (558)
T COG0143 389 LGNLANRTLGFINKYFDGVVPAAG--A-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDE 462 (558)
T ss_pred HHHHHHHHHHHHHhccCCcCCccc--c-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhc
Confidence 7777666655333 2222211 1 123 7899999999999999999999999999999999999 459999998
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1147 LKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1147 ~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.+||-........+.+++..++.++++.+..+|+||||.+|+++|+.|+.
T Consensus 463 ~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 463 QAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred CCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCC
Confidence 88876544322455567788888999999999999999999999999985
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=575.39 Aligned_cols=305 Identities=38% Similarity=0.719 Sum_probs=280.9
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---CCCHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARAL 527 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---~~~~~e~~~~~~~~ 527 (2492)
+|+|++|||||||.+||||+++++++|+++||+||+||+|.|++||||||+|||.+|++..+. ...++++.+.|+++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999997653 45678999999999
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccE
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s 607 (2492)
|+++.+.++++|++|||+.||+++|.|+++.|...++++|.+|+++|+||++.++|
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999999999999999999999999999999999999975443
Q ss_pred EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 608 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccccc
Q psy15223 688 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 767 (2492)
Q Consensus 688 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~v 767 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 768 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847 (2492)
Q Consensus 768 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~ 847 (2492)
+.++|||+++++ +++
T Consensus 137 ---------------------------------------------------------~~~~~~f~~~~~--------l~~ 151 (312)
T cd00668 137 ---------------------------------------------------------RITEQWFFDMPK--------FKE 151 (312)
T ss_pred ---------------------------------------------------------EeeeeEEEEcHH--------HHH
Confidence 334589999988 999
Q ss_pred HHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 848 SAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 848 ~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
++++.+++++|.|+..++++.+||++..|||||||+.||+|+|
T Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P------------------------------------- 194 (312)
T cd00668 152 KLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP------------------------------------- 194 (312)
T ss_pred HHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC-------------------------------------
Confidence 9999999988999999999999999888999999999999999
Q ss_pred chhhcCCCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceE
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKA 1004 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~ 1004 (2492)
++++||||||++++.++++...+ +..+||.|+|++|+||+++|+.+.++.+.++.+..|+++
T Consensus 195 ---------------~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~ 259 (312)
T cd00668 195 ---------------EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKN 259 (312)
T ss_pred ---------------cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcce
Confidence 25899999999999888765432 356789999999999999999999999999988889999
Q ss_pred EEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 1005 LLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 1005 v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
+++|||+++++|+|||||+||+|+|++++++||+|++|||+++ +++.+|.+|
T Consensus 260 ~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 260 LLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred eEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999988889999999999999999999999999999997 458888876
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=566.66 Aligned_cols=305 Identities=38% Similarity=0.714 Sum_probs=280.2
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhcc---CCCHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---NLSPIEIQNKARAL 1677 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~ 1677 (2492)
||+|++|||||||.+||||+++++++|+++||+||+||+|.|++||||||+|||.+|++..+. ...++++.+.|+++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999998653 45678999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+.++.+.++++|++||+++||+++|.|++|.|...++++|.+|+++|+||++.++|
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999999999999999999999999999999999999986655
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
+.++|||+++++ +++
T Consensus 137 ---------------------------------------------------------~~~~~~f~~~~~--------l~~ 151 (312)
T cd00668 137 ---------------------------------------------------------RITEQWFFDMPK--------FKE 151 (312)
T ss_pred ---------------------------------------------------------EeeeeEEEEcHH--------HHH
Confidence 223478888888 899
Q ss_pred HHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1998 SAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1998 ~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
++++.+++++|.|+..++++.+||++..|||||||++||+|+|
T Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P------------------------------------- 194 (312)
T cd00668 152 KLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP------------------------------------- 194 (312)
T ss_pred HHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC-------------------------------------
Confidence 9999999888999999999999999888999999999999999
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccE
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKA 2154 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~ 2154 (2492)
++++||||||++++++++.... +++.+||.|++++|+||+++|+..+++.+.++.+..|+++
T Consensus 195 ---------------~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~ 259 (312)
T cd00668 195 ---------------EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKN 259 (312)
T ss_pred ---------------cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcce
Confidence 1589999999999998876433 2356789999999999999999999999999888889999
Q ss_pred EEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2155 LLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2155 v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
+++|||+++.+|+|||||+||+|+|.+++++||+|++|||+++ +++++|.+|
T Consensus 260 ~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 260 LLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred eEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999988889999999999999999999999999999996 568888876
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=503.67 Aligned_cols=468 Identities=22% Similarity=0.359 Sum_probs=385.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 527 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~ 527 (2492)
+.+.|++++|.-|+|..+||||+++-+++|.|+||+|++|..|.|..|+|.|||.|+..|+.. +.+|.+ +
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn---G~~P~e-------~ 106 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN---GRNPPE-------L 106 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc---CCChHH-------H
Confidence 456899999999999999999999999999999999999999999999999999999998875 788988 6
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccE
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s 607 (2492)
+++..+.+++.++..||.+ +++.+|+||.+++.|++++..+.++|+||++....+||.+|+|++.|++|.-.
T Consensus 107 cDr~s~~f~qL~k~~gi~y--t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~------ 178 (578)
T KOG0436|consen 107 CDRISQSFRQLWKDAGIAY--TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN------ 178 (578)
T ss_pred HhhhhHHHHHHHHHhCcch--hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC------
Confidence 7778888999999999955 79999999999999999999999999999999999999999999999877510
Q ss_pred EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 608 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
|.
T Consensus 179 ------------------------------------------------p~------------------------------ 180 (578)
T KOG0436|consen 179 ------------------------------------------------PC------------------------------ 180 (578)
T ss_pred ------------------------------------------------CC------------------------------
Confidence 00
Q ss_pred CCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccccc
Q psy15223 688 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 767 (2492)
Q Consensus 688 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~v 767 (2492)
T Consensus 181 -------------------------------------------------------------------------------- 180 (578)
T KOG0436|consen 181 -------------------------------------------------------------------------------- 180 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 768 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847 (2492)
Q Consensus 768 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~ 847 (2492)
..|+ ++.--||+||.++..+.+|+.+++ +++
T Consensus 181 -~~gk----------------------------------------~vsmEsg~~vv~~kE~NY~FrLSk--------fqk 211 (578)
T KOG0436|consen 181 -PPGK----------------------------------------VVSMESGNPVVWRKEDNYFFRLSK--------FQK 211 (578)
T ss_pred -CCCc----------------------------------------eeeeccCCceeEecccceeeeHHh--------hhh
Confidence 0000 011247889999999999999999 888
Q ss_pred HHHHHhhc-ceE-ecchhhHHHHHHHh-cCCCeeeec--cc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCc
Q psy15223 848 SAITAINK-IKF-FPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 921 (2492)
Q Consensus 848 ~~~~~i~~-v~~-~P~~~~~rl~~~l~-~~~DWcISR--qr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 921 (2492)
.+.+.+++ -+| .|+..++....||+ +++|-.||| +| .||+|+|-
T Consensus 212 ~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~------------------------------ 261 (578)
T KOG0436|consen 212 PLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG------------------------------ 261 (578)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC------------------------------
Confidence 89998875 444 78888999999999 799999999 66 99999992
Q ss_pred cccccCchhhcCCCccCceecCCccccccccccccchhcccCccc-------cCCcCeeeeecccccchhhHHHHHHHHH
Q psy15223 922 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK-------QLIFPADLYLEGSDQHRGWFHSSLLTSI 994 (2492)
Q Consensus 922 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~-------~~~~p~Dl~~~G~D~~rgwf~s~l~~~~ 994 (2492)
.+..+++||||+-+.|++++++.++. ..+||+.+|+.|+|++| ||...|++.
T Consensus 262 -------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr--FHavYWPaf 320 (578)
T KOG0436|consen 262 -------------------DDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR--FHAVYWPAF 320 (578)
T ss_pred -------------------CCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhh--hhhhhhHHH
Confidence 24578999999999999999876421 57899999999999999 999999999
Q ss_pred HhcCCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHH
Q psy15223 995 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIR 1072 (2492)
Q Consensus 995 ~~~~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~ 1072 (2492)
++....| .+.+++||++. .+|.|||||+||||+|.+++++||+|++|||++. +.++.|-+|+++.+....+. .|+
T Consensus 321 LmaAGlplP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~--~La 397 (578)
T KOG0436|consen 321 LMAAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA--HLA 397 (578)
T ss_pred HHhcCCCCccEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH--HHH
Confidence 8875554 59999999998 8999999999999999999999999999999996 67899999999988766543 344
Q ss_pred HHHHHHhhcCCC--CCCCc---ccc-cccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHh
Q psy15223 1073 NTLRFLLANTSD--FNPNI---NII-KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 1146 (2492)
Q Consensus 1073 n~~rf~l~~l~~--~~~~~---~~~-~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~ 1146 (2492)
|++..++.++.+ ++++. ..+ +.......+.-+.+.++++.+.+.+.|++|.+..|++++...++. .|-|++.
T Consensus 398 ~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~--~ntlvq~ 475 (578)
T KOG0436|consen 398 NTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA--GNTLVQQ 475 (578)
T ss_pred HHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh--hhhhhhh
Confidence 444444433322 22221 011 111222334457788999999999999999999999999999865 7899998
Q ss_pred hhhhhcccc-C-ChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1147 LKDRLYTTK-K-NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1147 ~Kdrl~~~~-~-~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.++|-...+ . +.+..........++|+.+..+|.||+|-++.++++.|+-
T Consensus 476 ~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgv 527 (578)
T KOG0436|consen 476 RAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGV 527 (578)
T ss_pred cCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCC
Confidence 888754322 2 2333444455567889999999999999999999999974
|
|
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-54 Score=493.24 Aligned_cols=469 Identities=22% Similarity=0.345 Sum_probs=383.0
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
+.+.|+++.|.-|+|..+||||+++-+++|.++||+|++|..|.|..|+|.||+.|+.+|+.. |.+|.+ +
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn---G~~P~e-------~ 106 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN---GRNPPE-------L 106 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc---CCChHH-------H
Confidence 446899999999999999999999999999999999999999999999999999999999876 788887 5
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+++..+.+.+.++..|+.+ +++.+|+||.++..|++.+..++++|+||++.+...||.+|+|++.|++|.-
T Consensus 107 cDr~s~~f~qL~k~~gi~y--t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k------- 177 (578)
T KOG0436|consen 107 CDRISQSFRQLWKDAGIAY--TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK------- 177 (578)
T ss_pred HhhhhHHHHHHHHHhCcch--hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc-------
Confidence 6677788888899999955 7999999999999999999999999999999999999999999998877641
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
+ |.
T Consensus 178 --------~---------------------------------------p~------------------------------ 180 (578)
T KOG0436|consen 178 --------N---------------------------------------PC------------------------------ 180 (578)
T ss_pred --------C---------------------------------------CC------------------------------
Confidence 0 00
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
.
T Consensus 181 ------------------------~------------------------------------------------------- 181 (578)
T KOG0436|consen 181 ------------------------P------------------------------------------------------- 181 (578)
T ss_pred ------------------------C-------------------------------------------------------
Confidence 0
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
.|+ ++.--||+||.++-.+.+|+++++ +++
T Consensus 182 --~gk----------------------------------------~vsmEsg~~vv~~kE~NY~FrLSk--------fqk 211 (578)
T KOG0436|consen 182 --PGK----------------------------------------VVSMESGNPVVWRKEDNYFFRLSK--------FQK 211 (578)
T ss_pred --CCc----------------------------------------eeeeccCCceeEecccceeeeHHh--------hhh
Confidence 000 111247889999999999999999 778
Q ss_pred HHHHhhh-cceE-ecccchhHHHHhhh-CCCCccccc--cc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1998 SAITAIN-KIKF-FPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1998 ~~~~~~~-~v~~-~P~~~~~~~~~~l~-~~~DW~ISR--qr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
.+.+.++ +-+| .|+..++....||+ +++|-.||| +| .||+|+|-
T Consensus 212 ~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~------------------------------ 261 (578)
T KOG0436|consen 212 PLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG------------------------------ 261 (578)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC------------------------------
Confidence 8888886 3444 67788899999999 799999999 65 89999991
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc-------ccCCcCceeeecccchhhhhHHHHHHHHH
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
.+..+++||||.-+.|++++...+. ...+||+.+|+.|+|++| ||...|++.
T Consensus 262 -------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr--FHavYWPaf 320 (578)
T KOG0436|consen 262 -------------------DDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR--FHAVYWPAF 320 (578)
T ss_pred -------------------CCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhh--hhhhhhHHH
Confidence 1356899999999999999965532 156799999999999999 999999999
Q ss_pred HhcCC-ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHH
Q psy15223 2145 ILNKS-APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIR 2222 (2492)
Q Consensus 2145 ~l~~~-~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~ 2222 (2492)
++... ++.+.|++||+++ .+|.|||||+||||+|.+++++||+|++||||+. +.++.|-+|+++.+....+. .|.
T Consensus 321 LmaAGlplP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~--~La 397 (578)
T KOG0436|consen 321 LMAAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA--HLA 397 (578)
T ss_pred HHhcCCCCccEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH--HHH
Confidence 98755 5568899999987 8999999999999999999999999999999995 67899999999998776543 344
Q ss_pred HHHHHHHhcCCC--CCCCcc---cc-cccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHh
Q psy15223 2223 NTLRFLLANTSD--FNPNIN---II-KISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 2296 (2492)
Q Consensus 2223 n~~r~~~~~~~~--~~~~~~---~~-~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~ 2296 (2492)
|++..+++++.+ ++++.. .. +.......+.-+.+.++++.+.+.+.|++|.+..|++++...++. .|-|++.
T Consensus 398 ~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~--~ntlvq~ 475 (578)
T KOG0436|consen 398 NTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA--GNTLVQQ 475 (578)
T ss_pred HHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh--hhhhhhh
Confidence 454444443322 222210 00 111123345567889999999999999999999999999998854 7889998
Q ss_pred hhhhhcccc--CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2297 LKDRLYTTK--KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2297 ~K~~l~~~~--~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
.++|..... .+.+........+.++++.+..+|.||+|-++.+++..|+-.
T Consensus 476 ~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 476 RAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred cCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 887654322 223334444556677899999999999999999999999753
|
|
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=509.45 Aligned_cols=306 Identities=26% Similarity=0.492 Sum_probs=269.4
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 530 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~ 530 (2492)
+|+|+.|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|+++ +.+|.+ ++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~---g~~~~e-------~~~~ 70 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQE-------LCDK 70 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHc---CCCHHH-------HHHH
Confidence 589999999999999999999999999999999999999999999999999999999886 788876 7888
Q ss_pred HHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEE
Q psy15223 531 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv 610 (2492)
+.+.+++++++||| ++|..++|+++.|...++++|.+|+++|++|++..+++|||.|+|+|+
T Consensus 71 ~~~~~~~~l~~LgI--~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------------- 132 (319)
T cd00814 71 YHEIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------------- 132 (319)
T ss_pred HHHHHHHHHHHcCC--cCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------
Confidence 99999999999999 567789999999999999999999999999999999999999987764
Q ss_pred EeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCc
Q psy15223 611 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 690 (2492)
Q Consensus 611 ~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 690 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCC
Q psy15223 691 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 770 (2492)
Q Consensus 691 ~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~ 770 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 771 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 850 (2492)
Q Consensus 771 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~ 850 (2492)
+++.++|||+++++ +++.++
T Consensus 133 ----------------------------------------------------e~~~~~~~ff~l~~--------~~~~l~ 152 (319)
T cd00814 133 ----------------------------------------------------EWREEEHYFFRLSK--------FQDRLL 152 (319)
T ss_pred ----------------------------------------------------EEEeeeeEEEEhHH--------HHHHHH
Confidence 12345689999988 899999
Q ss_pred HHhhcce--EecchhhHHHHHHHhc-CCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcccccc
Q psy15223 851 TAINKIK--FFPSWGKDRLKSMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 926 (2492)
Q Consensus 851 ~~i~~v~--~~P~~~~~rl~~~l~~-~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~ 926 (2492)
+.+++.. +.|+..++.+.+||++ ++|||||||. .||+|+|..
T Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~---------------------------------- 198 (319)
T cd00814 153 EWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLD---------------------------------- 198 (319)
T ss_pred HHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCC----------------------------------
Confidence 9987644 7899999999999996 9999999999 999999940
Q ss_pred CchhhcCCCccCceecCCccccccccccccchhcccCcc-------ccCCcCeeeeecccccchhhHHHHHHHHHHhc-C
Q psy15223 927 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSIILN-K 998 (2492)
Q Consensus 927 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-~ 998 (2492)
++++++|||||.+.+++..+...+ +...+|.|+++.|+|+++ ||..+++++++. +
T Consensus 199 ---------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~--fh~~~~pa~l~~~~ 261 (319)
T cd00814 199 ---------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--FHAIYWPAMLLGAG 261 (319)
T ss_pred ---------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhh--hhHHHHHHHHHhCC
Confidence 236899999999999877654321 134679999999999998 677788766543 4
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
..|++.+++|||++ .+|+|||||+||+|+|.++++.||+|++|||+++ .+..+|.+|
T Consensus 262 ~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 262 LPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 55679999999998 5699999999999999999999999999999997 566788876
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=520.92 Aligned_cols=360 Identities=26% Similarity=0.389 Sum_probs=276.1
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
|+|+.|+|||||.|||||++.++.+|+++||+||+|++|+|+.|+|+||+||+.+|+++ +++|++ ++.++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~---g~~p~~-------~~~~~ 70 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ---GIDPEE-------FCDKY 70 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT---TS-HHH-------HHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc---CCCHHH-------HHHHH
Confidence 78999999999999999999999999999999999999999999999999999999988 899988 78889
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEEE
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 1761 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~ 1761 (2492)
.+.+++.|+++||++ |++.+|+|+.|.++++++|.+|+++|+||++..+++||+.|+++|+|.+|+-.-
T Consensus 71 ~~~~~~~~~~~~I~~--D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~C--------- 139 (391)
T PF09334_consen 71 SAKFKELLEALNISY--DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTC--------- 139 (391)
T ss_dssp HHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEE---------
T ss_pred HHHHHHHHHHcCCCC--cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccc---------
Confidence 999999999999965 678999999999999999999999999999999999999999999999886110
Q ss_pred EeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcC
Q psy15223 1762 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 1841 (2492)
Q Consensus 1762 f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 1841 (2492)
..++..
T Consensus 140 ----------P~C~~~---------------------------------------------------------------- 145 (391)
T PF09334_consen 140 ----------PYCGSD---------------------------------------------------------------- 145 (391)
T ss_dssp ----------TTT--S----------------------------------------------------------------
T ss_pred ----------cCcCcc----------------------------------------------------------------
Confidence 000000
Q ss_pred ceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCC
Q psy15223 1842 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 1921 (2492)
Q Consensus 1842 ~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G 1921 (2492)
+..|
T Consensus 146 ----------------------------------------------------------------------------~a~g 149 (391)
T PF09334_consen 146 ----------------------------------------------------------------------------KARG 149 (391)
T ss_dssp ----------------------------------------------------------------------------SCTT
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0000
Q ss_pred ccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 1922 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 2001 (2492)
Q Consensus 1922 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~ 2001 (2492)
..++++|. ..+.-+-.-|.|..||.+++++.++|||+++++ +++.+.+
T Consensus 150 ~~Ce~cG~------------------------~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~--------~~~~L~~ 197 (391)
T PF09334_consen 150 DQCENCGR------------------------PLEPEELINPVCKICGSPPEVREEENYFFKLSK--------FRDQLRE 197 (391)
T ss_dssp TEETTTSS------------------------BEECCCSECEEETTTS-B-EEEEEEEEEE-GGG--------GHHHHHH
T ss_pred CcccCCCC------------------------CcccccccCCccccccccCccccceEEEEehHH--------hHHHHHH
Confidence 00000100 000111123789999999999999999999999 8889999
Q ss_pred hhhcce-EecccchhHHHHhhhC-CCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchh
Q psy15223 2002 AINKIK-FFPSWGKDRLKSMILN-RPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 2079 (2492)
Q Consensus 2002 ~~~~v~-~~P~~~~~~~~~~l~~-~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~ 2079 (2492)
.+++.. +.|+..++.+.+||+. ++||||||...||+|+|-
T Consensus 198 ~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~-------------------------------------- 239 (391)
T PF09334_consen 198 WLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG-------------------------------------- 239 (391)
T ss_dssp HHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETT--------------------------------------
T ss_pred HHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeec--------------------------------------
Confidence 887543 4667778888899995 999999999999999991
Q ss_pred hhcCCCccCceecccccccccccCcchhhhccCCc-------cccCCc-----CceeeecccchhhhhHHHHHHHHHHhc
Q psy15223 2080 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIF-----PADLYLEGSDQHRGWFHSSLLTSIILN 2147 (2492)
Q Consensus 2080 ~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~-----P~Dl~~~G~D~~r~wf~~~l~~~~~l~ 2147 (2492)
.+..|++||||..+.|++.++... .+..+| +--+++.|+|+++ ||..+++++++.
T Consensus 240 -----------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~~pa~l~a 306 (391)
T PF09334_consen 240 -----------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIR--FHAIYWPAMLLA 306 (391)
T ss_dssp -----------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHH--HHHTHHHHHHHH
T ss_pred -----------cCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhH--HHHHHhHHHHhc
Confidence 134689999999999988875432 112234 1238999999997 899999998877
Q ss_pred CCc-cccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH
Q psy15223 2148 KSA-PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2148 ~~~-pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~ 2216 (2492)
... +++++++|||++ .+|+|||||+||+|+|.+++++||+|++||||++ ++..+|.+|+++.+.+..+
T Consensus 307 ~~~~lP~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp CTB---SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred ccCCCCCEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 544 348999999988 7999999999999999999999999999999997 6789999999998866443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=520.60 Aligned_cols=360 Identities=27% Similarity=0.406 Sum_probs=276.9
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
|+|+.|+|||||.|||||+..++.+|+++||+||+|++|.|+.|+|+||+||+.+|+++ +++|++ ++.++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~---g~~p~~-------~~~~~ 70 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ---GIDPEE-------FCDKY 70 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT---TS-HHH-------HHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc---CCCHHH-------HHHHH
Confidence 78999999999999999999999999999999999999999999999999999999997 889998 88889
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEEE
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv~ 611 (2492)
.+.+++.|+++||++ |++.+|.|+.|.+.++++|.+|+++|+||++..+++||+.|+++|+|.+|+.. .
T Consensus 71 ~~~~~~~~~~~~I~~--D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~---C------ 139 (391)
T PF09334_consen 71 SAKFKELLEALNISY--DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGT---C------ 139 (391)
T ss_dssp HHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCE---E------
T ss_pred HHHHHHHHHHcCCCC--cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeecc---c------
Confidence 999999999999955 67999999999999999999999999999999999999999999999998621 0
Q ss_pred eecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcC
Q psy15223 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 691 (2492)
Q Consensus 612 f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 691 (2492)
|. .+
T Consensus 140 --------------------------------------------P~-----------------------------C~--- 143 (391)
T PF09334_consen 140 --------------------------------------------PY-----------------------------CG--- 143 (391)
T ss_dssp --------------------------------------------TT-----------------------------T----
T ss_pred --------------------------------------------cC-----------------------------cC---
Confidence 00 00
Q ss_pred cEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCCC
Q psy15223 692 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG 771 (2492)
Q Consensus 692 ~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~G 771 (2492)
. ..+.|. .|...|.
T Consensus 144 --------------------~-----------------------------~~a~g~----~Ce~cG~------------- 157 (391)
T PF09334_consen 144 --------------------S-----------------------------DKARGD----QCENCGR------------- 157 (391)
T ss_dssp --------------------------------------------------SSCTTT----EETTTSS-------------
T ss_pred --------------------c-----------------------------cccCCC----cccCCCC-------------
Confidence 0 000000 0000010
Q ss_pred cccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHH
Q psy15223 772 NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAIT 851 (2492)
Q Consensus 772 ~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~ 851 (2492)
..+ ..+-.-|.|-.||+++++|.++|||+++++ +++.+.+
T Consensus 158 -~~~-------------------------------~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~--------~~~~L~~ 197 (391)
T PF09334_consen 158 -PLE-------------------------------PEELINPVCKICGSPPEVREEENYFFKLSK--------FRDQLRE 197 (391)
T ss_dssp -BEE-------------------------------CCCSECEEETTTS-B-EEEEEEEEEE-GGG--------GHHHHHH
T ss_pred -Ccc-------------------------------cccccCCccccccccCccccceEEEEehHH--------hHHHHHH
Confidence 000 001112789999999999999999999998 8899999
Q ss_pred Hhhcce-EecchhhHHHHHHHhc-CCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCch
Q psy15223 852 AINKIK-FFPSWGKDRLKSMILN-RPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 929 (2492)
Q Consensus 852 ~i~~v~-~~P~~~~~rl~~~l~~-~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~ 929 (2492)
.+++.. +.|+..++.+.+||++ ++||||||.-.||+|+|-
T Consensus 198 ~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~-------------------------------------- 239 (391)
T PF09334_consen 198 WLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG-------------------------------------- 239 (391)
T ss_dssp HHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETT--------------------------------------
T ss_pred HHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeec--------------------------------------
Confidence 987643 4667778888899995 999999999999999991
Q ss_pred hhcCCCccCceecCCccccccccccccchhcccCc-------cccCCc-----CeeeeecccccchhhHHHHHHHHHHhc
Q psy15223 930 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------KKQLIF-----PADLYLEGSDQHRGWFHSSLLTSIILN 997 (2492)
Q Consensus 930 ~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------~~~~~~-----p~Dl~~~G~D~~rgwf~s~l~~~~~~~ 997 (2492)
.+..|++||||..+.|++.++... .+..+| +.-+++.|+|+++ ||..+++++++.
T Consensus 240 -----------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~--fH~i~~pa~l~a 306 (391)
T PF09334_consen 240 -----------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIR--FHAIYWPAMLLA 306 (391)
T ss_dssp -----------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHH--HHHTHHHHHHHH
T ss_pred -----------cCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhH--HHHHHhHHHHhc
Confidence 134689999999999988876543 113445 2239999999997 999999998877
Q ss_pred CCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHH
Q psy15223 998 KSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 1066 (2492)
Q Consensus 998 ~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~ 1066 (2492)
...| ++++++|||++ .+|+|||||+||+|+|.+++++||+|++||||++ .+..+|.+|+++.+.+..+
T Consensus 307 ~~~~lP~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp CTB---SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred ccCCCCCEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 5544 49999999998 7999999999999999999999999999999997 5678999999988866543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=504.62 Aligned_cols=306 Identities=26% Similarity=0.490 Sum_probs=268.5
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
+|+|+.|||||||.|||||+++++++|+++||+||+|++|.|++|||+||+||+.+|+++ +++|.+ ++.+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~---g~~~~e-------~~~~ 70 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE---GVTPQE-------LCDK 70 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHc---CCCHHH-------HHHH
Confidence 589999999999999999999999999999999999999999999999999999999886 788876 7888
Q ss_pred HHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEE
Q psy15223 1681 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 1760 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv 1760 (2492)
+++.+++++++||+. +|..+.|+++.|...++++|.+|+++|++|++..+++|||.|+|+|+
T Consensus 71 ~~~~~~~~l~~LgI~--~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------------- 132 (319)
T cd00814 71 YHEIFKDLFKWLNIS--FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------------- 132 (319)
T ss_pred HHHHHHHHHHHcCCc--CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------
Confidence 999999999999994 56788999999999999999999999999999999999999988765
Q ss_pred EEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCc
Q psy15223 1761 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 1840 (2492)
Q Consensus 1761 ~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 1840 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCC
Q psy15223 1841 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 1920 (2492)
Q Consensus 1841 ~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~ 1920 (2492)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 1921 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 2000 (2492)
Q Consensus 1921 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~ 2000 (2492)
+++.++|||+++++ +++.++
T Consensus 133 ----------------------------------------------------e~~~~~~~ff~l~~--------~~~~l~ 152 (319)
T cd00814 133 ----------------------------------------------------EWREEEHYFFRLSK--------FQDRLL 152 (319)
T ss_pred ----------------------------------------------------EEEeeeeEEEEhHH--------HHHHHH
Confidence 12334689999988 889999
Q ss_pred Hhhhcce--EecccchhHHHHhhhC-CCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccccccc
Q psy15223 2001 TAINKIK--FFPSWGKDRLKSMILN-RPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNL 2076 (2492)
Q Consensus 2001 ~~~~~v~--~~P~~~~~~~~~~l~~-~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~ 2076 (2492)
+.+++.. +.|+..++.+.+||++ ++|||||||. .||+|+|..
T Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~---------------------------------- 198 (319)
T cd00814 153 EWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLD---------------------------------- 198 (319)
T ss_pred HHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCC----------------------------------
Confidence 8887543 7899999999999996 9999999999 999999930
Q ss_pred chhhhcCCCccCceecccccccccccCcchhhhccCCcc-------ccCCcCceeeecccchhhhhHHHHHHHHHHhc-C
Q psy15223 2077 DIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK-------KQLIFPADLYLEGSDQHRGWFHSSLLTSIILN-K 2148 (2492)
Q Consensus 2077 ~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~-------~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~-~ 2148 (2492)
++++++||||+.+.|++......+ +...+|.|+++.|+|+++ ||..+++++++. +
T Consensus 199 ---------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~--fh~~~~pa~l~~~~ 261 (319)
T cd00814 199 ---------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIR--FHAIYWPAMLLGAG 261 (319)
T ss_pred ---------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhh--hhHHHHHHHHHhCC
Confidence 236899999999999887643321 123479999999999998 667777766553 4
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccc
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~f 2206 (2492)
..|++.+++|||++ .+|+|||||+||+|+|.++++.||+|++|||+++ .+..+|.+|
T Consensus 262 ~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 262 LPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 56689999999998 5699999999999999999999999999999996 577888876
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=502.22 Aligned_cols=295 Identities=27% Similarity=0.509 Sum_probs=256.1
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
||+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. ++++ ++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~---g~~~-------~e~~~~ 70 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI---GRDP-------EDWTEY 70 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc---CCCH-------HHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999876 5654 458999
Q ss_pred HHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEEE
Q psy15223 1681 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 1760 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv 1760 (2492)
+.+.+++++++||+++||++.+.|++|.|.+.++++|.+|+++|+||++..+|+|| +
T Consensus 71 ~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~-----------~------------ 127 (314)
T cd00812 71 NIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC-----------K------------ 127 (314)
T ss_pred HHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------C------------
Confidence 99999999999999999999999999999999999999999999999999999999 0
Q ss_pred EEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCc
Q psy15223 1761 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 1840 (2492)
Q Consensus 1761 ~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 1840 (2492)
T Consensus 128 -------------------------------------------------------------------------------- 127 (314)
T cd00812 128 -------------------------------------------------------------------------------- 127 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCC
Q psy15223 1841 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 1920 (2492)
Q Consensus 1841 ~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~ 1920 (2492)
T Consensus 128 -------------------------------------------------------------------------------- 127 (314)
T cd00812 128 -------------------------------------------------------------------------------- 127 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 1921 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 2000 (2492)
Q Consensus 1921 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~ 2000 (2492)
.++|||+++++ ..+++++.
T Consensus 128 -------------------------------------------------------~~~~~f~~l~~------~~~~~~l~ 146 (314)
T cd00812 128 -------------------------------------------------------LLDQWFLKYSE------TEWKEKLL 146 (314)
T ss_pred -------------------------------------------------------ccceEEEEcCc------HHHHHHHH
Confidence 02479999943 12999999
Q ss_pred HhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhh
Q psy15223 2001 TAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE 2080 (2492)
Q Consensus 2001 ~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~ 2080 (2492)
+.++++++.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 147 ~~l~~~~~~p~~~~~~~~~~l~------isR~~~wGipvP~--------------------------------------- 181 (314)
T cd00812 147 KDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPIPW--------------------------------------- 181 (314)
T ss_pred HHHHhcCcCCHHHHHHHHHHhe------eeeecCCcCCcCc---------------------------------------
Confidence 9999888899999999999996 9999999999994
Q ss_pred hcCCCccCceecccccccccccCcchhhhccC--------------CccccCCcCceeeecccchhhhh-HHHHHHHHHH
Q psy15223 2081 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG--------------SHKKQLIFPADLYLEGSDQHRGW-FHSSLLTSII 2145 (2492)
Q Consensus 2081 ~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~--------------~~~~~~~~P~Dl~~~G~D~~r~w-f~~~l~~~~~ 2145 (2492)
++++||||||.+++..++.. ..++++|||+|+++.|+||+++| ++...+.+++
T Consensus 182 ------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l 249 (314)
T cd00812 182 ------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKAL 249 (314)
T ss_pred ------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHH
Confidence 24789999999865544421 11235789999999999999988 4444455555
Q ss_pred hcCC----ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCCCcccccH
Q psy15223 2146 LNKS----APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISN 2208 (2492)
Q Consensus 2146 l~~~----~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~~d~~fs~ 2208 (2492)
.... .+++++++||||+ .+|+|||||+||+|+|+|++++||+|++|||+++... .|.+|++
T Consensus 250 ~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 250 FDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred cCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 4333 5788999999998 6899999999999999999999999999999997544 8888763
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=501.07 Aligned_cols=294 Identities=27% Similarity=0.520 Sum_probs=255.3
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 530 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~ 530 (2492)
||+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++. +.++ ++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~---g~~~-------~e~~~~ 70 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI---GRDP-------EDWTEY 70 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc---CCCH-------HHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999875 5554 559999
Q ss_pred HHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEEE
Q psy15223 531 KIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~yv 610 (2492)
+.+.+++++++||+++||++++.|++|.|.+.++++|.+|+++|+||++..+|+||
T Consensus 71 ~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------------ 126 (314)
T cd00812 71 NIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------------ 126 (314)
T ss_pred HHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------------
Confidence 99999999999999999999999999999999999999999999999999999988
Q ss_pred EeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCc
Q psy15223 611 GFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK 690 (2492)
Q Consensus 611 ~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 690 (2492)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCCC
Q psy15223 691 GNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDD 770 (2492)
Q Consensus 691 ~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~~ 770 (2492)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHH
Q psy15223 771 GNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 850 (2492)
Q Consensus 771 G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~ 850 (2492)
+.++|||+++++ ..+++++.
T Consensus 127 ------------------------------------------------------~~~~~~f~~l~~------~~~~~~l~ 146 (314)
T cd00812 127 ------------------------------------------------------KLLDQWFLKYSE------TEWKEKLL 146 (314)
T ss_pred ------------------------------------------------------CccceEEEEcCc------HHHHHHHH
Confidence 012489999943 22999999
Q ss_pred HHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccCchh
Q psy15223 851 TAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKE 930 (2492)
Q Consensus 851 ~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~ 930 (2492)
+.+++..+.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 147 ~~l~~~~~~p~~~~~~~~~~l~------isR~~~wGipvP~--------------------------------------- 181 (314)
T cd00812 147 KDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPIPW--------------------------------------- 181 (314)
T ss_pred HHHHhcCcCCHHHHHHHHHHhe------eeeecCCcCCcCc---------------------------------------
Confidence 9999888899999999999996 9999999999994
Q ss_pred hcCCCccCceecCCccccccccccccchhccc--------------CccccCCcCeeeeecccccchhh-HHHHHHHHHH
Q psy15223 931 FLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG--------------SHKKQLIFPADLYLEGSDQHRGW-FHSSLLTSII 995 (2492)
Q Consensus 931 ~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~--------------~~~~~~~~p~Dl~~~G~D~~rgw-f~s~l~~~~~ 995 (2492)
++++||||||.+++..++.. ..++.+|||+|+|+.|+||+++| ++...+.+++
T Consensus 182 ------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l 249 (314)
T cd00812 182 ------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKAL 249 (314)
T ss_pred ------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHH
Confidence 24789999999754333311 11236789999999999999988 4444455555
Q ss_pred hcCC----CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccC
Q psy15223 996 LNKS----APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSIS 1057 (2492)
Q Consensus 996 ~~~~----~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs 1057 (2492)
.... .+++++++||||+ .+|+|||||+||+|+|+|++++||+|++|||+++... .|.+|+
T Consensus 250 ~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~ 313 (314)
T cd00812 250 FDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFD 313 (314)
T ss_pred cCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCC
Confidence 4433 5778999999998 6899999999999999999999999999999997655 888776
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG1385 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=458.74 Aligned_cols=239 Identities=39% Similarity=0.630 Sum_probs=212.8
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCcee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTI 279 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i 279 (2492)
|+|+|+|++.++..+..+.|+++++||+ +|||+++||.|.++||+|+.|.|+|++++++ ..+.+++....+++++..|
T Consensus 1 ~~~~~~~v~~~~~~~~~~~l~~~~~~Hl~~VlRl~~gd~l~l~~g~g~~~~a~i~~~~kk~~~~~i~~~~~~~~e~~~~i 80 (246)
T COG1385 1 MRMPRLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEITKIGKKEALLKIVEQLEPNPELPLKI 80 (246)
T ss_pred CCceeEeecccccCCCEEEECchhhhhHHheeecCCCCEEEEEeCCCcEEEEEEeecCCCceEEEEEeecccCCCCCceE
Confidence 8999999999999999999999999999 8999999999999999999999999998665 6778888888888999999
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
+|+|+++|+++||++|||||||||+.|+|+.|+||+++++.++.. |++||++|++||||||||+.+|+|..+.+|.+++
T Consensus 81 ~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~-kler~~ki~ieAaEQs~R~~vP~I~~~~~~~~~l 159 (246)
T COG1385 81 TLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAA-KLERWQKIAIEAAEQSGRNVVPEIKPPESLKELL 159 (246)
T ss_pred EEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchh-HHHHHHHHHHHHHHhcCCCcCCeeechhhHHHHH
Confidence 999999999999999999999999999999999999999988888 9999999999999999999999999999999999
Q ss_pred hhccccc--EEEeccCCccccccccc--CCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheee
Q psy15223 360 ISKISCA--RILLSPRGRKKLSCWAN--NQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 435 (2492)
Q Consensus 360 ~~~~~~~--~~l~~~~~~~~~~~~~~--~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~ 435 (2492)
+...+.+ .+.+++........... ....+++.++||||||||++|++.+.++||.+|+|||||||||||+++|++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEGGfs~~Ei~~l~~~g~~~v~LGprILRtETAal~ala~ 239 (246)
T COG1385 160 KEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTETAALAALAA 239 (246)
T ss_pred HhcccchhhhheeccccccccccchhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCeEeccCCceehhhHHHHHHHHH
Confidence 8765333 44455544433222211 1234689999999999999999999999999999999999999999999998
Q ss_pred eccccc
Q psy15223 436 LNGVWG 441 (2492)
Q Consensus 436 v~~ly~ 441 (2492)
++..++
T Consensus 240 i~~~~~ 245 (246)
T COG1385 240 LQALLG 245 (246)
T ss_pred HHHHhc
Confidence 886654
|
|
| >TIGR00046 RNA methyltransferase, RsmE family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=439.79 Aligned_cols=236 Identities=35% Similarity=0.503 Sum_probs=197.9
Q ss_pred ccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceee
Q psy15223 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTIT 280 (2492)
Q Consensus 203 ~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~ 280 (2492)
+|++||.+.... +..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ ..+++.+....+.+++++|+
T Consensus 1 ~m~~~~~~~~~~-~~~i~l~~~~~~Hl~~VlR~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i~ 79 (240)
T TIGR00046 1 RMRIVYHPEQLE-EATISLTEEEAHHLVRVLRLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKIH 79 (240)
T ss_pred CCcEEEeCcccc-CCeEEEChHHHhHHHHcccCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEEE
Confidence 377888775544 44599999999999 9999999999999999999999999998765 45666655555556677899
Q ss_pred EEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 281 LVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 281 L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
|+||+||+++|||+|||||||||++|+|+.|+||+++++.+ ..+|.+||++|++||||||+|+++|+|.++.+|+++++
T Consensus 80 l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~-~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~~l~~~l~ 158 (240)
T TIGR00046 80 LAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKCA 158 (240)
T ss_pred EEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCch-HHHHHHHHHHHHHHHHHhcCCCCCCEECCcCCHHHHHh
Confidence 99999999999999999999999999999999999998766 67899999999999999999999999999999999987
Q ss_pred hcccccE-EEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccc
Q psy15223 361 SKISCAR-ILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGV 439 (2492)
Q Consensus 361 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~l 439 (2492)
...+... +++++++......+. . ..+++.++||||||||++|++.+.++||.+||||+||||+|||+++|+++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~v~~~IGPEGGfs~~Ei~~~~~~gf~~vsLG~rILR~ETA~i~als~~~~~ 236 (240)
T TIGR00046 159 EAYEEALKLNFHPEASPLSANLP-I-PAGNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYALSILQAL 236 (240)
T ss_pred hCcCCCeEEEECCcccchhhhhc-c-CCCcEEEEECCCCCCCHHHHHHHHHCCCEEEccCCcchhhccHHHHHHHHHHHH
Confidence 5433233 444444332112221 1 234699999999999999999999999999999999999999999999988866
Q ss_pred ccc
Q psy15223 440 WGE 442 (2492)
Q Consensus 440 y~~ 442 (2492)
++.
T Consensus 237 ~~~ 239 (240)
T TIGR00046 237 LED 239 (240)
T ss_pred hcC
Confidence 543
|
Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. |
| >PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=430.22 Aligned_cols=220 Identities=39% Similarity=0.578 Sum_probs=170.4
Q ss_pred EEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceeeEEEecCCchhHHHHHH
Q psy15223 219 LYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTITLVQALPENRKFDLIIE 296 (2492)
Q Consensus 219 i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~L~~al~K~~~~d~ii~ 296 (2492)
+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ ..+++.+....+.+++.+++|+||+||+++|||+||
T Consensus 1 V~L~~~~~~Hl~~VlR~k~Gd~i~v~dg~g~~~~a~i~~i~~~~~~~~i~~~~~~~~~~~~~i~L~~al~K~~~~d~il~ 80 (225)
T PF04452_consen 1 VELDGEEAHHLVKVLRLKEGDSIEVFDGDGGEYRAEITEISKKSATLRILEELEIPPEPPPEITLAQALPKGDRMDWILQ 80 (225)
T ss_dssp EEEEHHHHHHHHTTST--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--STTHHHHHHH
T ss_pred CEecHHHHHHHHHhcCCCCCCEEEEEECCCCEEEEEEEECcCcEEEEEEeeeccCCCCCcceEEEEEEEEcCccHHHHHH
Confidence 57899999999 9999999999999999999999999999776 557788777787887878999999999999999999
Q ss_pred HHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhhcccccEEEeccCCcc
Q psy15223 297 KSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRK 376 (2492)
Q Consensus 297 katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~~~~~~~~l~~~~~~~ 376 (2492)
|||||||++|+|+.|+||+++++.++..+|.+||++|++||||||+|+++|+|.++.+|++++........+++++++..
T Consensus 81 katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 160 (225)
T PF04452_consen 81 KATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPISLKELLEDIPDEDLLILDEDEEP 160 (225)
T ss_dssp HHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHSSECSEEEE-TTTTC
T ss_pred HHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeeccccHHHHhhccccCCEEEEcccccc
Confidence 99999999999999999999988888899999999999999999999999999999999999987666556777776554
Q ss_pred cccccccCCCC---CceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecc
Q psy15223 377 KLSCWANNQSP---QEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438 (2492)
Q Consensus 377 ~~~~~~~~~~~---~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ 438 (2492)
.+..+...... .++.++||||||||++|++.+.++||++||||+||||+|||++++++++++
T Consensus 161 ~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~~~~~g~~~vsLG~~ILR~ETAai~als~l~y 225 (225)
T PF04452_consen 161 SLSSLSEILNSEKSFSIAIIIGPEGGFSEEEIEFLKEAGFQPVSLGPRILRTETAAIAALSILQY 225 (225)
T ss_dssp BGGGCSHTTSCHHC-EEEEEE--TT---HHHHHHHHHCTEEEEB-SSS---HHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCEEEEcCCCEEehHHHHHHHHHHhhC
Confidence 33322221111 189999999999999999999999999999999999999999999998763
|
The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A .... |
| >PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=421.81 Aligned_cols=229 Identities=42% Similarity=0.651 Sum_probs=195.1
Q ss_pred cccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceeeE
Q psy15223 204 MLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTITL 281 (2492)
Q Consensus 204 M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~L 281 (2492)
|+|||++ ...+..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|+.++++ ..+.+.+....+.+++++++|
T Consensus 1 m~~~f~~--~~~~~~~~l~~~~~~Hl~~VlR~~~Gd~i~v~~g~g~~~~~~i~~i~~~~~~~~i~~~~~~~~~~~~~l~l 78 (234)
T PRK11713 1 MPRLFVL--LAAGETLILDGEEAHHLVRVLRLKEGDELRLFDGDGGEYLAEITEIGKKEVELEILEKLELEPEPPLRLTL 78 (234)
T ss_pred CcEEEEe--cCCCCEEEEChHHHhHHHhhccCCCCCEEEEEeCCCCEEEEEEEEecCcEEEEEEEecccCCCCCCCeEEE
Confidence 7899998 55677899999999999 9999999999999999999999999998765 456666655555677789999
Q ss_pred EEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhh
Q psy15223 282 VQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLIS 361 (2492)
Q Consensus 282 ~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~ 361 (2492)
++|+||+++|||+|||||||||++|+|+.|+||+.++..++..+|.+||++|+++|||||+|+++|+|.++.+|.++++.
T Consensus 79 ~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~~~~~~l~~ 158 (234)
T PRK11713 79 AQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKEFLEE 158 (234)
T ss_pred EEeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcCCHHHHHhh
Confidence 99999999999999999999999999999999999987777778999999999999999999999999999999999875
Q ss_pred cccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccccc
Q psy15223 362 KISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWG 441 (2492)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ly~ 441 (2492)
....+. . .... ..+. ....+++.++||||||||++|++.|.++||.+||||+||||+|||+++++++++..++
T Consensus 159 ~~~~~~---~-~~~~--~~l~-~~~~~~i~viIGPEGGfs~~Ei~~l~~~g~~~vsLG~~ILR~ETA~i~als~~~~~~~ 231 (234)
T PRK11713 159 LLPADL---K-AGLK--LVLH-PEAGGKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAALAALQALLG 231 (234)
T ss_pred cccccc---c-hhhh--hhcC-cCCCCeEEEEECCCCCCCHHHHHHHHHCCCEEeccCCCchhhhhHHHHHHHHHHHHhc
Confidence 432211 1 1101 0011 1122469999999999999999999999999999999999999999999998876544
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=362.28 Aligned_cols=493 Identities=19% Similarity=0.268 Sum_probs=372.6
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNK 523 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~ 523 (2492)
+..++..-+++..-||+|..+|+|+... +..+|+++||.+.+|++.+|+.|+|..|..+|.+|.+. +++|.+
T Consensus 9 p~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkalee---g~tP~e---- 81 (567)
T KOG1247|consen 9 PAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEE---GLTPQE---- 81 (567)
T ss_pred cCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHc---cCCHHH----
Confidence 3445567789999999999999999886 66699999999999999999999999999999999887 899999
Q ss_pred HHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccce
Q psy15223 524 ARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKK 603 (2492)
Q Consensus 524 ~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~ 603 (2492)
.++++....+....=++| |+|..-+|+.+..-...|.+|.+|+++|++-...-.+.||..|++.||+..|+=+
T Consensus 82 ---lcdKyh~ihk~vy~Wf~I--dfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~-- 154 (567)
T KOG1247|consen 82 ---LCDKYHGIHKVVYDWFKI--DFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGK-- 154 (567)
T ss_pred ---HHHhcchhHHHHHHhhcc--cccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhcc--
Confidence 556677788888877888 6677778999999999999999999999999999999999999999999887610
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.
T Consensus 155 --------c----------------------------------------------------------------------- 155 (567)
T KOG1247|consen 155 --------C----------------------------------------------------------------------- 155 (567)
T ss_pred --------C-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
|+. |-+|-
T Consensus 156 --------------------------p~C---------------------------------~yd~A------------- 163 (567)
T KOG1247|consen 156 --------------------------PFC---------------------------------GYDDA------------- 163 (567)
T ss_pred --------------------------CCC---------------------------------CCccc-------------
Confidence 000 00000
Q ss_pred ccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhH
Q psy15223 764 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKK 843 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~ 843 (2492)
.|-..+ ..|.++.. .+..-|.|--|..--+++.+.+-|+++++
T Consensus 164 ------RGDqcd----------------------~cG~l~N~--~el~~pkc~ic~~~p~~~~t~h~Fl~L~k------- 206 (567)
T KOG1247|consen 164 ------RGDQCD----------------------KCGKLVNA--AELKIPKCKICQAGPVVRQTQHLFLSLDK------- 206 (567)
T ss_pred ------cchhhh----------------------hhhhhcCH--HHhcCcchheeccCCeeeeeeEEEEEhHH-------
Confidence 000000 01111110 01112567777777778999999999999
Q ss_pred HHHHHHHHHhhcceE---ecchhhHHHHHHHh-cCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 844 SLRESAITAINKIKF---FPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 844 ~~~~~~~~~i~~v~~---~P~~~~~rl~~~l~-~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
++.++-+.+++.-. ...++++-.++||. ++...||||...||+|+|.-
T Consensus 207 -l~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle--------------------------- 258 (567)
T KOG1247|consen 207 -LEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLE--------------------------- 258 (567)
T ss_pred -hHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChh---------------------------
Confidence 88888777765321 23456778899999 79999999999999999950
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhcccC-ccccCCcC----eee-eecccccchhhHHHHHHHH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS-HKKQLIFP----ADL-YLEGSDQHRGWFHSSLLTS 993 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~-~~~~~~~p----~Dl-~~~G~D~~rgwf~s~l~~~ 993 (2492)
.-...|++||||+-+.+.+.+..- .+++.||- +++ .+.|+|.+. ||+.++++
T Consensus 259 --------------------~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVp--FHtviFP~ 316 (567)
T KOG1247|consen 259 --------------------KFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVP--FHTVIFPC 316 (567)
T ss_pred --------------------hhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCc--ceeeecch
Confidence 012468999999999998877432 23356662 343 489999998 89999999
Q ss_pred HHhcCCCCc---eEEEEeeEEEcCCCccccccCCCccCcchhhh-hcChhhHHHHhhcc-CcccccccCHHHHHHH--HH
Q psy15223 994 IILNKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVAST-DYSKDLSISNEILNRV--VE 1066 (2492)
Q Consensus 994 ~~~~~~~p~---k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~-~yGaD~lRl~l~s~-~~~~d~~fs~~~l~~~--~~ 1066 (2492)
..+.....| +++.+.-. ++-+..|+|||+|..|-.+++-+ ..++|+.||||++. +.++|..||++.+... ++
T Consensus 317 s~lgt~en~t~v~~l~aTeY-LnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nse 395 (567)
T KOG1247|consen 317 SQLGTEENYTVVHHLSATEY-LNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSE 395 (567)
T ss_pred hhhcCCCCchhheeechhhh-hccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHH
Confidence 999877766 33433333 45778899999999999988876 48999999999985 4567999999987543 46
Q ss_pred HHHHHHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHH
Q psy15223 1067 TYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1067 ~~~kl~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~ 1145 (2492)
.++.|-|++..++..+.. |+. .++...+..-|+-++..++++..+..++||.-..+++++.+|+.. ...|.|++
T Consensus 396 Ll~NLGNFvNR~l~fv~~~~~g---~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqylQ 470 (567)
T KOG1247|consen 396 LLNNLGNFVNRVLKFVAAKYNG---VVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYLQ 470 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC---cccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHh
Confidence 777777776655543321 111 122224444588899999999999999999999999999999998 45999999
Q ss_pred hhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1146 ILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1146 ~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
..++. .+...+..+...+..+-..++..+..+|+|+||.++.+|..+++-
T Consensus 471 ~~~~~-k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 471 ENTDN-KLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred ccccc-chhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 87632 222222223334455667788889999999999999999998864
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=394.05 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=143.0
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
-|.|+|.+|.|++++|+.++++++.++++ .||+++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++++
T Consensus 219 ~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~ 297 (463)
T PRK00260 219 ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAH 297 (463)
T ss_pred CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCC
Confidence 47899999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++|+++.+.++.+.+++++|+++++.. ...|+|++++++.+.+.+.++|+ +|++++|+
T Consensus 298 ~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-----------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al 360 (463)
T PRK00260 298 YRSPLNFSEEALEQAKKALERLYNALAETAL-----------------GEDDEALLAELEEFKERFIEAMDDDFNTPEAL 360 (463)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHhhh-----------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999999999999998741 13567889999999999999995 99999999
Q ss_pred HHHHHHHHhhhhhhHHH
Q psy15223 2279 SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yle 2295 (2492)
..|++|+. + .|.|++
T Consensus 361 ~~l~~lv~-~-~n~~~~ 375 (463)
T PRK00260 361 AVLFELAR-E-INRALE 375 (463)
T ss_pred HHHHHHHH-H-HHHHhh
Confidence 99999983 3 466664
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=359.14 Aligned_cols=488 Identities=19% Similarity=0.255 Sum_probs=370.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 1675 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~ 1675 (2492)
.++..-+|+..-||+|..+|+|+..+ ...+||++||.+.+|++.+|+.|+|..|..+|.+|.+. +.+|.++
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkalee---g~tP~el----- 82 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEE---GLTPQEL----- 82 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHc---cCCHHHH-----
Confidence 35567889999999999999999887 55699999999999999999999999999999999877 8999984
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeec
Q psy15223 1676 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755 (2492)
Q Consensus 1676 ~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~ 1755 (2492)
++++....+....-++| |+|..=+|+.+..-+.+|.+|.+|+++|+.....-.+.||..|++.|||..|+=+
T Consensus 83 --cdKyh~ihk~vy~Wf~I--dfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~---- 154 (567)
T KOG1247|consen 83 --CDKYHGIHKVVYDWFKI--DFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGK---- 154 (567)
T ss_pred --HHhcchhHHHHHHhhcc--cccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhcc----
Confidence 55566677777778888 5566778999999999999999999999999999999999999999999887610
Q ss_pred ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHH
Q psy15223 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 1835 (2492)
Q Consensus 1756 ~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 1835 (2492)
+
T Consensus 155 ------------------c------------------------------------------------------------- 155 (567)
T KOG1247|consen 155 ------------------C------------------------------------------------------------- 155 (567)
T ss_pred ------------------C-------------------------------------------------------------
Confidence 0
Q ss_pred HcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccc
Q psy15223 1836 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 1915 (2492)
Q Consensus 1836 ~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~ 1915 (2492)
|+. |-+|
T Consensus 156 ------------------------p~C---------------------------------~yd~---------------- 162 (567)
T KOG1247|consen 156 ------------------------PFC---------------------------------GYDD---------------- 162 (567)
T ss_pred ------------------------CCC---------------------------------CCcc----------------
Confidence 000 0000
Q ss_pred ccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1916 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1916 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
..|..++.+|. ++. ..+..-|.|.-|..-.+++.+.+-|+++++ +
T Consensus 163 ---ARGDqcd~cG~----------------------l~N--~~el~~pkc~ic~~~p~~~~t~h~Fl~L~k--------l 207 (567)
T KOG1247|consen 163 ---ARGDQCDKCGK----------------------LVN--AAELKIPKCKICQAGPVVRQTQHLFLSLDK--------L 207 (567)
T ss_pred ---ccchhhhhhhh----------------------hcC--HHHhcCcchheeccCCeeeeeeEEEEEhHH--------h
Confidence 00111111110 000 011123667778887889999999999999 8
Q ss_pred HHHHHHhhhcce---EecccchhHHHHhhh-CCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1996 RESAITAINKIK---FFPSWGKDRLKSMIL-NRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1996 k~~~~~~~~~v~---~~P~~~~~~~~~~l~-~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
+.++-+++++-- -....+++-.+.||. +++..||+|..-||+|+|.-
T Consensus 208 ~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle----------------------------- 258 (567)
T KOG1247|consen 208 EPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLE----------------------------- 258 (567)
T ss_pred HHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChh-----------------------------
Confidence 888888876422 134456778899999 79999999999999999950
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCC-ccccCCc--C--cee-eecccchhhhhHHHHHHHHHH
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS-HKKQLIF--P--ADL-YLEGSDQHRGWFHSSLLTSII 2145 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~-~~~~~~~--P--~Dl-~~~G~D~~r~wf~~~l~~~~~ 2145 (2492)
+-+..|++||||+-+.|++....- .+++.|| | +++ .+.|+|.+. ||+.++++..
T Consensus 259 ------------------~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVp--FHtviFP~s~ 318 (567)
T KOG1247|consen 259 ------------------KFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVP--FHTVIFPCSQ 318 (567)
T ss_pred ------------------hhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCc--ceeeecchhh
Confidence 012469999999999999887432 2234554 3 343 589999998 8999999999
Q ss_pred hcCCcccc---EEEEeeeEEcCCCceeeeccCCccCcchhhh-ccChhHHHHHHhc-cCCCCcccccHHHHHHH--HHHH
Q psy15223 2146 LNKSAPYK---ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVAS-TDYSKDLSISNEILNRV--VETY 2218 (2492)
Q Consensus 2146 l~~~~pfk---~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~--~~~~ 2218 (2492)
+...+.|. ++.+. -.|+.+..|+|||+|.+|-..++.+ ..++|+.||||++ .|..+|..||++.+... .+.+
T Consensus 319 lgt~en~t~v~~l~aT-eYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl 397 (567)
T KOG1247|consen 319 LGTEENYTVVHHLSAT-EYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELL 397 (567)
T ss_pred hcCCCCchhheeechh-hhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHH
Confidence 98777662 23322 3356788899999999999988877 5899999999997 57789999999987543 4567
Q ss_pred HHHHHHHHHHHh----cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHH
Q psy15223 2219 RRIRNTLRFLLA----NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2219 ~kl~n~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yl 2294 (2492)
+.|-|+...++. ...+..| ...+..-|+-+++.++++..+..++||.-..+++++.+|+.. ...|.|+
T Consensus 398 ~NLGNFvNR~l~fv~~~~~g~Vp------~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqyl 469 (567)
T KOG1247|consen 398 NNLGNFVNRVLKFVAAKYNGVVP------EMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYL 469 (567)
T ss_pred HHHHHHHHHHHHHHHHhhCCccc------ceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHH
Confidence 777766554443 3333333 223444488999999999999999999999999999999987 4689999
Q ss_pred HhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2295 DILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2295 e~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
+..++ ..+...+.++...+..+...++..+..||+|+||.++.+|...+.-
T Consensus 470 Q~~~~-~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 470 QENTD-NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred hcccc-cchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 97763 1222222233333456667788888999999999999999998864
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=389.96 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=142.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
|.|+|.+|.|++++|+.+.++++.+++| .||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 220 ~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~ 298 (463)
T PRK00260 220 TFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHY 298 (463)
T ss_pred CcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCC
Confidence 6899999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 1129 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~ 1129 (2492)
+++++|+++.+.++.+.+.+++|+++++.. ...|+|+++++..+.+++.++|+ +|++++|+.
T Consensus 299 ~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-----------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~ 361 (463)
T PRK00260 299 RSPLNFSEEALEQAKKALERLYNALAETAL-----------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALA 361 (463)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHhhh-----------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999998741 13568899999999999999995 999999999
Q ss_pred HHHHHHhhhhhhhHHH
Q psy15223 1130 KLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1130 ~l~~f~~~~ls~~Yl~ 1145 (2492)
.|++|+. + .+.|++
T Consensus 362 ~l~~lv~-~-~n~~~~ 375 (463)
T PRK00260 362 VLFELAR-E-INRALE 375 (463)
T ss_pred HHHHHHH-H-HHHHhh
Confidence 9999984 3 456654
|
|
| >COG1385 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=343.33 Aligned_cols=165 Identities=39% Similarity=0.604 Sum_probs=144.6
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
...++++++++||+++||++|||||||||++|+|+.|+||+++++.+++. |++||++|++||||||+|+.+|+|..+.+
T Consensus 76 ~~~~i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~-kler~~ki~ieAaEQs~R~~vP~I~~~~~ 154 (246)
T COG1385 76 LPLKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAA-KLERWQKIAIEAAEQSGRNVVPEIKPPES 154 (246)
T ss_pred CCceEEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchh-HHHHHHHHHHHHHHhcCCCcCCeeechhh
Confidence 45678999999999999999999999999999999999999999998887 99999999999999999999999999999
Q ss_pred hhHHHhccccc--ceEEeccCCcccccccc--cCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccch
Q psy15223 1487 FNNWLISKISC--ARILLSPRGRKKLSCWA--NNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASL 1562 (2492)
Q Consensus 1487 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~ 1562 (2492)
|++|+...... .++.+++.......... .....++++++||||||||++|+++|+++||.+|+|||||||||||++
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iiIGPEGGfs~~Ei~~l~~~g~~~v~LGprILRtETAal 234 (246)
T COG1385 155 LKELLKEIDDEDALKLIYEEKAKEGLLALPLLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRILRTETAAL 234 (246)
T ss_pred HHHHHHhcccchhhhheeccccccccccchhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCeEeccCCceehhhHHHH
Confidence 99999876633 35556655444333322 112457899999999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q psy15223 1563 VALAILNGEL 1572 (2492)
Q Consensus 1563 ~~~~~~~a~l 1572 (2492)
+|+|.+++.+
T Consensus 235 ~ala~i~~~~ 244 (246)
T COG1385 235 AALAALQALL 244 (246)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=364.97 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=148.8
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST 1048 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~ 1048 (2492)
+|.|+|.+|.|++++|+.+.++++.++++..||.++++| ||+ ..+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L-~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~ 345 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHL-HIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH 345 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEE-EeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc
Confidence 479999999999999999999999999999999999999 885 589999999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHHH
Q psy15223 1049 DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMI 1127 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~a 1127 (2492)
++++|++||++.+..+.+...+++|++..+.+.+...... ....+...|+|++..++.+...+.++| ++|+++.|
T Consensus 346 ~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~----~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~A 421 (651)
T PTZ00399 346 KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT----SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEA 421 (651)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999888888999888876554332111 111245689999999999999999999 78999999
Q ss_pred HHHHHHHHhhhhhhhHHH
Q psy15223 1128 VSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1128 ~~~l~~f~~~~ls~~Yl~ 1145 (2492)
+..|++|+. .+|.|++
T Consensus 422 l~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 422 LQALQKLIS--ATNTYLN 437 (651)
T ss_pred HHHHHHHHH--HHHHHHh
Confidence 999999994 4788885
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=362.70 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=148.6
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST 2198 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~ 2198 (2492)
.|.|+|.+|.|++|+|+.+.++++.+++++.||.++++| ||+ ..+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L-~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~ 345 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHL-HIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH 345 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEE-EeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc
Confidence 489999999999999999999999999999999999999 885 589999999999999999999999999999999988
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHHH
Q psy15223 2199 DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMI 2277 (2492)
Q Consensus 2199 ~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a 2277 (2492)
++++|++||++.+..+.+..++++|++..+...+...... ....+...|++++..++.+.+.+.++| ++|+++.|
T Consensus 346 ~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~----~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~A 421 (651)
T PTZ00399 346 KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT----SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEA 421 (651)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999988889999888776544322111 111235679999999999999999999 78999999
Q ss_pred HHHHHHHHHhhhhhhHHH
Q psy15223 2278 VSKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2278 ~~~l~~f~~~~ls~~Yle 2295 (2492)
+..|++|+. .+|.|++
T Consensus 422 l~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 422 LQALQKLIS--ATNTYLN 437 (651)
T ss_pred HHHHHHHHH--HHHHHHh
Confidence 999999993 4788885
|
|
| >PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=337.29 Aligned_cols=164 Identities=37% Similarity=0.556 Sum_probs=125.5
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
...+++|++|+||+++|||+|||||||||++|+|+.|+||++++..++..+|.+||++|+++|+|||+|+++|+|.+|.+
T Consensus 59 ~~~~i~L~~al~K~~~~d~il~katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~ 138 (225)
T PF04452_consen 59 PPPEITLAQALPKGDRMDWILQKATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPIS 138 (225)
T ss_dssp SSSEEEEEEE--STTHHHHHHHHHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEE
T ss_pred CcceEEEEEEEEcCccHHHHHHHHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeecccc
Confidence 33459999999999999999999999999999999999999998778888999999999999999999999999999999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCC--C-ceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSP--Q-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLV 1563 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~ 1563 (2492)
|++++........+++++.+............. + +++++||||||||++|+++|+++||.+||||+||||+|||+++
T Consensus 139 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~~~~~g~~~vsLG~~ILR~ETAai~ 218 (225)
T PF04452_consen 139 LKELLEDIPDEDLLILDEDEEPSLSSLSEILNSEKSFSIAIIIGPEGGFSEEEIEFLKEAGFQPVSLGPRILRTETAAIA 218 (225)
T ss_dssp HHHHHHHSSECSEEEE-TTTTCBGGGCSHTTSCHHC-EEEEEE--TT---HHHHHHHHHCTEEEEB-SSS---HHHHHHH
T ss_pred HHHHhhccccCCEEEEcccccccccchhhhhhcccCCcEEEEECCCCCCCHHHHHHHHHCCCEEEEcCCCEEehHHHHHH
Confidence 999998776666678887765544333222211 1 8999999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy15223 1564 ALAILNG 1570 (2492)
Q Consensus 1564 ~~~~~~a 1570 (2492)
|++.++|
T Consensus 219 als~l~y 225 (225)
T PF04452_consen 219 ALSILQY 225 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9998764
|
The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A .... |
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=353.69 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=128.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
.|.|+|.+|.|++++|+.+.++++.++++ .||.+.++|+.+++.+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 218 ~~~Dih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~ 296 (465)
T TIGR00435 218 DQIDIHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVH 296 (465)
T ss_pred CCceeeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCC
Confidence 36899999999999999999999999988 58888989988888999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++|+++.++++.+.+++|+|+++++...... ... . ..... .....+.+.+.++|+ ++++..|+
T Consensus 297 ~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~-~~~-~---~~~~~-------~~~~~~~~~f~~al~dDlnt~~a~ 364 (465)
T TIGR00435 297 YRSPLDFSEELLEAAKNALERLYKALRVLDTTLAY-SGN-Q---SLNKF-------PDEKEFEARFVEAMDDDLNTANAL 364 (465)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc-c---ccccc-------hhHHHHHHHHHHHHhhccCHHHHH
Confidence 99999999999999999999999999987543221 000 0 00000 112345567777885 89999999
Q ss_pred HHHHHHHH
Q psy15223 2279 SKLQIYCS 2286 (2492)
Q Consensus 2279 ~~l~~f~~ 2286 (2492)
..|++++.
T Consensus 365 ~~l~~~~~ 372 (465)
T TIGR00435 365 AVLFELAK 372 (465)
T ss_pred HHHHHHHH
Confidence 99999984
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >TIGR00046 RNA methyltransferase, RsmE family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=332.33 Aligned_cols=163 Identities=37% Similarity=0.523 Sum_probs=138.6
Q ss_pred cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCC
Q psy15223 1406 RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 1485 (2492)
Q Consensus 1406 rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~ 1485 (2492)
....+++|++|+||+++|||+|||||||||++|+|+.|+||+++++.+ ..+|.+||++|++||||||+|+++|+|.+|.
T Consensus 73 ~~~~~i~l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~-~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~ 151 (240)
T TIGR00046 73 ELPLKIHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPK 151 (240)
T ss_pred CCCcEEEEEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCch-HHHHHHHHHHHHHHHHHhcCCCCCCEECCcC
Confidence 445679999999999999999999999999999999999999998766 6689999999999999999999999999999
Q ss_pred ChhHHHhccccc-ceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1486 YFNNWLISKISC-ARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1486 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|++++...... ..+++++++......+. ...++++++||||||||++|+++|.++||.+||||+||||||||+++|
T Consensus 152 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~v~~~IGPEGGfs~~Ei~~~~~~gf~~vsLG~rILR~ETA~i~a 229 (240)
T TIGR00046 152 NLKEKCAEAYEEALKLNFHPEASPLSANLP--IPAGNIVIIIGPEGGFSEKEIQLLKEKGFTPVLLGPRILRTETAPLYA 229 (240)
T ss_pred CHHHHHhhCcCCCeEEEECCcccchhhhhc--cCCCcEEEEECCCCCCCHHHHHHHHHCCCEEEccCCcchhhccHHHHH
Confidence 999998754332 33455544332212221 123469999999999999999999999999999999999999999999
Q ss_pred hhhhccc
Q psy15223 1565 LAILNGE 1571 (2492)
Q Consensus 1565 ~~~~~a~ 1571 (2492)
+|.+++.
T Consensus 230 ls~~~~~ 236 (240)
T TIGR00046 230 LSILQAL 236 (240)
T ss_pred HHHHHHH
Confidence 9988753
|
Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=339.01 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=123.8
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
+.|+|.+|.|++++|+.+.++++.+++++.||.++++|+.+++.+|+|||||+||+|+|.++++. |++|++|||+++++
T Consensus 241 ~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~ 320 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGH 320 (411)
T ss_pred ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999886 89999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
|+++++||++.++++.+.+++|++++... . . . .+..+...+.++|+ ++++..|+
T Consensus 321 Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~------~-------~--------~~~~~~~~~~~al~dDln~p~a~ 375 (411)
T TIGR03447 321 YRQDRDWTDAVLAEAEARLARWRAALAAT----D------A-------P--------DATDLIARLRQHLANDLDTPAAL 375 (411)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHhhc----c------c-------c--------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999998887532 0 0 0 12234456667775 89999999
Q ss_pred HHHHHHH
Q psy15223 2279 SKLQIYC 2285 (2492)
Q Consensus 2279 ~~l~~f~ 2285 (2492)
..|++++
T Consensus 376 ~~l~~~~ 382 (411)
T TIGR03447 376 AAVDNWA 382 (411)
T ss_pred HHHHHHH
Confidence 9999988
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=338.30 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=123.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~ 1049 (2492)
+.|+|.+|.|++++|+.+.++++.++++..||.++++|+..++.+|+|||||+||+|+|.++++. |++|++|||+++++
T Consensus 241 ~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~ 320 (411)
T TIGR03447 241 GFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGH 320 (411)
T ss_pred ceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999886 89999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++||++.|+++.+.+.++++++..+ . . . .+..+...+.++++ .+++..|+
T Consensus 321 Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~----~----~---------~--------~~~~~~~~~~~al~dDln~p~a~ 375 (411)
T TIGR03447 321 YRQDRDWTDAVLAEAEARLARWRAALAAT----D----A---------P--------DATDLIARLRQHLANDLDTPAAL 375 (411)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHhhc----c----c---------c--------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999998887632 0 0 0 12234456667776 89999999
Q ss_pred HHHHHHH
Q psy15223 1129 SKLQIYC 1135 (2492)
Q Consensus 1129 ~~l~~f~ 1135 (2492)
..|++++
T Consensus 376 ~~l~~~~ 382 (411)
T TIGR03447 376 AAVDNWA 382 (411)
T ss_pred HHHHHHH
Confidence 9999998
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=334.89 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=126.8
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
|.|+|.+|.|++++|+.+.++++.+++++.||.++++||.+++.+|+|||||+||+|+|.++++. ++++++|||+++++
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~ 293 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGH 293 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccC
Confidence 67999999999999999999999999999999999999999999999999999999999998753 55559999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++|+++.++++.+.+.+++|++... . . . .+.++.+.+.++|+ ++++..|+
T Consensus 294 yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~----~---------~--------~~~~~~~~f~~al~dDlnt~~a~ 348 (384)
T PRK12418 294 YRADREWTDAVLAEAEARLARWRAAAALP----A----G---------P--------DAADVVARVRAALADDLDTPGAL 348 (384)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHhcc----c----c---------c--------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999877531 0 0 0 12344677888886 79999999
Q ss_pred HHHHHHHHhhhhhhHH
Q psy15223 2279 SKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yl 2294 (2492)
..|++++. ..|.|+
T Consensus 349 ~~l~~~~~--~~n~~~ 362 (384)
T PRK12418 349 AAVDGWAT--DALEGG 362 (384)
T ss_pred HHHHHHHH--HHHhcc
Confidence 99999994 356664
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=334.50 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=126.6
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~ 1049 (2492)
+.|+|.+|.|++++|+.+.++++.++++..||.++++||.+++.+|+|||||+||+|+|.++++. ++++++|||+++++
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~ 293 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGH 293 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccC
Confidence 57999999999999999999999999999999999999999999999999999999999998653 55559999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++|+++.++++.+.+.+++|+++.. . . . .+.++.+.+.++++ ++++..|+
T Consensus 294 yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~----~----------~-------~~~~~~~~f~~al~dDlnt~~a~ 348 (384)
T PRK12418 294 YRADREWTDAVLAEAEARLARWRAAAALP----A----G----------P-------DAADVVARVRAALADDLDTPGAL 348 (384)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHhcc----c----c----------c-------hHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999987532 0 0 0 12344677888887 79999999
Q ss_pred HHHHHHHhhhhhhhHH
Q psy15223 1129 SKLQIYCSEDLGSFYL 1144 (2492)
Q Consensus 1129 ~~l~~f~~~~ls~~Yl 1144 (2492)
..|++++.. .|.|+
T Consensus 349 ~~l~~~~~~--~n~~~ 362 (384)
T PRK12418 349 AAVDGWATD--ALEGG 362 (384)
T ss_pred HHHHHHHHH--HHhcc
Confidence 999999943 56664
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=341.02 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=128.0
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
|.|+|.+|.|++++|+.+.++++.++++ .||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 219 ~~Dih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~ 297 (465)
T TIGR00435 219 QIDIHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHY 297 (465)
T ss_pred CceeeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCC
Confidence 6799999999999999999999999988 588888888888889999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 1129 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~ 1129 (2492)
+++++|+++.++++.+.+.+|+|+++++...... ... . ... .+ .....+.+.+.++|+ .+++..|+.
T Consensus 298 ~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~-~~~---~-~~~---~~----~~~~~~~~~f~~al~dDlnt~~a~~ 365 (465)
T TIGR00435 298 RSPLDFSEELLEAAKNALERLYKALRVLDTTLAY-SGN---Q-SLN---KF----PDEKEFEARFVEAMDDDLNTANALA 365 (465)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc---c-ccc---cc----hhHHHHHHHHHHHHhhccCHHHHHH
Confidence 9999999999999999999999999987543221 000 0 000 00 112345566777776 899999999
Q ss_pred HHHHHHh
Q psy15223 1130 KLQIYCS 1136 (2492)
Q Consensus 1130 ~l~~f~~ 1136 (2492)
.|.+++.
T Consensus 366 ~l~~~~~ 372 (465)
T TIGR00435 366 VLFELAK 372 (465)
T ss_pred HHHHHHH
Confidence 9999994
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=318.03 Aligned_cols=159 Identities=42% Similarity=0.635 Sum_probs=134.6
Q ss_pred cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCC
Q psy15223 1406 RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 1485 (2492)
Q Consensus 1406 rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~ 1485 (2492)
.....+++++|+||+++|||+|||||||||++|+|+.|+||+.++..++..+|.+||++|+++|||||+|+++|+|..+.
T Consensus 71 ~~~~~l~l~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~ 150 (234)
T PRK11713 71 EPPLRLTLAQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPI 150 (234)
T ss_pred CCCCeEEEEEeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcC
Confidence 44567999999999999999999999999999999999999999877777789999999999999999999999999999
Q ss_pred ChhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhh
Q psy15223 1486 YFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVAL 1565 (2492)
Q Consensus 1486 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~ 1565 (2492)
+|++++++..... + . .... ..+. ....++++++||||||||++|+++|+++||.+||||+||||+|||+++++
T Consensus 151 ~~~~~l~~~~~~~-~--~-~~~~--~~l~-~~~~~~i~viIGPEGGfs~~Ei~~l~~~g~~~vsLG~~ILR~ETA~i~al 223 (234)
T PRK11713 151 SLKEFLEELLPAD-L--K-AGLK--LVLH-PEAGGKVLLLIGPEGGFSPEEIELLREAGFTPVSLGPRILRTETAALAAL 223 (234)
T ss_pred CHHHHHhhccccc-c--c-hhhh--hhcC-cCCCCeEEEEECCCCCCCHHHHHHHHHCCCEEeccCCCchhhhhHHHHHH
Confidence 9999987543211 1 0 0000 0011 11234699999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q psy15223 1566 AILNGE 1571 (2492)
Q Consensus 1566 ~~~~a~ 1571 (2492)
+.+.+.
T Consensus 224 s~~~~~ 229 (234)
T PRK11713 224 AALQAL 229 (234)
T ss_pred HHHHHH
Confidence 987644
|
|
| >PRK10860 tRNA-specific adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-32 Score=297.68 Aligned_cols=147 Identities=47% Similarity=0.804 Sum_probs=139.8
Q ss_pred CCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCC
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEP 125 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EP 125 (2492)
|..||..|+++|+++...|+.|||||||++|+||++|+|+..+.+||+.||||+||++|.+.++++++. |||||||+||
T Consensus 13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~-g~tlY~TlEP 91 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLL-DATLYVTLEP 91 (172)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcC-CcEEEeeCCC
Confidence 567999999999999999999999999999999999999999999999999999999999998888886 9999999999
Q ss_pred hHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 126 CAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 126 C~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
|+||++||+|+||+|||||+.+++.++.|+++.++...++++++.|++|++++||.+|++.||+++|+
T Consensus 92 C~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~ 159 (172)
T PRK10860 92 CVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQ 159 (172)
T ss_pred cHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988664
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=324.21 Aligned_cols=165 Identities=19% Similarity=0.190 Sum_probs=128.6
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~ 1049 (2492)
+.|+|.+|.|++++|+.+.+.++.+..+. +|-++++| |||. .+|+|||||+||+|++.|++++||+|++|||+++++
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~h 354 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTH 354 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccC
Confidence 47999999999999999999999998775 56555555 6666 999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++|+++.++.+...+.++.++++.+...+..-. ...... ..+.-+...+..+.+.+.+||+ ++++..|+
T Consensus 355 yr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~---~~~~~~---~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al 428 (557)
T PLN02946 355 YRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHD---STFEKD---SVPPDTLNCINKFHDEFVTSMSDDLHTPVAL 428 (557)
T ss_pred CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cccccc---ccchhhHHHHHHHHHHHHHHHHhccChHHHH
Confidence 9999999999999999888888888877643332100 000000 0111122345567788888887 89999999
Q ss_pred HHHHHHHhhhhhhhHHH
Q psy15223 1129 SKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1129 ~~l~~f~~~~ls~~Yl~ 1145 (2492)
..|++++.. .|.+++
T Consensus 429 ~~l~~~vk~--~N~~~~ 443 (557)
T PLN02946 429 AALSEPLKT--INDLLH 443 (557)
T ss_pred HHHHHHHHH--HHHHhh
Confidence 999999942 455654
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=323.03 Aligned_cols=165 Identities=19% Similarity=0.188 Sum_probs=129.1
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
+.|+|.+|.|++|+|+.+.+.++.+..+. +|-+.++| |||. .+|+|||||+||+|++.|++++||+|++|||+++++
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~h 354 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTH 354 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccC
Confidence 57999999999999999999999998765 66666666 6665 999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
|+++++|+++.++.+.+.+.++++++..+...+.... ....... .+..+...+..+.+.+.++|+ ++++..|+
T Consensus 355 yr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~---~~~~~~~---~~~~~~~~~~~~~~~f~~Al~DDlntp~Al 428 (557)
T PLN02946 355 YRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHD---STFEKDS---VPPDTLNCINKFHDEFVTSMSDDLHTPVAL 428 (557)
T ss_pred CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccccc---cchhhHHHHHHHHHHHHHHHHhccChHHHH
Confidence 9999999999999999988899888877643322100 0000000 011122345567788889986 89999999
Q ss_pred HHHHHHHHhhhhhhHHH
Q psy15223 2279 SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yle 2295 (2492)
..|++++. ..|.++.
T Consensus 429 ~~l~~~vk--~~N~~~~ 443 (557)
T PLN02946 429 AALSEPLK--TINDLLH 443 (557)
T ss_pred HHHHHHHH--HHHHHhh
Confidence 99999994 3555553
|
|
| >COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=287.79 Aligned_cols=148 Identities=45% Similarity=0.814 Sum_probs=141.8
Q ss_pred cccccCCCCCCCcccccccccccCCcceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEE
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKI 119 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~l 119 (2492)
+..++|..||+.|+.+|+++.+.|+.|||||||+ +|+|++.|+|.....+||++|||++||++|++.+++++|. ||||
T Consensus 3 ~~~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~-~~tl 81 (152)
T COG0590 3 FLSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLK-DCTL 81 (152)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcC-CcEE
Confidence 3456788999999999999998899999999998 9999999999999999999999999999999999998886 9999
Q ss_pred EEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHH
Q psy15223 120 YVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFI 189 (2492)
Q Consensus 120 y~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~ 189 (2492)
|||+|||+||++||+||||+|||||+++++.|+.|+...++.+...+|++.|.+|++++||..+++.||.
T Consensus 82 yvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 82 YVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred EEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=322.65 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=124.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCc---------------cccEEEEeeeEEcCCCceeeeccCCccCcchhhhc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSA---------------PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL 2185 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~---------------pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~ 2185 (2492)
+.|+|.+|.|++|+|+.+.++++.++.|.. ||.+.++|+-.+..+|+|||||+||+|+|.+++++
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh
Confidence 469999999999999999999999987762 68888888766669999999999999999999999
Q ss_pred cChhHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHH
Q psy15223 2186 FGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265 (2492)
Q Consensus 2186 yGaD~lR~~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 2265 (2492)
||+|++|||+++++|+++++|+++.++++.+.+++++++++.+... .+ . ....+..+.+.+
T Consensus 526 ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~----~~--------~-------~~~~l~~~~~~f 586 (699)
T PRK14535 526 YDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA----EF--------M-------LSENVNDYTRRF 586 (699)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc----cc--------h-------hhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999887654210 00 0 012344566788
Q ss_pred HHHHh-cccHHHHHHHHHHHHH
Q psy15223 2266 LSHYR-MYEFHMIVSKLQIYCS 2286 (2492)
Q Consensus 2266 ~~a~e-~~~f~~a~~~l~~f~~ 2286 (2492)
.++|+ ++++..|+..|++++.
T Consensus 587 ~~AL~DDlntp~Ala~L~~lvk 608 (699)
T PRK14535 587 YAAMNDDFGTVEAVAVLFELAG 608 (699)
T ss_pred HHHHhhccChHHHHHHHHHHHH
Confidence 88886 8999999999999984
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=321.45 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=129.5
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
..|+|.+|.|++|+|+.+.++++.++.+. ||.++++|+.++..+|+|||||+||+|++.+++++ |+++++|||+++++
T Consensus 233 ~~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~ 311 (490)
T PRK14536 233 QCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGH 311 (490)
T ss_pred ceeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCC
Confidence 35999999999999999999999998875 99999999999999999999999999999999998 99999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc-ccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI-IKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMI 2277 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~-~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a 2277 (2492)
++++++||++.|.++.+.+.+|.+++..+........+.... .........+.-....+..+.+.+.++|+ ++++..|
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~A 391 (490)
T PRK14536 312 YRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKA 391 (490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHH
Confidence 999999999999999999999999887664322110000000 00000000000011234566788888886 8999999
Q ss_pred HHHHHHHHH
Q psy15223 2278 VSKLQIYCS 2286 (2492)
Q Consensus 2278 ~~~l~~f~~ 2286 (2492)
+..|++++.
T Consensus 392 l~~l~~~~~ 400 (490)
T PRK14536 392 LSELQKLVK 400 (490)
T ss_pred HHHHHHHHH
Confidence 999999983
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=322.26 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=124.1
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCC---------------CceEEEEeeEEEcCCCccccccCCCccCcchhhhh
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSA---------------PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL 1035 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~---------------p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~ 1035 (2492)
+.|+|.+|.|++++|+.+.+.++.++.|.. ||.++++|.-.+..+|+|||||+||+|+|.+++++
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh
Confidence 469999999999999999999999988762 68788887666669999999999999999999999
Q ss_pred cChhhHHHHhhccCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHH
Q psy15223 1036 FGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115 (2492)
Q Consensus 1036 yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 1115 (2492)
||+|++|||+++++|+++++||++.++++...+.+++++++.+... . . . ....+..+.+.+
T Consensus 526 ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~--~---------~----~----~~~~l~~~~~~f 586 (699)
T PRK14535 526 YDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA--E---------F----M----LSENVNDYTRRF 586 (699)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc--c---------c----h----hhhhHHHHHHHH
Confidence 9999999999999999999999999999999999998888654210 0 0 0 012344566778
Q ss_pred HHHHh-ccchHHHHHHHHHHHh
Q psy15223 1116 LSHYR-MYEFHMIVSKLQIYCS 1136 (2492)
Q Consensus 1116 ~~a~~-~~~f~~a~~~l~~f~~ 1136 (2492)
.+|++ .+++..|+..|++++.
T Consensus 587 ~~AL~DDlntp~Ala~L~~lvk 608 (699)
T PRK14535 587 YAAMNDDFGTVEAVAVLFELAG 608 (699)
T ss_pred HHHHhhccChHHHHHHHHHHHH
Confidence 88886 8999999999999984
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=317.56 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=129.1
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccCc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTDY 1050 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~~ 1050 (2492)
.|+|.+|.|++++|+.+.+.++.++.|. ||.++++|+.++..+|+|||||+||+|++.+++++ |+++++|||+++++|
T Consensus 234 ~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~y 312 (490)
T PRK14536 234 CDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHY 312 (490)
T ss_pred eeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCC
Confidence 5999999999999999999999998875 99999999999999999999999999999999998 999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-ccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINI-IKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~-~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
+++++||++.|.++.+.+.+|.+++..+........+.... .........+.-....+..+...+.+||+ .+++..|+
T Consensus 313 r~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al 392 (490)
T PRK14536 313 RSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKAL 392 (490)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999887664322110000000 00000000000011234566788888886 89999999
Q ss_pred HHHHHHHh
Q psy15223 1129 SKLQIYCS 1136 (2492)
Q Consensus 1129 ~~l~~f~~ 1136 (2492)
..|++++.
T Consensus 393 ~~l~~~~~ 400 (490)
T PRK14536 393 SELQKLVK 400 (490)
T ss_pred HHHHHHHH
Confidence 99999983
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=293.15 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=125.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~~ 2199 (2492)
..|+|.+|.|++++|+...+.++.+..+. ||.++++|+.++..+|+|||||+||+|++.|++++ |+++++|||+++++
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~ 311 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAH 311 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCC
Confidence 47999999999999999999999988764 88888888877778999999999999999999996 99999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~ 2278 (2492)
++++++||++.|+++.+.+++|++.++.+...+...... ......... .......+.+.+.++|+ ++++..|+
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~f~~Al~DDlNtp~Al 385 (481)
T PRK14534 312 YRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLN--LLNKDLENI----EFSLEKEYYDSFLEKIAFDLNIPQGL 385 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccc----hhhhHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999999999887664433211000 000000000 00112344567888886 89999999
Q ss_pred HHHHHHHH
Q psy15223 2279 SKLQIYCS 2286 (2492)
Q Consensus 2279 ~~l~~f~~ 2286 (2492)
..|++++.
T Consensus 386 ~~l~~~~k 393 (481)
T PRK14534 386 ALLWDIIK 393 (481)
T ss_pred HHHHHHHH
Confidence 99999883
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=287.78 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=125.5
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~~ 1049 (2492)
..|+|.+|.|++++|+.+.+.++.+..|. ||.++++|+.++..+|+|||||+||+|++.|++++ |+++++|||+++++
T Consensus 233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~ 311 (481)
T PRK14534 233 TLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAH 311 (481)
T ss_pred cceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCC
Confidence 46999999999999999999999988764 88888888877778999999999999999999996 99999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~ 1128 (2492)
|+++++||++.|+++...++++++.++.+...+...... ......... .......+.+.+.+||+ .+++..|+
T Consensus 312 yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~f~~Al~DDlNtp~Al 385 (481)
T PRK14534 312 YRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLN--LLNKDLENI----EFSLEKEYYDSFLEKIAFDLNIPQGL 385 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccccccccc----hhhhHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999999999888664443211000 000000000 00112345567788886 89999999
Q ss_pred HHHHHHHh
Q psy15223 1129 SKLQIYCS 1136 (2492)
Q Consensus 1129 ~~l~~f~~ 1136 (2492)
..|++++.
T Consensus 386 ~~l~~~~k 393 (481)
T PRK14534 386 ALLWDIIK 393 (481)
T ss_pred HHHHHHHH
Confidence 99999983
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-27 Score=271.00 Aligned_cols=86 Identities=27% Similarity=0.311 Sum_probs=82.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 2200 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~ 2200 (2492)
|.|++.+|.|++++|+.++++++.+++++ ||+++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 57999999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q psy15223 2201 SKDLSIS 2207 (2492)
Q Consensus 2201 ~~d~~fs 2207 (2492)
.++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999886
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-27 Score=269.57 Aligned_cols=86 Identities=27% Similarity=0.311 Sum_probs=82.7
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
|.|++.+|.|++++|+.++++++.++.+. ||+++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||++++++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 57999999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q psy15223 1051 SKDLSIS 1057 (2492)
Q Consensus 1051 ~~d~~fs 1057 (2492)
.++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999886
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=285.54 Aligned_cols=196 Identities=23% Similarity=0.257 Sum_probs=144.6
Q ss_pred eeecccccchhhHHHHHHHHHHhcCCCCce-EEEEe---eEEEcCCCccccccCCCccCcchhhhh-cCh----------
Q psy15223 974 LYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGA---------- 1038 (2492)
Q Consensus 974 l~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~h---G~vld~~G~KMSKS~GN~i~p~~ii~~-yGa---------- 1038 (2492)
+|+.|.||. +||..+.....++... |.. +++.| |++++++|+|||||+||+|+|+|++++ +|+
T Consensus 276 i~V~g~~q~-~hf~~~~~~~~~lg~~-~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~ 353 (507)
T PRK01611 276 IYVVGADHH-GHFKRLKAALKALGYD-PDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEI 353 (507)
T ss_pred EEEECCChH-HHHHHHHHHHHHcCCC-cccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhh
Confidence 667788998 6888877776666543 443 55666 899999999999999999999999999 999
Q ss_pred ------hhHHHHhhccCcccccccCHHHHHHHH--------HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHH
Q psy15223 1039 ------EILRLWVASTDYSKDLSISNEILNRVV--------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYA 1104 (2492)
Q Consensus 1039 ------D~lRl~l~s~~~~~d~~fs~~~l~~~~--------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~i 1104 (2492)
|++||++++.+..+|++|+++.+.... -++.|+.+.++..... ...+. ......+.|+|+
T Consensus 354 a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~--~~~~~----~~~l~~~~e~~L 427 (507)
T PRK01611 354 AEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEA--GIDLL----LALLTEEEEKEL 427 (507)
T ss_pred hhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcc--Ccccc----ccccCCHHHHHH
Confidence 999999999889999999999876542 2344566655543110 11111 011125789999
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHHHHHHHHHHhcc
Q psy15223 1105 IINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWHINQSLLRLISP 1181 (2492)
Q Consensus 1105 l~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~-~~~~r~sa~~~L~~il~~l~~lLaP 1181 (2492)
+.+|..+...+.+++++|+++.+++.+++|+ +.|++||=+ . ++-.+.. -...|.........+|...+.||.-
T Consensus 428 l~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY~~-~--~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi 501 (507)
T PRK01611 428 IKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYNR-V--LLKDEEEELRNARLALVKATAQVLKNGLDLLGI 501 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHH-C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999 789999932 2 2221111 1235555566666777777777753
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=269.96 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=130.6
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCC
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 2201 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~ 2201 (2492)
.|+|.+|.|++|+|+.+.++++.+.+|..||.++++|.-.+..+|+|||||+||++++.|++++|++.+|||+|++++|+
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR 301 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYR 301 (464)
T ss_pred cceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhC
Confidence 59999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHH
Q psy15223 2202 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVSK 2280 (2492)
Q Consensus 2202 ~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~~~ 2280 (2492)
++++||++.|+++.+.+.+|+|+++.+.....+... . .+.++...+.++|+ +|++..|+..
T Consensus 302 ~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~----------~--------~~~~~~~~f~~al~DDfnt~~al~~ 363 (464)
T COG0215 302 SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL----------A--------DLKEFEARFREALDDDFNTPKALAV 363 (464)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------c--------hhHHHHHHHHHHHHhccCcHHHHHH
Confidence 999999999999999999999999876532222110 0 34556666888885 8999999999
Q ss_pred HHHHHH
Q psy15223 2281 LQIYCS 2286 (2492)
Q Consensus 2281 l~~f~~ 2286 (2492)
|.+++.
T Consensus 364 l~~l~~ 369 (464)
T COG0215 364 LFELAK 369 (464)
T ss_pred HHHHHH
Confidence 999984
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=267.08 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=131.0
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 1051 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~ 1051 (2492)
.|+|.+|.|++++|+.+.+.+|.+.+|..||.++++|...+..+|+|||||+||++++.|++++|++.+|||++++++|+
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR 301 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYR 301 (464)
T ss_pred cceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhC
Confidence 59999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHH
Q psy15223 1052 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVSK 1130 (2492)
Q Consensus 1052 ~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~~ 1130 (2492)
++++||++.|+++...+.+|.|+++.+.....+... . ...++..++.++++ .|++..|+..
T Consensus 302 ~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~----------~--------~~~~~~~~f~~al~DDfnt~~al~~ 363 (464)
T COG0215 302 SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAEL----------A--------DLKEFEARFREALDDDFNTPKALAV 363 (464)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------c--------hhHHHHHHHHHHHHhccCcHHHHHH
Confidence 999999999999999999999999987643322110 0 34556666778876 8999999999
Q ss_pred HHHHHh
Q psy15223 1131 LQIYCS 1136 (2492)
Q Consensus 1131 l~~f~~ 1136 (2492)
|.+++.
T Consensus 364 l~~l~~ 369 (464)
T COG0215 364 LFELAK 369 (464)
T ss_pred HHHHHH
Confidence 999984
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=277.67 Aligned_cols=195 Identities=23% Similarity=0.263 Sum_probs=142.1
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCcccc-EEEEe---eeEEcCCCceeeeccCCccCcchhhhc-cCh----------
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGA---------- 2188 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk-~v~~h---G~vld~~G~KMSKS~GNvi~p~~ii~~-yGa---------- 2188 (2492)
+|+.|.||. +||..+.....++... |.. +++.| |++++.+|+|||||+||+|+|+|++++ +|+
T Consensus 276 i~V~g~~q~-~hf~~~~~~~~~lg~~-~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~ 353 (507)
T PRK01611 276 IYVVGADHH-GHFKRLKAALKALGYD-PDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEI 353 (507)
T ss_pred EEEECCChH-HHHHHHHHHHHHcCCC-cccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhh
Confidence 678889998 6777777666655533 443 55666 899999999999999999999999999 999
Q ss_pred ------hHHHHHHhccCCCCcccccHHHHHHH--------HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHH
Q psy15223 2189 ------EILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYA 2254 (2492)
Q Consensus 2189 ------D~lR~~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~i 2254 (2492)
|++||++++.+..+|++|+++.+... ...+.|+.+.++..... ...+. ......+.|+|+
T Consensus 354 a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~--~~~~~----~~~l~~~~e~~L 427 (507)
T PRK01611 354 AEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEA--GIDLL----LALLTEEEEKEL 427 (507)
T ss_pred hhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhcc--Ccccc----ccccCCHHHHHH
Confidence 99999999988999999999987654 33444565555543210 11110 011125789999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2255 IINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2255 l~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~-~~~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
+.++..+...+.+++++|+++.+++.+++|+ +.|++||=+ . ++-.+.. -...|.........+|...+.||.
T Consensus 428 l~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY~~-~--~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLg 500 (507)
T PRK01611 428 IKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYNR-V--LLKDEEEELRNARLALVKATAQVLKNGLDLLG 500 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHH-C--CCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998 789999932 2 2221111 113444455556667777777764
|
|
| >PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=272.65 Aligned_cols=182 Identities=24% Similarity=0.347 Sum_probs=153.5
Q ss_pred cCCCCCCCccccccccc--ccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc
Q psy15223 45 TDSPYLSPIPHRAKLAL--IAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT 122 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~--~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t 122 (2492)
+|..||..|+++|+++. .++++|||||||++|+||++|+|...+ ..|||++||++|++.+ +|||||||
T Consensus 2 ~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g----~~HAE~~ai~~a~~~~------~g~tlyvT 71 (367)
T PRK10786 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAG----EPHAEVHALRMAGEKA------KGATAYVT 71 (367)
T ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCC----CCCHHHHHHHHHhhhc------CCCEEEEe
Confidence 35679999999999985 457999999999999999999998754 5899999999998753 49999999
Q ss_pred CCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccC
Q psy15223 123 LEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRN 193 (2492)
Q Consensus 123 ~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~ 193 (2492)
+||| +||++||+++||+|||||+.||+.+..|++...++++++. |..|++++||.++++.||.+ +||
T Consensus 72 lEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~----v~~~~~~~e~~~l~~~f~~~~~~~rP 147 (367)
T PRK10786 72 LEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID----VSHGLMMSEAEALNKGFLKRMRTGFP 147 (367)
T ss_pred cCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcE----EEcCCcHHHHHHHHHHHHHHhhcccc
Confidence 9999 8999999999999999999999999888889999877665 88899999999999999965 789
Q ss_pred cccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeC
Q psy15223 194 FVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNG 245 (2492)
Q Consensus 194 ~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg 245 (2492)
|++.|.|..--.++-. ..|....|++++.+-. +.||.. -|.|.|.-|
T Consensus 148 ~V~~k~A~SlDGkia~----~~g~s~~is~~~~~~~~h~lRa~-~DaIlVGa~ 195 (367)
T PRK10786 148 YIQLKLGASLDGRTAM----ASGESQWITSPQARRDVQRLRAQ-SHAILTSSA 195 (367)
T ss_pred eEEEEEeecCCCCccC----CCCcccccCCHHHHHHHHHHHhH-CCEEEECcC
Confidence 9999999822223322 2466777888777776 999997 477766443
|
|
| >PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=268.92 Aligned_cols=178 Identities=25% Similarity=0.368 Sum_probs=146.3
Q ss_pred cccCCCCCCCccccccccccc--CCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEE
Q psy15223 43 IETDSPYLSPIPHRAKLALIA--GEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIY 120 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~~~~--~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly 120 (2492)
...|..||+.|+++|+++... +++|||||||++|+||++|+|...+ ..|||++||++|++.+ .|+|||
T Consensus 29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~g----~~HAEi~Ai~~a~~~~------~g~tly 98 (380)
T PLN02807 29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAG----QPHAEVFALRDAGDLA------ENATAY 98 (380)
T ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCCC----CcCHHHHHHHHhhhhc------CCcEEE
Confidence 345678999999999998654 4788999999999999999998754 5899999999998753 489999
Q ss_pred EcCCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---c
Q psy15223 121 VTLEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---R 191 (2492)
Q Consensus 121 ~t~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~ 191 (2492)
||+||| |||++||+++||+|||||+.||++++.|++.++++++|+. |..|++++||.+|++.||++ +
T Consensus 99 vTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~----V~~g~~~~e~~~l~~~f~~~~~~~ 174 (380)
T PLN02807 99 VSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIE----VTVGVEEELCRKLNEAFIHRMLTG 174 (380)
T ss_pred EEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCE----EEeCcCHHHHHHHHHHHHHHHhhc
Confidence 999999 8999999999999999999999999889999999998865 88899999999999999965 7
Q ss_pred cCcccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 192 RNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 192 ~~~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
|||++.|+|..--.++-.. .|+.- +.++.. +-||.+ -|.|.|.
T Consensus 175 rP~V~lK~A~SlDGkia~~----~g~s~----~~s~~~vh~lRa~-~DAIlVG 218 (380)
T PLN02807 175 KPFVTLRYSMSMNGCLLNQ----IGEGA----DDAGGYYSQLLQE-YDAVILS 218 (380)
T ss_pred cccEEEEEEEcCCCCeeCC----CCCCh----hhhhHHHHHHHhh-CCEEEEc
Confidence 8999999998222233211 22222 444444 667765 5888886
|
|
| >COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=222.92 Aligned_cols=135 Identities=27% Similarity=0.458 Sum_probs=122.9
Q ss_pred cccCCCCCCCcccccccc--cccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEE
Q psy15223 43 IETDSPYLSPIPHRAKLA--LIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIY 120 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~--~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly 120 (2492)
.+.|..||..|+++|++. ...+|++||||||++|+||++|++...+ .+|||..||++|.... +|+|+|
T Consensus 3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG----~pHAEv~Al~~ag~~a------~Gat~y 72 (146)
T COG0117 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAG----GPHAEVCALRMAGEAA------RGATAY 72 (146)
T ss_pred chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCC----CCcHHHHHHHHcCccc------CCCEEE
Confidence 346788999999999975 4567999999999999999999998866 6799999999996543 599999
Q ss_pred EcCCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhc
Q psy15223 121 VTLEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR 191 (2492)
Q Consensus 121 ~t~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~ 191 (2492)
||+||| |+|+.+|+.+||+|||++..||++.+.|.|+..|+++|+. |..|++++|+..+++.|+.+.
T Consensus 73 VTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~----V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 73 VTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIE----VEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred EEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCe----EEEehhHHHHHHHHHHHHccc
Confidence 999999 8999999999999999999999999999999999999988 888999999999999998763
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=253.60 Aligned_cols=122 Identities=19% Similarity=0.273 Sum_probs=95.5
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC--------CchHHHHHHHHhCcCC--CH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH--------GMPIEIQIEKLYGKNL--SP 517 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~h--------GlpiE~~a~k~~~~~~--~~ 517 (2492)
++++|++.+|++ |||.+||||++.++..|+++||+||+|++|.|+.|||+| |+|-+ +++.+|..+ -|
T Consensus 17 ~~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~ip 93 (353)
T cd00674 17 GKEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSSVP 93 (353)
T ss_pred CCCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchhch
Confidence 346799988885 999999999999999999999999999999999999999 56665 555555422 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCC-hHHHHHHHHHHHHHHHcCCe
Q psy15223 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYV 576 (2492)
Q Consensus 518 ~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d-~~y~~~~~~~f~~l~~kGli 576 (2492)
..+ ..|.+|++++.+.+++.|++|||++| .|.|++ ...-.....++..|.+++.|
T Consensus 94 ~p~-g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I 149 (353)
T cd00674 94 DPF-GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEI 149 (353)
T ss_pred hhc-CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChH
Confidence 222 34667999999999999999999776 344444 44446777777777777665
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=253.36 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=95.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC--------ChHHHHHHHHHhccCC--CH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH--------GMPIEIQIEKLYGKNL--SP 1667 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~h--------GlPie~~a~k~~~~~~--~~ 1667 (2492)
++++|+|+.|++ |||.+||||++.++..|+++||.||+|++|.|+.|||.| |+|-+ +++.+|..+ -|
T Consensus 17 ~~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~ip 93 (353)
T cd00674 17 GKEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSSVP 93 (353)
T ss_pred CCCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchhch
Confidence 346799988885 999999999999999999999999999999999999999 56665 455555421 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCC-hHHHHHHHHHHHHHHhCCce
Q psy15223 1668 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGYV 1726 (2492)
Q Consensus 1668 ~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d-~~y~~~~~~~F~~L~~kGli 1726 (2492)
..+ ..|.+|++++.+.+++.|++||+++|+ |.|++ ...-.+.+.++..|.+++.|
T Consensus 94 ~p~-g~~~~~~d~~~~~f~~~l~~lgi~~d~---~~~T~~y~~g~~~~~i~~~L~~~~~I 149 (353)
T cd00674 94 DPF-GCCESYAEHFERPFEESLEKLGIEVEF---ISQSQMYKSGLYDENILIALEKRDEI 149 (353)
T ss_pred hhc-CCCHHHHHHHHHHHHHHHHHcCCeeee---eecCCchhhchHHHHHHHHHHHCChH
Confidence 222 235579999999999999999998863 44444 44447777888888777665
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=263.05 Aligned_cols=175 Identities=25% Similarity=0.340 Sum_probs=144.1
Q ss_pred CCCccccccccccc--CCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCCh-
Q psy15223 50 LSPIPHRAKLALIA--GEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC- 126 (2492)
Q Consensus 50 M~~a~~~a~~~~~~--~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC- 126 (2492)
|+.|+++|+++... +++|||||||+||+||++|+|... ++.|||++||++|.+++ +|||||||+|||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~~----~~~HAE~~ai~~a~~~~------~g~tlyvtlEPC~ 70 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKA----GEPHAEVHALRQAGENA------KGATAYVTLEPCS 70 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCCC----CCCCHHHHHHHHhcccc------CCcEEEEeCCCCC
Confidence 67888999988654 688999999999999999999864 48999999999998753 499999999999
Q ss_pred -----HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccCccccc
Q psy15223 127 -----AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRNFVKNK 198 (2492)
Q Consensus 127 -----~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~~~~~~ 198 (2492)
|||++||+++||+|||||+.||+.+..|++..++++.++. |..|++++||.+|++.||.+ +|||++.|
T Consensus 71 ~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~----v~~~~~~~e~~~l~~~f~~~~~~~rP~v~~~ 146 (344)
T TIGR00326 71 HQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIE----VTFGILKEEAERLNKGFLKRMRTGLPYVQLK 146 (344)
T ss_pred CCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhcCCcE----EEeCCCHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8999999999999999999999999888899999988764 78899999999999999965 67999999
Q ss_pred ccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 199 SINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 199 ~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
.|. ++ .-|+... .|..-.+++++.+.. +.+|-+ -|.|.+.
T Consensus 147 ~a~-SL-DG~Ia~~--~g~~~wi~~~~~~~~~~~lra~-~DailvG 187 (344)
T TIGR00326 147 LAA-SL-DGKIATA--SGESKWITSEAARTDAQQLRAQ-SDAILVG 187 (344)
T ss_pred Eee-CC-CCCcccc--CCCccccCCHHHHHHHHHHHHH-CCEEEEC
Confidence 998 33 2333322 333345666665554 888875 5666653
|
This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=227.81 Aligned_cols=179 Identities=43% Similarity=0.780 Sum_probs=154.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
|+.+.++++.+.++|+||++||+++++.++++.........+...|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57889999999999999999999998887765422112245678999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCC
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 1215 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~ 1215 (2492)
++++|++|++..|+|+|++..++..+++++++++.+++.++++|+|||||+|||+|+.|+.. .+.+||+.+.||+.
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~----~~~~~v~~~~wP~~ 156 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE----KKEESVFLEDWPEL 156 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc----CCCCCeeccCCCCC
Confidence 98999999999999999865555556788999999999999999999999999999999752 12368999999998
Q ss_pred cccCCchHHHHHHHHHHHHHHHH
Q psy15223 1216 PKVYNSKKLLYKYMILKKIRSKV 1238 (2492)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~lr~~v 1238 (2492)
++...+.+++..++.++++|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 157 PEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred cccccCHHHHHHHHHHHHHHHhh
Confidence 77667778889999999888765
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-23 Score=212.87 Aligned_cols=105 Identities=44% Similarity=0.727 Sum_probs=96.3
Q ss_pred CCCcccccccccccCCcceeeeeeeC-CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHh
Q psy15223 50 LSPIPHRAKLALIAGEVPVGAVLVKN-NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAM 128 (2492)
Q Consensus 50 M~~a~~~a~~~~~~~~~pvGaviv~~-~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~m 128 (2492)
|+.++++|+++...++.|||||||++ |+||+.|+|....++|++.|||++||+++.++++...+. |++||||+|||+|
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~-~~~ly~t~EPC~m 79 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLS-GCTLYTTLEPCPM 79 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccC-CeEEEEeCCChHH
Confidence 56778899999999999999999965 999999999999889999999999999999998776665 9999999999999
Q ss_pred HHHHHHHhCCceEEEecCCCCCCccch
Q psy15223 129 CAGAIIHVRLGEIIYGTPSFKTGACGS 155 (2492)
Q Consensus 129 C~~ai~~~gi~rvv~g~~~~~~~~~g~ 155 (2492)
|++||+|+||+||||+..+++.|+.+.
T Consensus 80 C~~ai~~~gi~~Vvy~~~~~~~g~~~~ 106 (109)
T cd01285 80 CAGALLWARIKRVVYGASDPKLGGIGF 106 (109)
T ss_pred HHHHHHHHCCCEEEEEecCCccccccc
Confidence 999999999999999999998776554
|
These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei |
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=224.61 Aligned_cols=179 Identities=43% Similarity=0.780 Sum_probs=153.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
++.+.++++.+.++|+||++||+++++.++++.............|+|+++++++++++++++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56788999999999999999999988877654321111235678999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCC
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKL 2365 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~ 2365 (2492)
++++|++||+.+|+|+|+...++..+.+++.+++.+++.++++|+|||||+|||+|+.|++. .+.+||+.++||+.
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~----~~~~~v~~~~wP~~ 156 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE----KKEESVFLEDWPEL 156 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc----CCCCCeeccCCCCC
Confidence 98999999999999999764444456678899999999999999999999999999999752 12368999999998
Q ss_pred CccCCCHHHHHHHHHHHHHHHHH
Q psy15223 2366 PKVYNSKKLLYKYMILKKIRSKV 2388 (2492)
Q Consensus 2366 ~~~~~~~~l~~~~~~~~~~r~~v 2388 (2492)
+..+.+++++..|+.++++|..|
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 157 PEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred cccccCHHHHHHHHHHHHHHHhh
Confidence 88788888899999998888765
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-23 Score=240.12 Aligned_cols=126 Identities=20% Similarity=0.232 Sum_probs=98.2
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 527 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~ 527 (2492)
++-+.+++-|.+| ..+|||||++++.-|++.||.+..||+|.|+.+.-.-.=.|-.+|.+. +.++.+ +
T Consensus 7 ~~v~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~---g~~~~e-------l 74 (300)
T PF01406_consen 7 GKVRMYVCGPTVY--DYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREE---GVSPQE-------L 74 (300)
T ss_dssp TEEEEEEEEEBTT--S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHT---TS-HHH-------H
T ss_pred CeEEEEcCCCCCC--CCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhc---cCCHHH-------H
Confidence 3345666666666 899999999999999999999999999999999998888888888876 778777 8
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeC-cccccCCC
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGL-KPVNWCFD 588 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~-~pv~w~p~ 588 (2492)
+.++.+.+.+++++|||.-...-+. --++...++....+|.++|+.|... .-||++.+
T Consensus 75 a~~y~~~f~~dm~~Lnv~~p~~~pr---ate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 75 ARRYEEEFFEDMKALNVLPPDHYPR---ATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHHHHTT----SEEEE---GGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHHHHcCCCCCccccc---hhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 8889999999999999965322233 3478889999999999999999998 88887765
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=236.17 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=98.0
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
++-+.|++-|.+| ..+||||+++++.-|++.||.+..||+|.|+++.-.--=.|-.+|.+. ++++.+ +
T Consensus 7 ~~v~~Y~CGPTVY--d~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~---g~~~~e-------l 74 (300)
T PF01406_consen 7 GKVRMYVCGPTVY--DYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREE---GVSPQE-------L 74 (300)
T ss_dssp TEEEEEEEEEBTT--S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHT---TS-HHH-------H
T ss_pred CeEEEEcCCCCCC--CCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhc---cCCHHH-------H
Confidence 3445677665555 889999999999999999999999999999999999988998888876 778776 7
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeC-cccccCCC
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGL-KPVNWCFD 1738 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~-~~v~wcp~ 1738 (2492)
+.++.+.+.+++++||+.-...-+..| ++...+...-.+|.++|+.|... ..||++..
T Consensus 75 a~~y~~~f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 75 ARRYEEEFFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 888999999999999996543333333 68888999999999999999998 88887764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=224.13 Aligned_cols=178 Identities=17% Similarity=0.323 Sum_probs=145.2
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHhh--cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q psy15223 1056 ISNEILNRVVE-TYRRIRNTLRFLLA--NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 1132 (2492)
Q Consensus 1056 fs~~~l~~~~~-~~~kl~n~~rf~l~--~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~ 1132 (2492)
||++.+++..+ +++||||++||+++ ++.++++.....+...+...|+|+++++++++++++++|++|+|++|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 57888888888 99999999999987 5556654422222344678999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccC
Q psy15223 1133 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 1212 (2492)
Q Consensus 1133 ~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~w 1212 (2492)
.|++ .++++|++.+|+++|+.. ++..+++++.++..++..++++|+||+||+|||+|+++++.. ....+||+.+.|
T Consensus 81 ~f~~-~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~--~~~~~si~~~~w 156 (183)
T cd07961 81 EFID-ELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRREL--GDAPESVHLLDW 156 (183)
T ss_pred HHHH-HhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc--CCCCCceeeecC
Confidence 9997 566999999999999865 345677899999999999999999999999999999997420 011368999999
Q ss_pred CCCcccCCchHHHHHHHHHHHHHHH
Q psy15223 1213 YKLPKVYNSKKLLYKYMILKKIRSK 1237 (2492)
Q Consensus 1213 p~~~~~~~~~~~~~~~~~~~~lr~~ 1237 (2492)
|..++.+.+..++..++.+.++.+.
T Consensus 157 P~~~~~~~~~~~~~~~~~l~~~i~~ 181 (183)
T cd07961 157 PEVDESLIDEELEEAMELVREIVEL 181 (183)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHh
Confidence 9977655566666777777655443
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >PHA02588 cd deoxycytidylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-22 Score=222.30 Aligned_cols=130 Identities=25% Similarity=0.322 Sum_probs=106.6
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccC--------------------------------CCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITR--------------------------------NDP 92 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~--------------------------------~~~ 92 (2492)
+|..||..|..+|++| ..++.|||||||++|+||++|+|+.+.+ .++
T Consensus 2 ~d~~fM~~A~~~A~~s-~~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 2 KDSTYLQIAYLVSQES-KCVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred CHHHHHHHHHHHHHhc-CCCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 4667999999999998 5678999999999999999999998754 367
Q ss_pred CCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEe
Q psy15223 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILT 172 (2492)
Q Consensus 93 ~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 172 (2492)
+.|||++||++|.+.. ..+ .|+|||||+|||+||++||+++||+||||+...+.. .+.+..+|++.|++. .
T Consensus 81 ~~HAE~nAi~~a~~~~--~~~-~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~--~~~~~~~L~~~Gi~v----~ 151 (168)
T PHA02588 81 EIHAELNAILFAARNG--ISI-EGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRN--GPGWDDILRKSGIEV----I 151 (168)
T ss_pred CccHHHHHHHHHhhcC--CCC-CCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCC--cHHHHHHHHHCCCEE----E
Confidence 8899999999998753 234 499999999999999999999999999999874333 234688999999973 2
Q ss_pred ccccHHHHHHHHH
Q psy15223 173 GGVMQKQCEKLLK 185 (2492)
Q Consensus 173 ~gv~~~e~~~l~~ 185 (2492)
.+..+++.+++.
T Consensus 152 -~~~~~~~~~~~~ 163 (168)
T PHA02588 152 -QIPKEELNKLNW 163 (168)
T ss_pred -EeCHHHHHhhhh
Confidence 245677666653
|
|
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=222.91 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=150.3
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCCC
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 2201 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~~ 2201 (2492)
.|+|-+|.|+.|+|+.+.++++.+.+...+|-+.++|...|..+|+|||||++|+|++.+++++|.+++||++++++.|.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr 338 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWR 338 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHH
Q psy15223 2202 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSK 2280 (2492)
Q Consensus 2202 ~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~~~ 2280 (2492)
++++|+...+..+.+....+.|++..+........ +...+++.+..++..+......|..++ ++++...++..
T Consensus 339 ~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 339 SPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 99999999999888887777777765443322211 134677889999999999999999987 69999999999
Q ss_pred HHHHHHhhhhhhHHHhhhhh
Q psy15223 2281 LQIYCSEDLGSFYLDILKDR 2300 (2492)
Q Consensus 2281 l~~f~~~~ls~~Yle~~K~~ 2300 (2492)
+.+++ ..+|.|+.....+
T Consensus 413 ~~~lv--s~~N~~i~~~~~~ 430 (586)
T KOG2007|consen 413 IRELV--SQGNAYIRESGER 430 (586)
T ss_pred HHHHH--hhhhHHHHHhccc
Confidence 99999 5689999876643
|
|
| >cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-22 Score=205.70 Aligned_cols=106 Identities=26% Similarity=0.425 Sum_probs=95.7
Q ss_pred CCCcccccccc--cccCCcceeeeeeeC-CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCCh
Q psy15223 50 LSPIPHRAKLA--LIAGEVPVGAVLVKN-NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126 (2492)
Q Consensus 50 M~~a~~~a~~~--~~~~~~pvGaviv~~-~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC 126 (2492)
|..|+++|+++ ...++.|||||||++ |+||++|+|+.. ++.|||++||++|.++ .+ +|+|||||+|||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~a~~~----~l-~g~tly~TlEPC 71 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALASAGEK----LA-RGATLYVTLEPC 71 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHHHhhc----CC-CCeEEEEeCCCC
Confidence 56788899998 788999999999965 999999999875 7999999999999985 34 489999999999
Q ss_pred ------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcC
Q psy15223 127 ------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKK 164 (2492)
Q Consensus 127 ------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~ 164 (2492)
|||++||+|+||+|||||..+|+.+..++++.++++.|
T Consensus 72 ~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 72 SHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred CCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 89999999999999999999999988888999888764
|
Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain. |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-21 Score=219.28 Aligned_cols=174 Identities=17% Similarity=0.330 Sum_probs=142.3
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHh--cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy15223 2206 ISNEILNRVVE-TYRRIRNTLRFLLA--NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQ 2282 (2492)
Q Consensus 2206 fs~~~l~~~~~-~~~kl~n~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~ 2282 (2492)
||++.+++..+ +++||||++||+++ ++.++.+.....+...+...|+|+++++++++++++++|++|+|+.|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 67888988888 99999999999986 5555544321122234678999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccC
Q psy15223 2283 IYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLH 2362 (2492)
Q Consensus 2283 ~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~w 2362 (2492)
.|++ .++++|++.+|+++|+.. ++..+++++.++.+++..++++|+|||||+|||+|+++++.. ..+.+||+.++|
T Consensus 81 ~f~~-~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~--~~~~~si~~~~w 156 (183)
T cd07961 81 EFID-ELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRREL--GDAPESVHLLDW 156 (183)
T ss_pred HHHH-HhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc--CCCCCceeeecC
Confidence 9997 566999999999999865 334567789999999999999999999999999999997520 012358999999
Q ss_pred CCCCccCCCHHHHHHHHHHHH
Q psy15223 2363 YKLPKVYNSKKLLYKYMILKK 2383 (2492)
Q Consensus 2363 P~~~~~~~~~~l~~~~~~~~~ 2383 (2492)
|+.++.+.++.++..++.+.+
T Consensus 157 P~~~~~~~~~~~~~~~~~l~~ 177 (183)
T cd07961 157 PEVDESLIDEELEEAMELVRE 177 (183)
T ss_pred CCCcccccCHHHHHHHHHHHH
Confidence 998776767777766666654
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >KOG1018|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-22 Score=217.98 Aligned_cols=154 Identities=36% Similarity=0.582 Sum_probs=134.3
Q ss_pred cccccCCCCCCCcccccccccccC-Ccceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHH---HHHhccCcccCC
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIAG-EVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRM---ASKLLNNYRFSK 115 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~~-~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~---a~~~~~~~~l~~ 115 (2492)
.+.+.|..||..|.++|.++.+.+ +.|||||+|+ +|+|++.|+|.+....|+|.|||+.||+. .++.+..+.+.
T Consensus 6 ~~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls- 84 (169)
T KOG1018|consen 6 ELSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLS- 84 (169)
T ss_pred hcccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceecc-
Confidence 455678899999999999999999 9999999998 99999999999989999999999999999 88888777776
Q ss_pred CeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhh--cCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQE--KKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 116 ~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~--~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
++|+|||+|||+||++||.++||++||||+.+++.+..+........ +.+.+.+....|+..+++..++..|+-+.++
T Consensus 85 ~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~n~ 164 (169)
T KOG1018|consen 85 ETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRDNP 164 (169)
T ss_pred CCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhcccccc
Confidence 89999999999999999999999999999999999887665544332 2455667788899999998999999877555
Q ss_pred cc
Q psy15223 194 FV 195 (2492)
Q Consensus 194 ~~ 195 (2492)
..
T Consensus 165 ~~ 166 (169)
T KOG1018|consen 165 KD 166 (169)
T ss_pred CC
Confidence 43
|
|
| >TIGR02571 ComEB ComE operon protein 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-22 Score=214.07 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=100.8
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCC---------------CCCCcHHHHHHHHHHHhc
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRN---------------DPTAHAEIIALRMASKLL 108 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~---------------~~~~HaE~~ai~~a~~~~ 108 (2492)
..|..||..|..+|+++ ..++.|||||||+||+||++|+|+...+. +++.|||++||++|++..
T Consensus 4 ~~d~~fM~~A~~~A~rs-~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~ 82 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRS-TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFG 82 (151)
T ss_pred cHHHHHHHHHHHHHHhc-CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcC
Confidence 35667999999999988 67789999999999999999999987654 578999999999998643
Q ss_pred cCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCce
Q psy15223 109 NNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHH 168 (2492)
Q Consensus 109 ~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~ 168 (2492)
..+ +|++||||+|||+||+++|+++||+||||+..+++.. .+..++++.|+..+
T Consensus 83 --~~l-~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~---~~~~~l~~~gi~v~ 136 (151)
T TIGR02571 83 --VST-EGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP---YAIELFEQAGVELK 136 (151)
T ss_pred --CCc-CCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH---HHHHHHHHCCCEEE
Confidence 244 4999999999999999999999999999997654432 36889999999854
|
This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. |
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=217.96 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=150.9
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYS 1051 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~ 1051 (2492)
.|+|-+|.|+.++|+.+.+.++.+.....+|-++++|-..|..+|+|||||++|+|+..+++++|.+++||++++++.|.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr 338 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWR 338 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHHHHHH
Q psy15223 1052 KDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIVSK 1130 (2492)
Q Consensus 1052 ~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~a~~~ 1130 (2492)
++++||.+.+..+.+....+.|++.-+......- .+.+.+++.+..++..+.....++..++ ++++...+++.
T Consensus 339 ~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~------~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 339 SPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGA------KPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 9999999999988888777877776544333221 1144577888999999999999998886 69999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhc
Q psy15223 1131 LQIYCSEDLGSFYLDILKDRLY 1152 (2492)
Q Consensus 1131 l~~f~~~~ls~~Yl~~~Kdrl~ 1152 (2492)
+.+++ ..+|.|+.....+++
T Consensus 413 ~~~lv--s~~N~~i~~~~~~~~ 432 (586)
T KOG2007|consen 413 IRELV--SQGNAYIRESGERPN 432 (586)
T ss_pred HHHHH--hhhhHHHHHhccccc
Confidence 99999 458999987764443
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=244.52 Aligned_cols=101 Identities=27% Similarity=0.387 Sum_probs=86.1
Q ss_pred Cceeeecccchhh-hhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-cc
Q psy15223 2121 PADLYLEGSDQHR-GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-ST 2198 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r-~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s~ 2198 (2492)
-+|+-..|+||+. .|..+..+...++....|+. ++|||+++.+|+|||||+||+|+|.|+++.||+|++|||++ +.
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4788899999999 88776666555777777765 78999998889999999999999999999999999998887 56
Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHH
Q psy15223 2199 DYSKDLSISNEILNRVVETYRRIRNTL 2225 (2492)
Q Consensus 2199 ~~~~d~~fs~~~l~~~~~~~~kl~n~~ 2225 (2492)
++.++++|+. +.++.+.+.++.+.+
T Consensus 312 ~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 312 KPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 7889999998 777778888777665
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-20 Score=241.20 Aligned_cols=101 Identities=27% Similarity=0.387 Sum_probs=87.1
Q ss_pred Ceeeeecccccch-hhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-cc
Q psy15223 971 PADLYLEGSDQHR-GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-ST 1048 (2492)
Q Consensus 971 p~Dl~~~G~D~~r-gwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~ 1048 (2492)
-+|+-..|+||+. .|..+..+...++....|+. ++|||+++.+|+|||||+||+|+|.|+++.||+|++|||++ +.
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4788899999999 88777766665777778866 78999998889999999999999999999999999998887 56
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHH
Q psy15223 1049 DYSKDLSISNEILNRVVETYRRIRNTL 1075 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~~~~~kl~n~~ 1075 (2492)
.+.+|++|+. +.++.+.|.++.+.+
T Consensus 312 ~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 312 KPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 7889999998 777777888776665
|
|
| >PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=209.70 Aligned_cols=161 Identities=26% Similarity=0.344 Sum_probs=108.0
Q ss_pred cceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHH
Q psy15223 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 1834 (2492)
Q Consensus 1755 ~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 1834 (2492)
|....|.|++.+. +..|.|+||||+||+|.++||++|+++.+..- .--...+.++.
T Consensus 7 S~G~~i~F~i~~~---------------~~~i~vFTTrpdTifGvtfials~~H~lv~~l---------~~~~~~l~~fi 62 (185)
T PF13603_consen 7 SEGAEIDFKIKGS---------------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKL---------AENNPELQEFI 62 (185)
T ss_dssp EEEEEEEEEBTTS---------------SCEEEEEES-GGGGGG--EEEEETTSCHHHHC---------TTTHHHHHHHH
T ss_pred cccEEEEEEecCC---------------CCEEEEEECCcchhhCceEEEECCCCHHHHhh---------hhhhhhHHHHH
Confidence 4567788887542 34899999999999999999999999743211 11122333343
Q ss_pred HHcCCcCc-e----EEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCC
Q psy15223 1835 KKFGFKGN-I----IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 1909 (2492)
Q Consensus 1835 ~~~~~~~~-~----v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~ 1909 (2492)
++...... . ..+..|. +.|.++.||++ ++++||+.++||.+++|||+||++|+|+.+||++|++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t------~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lp 135 (185)
T PF13603_consen 63 EKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLT------GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLP 135 (185)
T ss_dssp HHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTT------S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT--
T ss_pred HHHhcCCHhHhhhhccccccC-cCCCEEECCCC------CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCC
Confidence 33221110 0 0234565 77889999999 99999999999999999999999999999999999999997
Q ss_pred CCCcccccCC-------------CCccccCCCCCCCccHHhhhHHHHHHHH
Q psy15223 1910 DSDIINPVMD-------------DGNFISTLPLFGGMSIWKASKLICSYLK 1947 (2492)
Q Consensus 1910 ~~~~~~~vd~-------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~ 1947 (2492)
..+++.+.+. +|.+. ++++|.||+..+|+++|++.|+
T Consensus 136 i~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 136 IKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp ----EEBSSSS---STTSS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred eeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 7666666553 47776 6789999999999999999985
|
... |
| >cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-20 Score=199.58 Aligned_cols=101 Identities=31% Similarity=0.444 Sum_probs=88.1
Q ss_pred CCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCcc---------------------CCCCCCcHHHHHHHHH
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQIT---------------------RNDPTAHAEIIALRMA 104 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~---------------------~~~~~~HaE~~ai~~a 104 (2492)
|..||..|..+|+++. .++.|||||||++|+||++|+|+..+ ..+++.|||++||++|
T Consensus 1 d~~~m~~A~~~A~~s~-~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRST-CPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcC-CCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 4568999999998874 57899999999999999999999863 4578999999999999
Q ss_pred HHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCC
Q psy15223 105 SKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKT 150 (2492)
Q Consensus 105 ~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~ 150 (2492)
.++ ...+ .|++||||+|||+||+.+|+++||+||||+...+..
T Consensus 80 ~~~--~~~~-~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 80 ARH--GVSL-EGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred hHc--CCCc-CCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 886 2344 489999999999999999999999999999877653
|
Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=192.86 Aligned_cols=153 Identities=24% Similarity=0.452 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhc
Q psy15223 1101 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLIS 1180 (2492)
Q Consensus 1101 D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLa 1180 (2492)
|+|++++++++++++.++|++|+|++|++.+++|++++||++|++.+|+++|++..++. |+ ++.+++.+++.++++|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999998899999999999999999877666 66 99999999999999999
Q ss_pred ccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEE
Q psy15223 1181 PILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEII 1260 (2492)
Q Consensus 1181 PilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~ 1260 (2492)
|||||+|||+|++|... .....+||+.+.||. .....+... + +...++...+.+.++..|+.+.++++.+.+|+
T Consensus 79 P~~P~~aEeiw~~l~~~--~~~~~~si~~~~~p~-~~~~~~~~~-~--~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~ 152 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSE--KLGEKSSIFLEKWPE-DPEFIDEEL-E--EEAFEILKEVVQVIRKIRKEKNIKPKEPLKVV 152 (153)
T ss_dssp TTSHHHHHHHHHHCTTH--HTTSSSSGGGS------GGGGHHHH----HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEE
T ss_pred CCCcHHHHHHHHHhhhc--cCCCCCeeeeCCCCC-ChhhhcHHH-H--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCcc
Confidence 99999999999877321 113358999999997 432223222 0 33444555677888899999999999998887
Q ss_pred E
Q psy15223 1261 L 1261 (2492)
Q Consensus 1261 i 1261 (2492)
|
T Consensus 153 i 153 (153)
T PF08264_consen 153 I 153 (153)
T ss_dssp E
T ss_pred C
Confidence 5
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=192.46 Aligned_cols=153 Identities=24% Similarity=0.452 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2251 DKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2251 D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
|+|++++++++++.++++|++|+|++|++.+++|+++++||+|++.+|+++++...++. ++ ++.+++.+++.++++|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999998899999999999999999866655 66 99999999999999999
Q ss_pred ccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEE
Q psy15223 2331 PILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEII 2410 (2492)
Q Consensus 2331 Pi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~ 2410 (2492)
|||||+|||+|++|... .....+||+.+.||. .....+... + +..+++...+++.++++|+..+++++.+.+|+
T Consensus 79 P~~P~~aEeiw~~l~~~--~~~~~~si~~~~~p~-~~~~~~~~~-~--~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~ 152 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSE--KLGEKSSIFLEKWPE-DPEFIDEEL-E--EEAFEILKEVVQVIRKIRKEKNIKPKEPLKVV 152 (153)
T ss_dssp TTSHHHHHHHHHHCTTH--HTTSSSSGGGS------GGGGHHHH----HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEE
T ss_pred CCCcHHHHHHHHHhhhc--cCCCCCeeeeCCCCC-ChhhhcHHH-H--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCcc
Confidence 99999999999877321 113457999999997 433223222 0 33445556788999999999999999998887
Q ss_pred E
Q psy15223 2411 L 2411 (2492)
Q Consensus 2411 i 2411 (2492)
|
T Consensus 153 i 153 (153)
T PF08264_consen 153 I 153 (153)
T ss_dssp E
T ss_pred C
Confidence 5
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=181.33 Aligned_cols=92 Identities=28% Similarity=0.352 Sum_probs=83.7
Q ss_pred CCCcccccccc-cccCCcceeeeeeeC--CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCCh
Q psy15223 50 LSPIPHRAKLA-LIAGEVPVGAVLVKN--NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126 (2492)
Q Consensus 50 M~~a~~~a~~~-~~~~~~pvGaviv~~--~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC 126 (2492)
|+.|+++|+++ ...++.|||||||++ |++++.|+|......+++.|||++||+++.+... + ++++||||+|||
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~---~-~~~tly~tlePC 76 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGD---T-KGQMLYVALSPC 76 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCC---C-CceEEEEECCCh
Confidence 66778888888 678999999999965 9999999999998899999999999999988653 3 489999999999
Q ss_pred HhHHHHHHHhCCceEEEec
Q psy15223 127 AMCAGAIIHVRLGEIIYGT 145 (2492)
Q Consensus 127 ~mC~~ai~~~gi~rvv~g~ 145 (2492)
+||+++|+|+||++|||+.
T Consensus 77 ~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 77 GACAQLIIELGIKDVIVVL 95 (96)
T ss_pred HHHHHHHHHhCCCCEEEee
Confidence 9999999999999999985
|
The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. |
| >PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-19 Score=188.22 Aligned_cols=100 Identities=40% Similarity=0.675 Sum_probs=88.9
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT 122 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t 122 (2492)
++|+.||..|+.+|+++...++.|||||||+ +|++|+.|+|....+.+++.|||++||.++.+. +...+ +|++||||
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~~~~-~~~~lyvt 79 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GGSSL-KGCTLYVT 79 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TSSGE-TTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-ccccc-cCcccccC
Confidence 4677899999999999998899999999998 899999999999988899999999999999998 44445 48999999
Q ss_pred CCChHhHHHHHHHhCCceEEEec
Q psy15223 123 LEPCAMCAGAIIHVRLGEIIYGT 145 (2492)
Q Consensus 123 ~EPC~mC~~ai~~~gi~rvv~g~ 145 (2492)
+|||+||+++|+++||+|||||.
T Consensus 80 ~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 80 LEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp E--BHHHHHHHHHHTSSEEEEEE
T ss_pred CCCHHHHHHHHHHHCcCeEEEeC
Confidence 99999999999999999999984
|
5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B .... |
| >PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=193.39 Aligned_cols=162 Identities=26% Similarity=0.337 Sum_probs=108.0
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.|.-+.|.|++.+. +..|-|+||||+||+|.++||++|+++.+.--. -....+.++
T Consensus 6 kS~G~~i~F~i~~~---------------~~~i~vFTTrpdTifGvtfials~~H~lv~~l~---------~~~~~l~~f 61 (185)
T PF13603_consen 6 KSEGAEIDFKIKGS---------------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLA---------ENNPELQEF 61 (185)
T ss_dssp EEEEEEEEEEBTTS---------------SCEEEEEES-GGGGGG--EEEEETTSCHHHHCT---------TTHHHHHHH
T ss_pred CcccEEEEEEecCC---------------CCEEEEEECCcchhhCceEEEECCCCHHHHhhh---------hhhhhHHHH
Confidence 45567889988653 347999999999999999999999988332111 112233333
Q ss_pred HHHcCCcCc-E----EEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCC
Q psy15223 684 LKKFGFKGN-I----IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 758 (2492)
Q Consensus 684 ~~~~~~~~~-~----~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l 758 (2492)
.++...... . ..+..|- +.|.++.||++ ++++||+.++||..+.|||+||.+|+|+..||++|++|||
T Consensus 62 i~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t------~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~l 134 (185)
T PF13603_consen 62 IEKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLT------GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNL 134 (185)
T ss_dssp HHHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTT------S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT-
T ss_pred HHHHhcCCHhHhhhhccccccC-cCCCEEECCCC------CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCC
Confidence 333211100 0 0123454 67899999999 8999999999999999999999999999999999999999
Q ss_pred CCCCcccccCC-------------CCcccccCCCCCCcchhhchHHHHHHHH
Q psy15223 759 KDSDIINPVMD-------------DGNFISTLPLFGGMSIWKASKLICSYLK 797 (2492)
Q Consensus 759 ~~~~~~~~vd~-------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~ 797 (2492)
|..+++.|.++ +|.+. +.++|.||+..+|+++|++.|+
T Consensus 135 pi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 135 PIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp -----EEBSSSS---STTSS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred CeeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 87777777764 36666 4579999999999999999985
|
... |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=210.78 Aligned_cols=198 Identities=16% Similarity=0.098 Sum_probs=140.5
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcc----------------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQ---------------------- 1030 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~---------------------- 1030 (2492)
-+|+.|.||+ +||..+.....++.- .+.+++..|||.+ ..|.|||||+||+|+|+
T Consensus 330 iI~V~g~~q~-~h~~~v~~~l~~lG~-~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~ 406 (566)
T TIGR00456 330 MIYVWGSDHH-LHIAQFFAILEKLGF-YKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEE 406 (566)
T ss_pred EEEEecCcHH-HHHHHHHHHHHHcCC-CCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccH
Confidence 3788899999 788888776666643 3446788888876 46789999999999998
Q ss_pred -hhhhhcChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHH
Q psy15223 1031 -KLCNLFGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEID 1101 (2492)
Q Consensus 1031 -~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D 1101 (2492)
++++.+|+|++||++++....+|++|+++.+.+. ...+.|+.+.++.... ... +.. ..+.....+.+
T Consensus 407 ~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~--~~~-~~~-~~~~~~~~~~e 482 (566)
T TIGR00456 407 EDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADI--DGE-KLI-ADDFSLLEEKE 482 (566)
T ss_pred HHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccc--ccc-ccc-ccccCCCCHHH
Confidence 7788899999999999988889999999875332 2356666666664311 111 000 00111235567
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC--ChHHHHHHHHHHHHHHHHHHHHh
Q psy15223 1102 KYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK--NSHARRSAQTSIWHINQSLLRLI 1179 (2492)
Q Consensus 1102 ~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~--~~~~r~sa~~~L~~il~~l~~lL 1179 (2492)
+.++..+..+...+.+++++++++.+++.+++++ .. .|.|++.. +...... -...|.........+|...+.||
T Consensus 483 ~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La-~~-~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lL 558 (566)
T TIGR00456 483 KELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA-SL-FSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGLQLL 558 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HH-HHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999 34 45565543 2222111 12456666666677777777777
Q ss_pred cc
Q psy15223 1180 SP 1181 (2492)
Q Consensus 1180 aP 1181 (2492)
.-
T Consensus 559 GI 560 (566)
T TIGR00456 559 GI 560 (566)
T ss_pred CC
Confidence 53
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=202.62 Aligned_cols=197 Identities=17% Similarity=0.125 Sum_probs=139.0
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcc----------------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQ---------------------- 2180 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~---------------------- 2180 (2492)
-+|+.|.||+ +||..+.....++.- .+.+++..|||.+ .+|.|||||+||+|+|.
T Consensus 330 iI~V~g~~q~-~h~~~v~~~l~~lG~-~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~ 406 (566)
T TIGR00456 330 MIYVWGSDHH-LHIAQFFAILEKLGF-YKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEE 406 (566)
T ss_pred EEEEecCcHH-HHHHHHHHHHHHcCC-CCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccH
Confidence 3788899999 688887766666543 3446788888766 45789999999999998
Q ss_pred -hhhhccChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHH
Q psy15223 2181 -KLCNLFGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEID 2251 (2492)
Q Consensus 2181 -~ii~~yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D 2251 (2492)
++++.+|+|++||++++....+|.+|+++.+.+ ..+.+.|+.+.++.... ...... . .......+.+
T Consensus 407 ~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~--~~~~~~-~-~~~~~~~~~e 482 (566)
T TIGR00456 407 EDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADI--DGEKLI-A-DDFSLLEEKE 482 (566)
T ss_pred HHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccc--cccccc-c-cccCCCCHHH
Confidence 777889999999999998789999999987543 34556666666654311 111000 0 0111235668
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC--hHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2252 KYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN--SHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2252 ~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~--~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
+.++..+..+.+.+..++++++++.++..+++++. ..|.|++.. +....... ...|.........+|+..+.+|
T Consensus 483 ~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~--~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lL 558 (566)
T TIGR00456 483 KELLKLLLQFPDVLEEAAEELEPHVLTNYLYELAS--LFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGLQLL 558 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH--HHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999983 456666543 33222111 2345555556666777777776
Q ss_pred h
Q psy15223 2330 S 2330 (2492)
Q Consensus 2330 a 2330 (2492)
.
T Consensus 559 G 559 (566)
T TIGR00456 559 G 559 (566)
T ss_pred C
Confidence 4
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-16 Score=199.77 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=79.2
Q ss_pred eeeeecccccch---hhHHHHHHHHHHhcCCCCc--eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 972 ADLYLEGSDQHR---GWFHSSLLTSIILNKSAPY--KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 972 ~Dl~~~G~D~~r---gwf~s~l~~~~~~~~~~p~--k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+|+=..|+||+- +|-.++-+...++.+..|. .--++| ++.+|+|||||+||+|+++|+++.+|+|++||+++
T Consensus 226 V~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~---L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l 302 (515)
T TIGR00467 226 VTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWIS---LKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFA 302 (515)
T ss_pred cccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEE---EcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHh
Confidence 444455888873 2555544444466666663 444444 77899999999999999999999999999999999
Q ss_pred ccCcccccccCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1047 STDYSKDLSISNEILNRVVETYRRIRNTLRF 1077 (2492)
Q Consensus 1047 s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf 1077 (2492)
+.++.++++|+.+.+ ++.+.|.++.+.+..
T Consensus 303 ~~~~~~~ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 303 RTKPEFHISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred ccCCCCCCcCCHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999998 888888888776644
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-17 Score=173.23 Aligned_cols=121 Identities=27% Similarity=0.351 Sum_probs=101.3
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCC----------------------CCcHHHHHH
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDP----------------------TAHAEIIAL 101 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~----------------------~~HaE~~ai 101 (2492)
..|+.||..|...|.+| .+++..||||||+||+||++|||+.+++.+. +.|||+|||
T Consensus 7 ~wdeyfm~~A~l~a~Rs-tc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAi 85 (164)
T COG2131 7 MWDEYFMAIAELVALRS-TCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAI 85 (164)
T ss_pred HHHHHHHHHHHHHHHHc-cCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHH
Confidence 36888998888777776 7888999999999999999999998876532 579999999
Q ss_pred HHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCce
Q psy15223 102 RMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHH 168 (2492)
Q Consensus 102 ~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~ 168 (2492)
.+|++.+-.. .|+++|||+.||.+|+..|+++||++|||+...++....-....++.++|+...
T Consensus 86 l~aa~~g~~~---~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~ 149 (164)
T COG2131 86 LQAARHGVGL---EGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVR 149 (164)
T ss_pred HHHHhcCCCC---CCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEE
Confidence 9999976432 489999999999999999999999999999988776422335677888888643
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-14 Score=182.67 Aligned_cols=200 Identities=21% Similarity=0.220 Sum_probs=143.3
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe---eEEEcCCCccccccCCCccCcchhhhhcC------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNLFG------------ 1037 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h---G~vld~~G~KMSKS~GN~i~p~~ii~~yG------------ 1037 (2492)
-+|+.|.||+ +||..+.....++.- .+-+.++.| |++.+++|.||||..||+|+.+|+++.-+
T Consensus 337 ~IyV~gadq~-~~~~ql~~~l~~~g~-~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 337 LIYVLGADQH-GHFKQLKAVLELLGY-GPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred EEEEeCCcch-hHHHHHHHHHHHhcC-CCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhh
Confidence 3788899999 677666554444433 333334444 56678899999999999999999999888
Q ss_pred ----------hhhHHHHhhccCcccccccCHHHHHHHH--------HHHHHHHHHHHHHhhcCCCCCCCcccccccccch
Q psy15223 1038 ----------AEILRLWVASTDYSKDLSISNEILNRVV--------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 1099 (2492)
Q Consensus 1038 ----------aD~lRl~l~s~~~~~d~~fs~~~l~~~~--------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~ 1099 (2492)
.|++||++++.+..+++.|+++.+.... -++.|+.+++|-.-..-.++..... .....+
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~---~~l~~~ 491 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEAD---ALLTEL 491 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccc---hhccCh
Confidence 9999999999999999999999875432 2677899988876443111111000 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCC--hHHHHHHHHHHHHHHHHHHH
Q psy15223 1100 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN--SHARRSAQTSIWHINQSLLR 1177 (2492)
Q Consensus 1100 ~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~--~~~r~sa~~~L~~il~~l~~ 1177 (2492)
.++.++.+|.++..-+.++.+++++|..+..++++. ..|++||=. -+....+.. ...|.........+|+..+.
T Consensus 492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~---~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~ 567 (577)
T COG0018 492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA---CPVLGAENEELRAARLALVKATRQVLKNGLD 567 (577)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhh---CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999999 689999943 233332221 33555666666677777777
Q ss_pred Hhcc
Q psy15223 1178 LISP 1181 (2492)
Q Consensus 1178 lLaP 1181 (2492)
||.-
T Consensus 568 LLGI 571 (577)
T COG0018 568 LLGI 571 (577)
T ss_pred hcCC
Confidence 7754
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=194.93 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=80.4
Q ss_pred Cceeeecccchhh---hhHHHHHHHHHHhcCCccccEEEEeeeE-EcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2121 PADLYLEGSDQHR---GWFHSSLLTSIILNKSAPYKALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r---~wf~~~l~~~~~l~~~~pfk~v~~hG~v-ld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.+|+=..|+||+- +|..++-+...++.+..|.. +..+|+ ++.+|+|||||+||+|++.|+++.+|+|++||+++
T Consensus 225 gV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~--~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l 302 (515)
T TIGR00467 225 KVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVT--VQYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFA 302 (515)
T ss_pred CcccccCCCCccCccCCchhHHHHHHHHhCCCCCcC--cEEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHh
Confidence 4566666888873 25555444434565665532 334444 77889999999999999999999999999999999
Q ss_pred ccCCCCcccccHHHHHHHHHHHHHHHHHHHH
Q psy15223 2197 STDYSKDLSISNEILNRVVETYRRIRNTLRF 2227 (2492)
Q Consensus 2197 s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~ 2227 (2492)
+.++.++++|+.+.+ ++.+.+.++.+.+..
T Consensus 303 ~~~~~~~ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 303 RTKPEFHISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred ccCCCCCCcCCHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999998 888888888776643
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=181.94 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=141.5
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCC-ceEEEEeeEEEcCCCccccccCCCccCcchhhhh----------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL---------------- 1035 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p-~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~---------------- 1035 (2492)
-+|+.|.||+ +||..+.....++.-..+ --.++..|+|. .+|+||||.+||+|+.+|++++
T Consensus 327 ~IyV~g~dq~-~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 327 ALYVVGPEQS-LHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEEeCCcHH-HHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 3788899999 788888877776653311 24567888887 6888999999999999999996
Q ss_pred ---------cChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCcccccccccc
Q psy15223 1036 ---------FGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMV 1098 (2492)
Q Consensus 1036 ---------yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~ 1098 (2492)
.|.|++||++++.+..+++.|+++.+-.. .-++.|+.+++|-.-. ++. . ....-..
T Consensus 405 ~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~---~~~--~--~~~~l~~ 477 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV---EFE--T--CTFALKD 477 (562)
T ss_pred ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCC---Ccc--c--cccCCCC
Confidence 77999999999999999999999985221 2367788888887521 111 0 1111124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHH
Q psy15223 1099 EIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 1178 (2492)
Q Consensus 1099 ~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~l 1178 (2492)
+.++-++..+..+...+.+++++++++.+++.+++++ ..++.+| +.. ..+ .++.....|.....+...+|...+.|
T Consensus 478 ~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA-~~fN~fy-~~~-~Vl-~~~~~~~~RL~L~~a~~~vL~~gL~L 553 (562)
T PRK12451 478 DYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA-QSFNKYY-GNV-RIL-EESAEKDSRLALVYAVTVVLKEGLRL 553 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHH-HhC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567788999999999999999999999999999999 4555555 532 222 22112345555566666777777777
Q ss_pred hc
Q psy15223 1179 IS 1180 (2492)
Q Consensus 1179 La 1180 (2492)
|.
T Consensus 554 LG 555 (562)
T PRK12451 554 LG 555 (562)
T ss_pred cC
Confidence 64
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-13 Score=174.28 Aligned_cols=200 Identities=21% Similarity=0.213 Sum_probs=143.4
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEE---eeeEEcCCCceeeeccCCccCcchhhhccC------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLT---HGFVVDSKGKKMSKSKGNIIKPQKLCNLFG------------ 2187 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~---hG~vld~~G~KMSKS~GNvi~p~~ii~~yG------------ 2187 (2492)
-+|+.|.||+ +||..+.....++.-. +-+.++. .|++.+.+|.||||..||+|+.+|+++.-+
T Consensus 337 ~IyV~gadq~-~~~~ql~~~l~~~g~~-~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 337 LIYVLGADQH-GHFKQLKAVLELLGYG-PDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred EEEEeCCcch-hHHHHHHHHHHHhcCC-CccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhh
Confidence 3788899999 5666655443443332 3333433 456778899999999999999999999888
Q ss_pred ----------hhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccch
Q psy15223 2188 ----------AEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVE 2249 (2492)
Q Consensus 2188 ----------aD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~ 2249 (2492)
.|++||++++.+..+++.|+++.+.. ++.++.|+.+++|.....-.++....+ .....+
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~---~~l~~~ 491 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEAD---ALLTEL 491 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccc---hhccCh
Confidence 99999999999999999999998754 566788999998876433111111000 011223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC--hHHHHHHHHHHHHHHHHHHH
Q psy15223 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN--SHARRSAQTSIWHINQSLLR 2327 (2492)
Q Consensus 2250 ~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~--~~~r~~~~~~l~~il~~l~~ 2327 (2492)
.++.++.+|.++..-+..+.+++++|..+..++++. ..|++||=. -+....... ...|.........+|+..+.
T Consensus 492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~---~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~ 567 (577)
T COG0018 492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA---CPVLGAENEELRAARLALVKATRQVLKNGLD 567 (577)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhh---CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999 689999943 233332221 23455555556667777777
Q ss_pred HHhc
Q psy15223 2328 LISP 2331 (2492)
Q Consensus 2328 lLaP 2331 (2492)
||.-
T Consensus 568 LLGI 571 (577)
T COG0018 568 LLGI 571 (577)
T ss_pred hcCC
Confidence 7643
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-13 Score=175.97 Aligned_cols=200 Identities=11% Similarity=0.109 Sum_probs=148.3
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCC----ceEEEEeeEEEcCCCccccccCCCccCcchhhh--------------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAP----YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-------------- 1034 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p----~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~-------------- 1034 (2492)
-+|+.|.||+ +||..+.....++.-..+ --.++..|||+..+|+||||..||+|+.+|+++
T Consensus 330 ~IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~ 408 (576)
T PLN02286 330 IIYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408 (576)
T ss_pred EEEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence 4788899999 788888777766653212 245788999977889999999999999999998
Q ss_pred ---------------hcChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCccc
Q psy15223 1035 ---------------LFGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINI 1091 (2492)
Q Consensus 1035 ---------------~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~ 1091 (2492)
..|.|++||++++.+..++++|+++.+-.. .-++.|+.+++|..-....++...
T Consensus 409 ~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~--- 485 (576)
T PLN02286 409 KDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKT--- 485 (576)
T ss_pred CccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCcccccccc---
Confidence 357899999999999999999999985322 236778888888753211111100
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHH
Q psy15223 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHI 1171 (2492)
Q Consensus 1092 ~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~i 1171 (2492)
.+..-..+.++-++..|..+...+.++.+++++|..+..+++++ ..|+.||=+ .+.... ++...|.........+
T Consensus 486 ~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~---~~Vl~~-~~~~aRL~L~~a~~~v 560 (576)
T PLN02286 486 GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN---CKVNGS-EEETSRLLLCEATAIV 560 (576)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc---CccCCC-CchhHHHHHHHHHHHH
Confidence 01111256677889999999999999999999999999999999 689999943 122221 1225677777777788
Q ss_pred HHHHHHHhcc
Q psy15223 1172 NQSLLRLISP 1181 (2492)
Q Consensus 1172 l~~l~~lLaP 1181 (2492)
|...+.||.-
T Consensus 561 L~~gL~LLGI 570 (576)
T PLN02286 561 MRKCFHLLGI 570 (576)
T ss_pred HHHHHHhcCC
Confidence 8888888753
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-12 Score=169.43 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=140.3
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCcc-ccEEEEeeeEEcCCCceeeeccCCccCcchhhhc----------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL---------------- 2185 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~p-fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~---------------- 2185 (2492)
-+|+.|.||+ +||..+.....++.-..+ --.++..|+|. .+|+||||.+||+|+.+|++++
T Consensus 327 ~IyV~g~dq~-~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 327 ALYVVGPEQS-LHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEEeCCcHH-HHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 3788899999 788887776666642211 23468888887 6888999999999999999996
Q ss_pred ---------cChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCcccccccccc
Q psy15223 2186 ---------FGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMV 2248 (2492)
Q Consensus 2186 ---------yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~ 2248 (2492)
.|.|++||++++.+..++++|+++.+-. ++..+.|+.+++|.... ++. . ....-..
T Consensus 405 ~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~---~~~--~--~~~~l~~ 477 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESV---EFE--T--CTFALKD 477 (562)
T ss_pred ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCC---Ccc--c--cccCCCC
Confidence 7799999999999999999999998522 45677788888887521 111 0 1111125
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHH
Q psy15223 2249 EIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 2328 (2492)
Q Consensus 2249 ~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~l 2328 (2492)
+.++.++..+..+.+.+.+++++++++.++..+++++ ..++ .|++.. ..+ .+......|.........+|...+.|
T Consensus 478 ~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA-~~fN-~fy~~~-~Vl-~~~~~~~~RL~L~~a~~~vL~~gL~L 553 (562)
T PRK12451 478 DYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA-QSFN-KYYGNV-RIL-EESAEKDSRLALVYAVTVVLKEGLRL 553 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHH-HHHHhC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678889999999999999999999999999999999 3454 455532 222 21111234444555556677777776
Q ss_pred Hh
Q psy15223 2329 IS 2330 (2492)
Q Consensus 2329 La 2330 (2492)
|.
T Consensus 554 LG 555 (562)
T PRK12451 554 LG 555 (562)
T ss_pred cC
Confidence 63
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-11 Score=162.96 Aligned_cols=199 Identities=11% Similarity=0.112 Sum_probs=147.2
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCcc----ccEEEEeeeEEcCCCceeeeccCCccCcchhhh--------------
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAP----YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN-------------- 2184 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~p----fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-------------- 2184 (2492)
-+|+.|.||. +||..+.....++.-..+ --.++..|||+..+|+||||.+||+|+.+|+++
T Consensus 330 ~IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~ 408 (576)
T PLN02286 330 IIYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408 (576)
T ss_pred EEEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999 688887766666642212 235688999977889999999999999999998
Q ss_pred ---------------ccChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCccc
Q psy15223 2185 ---------------LFGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINI 2241 (2492)
Q Consensus 2185 ---------------~yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~ 2241 (2492)
..|.|++||++++.+..++++|+++.+-. ++..+.|+.+++|.......++.. .
T Consensus 409 ~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~---~ 485 (576)
T PLN02286 409 KDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKK---T 485 (576)
T ss_pred CccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccc---c
Confidence 35789999999999999999999998533 456777888888764221111100 0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHH
Q psy15223 2242 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHI 2321 (2492)
Q Consensus 2242 ~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~i 2321 (2492)
.+.....+.++.++..+..+...+..+.++++.+..+..+++++ ..|+.||=+ .+.... ++...|.........+
T Consensus 486 ~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~---~~Vl~~-~~~~aRL~L~~a~~~v 560 (576)
T PLN02286 486 GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN---CKVNGS-EEETSRLLLCEATAIV 560 (576)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc---CccCCC-CchhHHHHHHHHHHHH
Confidence 01112256778899999999999999999999999999999999 689999942 122221 1224566666667778
Q ss_pred HHHHHHHHh
Q psy15223 2322 NQSLLRLIS 2330 (2492)
Q Consensus 2322 l~~l~~lLa 2330 (2492)
|+..+.||.
T Consensus 561 L~~gL~LLG 569 (576)
T PLN02286 561 MRKCFHLLG 569 (576)
T ss_pred HHHHHHhcC
Confidence 888887774
|
|
| >KOG2771|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-15 Score=170.44 Aligned_cols=130 Identities=25% Similarity=0.424 Sum_probs=109.7
Q ss_pred CCCCcccccccccccCCcceeeeeee--CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCc---------------
Q psy15223 49 YLSPIPHRAKLALIAGEVPVGAVLVK--NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNY--------------- 111 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~~~~~pvGaviv~--~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~--------------- 111 (2492)
.|..++..|..+.. ..|+|++|++ ...|++.|...+.. .+|..|+-|++++..++.....
T Consensus 170 i~e~~I~~a~~~~~--~~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~f~~~ 246 (344)
T KOG2771|consen 170 IGELLIAMATDGHA--SRPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLIFNAV 246 (344)
T ss_pred HHHHHHHHHhhhcc--ccCccceecCCccceEEecCCCcccc-cCcHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 45555555554433 3899999995 46777777766544 4899999999999887754433
Q ss_pred ----------------------ccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCcee
Q psy15223 112 ----------------------RFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHT 169 (2492)
Q Consensus 112 ----------------------~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~ 169 (2492)
+||+|+++|+|+|||.||+||++|+||+||+|+..++..|+.|+.+.++..+.+||+|
T Consensus 247 ~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry 326 (344)
T KOG2771|consen 247 SSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRY 326 (344)
T ss_pred cchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcce
Confidence 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHH
Q psy15223 170 ILTGGVMQKQCE 181 (2492)
Q Consensus 170 ~v~~gv~~~e~~ 181 (2492)
+|+.|.+++++.
T Consensus 327 ~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 327 EVFRGYLEEDPI 338 (344)
T ss_pred EEEEeecccccc
Confidence 999999988775
|
|
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-13 Score=144.40 Aligned_cols=135 Identities=20% Similarity=0.443 Sum_probs=112.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
||++.+..+.+.+.|+||+.+|+..+...+++..+ +.......|+++++.++++++++.++|++|+|++|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE--DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67888999999999999999998764343322111 1233467899999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
..+++|+|++..++|... .+..+..+...++.++++.++++|+||+||+||++|+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~--~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYG--EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcC--CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 766999999999998664 233456678889999999999999999999999999864
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=142.97 Aligned_cols=135 Identities=20% Similarity=0.443 Sum_probs=111.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
||++.+..+.+.++|+||+.+|+......+++... +.......|+++++.++++++.+..+|++|+|++|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE--DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67888999999999999999998654333222110 1123456799999999999999999999999999999999999
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
.++++|+|++..++|... .+..+..+...++.++++.++++|+|||||+||++|+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~--~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYG--EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcC--CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 766999999999998653 233345668889999999999999999999999999865
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-13 Score=158.99 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=108.4
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
.++--.+|+|||.+||||++|.++.|+++|+.++.|++|.+..|+|.||.+|+..+++. ..+++++..+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-----------~~~~~~~~~~ 70 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-----------EKWRKLVEES 70 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999754 1277899999
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
++.+++.+++|||.+ +..+.|.+. ...+..++.+|.++|++|+..--+++|+.+
T Consensus 71 ~~~~~~~~~~L~i~~--d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 71 IKADLETYGRLDVRF--DVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHhCCcC--ceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999999986 445566664 888999999999999999988777777543
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-14 Score=152.57 Aligned_cols=78 Identities=38% Similarity=0.842 Sum_probs=72.0
Q ss_pred Ccchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1328 DLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1328 ~LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
..|..|..++ .|||+||+|||+||||+|||||+++++.|++|+.++++.....||++++.+|++++||.+++++||++
T Consensus 74 ~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~~ 152 (152)
T COG0590 74 YRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFRR 152 (152)
T ss_pred CCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHhC
Confidence 4567775555 69999999999999999999999999999999999999998999999999999999999999999864
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-13 Score=156.42 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=107.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
.+|--.+|||||.|||||+++.++.|+++||.++.||+|.+..|+|.+|.+|+..|++. ..+++++..+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-----------~~~~~~~~~~ 70 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-----------EKWRKLVEES 70 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999998654 1267789999
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCC
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~ 1739 (2492)
++.+++.+++||+++| ..+.|++. ...+..++.+|.++|++|...--+++|+.+
T Consensus 71 ~~~~~~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 71 IKADLETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 9999999999999864 45566654 888999999999999999998777777644
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=135.18 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=95.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL-QIY 2284 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l-~~f 2284 (2492)
|+.+.++.+.+.++|+++......+. ..+. ..+...|+|+++++++++++++++|++|+|++|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~---~~~~------~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET---EGEL------EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc---cCCc------cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67788888889999998887653221 1111 2346789999999999999999999999999999997 777
Q ss_pred HHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2285 CSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2285 ~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
. +.+++|++..|++ .++.++.++++.++++|+||+||+|||+|+.|
T Consensus 72 ~--~~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 6 4688999987764 24568999999999999999999999999865
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PRK10860 tRNA-specific adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-13 Score=151.10 Aligned_cols=79 Identities=38% Similarity=0.785 Sum_probs=71.3
Q ss_pred hhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhccccc
Q psy15223 1331 NRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 1409 (2492)
Q Consensus 1331 ~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~~ 1409 (2492)
.+|..++ .|||+||++||+|+||+|||||++++..|+.|+.++++....++|++++++|++++||.+||+.||+++|..
T Consensus 81 ~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~~ 160 (172)
T PRK10860 81 LDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQE 160 (172)
T ss_pred CCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhhc
Confidence 4564444 699999999999999999999999999999999988888888899999999999999999999999987754
|
|
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-12 Score=133.07 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=94.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKL-QIY 1134 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l-~~f 1134 (2492)
|+.+.++.+.+.++|+++......+. ..+. ..+...|+|++++++++++++.++|++|+|++|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~---~~~~------~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET---EGEL------EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc---cCCc------cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56778888888888888877653221 1111 2356789999999999999999999999999999997 777
Q ss_pred HhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1135 CSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1135 ~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
. +.+++|++..|++ .+++++.++++.++++|+||+||+|||+|+.|
T Consensus 72 ~--~~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 6 3688999988775 24578999999999999999999999999864
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >KOG3127|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-12 Score=141.27 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=94.1
Q ss_pred cccccCCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCC--------------------CCCcHHHH
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRND--------------------PTAHAEII 99 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~--------------------~~~HaE~~ 99 (2492)
.-.+.|..||..|...|.++ +.++..|||+|| .++.||++|||..+.+-+ -+.|||+|
T Consensus 62 ~~lswd~yFM~iA~LsA~RS-kDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~N 140 (230)
T KOG3127|consen 62 GYLSWDDYFMAIAFLSAKRS-KDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEEN 140 (230)
T ss_pred cCccHHHHHHHHHHHHHHhc-cCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHHH
Confidence 34578889999988888877 667889997777 789999999998776431 16799999
Q ss_pred HHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCC-CCccchhhhHHhhcCCCc
Q psy15223 100 ALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFK-TGACGSIINLFQEKKLNH 167 (2492)
Q Consensus 100 ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~-~~~~g~~~~~~~~~~~~~ 167 (2492)
||.++.+.. +. +|++|+|+-||.-|+..|+++||++|+|+....- -...-....++...|++.
T Consensus 141 Ai~~~~~~~----~~-~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~ 204 (230)
T KOG3127|consen 141 AILNKGRER----VG-GCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTL 204 (230)
T ss_pred HHHHhCccc----cC-CceEEEeecchHHHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcce
Confidence 999887653 33 7999999999999999999999999999987631 122233455666666664
|
|
| >cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-12 Score=131.04 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=77.0
Q ss_pred cccccc-cccCCcceeeeeee-CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-----CCChH
Q psy15223 55 HRAKLA-LIAGEVPVGAVLVK-NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-----LEPCA 127 (2492)
Q Consensus 55 ~~a~~~-~~~~~~pvGaviv~-~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-----~EPC~ 127 (2492)
+.+..+ ...++.||||+|+. +|+|+ .|+|......+++.|||++||.++..... .. ..+++|+| +|||.
T Consensus 6 ~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~--~~-~~~~i~vs~~~~~~sPC~ 81 (112)
T cd01283 6 AAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGL--RR-YLVTWAVSDEGGVWSPCG 81 (112)
T ss_pred HHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCC--Cc-eEEEEEEECCCCccCCCH
Confidence 334444 34578999999994 69988 89999988889999999999999988654 22 26899999 99999
Q ss_pred hHHHHHHHhCCceEEEecCCCC
Q psy15223 128 MCAGAIIHVRLGEIIYGTPSFK 149 (2492)
Q Consensus 128 mC~~ai~~~gi~rvv~g~~~~~ 149 (2492)
||+.+|.+.++++|+|...+++
T Consensus 82 ~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 82 ACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred HHHHHHHHhCCCCeEEEEEcCC
Confidence 9999999999999999987755
|
These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes. |
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=128.64 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHH
Q psy15223 2247 MVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLL 2326 (2492)
Q Consensus 2247 ~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~ 2326 (2492)
+...|+|+++++++++++++++|++|+|++|++.+++|+ +++|+|++..|++.+....+....+.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999998 589999999998766532133445667788889999999
Q ss_pred HHHhccchHHHHHHHHHc
Q psy15223 2327 RLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2327 ~lLaPi~P~~aEelw~~L 2344 (2492)
.+|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999865
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-11 Score=127.85 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHH
Q psy15223 1097 MVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLL 1176 (2492)
Q Consensus 1097 ~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~ 1176 (2492)
+...|+|++++++++++++.++|++|+|++|++.+++|+ +++++|++..|++.+....+..+++.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998 589999999999876642233455667788889999999
Q ss_pred HHhcccchhHHHHHHHHc
Q psy15223 1177 RLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1177 ~lLaPilP~~aEeiw~~l 1194 (2492)
.+|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999865
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=122.35 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2206 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2206 fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
|+++.+.++.+.++|++|.++...+.. .+.. +.......|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA---AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc---cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 577888899999999999987643321 1110 0123456899999999999999999999999999999999999
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 2344 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L 2344 (2492)
+ ..|.|++...+ .+.++.++++.++++|+|||||+|||+|+.|
T Consensus 75 ~--~~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 N--ALYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred H--HHHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 4 35677542111 5678999999999999999999999999865
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=121.70 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=92.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1056 ISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1056 fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
|+++.+.++.+.++|++|.+++..+.. .|.. +.+.....|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA---AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc---cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 567788889999999999987643321 1110 0123456899999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
+ . .+.|++..++ .+.++.++++.++++|+|||||+|||+|+.|
T Consensus 75 ~-~-~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 N-A-LYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred H-H-HHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 4 3 5666542211 5688999999999999999999999999865
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >KOG2771|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-11 Score=138.73 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=66.7
Q ss_pred CCCcchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHH
Q psy15223 1326 YPDLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCE 1396 (2492)
Q Consensus 1326 ~~~LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~ 1396 (2492)
.|+||....-++ +|||.||+||++|+||+||+|+.++..+||+|+.+.+|..+++||+|++++|++++++.
T Consensus 267 ~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 267 FPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRYEVFRGYLEEDPI 338 (344)
T ss_pred cceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcceEEEEeecccccc
Confidence 589999995555 79999999999999999999999988899999999999999999999999999998886
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=134.08 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a 507 (2492)
..+++.+|--.-|+|+|+||+||++|-++.|.++|-.+..||+|.-..=....|..+-.-+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~ 77 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLA 77 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHH
Confidence 3457899999999999999999999999999999999999999998888889998876544
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-09 Score=117.98 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=68.2
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
..+.|||||.+|+||++++++.|+++||.|++|++|.++.|+|.+|.++...+.+. +..+++ |+..+++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---~~~~~~-------~~~~~~~~ 71 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---GENAKA-------FVERWIER 71 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---CCCHHH-------HHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999998766 566666 77778888
Q ss_pred HHHHHH
Q psy15223 1685 QKMDFM 1690 (2492)
Q Consensus 1685 ~~~~~~ 1690 (2492)
++++++
T Consensus 72 ~~~~~~ 77 (143)
T cd00802 72 IKEDVE 77 (143)
T ss_pred HHHHHH
Confidence 888776
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-09 Score=117.10 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=67.9
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
..+.|||||.+|+||+++.++.|+++||.|++|++|.++.|+|.+|.+|...+.+. +..+++ ++..+++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---~~~~~~-------~~~~~~~~ 71 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---GENAKA-------FVERWIER 71 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---CCCHHH-------HHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999998775 566766 77777778
Q ss_pred HHHHHH
Q psy15223 535 QKMDFM 540 (2492)
Q Consensus 535 ~~~~~~ 540 (2492)
++++++
T Consensus 72 ~~~~~~ 77 (143)
T cd00802 72 IKEDVE 77 (143)
T ss_pred HHHHHH
Confidence 888776
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=124.36 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 1657 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a 1657 (2492)
..++.+|-..-|+|+|+||+||++|-++.|.++|-.+..||+|.-..=....|..+-.-+
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~ 77 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLA 77 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHH
Confidence 457889999999999999999999999999999999999999999988899998876543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=125.39 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccc---hhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh-
Q psy15223 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG---SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK- 190 (2492)
Q Consensus 115 ~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g---~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~- 190 (2492)
.|.++|+|+|||.-|+.+|+.+||+|||+++ ||++.+.| .+++.|+++|+. | .|++++||..+++.|++.
T Consensus 44 ~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~----V-~~~l~~e~~~l~~~~~~~i 117 (360)
T PRK14719 44 NANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIK----V-NNLIRKEIIKYSRGDLKDI 117 (360)
T ss_pred CCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCE----E-EeehHHHHHHHhHHhhhcc
Confidence 3789999999999999999999999999999 88874333 348999999997 5 479999999998876533
Q ss_pred --------------------ccCcccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEe
Q psy15223 191 --------------------RRNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFN 244 (2492)
Q Consensus 191 --------------------~~~~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~d 244 (2492)
+|||++.|.|..--.++ .. ..|..- |++++++.. |-||.. -|.|.|.-
T Consensus 118 e~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLDGkI--A~--~~G~s~-IT~~~ar~~vh~lRa~-~DAILVG~ 186 (360)
T PRK14719 118 ESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKL--AT--IENDSR-ISGENDLKRVHEIRKD-VDAIMVGI 186 (360)
T ss_pred hhhhhhheeccccccccccCCCCeEEEEEEEcCcCcc--cC--CCCCCC-cCCHHHHHHHHHHHHH-CCEEEECc
Confidence 69999999998332333 21 134444 899999987 999998 46666643
|
|
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-08 Score=102.54 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh
Q psy15223 1059 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 1138 (2492)
Q Consensus 1059 ~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ 1138 (2492)
+.++++.+..+++||+++++.....+..+.. ........|+|++++++++++++.++|++|+|++|++.+++|++.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~- 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKW---DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE- 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc---ChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 4567778889999999999766544322211 001235679999999999999999999999999999999999954
Q ss_pred hhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15223 1139 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 1183 (2492)
Q Consensus 1139 ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPil 1183 (2492)
+ ++|++..|+|.+.. ..+..++.+++.++..++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~----~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTE----ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCc----hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 99999999998865 2344677899999999999999996
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=101.30 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Q psy15223 2209 EILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSED 2288 (2492)
Q Consensus 2209 ~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ 2288 (2492)
+.++++.+..+++||+++++.....+..+... .......|+|++++++++.+.++++|++|+|++|++.+++|++.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~- 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWD---NELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE- 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcC---hhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 45677888999999999987654433222110 01235679999999999999999999999999999999999954
Q ss_pred hhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2289 LGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPIL 2333 (2492)
Q Consensus 2289 ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~ 2333 (2492)
+ |+|++..|+|.+.. .....++.++..+++.++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~----~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTE----ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCc----hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 99999999998764 2344567789999999999999996
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >PF14439 Bd3614-deam: Bd3614-like deaminase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=93.83 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=65.8
Q ss_pred cceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhcc--------------------CcccCCCeEEEEcCC
Q psy15223 66 VPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLN--------------------NYRFSKNYKIYVTLE 124 (2492)
Q Consensus 66 ~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~--------------------~~~l~~~~~ly~t~E 124 (2492)
.-|-|.+| ++|.+++.+.|... .|.+.|||+|.+.-.-...- ...+..|++||||+.
T Consensus 8 R~VvA~lv~~~G~l~daa~NtNa--~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlq 85 (136)
T PF14439_consen 8 RRVVAALVSPDGELVDAAVNTNA--DNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQ 85 (136)
T ss_pred cceeEEEECCCCcEEEeeeccCC--ccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEech
Confidence 34566666 68999999999764 47799999999977665431 124667999999999
Q ss_pred ChHhHHHHHHHhCC-------ceEEEecCCCCC
Q psy15223 125 PCAMCAGAIIHVRL-------GEIIYGTPSFKT 150 (2492)
Q Consensus 125 PC~mC~~ai~~~gi-------~rvv~g~~~~~~ 150 (2492)
||.||++.+.+++- .+|||+..+|-.
T Consensus 86 cCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~ 118 (136)
T PF14439_consen 86 CCKMCAALVCAASDRPGRRVPIDVVYLNEDPGS 118 (136)
T ss_pred hHHHHHHHHHHHhhCcCCccceEEEEecCCCCc
Confidence 99999999999865 789999877543
|
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=109.60 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=77.5
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--------chHHHHHHHHhCcCCC--HHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--------MPIEIQIEKLYGKNLS--PIE 519 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hG--------lpiE~~a~k~~~~~~~--~~e 519 (2492)
.++++-+|. .|+|.+|||++.-.+..|++.|-.|-+|+.|.++.=||.+- +|-....++-+|..++ |.-
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 678888887 89999999999999999999999999999999999999885 5654556666665322 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc
Q psy15223 520 IQNKARALAYEKIEQQKMDFMRLGILG 546 (2492)
Q Consensus 520 ~~~~~~~~a~~~i~~~~~~~~~lGi~~ 546 (2492)
+- -|..|++.+...+.+.+.++|+-.
T Consensus 98 ~G-~~~Sya~hf~~~f~~~l~~~Gi~~ 123 (521)
T COG1384 98 FG-CCDSYAEHFLRPFEEFLDEFGIEV 123 (521)
T ss_pred cc-ccchHHHHHHHHHHHHHHhcCCce
Confidence 11 577899999999999999999844
|
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-07 Score=113.10 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--------hHHHHHHHHHhccCCC--HHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--------MPIEIQIEKLYGKNLS--PIE 1669 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hG--------lPie~~a~k~~~~~~~--~~e 1669 (2492)
.++++-.| =.|||.+|+|.++-.+..|++.|-.|-+|+.|.+++=||..- +|-....++-+|.-++ |.-
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 56766555 479999999999999999999999999999999999999874 5654556666665221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15223 1670 IQNKARALAYEKIEQQKMDFMRLGILG 1696 (2492)
Q Consensus 1670 ~~~~~~~~~~~~i~~~~~~~~~lGi~~ 1696 (2492)
+. -|..|++.+...+.+.+.++|+-.
T Consensus 98 ~G-~~~Sya~hf~~~f~~~l~~~Gi~~ 123 (521)
T COG1384 98 FG-CCDSYAEHFLRPFEEFLDEFGIEV 123 (521)
T ss_pred cc-ccchHHHHHHHHHHHHHHhcCCce
Confidence 11 467899999999999999999844
|
|
| >KOG1018|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-07 Score=105.10 Aligned_cols=77 Identities=25% Similarity=0.524 Sum_probs=65.3
Q ss_pred chhhhhh-ccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc--cCCCceEEEccccHHHHHHHHHHHHhcc
Q psy15223 1330 CNRCFNN-LFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK--KLNHHTILTGGVMQKQCEKLLKSFFIKR 1406 (2492)
Q Consensus 1330 C~RC~~~-v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~--~~~~~~~~~~g~l~~e~~~l~~~f~~~r 1406 (2492)
+..|..+ ..|||+||++||.|+||++||||+.|+++|+.|+........ .+.+.+....|+..+++..+++.||.+.
T Consensus 83 ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~ 162 (169)
T KOG1018|consen 83 LSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRD 162 (169)
T ss_pred ccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhcccc
Confidence 4556444 479999999999999999999999999999999999875543 4556789999999999999999997654
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-07 Score=110.90 Aligned_cols=57 Identities=53% Similarity=0.957 Sum_probs=53.9
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCccccc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRA 57 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~~~a 57 (2492)
|.|+|++++++||||||||.+||+++..+|+++..+|++++++|||+|||.|...+.
T Consensus 160 s~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rG 216 (256)
T COG0084 160 SAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRG 216 (256)
T ss_pred CHHHHHHHHHcCeEEEECceeecCCcHHHHHHHHhCCHhHeEeccCCCCCCCcCCCC
Confidence 679999999999999999999999999999999999999999999999999986554
|
|
| >TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.9e-07 Score=115.57 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=70.7
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|..++ .||| +||++||+|+||+|||||+.++..+..|+....+.. +.++|.+|++++||.+|++.||
T Consensus 58 ~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~v~~~~~~~e~~~l~~~f~ 133 (344)
T TIGR00326 58 KGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQ----AGIEVTFGILKEEAERLNKGFL 133 (344)
T ss_pred CCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhc----CCcEEEeCCCHHHHHHHHHHHH
Confidence 4674454 6999 799999999999999999999988887766555444 3579999999999999999999
Q ss_pred hcccc--ceeEEEEecCCCchH
Q psy15223 1404 IKRRN--FVKNKIQALPENRKF 1423 (2492)
Q Consensus 1404 ~~rr~--~~~~l~~a~~k~~~~ 1423 (2492)
..++. +-+.+..++.=..++
T Consensus 134 ~~~~~~rP~v~~~~a~SLDG~I 155 (344)
T TIGR00326 134 KRMRTGLPYVQLKLAASLDGKI 155 (344)
T ss_pred HhhhcCCCEEEEEEeeCCCCCc
Confidence 87664 447777776644443
|
This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. |
| >PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-07 Score=114.36 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|..++ .||| +||++||+++||+|||||++++..+..|+....+. ++.++|++|++++||.++++.||
T Consensus 64 ~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~----~~gi~v~~~~~~~e~~~l~~~f~ 139 (367)
T PRK10786 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEALNKGFL 139 (367)
T ss_pred CCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHh----cCCcEEEcCCcHHHHHHHHHHHH
Confidence 3564444 6999 89999999999999999999999888876554433 35789999999999999999999
Q ss_pred hccc--cceeEEEEecCCCchH
Q psy15223 1404 IKRR--NFVKNKIQALPENRKF 1423 (2492)
Q Consensus 1404 ~~rr--~~~~~l~~a~~k~~~~ 1423 (2492)
..+| .+.+++-+|+.=..++
T Consensus 140 ~~~~~~rP~V~~k~A~SlDGki 161 (367)
T PRK10786 140 KRMRTGFPYIQLKLGASLDGRT 161 (367)
T ss_pred HHhhcccceEEEEEeecCCCCc
Confidence 7754 5557888887755543
|
|
| >cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-07 Score=95.64 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=39.0
Q ss_pred Ccchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceE
Q psy15223 1328 DLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSII 1372 (2492)
Q Consensus 1328 ~LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~ 1372 (2492)
..|..|..++ .|||+||++||+|+||+||||+.+++..|++|+..
T Consensus 63 ~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~~~~ 108 (109)
T cd01285 63 YLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFLI 108 (109)
T ss_pred CccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCcccccccCC
Confidence 3577775555 69999999999999999999999999999988764
|
These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei |
| >PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=109.90 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=71.6
Q ss_pred hhhhh-hccCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFN-NLFEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~-~v~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|.. +..||| +||++||+++||+|||||+.++..+..|...+.+.. +.++|..|++++||.+|++.||
T Consensus 93 ~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~----~gi~V~~g~~~~e~~~l~~~f~ 168 (380)
T PLN02807 93 ENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRD----AGIEVTVGVEEELCRKLNEAFI 168 (380)
T ss_pred CCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHh----CCCEEEeCcCHHHHHHHHHHHH
Confidence 35644 447999 899999999999999999999988776665554433 3479999999999999999999
Q ss_pred hc--cccceeEEEEecCCCchH
Q psy15223 1404 IK--RRNFVKNKIQALPENRKF 1423 (2492)
Q Consensus 1404 ~~--rr~~~~~l~~a~~k~~~~ 1423 (2492)
.. +..+-+++-.|+.-..++
T Consensus 169 ~~~~~~rP~V~lK~A~SlDGki 190 (380)
T PLN02807 169 HRMLTGKPFVTLRYSMSMNGCL 190 (380)
T ss_pred HHHhhccccEEEEEEEcCCCCe
Confidence 65 456778888888777654
|
|
| >TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=85.93 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=62.3
Q ss_pred ccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE----cCCChH
Q psy15223 54 PHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV----TLEPCA 127 (2492)
Q Consensus 54 ~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~----t~EPC~ 127 (2492)
.+.++++.. -.+.||||+|+ +||+|+. |.|......+++.|||++||.++...... .+. ...++. +..||.
T Consensus 8 ~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~-~i~-~i~vv~~~~~~~sPCG 84 (127)
T TIGR01354 8 QEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYR-KFV-AIAVADSADDPVSPCG 84 (127)
T ss_pred HHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCC-CeE-EEEEEeCCCCCcCccH
Confidence 334444443 24689999999 6799887 99999888999999999999999987543 442 233433 579999
Q ss_pred hHHHHHHHhC
Q psy15223 128 MCAGAIIHVR 137 (2492)
Q Consensus 128 mC~~ai~~~g 137 (2492)
||...|...+
T Consensus 85 ~Crq~l~e~~ 94 (127)
T TIGR01354 85 ACRQVLAEFA 94 (127)
T ss_pred HHHHHHHHhC
Confidence 9999999987
|
This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine. |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.9e-05 Score=97.22 Aligned_cols=104 Identities=29% Similarity=0.397 Sum_probs=54.3
Q ss_pred cCceeeecccchhh--hhHHHHHHHH-HHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHR--GWFHSSLLTS-IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r--~wf~~~l~~~-~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.-+|+=..|+||.- |=+...-..+ ..+...+| .-+.-.|+++..|.|||||+||+++|.|.++-+.+++|||+++
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~ 310 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMA 310 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHH
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHc
Confidence 35777888999986 3334444445 33444444 4566788888888899999999999999999999999999999
Q ss_pred ccCCCCcccccHH-HHHHHHHHHHHHHHHH
Q psy15223 2197 STDYSKDLSISNE-ILNRVVETYRRIRNTL 2225 (2492)
Q Consensus 2197 s~~~~~d~~fs~~-~l~~~~~~~~kl~n~~ 2225 (2492)
.+.+.+..+|+.+ .+-+..+.|.++.+.+
T Consensus 311 ~~~P~~~~~~~~~~~i~~~~Deyd~~~~~y 340 (360)
T PF01921_consen 311 RTKPNKAKDFSFDLVIPRLYDEYDRLERKY 340 (360)
T ss_dssp CS-TTS-EEE--STTHHHHHHHHHHHHHHH
T ss_pred ccCCCcceEeccCcchHHHHHHHHHHHHHh
Confidence 8777776666666 5555666666555443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=96.86 Aligned_cols=54 Identities=28% Similarity=0.533 Sum_probs=50.9
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||+|.++++++..+++++..+|+++++.|||.|||.+..
T Consensus 162 ~~~~a~~~l~~G~~iS~~g~it~~~~~~~~~~~~~ipldriL~ETD~P~l~p~~ 215 (258)
T PRK11449 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNG 215 (258)
T ss_pred CHHHHHHHHHCCCEEEeCccccccCcHHHHHHHHhCChhhEEEecCCCCCCCCC
Confidence 578999999999999999999999999999999999999999999999997653
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.2e-05 Score=93.46 Aligned_cols=103 Identities=29% Similarity=0.394 Sum_probs=53.0
Q ss_pred Ceeeeecccccch--hhHHHHHHHH-HHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 971 PADLYLEGSDQHR--GWFHSSLLTS-IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 971 p~Dl~~~G~D~~r--gwf~s~l~~~-~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
-+|+=..|+||.- |=+...-..+ ..+...+| .-+.-.|+++..|.|||||+||+++|+|.++-+.+++|||+++.
T Consensus 234 gVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 234 GVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMAR 311 (360)
T ss_dssp T-SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHC
T ss_pred CceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcc
Confidence 4677778999996 3344444555 44444444 33456788888888999999999999999999999999999999
Q ss_pred cCcccccccCHH-HHHHHHHHHHHHHHHH
Q psy15223 1048 TDYSKDLSISNE-ILNRVVETYRRIRNTL 1075 (2492)
Q Consensus 1048 ~~~~~d~~fs~~-~l~~~~~~~~kl~n~~ 1075 (2492)
+.+.+..+|+.+ .+-+..+.|.++.+.+
T Consensus 312 ~~P~~~~~~~~~~~i~~~~Deyd~~~~~y 340 (360)
T PF01921_consen 312 TKPNKAKDFSFDLVIPRLYDEYDRLERKY 340 (360)
T ss_dssp S-TTS-EEE--STTHHHHHHHHHHHHHHH
T ss_pred cCCCcceEeccCcchHHHHHHHHHHHHHh
Confidence 777776666655 4555555555554443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.7e-05 Score=92.40 Aligned_cols=54 Identities=28% Similarity=0.501 Sum_probs=48.7
Q ss_pred CHHHHHHHHHcCcEEEecccccc-cccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTF-KNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||+|.+++ +++..+++++..+|++++++|||.|||.|..
T Consensus 157 ~~~~~~~~l~~G~~~si~g~i~~~~~~~~~~~~~~~ipldrlLlETDaP~l~P~~ 211 (258)
T PRK10425 157 TREEMQACLARGLYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPYLLPRD 211 (258)
T ss_pred CHHHHHHHHHCCCEEEECceeecccccHHHHHHHHhCChHHEEEeccCCCCCCCC
Confidence 57899999999999999998876 5567899999999999999999999998754
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.6e-05 Score=91.60 Aligned_cols=54 Identities=50% Similarity=0.960 Sum_probs=50.7
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||+|.+++++++.+++++..+|++++++|||.|||.|..
T Consensus 160 ~~~~a~~~~~~G~~is~~g~~t~~~~~~~~~~~~~ipldrlLlETD~P~~~p~~ 213 (265)
T PRK10812 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVP 213 (265)
T ss_pred CHHHHHHHHHCCCEEEECeeeecCccHHHHHHHHhCChhhEEEecCCCCCCCcC
Confidence 568999999999999999999999999999999999999999999999997753
|
|
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00025 Score=83.61 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=66.6
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
==+|.|||.||+||+++.++.++++| ++++.|+.=+|..--+.. .|+ ..+.+.+
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~------------------~~~---~~~~~~i 58 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK------------------RPD---PEAYDMI 58 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc------------------cch---HHHHHHH
Confidence 34799999999999999999999999 566666666665422221 011 2233458
Q ss_pred HHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1686 KMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
.++++.||+ +|+..|+.++ +...-+....+|.++|++|.
T Consensus 59 ~~dL~wLGl--~~d~~~~qS~--r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 59 PEDLEWLGV--KWDEVVIASD--RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHcCC--CCCCccchhc--cHHHHHHHHHHHHHcCCccc
Confidence 899999999 8887766554 23333445688899999997
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase | Back alignment and domain information |
|---|
Probab=97.37 E-value=4.4e-05 Score=80.23 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEee
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINL 1374 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~ 1374 (2492)
..|..++ .||| +||++||+|+||+|||||++++..+..++..++
T Consensus 60 ~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~ 110 (115)
T cd01284 60 RGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAER 110 (115)
T ss_pred CCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHH
Confidence 4564444 6999 899999999999999999999987766554443
|
Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain. |
| >PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.31 E-value=3.1e-05 Score=60.63 Aligned_cols=30 Identities=40% Similarity=0.916 Sum_probs=22.9
Q ss_pred CCCCccccccccccCCCCCCCCcchhhhhh
Q psy15223 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 1336 (2492)
Q Consensus 1307 ~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~ 1336 (2492)
|+||+|||++..+++.+..++.+|+||+.+
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq~v 30 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQKV 30 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTCCH
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCcCC
Confidence 689999999999998888889999999864
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A .... |
| >PHA02588 cd deoxycytidylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00011 Score=82.48 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=41.3
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLL 1399 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~ 1399 (2492)
+..|..++ .|||+||++||+++||+||||+...+.... .....+. +..++|.. +..+++..++
T Consensus 99 ~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~--~~~~~L~----~~Gi~v~~-~~~~~~~~~~ 162 (168)
T PHA02588 99 IEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGP--GWDDILR----KSGIEVIQ-IPKEELNKLN 162 (168)
T ss_pred CCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcH--HHHHHHH----HCCCEEEE-eCHHHHHhhh
Confidence 45675554 699999999999999999999987543321 1122212 24567664 5566655444
|
|
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00038 Score=91.60 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=68.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||+|||++.++.+.++| +|+..|+.=+|.+---| .. ...++.
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~--------------~R-------~~~e~~ 155 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT--------------KR-------PDPEAY 155 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc--------------cc-------chHHHH
Confidence 45557999999999999999999999999 34444444445431111 11 122345
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++.||+ +|+..|++++ |...-.....+|.++|++|.-
T Consensus 156 ~~I~edL~wLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 156 DMILEDLKWLGV--KWDEVVIQSD--RLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred HHHHHHHHHcCC--CCCCccCccc--CHHHHHHHHHHHHHcCCCccC
Confidence 788999999999 8988877765 334445567789999999753
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00033 Score=85.61 Aligned_cols=52 Identities=48% Similarity=0.894 Sum_probs=47.2
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
|.+++++++++|+||||+|.++++++++.+++++.+|++++++|||.|||.+
T Consensus 160 ~~~~~~~~~~~g~~~S~~~~~~~~~~~~~~~~~~~ip~drillETD~P~~~~ 211 (255)
T PF01026_consen 160 SPEEAKKFLDLGCYFSFSGAITFKNSKKVRELIKAIPLDRILLETDAPYLAP 211 (255)
T ss_dssp -HHHHHHHHHTTEEEEEEGGGGSTTSHHHHHHHHHS-GGGEEEE-BTTSSEC
T ss_pred CHHHHHHHHhcCceEEecccccccccHHHHHHHhcCChhhEEEcCCCCcCCc
Confidence 4689999999999999999999999999999999999999999999999987
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00076 Score=79.63 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=66.1
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|.|||.+|+||+++.++.++++| ++++.|+-=+|..--+.. .|+ ..+.+.+.
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~------------------~~~---~~~~~~i~ 59 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK------------------RPD---PEAYDMIP 59 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc------------------cch---HHHHHHHH
Confidence 4789999999999999999999999 566666655554433221 111 22344588
Q ss_pred HHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 537 MDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
++++.||+ +||.+|+.++ +...-.....+|.++|++|.
T Consensus 60 ~dL~wLGl--~~d~~~~qS~--r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 60 EDLEWLGV--KWDEVVIASD--RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHcCC--CCCCccchhc--cHHHHHHHHHHHHHcCCccc
Confidence 99999999 8887766544 33344455788999999997
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00076 Score=88.82 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=67.9
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||.|||.||||||++.++.+.++| +|...|+.=+|..---| .. ...++.
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~--------------~R-------~~~e~~ 155 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT--------------KR-------PDPEAY 155 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc--------------cc-------chHHHH
Confidence 44557899999999999999999999999 33344443344331111 11 123355
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++.||+ +|+..|+++| +-..-.....+|.++|++|.
T Consensus 156 ~~I~edL~wLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 156 DMILEDLKWLGV--KWDEVVIQSD--RLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred HHHHHHHHHcCC--CCCCccCccc--CHHHHHHHHHHHHHcCCCcc
Confidence 889999999999 8988777655 33445567788999999875
|
|
| >PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.05 E-value=4.3e-05 Score=59.85 Aligned_cols=30 Identities=40% Similarity=0.916 Sum_probs=21.9
Q ss_pred CCCCcccceEecCCCCCCCCCCCChhhHHh
Q psy15223 2457 YKKCNRCWHYQADVGERDDYPDLCNRCFNN 2486 (2492)
Q Consensus 2457 ~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~ 2486 (2492)
|.||+|||++..+++.+..+..+|+||.+|
T Consensus 1 G~~C~rC~~~~~~~~~~~r~~~~C~rCq~v 30 (30)
T PF06827_consen 1 GEKCPRCWNYIEDIGINGRSTYLCPRCQKV 30 (30)
T ss_dssp TSB-TTT--BBEEEEETTEEEEE-TTTCCH
T ss_pred CCcCccCCCcceEeEecCCCCeECcCCcCC
Confidence 579999999998887777788999999754
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A .... |
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.001 Score=87.48 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=70.2
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
-+++==||.|||.||+|||++.++.+.++|- ..|. |+.=+|.+ +|.. -..++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~--~~G~---~iLRidDT----------------Dp~R-------~~~e~ 144 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKK--YKGK---LIIRFDDT----------------DPRR-------VKPEA 144 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCE---EEEEeCcC----------------Cccc-------ccHHH
Confidence 3677889999999999999999999999962 2444 44334433 2211 12346
Q ss_pred HHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1682 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.+.++++.||+ +|+..++++| |.........+|.++|++|..
T Consensus 145 ~~~I~edL~wLGi--~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 145 YDMILEDLDWLGV--KGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred HHHHHHHHHHcCC--CCCccccccc--cHHHHHHHHHHHHHcCCceee
Confidence 7889999999999 5887776665 445556677899999999874
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=84.36 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=67.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 456 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 535 (2492)
Q Consensus 456 dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~ 535 (2492)
==+|-|||.||+|||++-+..-.++|-+ .|.-++.+==+| ++. ...++.+.+
T Consensus 6 RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD-------------------~~R-------s~~~~~~~I 57 (445)
T PRK12558 6 RFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTD-------------------LER-------SKQEYADAI 57 (445)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCC-------------------ccc-------chHHHHHHH
Confidence 3479999999999999999998888853 555555443333 222 234577899
Q ss_pred HHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 536 KMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 536 ~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+++|+.||+ +||..|.-.+- ......+..+|.++|++|+
T Consensus 58 ~e~L~wLGI--~~De~y~QSer--~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 58 AEDLKWLGI--NWDRTFRQSDR--FDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHcCC--CCCccccHHHH--HHHHHHHHHHHHHCCCEEE
Confidence 999999999 67776654332 2467888999999999995
|
|
| >COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00055 Score=72.48 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=53.6
Q ss_pred hhhccCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcc
Q psy15223 1334 FNNLFEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR 1406 (2492)
Q Consensus 1334 ~~~v~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~r 1406 (2492)
.+|..||| |.|+.||+.++|+|||++..++.....|.....+. .++++|..|+|.+|+..|++-|+.+.
T Consensus 71 ~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~----~aGi~V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 71 AYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLR----AAGIEVEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred EEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHH----HcCCeEEEehhHHHHHHHHHHHHccc
Confidence 34456888 89999999999999999999886443443333333 35669999999999999999997654
|
|
| >PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00038 Score=72.31 Aligned_cols=26 Identities=46% Similarity=0.958 Sum_probs=21.2
Q ss_pred hhccCCccchhHHHHHhccCeEEeCC
Q psy15223 1335 NNLFEPCAMCAGAIIHVRLGEIIYGT 1360 (2492)
Q Consensus 1335 ~~v~~~c~mC~~a~~~~~i~~vv~g~ 1360 (2492)
.+..|||+||++||+|+||+|||||.
T Consensus 77 yvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 77 YVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp EEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred ccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 34579999999999999999999973
|
5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B .... |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0038 Score=80.55 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=66.6
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|-|||.||+||+++.+..-.++|-+ .|.-++.+==+| ++. ...++.+.
T Consensus 5 ~RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD-------------------~~R-------s~~~~~~~ 56 (445)
T PRK12558 5 TRFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTD-------------------LER-------SKQEYADA 56 (445)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCC-------------------ccc-------chHHHHHH
Confidence 34579999999999999999888888753 555555443232 211 23456789
Q ss_pred HHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
++++|+.||+ +||..|.-++ .......+..+|.++|++|+
T Consensus 57 I~e~L~wLGI--~~De~y~QSe--r~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 57 IAEDLKWLGI--NWDRTFRQSD--RFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHcCC--CCCccccHHH--HHHHHHHHHHHHHHCCCEEE
Confidence 9999999999 6776654433 23467888899999999985
|
|
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0026 Score=83.61 Aligned_cols=93 Identities=25% Similarity=0.358 Sum_probs=70.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||||||++-++...++|-+ .|.-++.+ | +.+|.. -..++.
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRi---E----------------DTDp~R-------~~~e~~ 104 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRF---D----------------DTNPSK-------EKEHFE 104 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---c----------------CCCCcc-------cCHHHH
Confidence 6778899999999999999999999999853 55544433 2 333332 234567
Q ss_pred HHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1683 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
+.+.++++-||+ +||. +|+++| |-..-.....+|.++|++|
T Consensus 105 d~IleDL~WLGl--~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 105 QAILDDLATLGV--SWDVGPTYSSD--YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHCCC--CCCCceeeccc--cHHHHHHHHHHHHHcCCEE
Confidence 899999999999 8986 677665 3444556778999999998
|
|
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0026 Score=82.89 Aligned_cols=95 Identities=26% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||.|||.||+|||++-++...+||-+ .|.-++.+ | +.+|+. -..+++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRi---E----------------DTDp~R-------~~~e~~ 63 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRF---D----------------DTNPSK-------EKAEFE 63 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---C----------------CCCCCc-------cchHHH
Confidence 5677899999999999999999999999753 56555443 2 233322 234577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++-||+ +|+..|.+++ |-..-.....+|.++|++|.-
T Consensus 64 ~~I~~dL~WLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 64 ESIIEDLGKIEI--KPDSVSFTSD--YFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHhCC--CCCCCccccc--cHHHHHHHHHHHHHcCCeEec
Confidence 889999999999 7888877765 334455678899999999874
|
|
| >cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00057 Score=69.99 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.7
Q ss_pred hhhccCCccchhHHHHHhccCeEEeCC
Q psy15223 1334 FNNLFEPCAMCAGAIIHVRLGEIIYGT 1360 (2492)
Q Consensus 1334 ~~~v~~~c~mC~~a~~~~~i~~vv~g~ 1360 (2492)
..+..|||.||++||+|+||++|||+.
T Consensus 69 ly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 69 LYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred EEEECCChHHHHHHHHHhCCCCEEEee
Confidence 334469999999999999999999985
|
The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. |
| >cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00072 Score=73.26 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=28.1
Q ss_pred hhhhhh-ccCCccchhHHHHHhccCeEEeCCCCcC
Q psy15223 1331 NRCFNN-LFEPCAMCAGAIIHVRLGEIIYGTPSFK 1364 (2492)
Q Consensus 1331 ~RC~~~-v~~~c~mC~~a~~~~~i~~vv~g~~~~~ 1364 (2492)
..|..+ ..+||+||++||+|+||+||||+.+.+.
T Consensus 87 ~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 87 EGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred CCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCc
Confidence 345444 4699999999999999999999988664
|
Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. |
| >PRK06848 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.002 Score=70.04 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-----
Q psy15223 49 YLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT----- 122 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t----- 122 (2492)
.+..|.+..+.+..-.+.+|||++. +||+|+ +|.|-.......+.|||..||-+|...... .+. +.+-++
T Consensus 10 L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~-~i~--~i~~v~~~~~~ 85 (139)
T PRK06848 10 LIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDH-EID--TIVAVRHPKPH 85 (139)
T ss_pred HHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCC-ceE--EEEEEecCccc
Confidence 4444444555554445799999999 688877 999977666677899999999998765332 222 222222
Q ss_pred --------CCChHhHHHHHHHhC
Q psy15223 123 --------LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 --------~EPC~mC~~ai~~~g 137 (2492)
..||-+|-..|.+.+
T Consensus 86 ~~~~~~~~~~PCG~CRQvl~E~~ 108 (139)
T PRK06848 86 EDDREIWVVSPCGACRELISDYG 108 (139)
T ss_pred ccccCCCccCCChhhHHHHHHhC
Confidence 459999999999985
|
|
| >TIGR02571 ComEB ComE operon protein 2 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.00092 Score=73.82 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCccchhHHHHHhccCeEEeCCC
Q psy15223 1331 NRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTP 1361 (2492)
Q Consensus 1331 ~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~ 1361 (2492)
..|..++ .|||+||++||+|+||+||||+..
T Consensus 86 ~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~ 117 (151)
T TIGR02571 86 EGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQD 117 (151)
T ss_pred CCcEEEEeCCCcHHHHHHHHHhCCCEEEEccC
Confidence 4564444 699999999999999999999854
|
This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. |
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0039 Score=73.50 Aligned_cols=92 Identities=28% Similarity=0.256 Sum_probs=66.4
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|.|||.||+||+++.++.-.++|-+ .|.-++.+ | +.++.. ...++.+.
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRi---e----------------DtD~~R-------~~~~~~~~ 55 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRF---D----------------DTNPEK-------EEEEYVDS 55 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---c----------------CCCCcc-------cchHHHHH
Confidence 34579999999999999999999998753 45444433 2 333332 23356678
Q ss_pred HHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.++++-+|+ +||..|..++ +...-+....+|.++|++|.
T Consensus 56 I~~dL~wlGl--~wD~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 56 IKEDVKWLGI--KPYKVTYASD--YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHcCC--CCCCceeccc--CHHHHHHHHHHHHHcCCeec
Confidence 9999999999 8887766654 22334556788999999999
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0039 Score=82.06 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=70.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||||||.+-++...++|-+ .|.-++.+ | +.+|.. -..+++
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRi----------E---------DTDp~R-------~~~e~~ 104 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRF----------D---------DTNPSK-------EKEHFE 104 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE----------c---------CCCCcc-------cCHHHH
Confidence 6677899999999999999999999999853 45444322 2 344443 234578
Q ss_pred HHHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeE
Q psy15223 533 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVY 577 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliy 577 (2492)
+.+.++++-||+ +||. +|++.| |-..-.....+|.++|++|
T Consensus 105 d~IleDL~WLGl--~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 105 QAILDDLATLGV--SWDVGPTYSSD--YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHCCC--CCCCceeeccc--cHHHHHHHHHHHHHcCCEE
Confidence 899999999999 8986 676655 3455566788999999998
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0036 Score=82.51 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Q psy15223 452 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 531 (2492)
Q Consensus 452 f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~ 531 (2492)
-+++==||.|||.||||||.+.++.+.++|- ..|.-++. +|. .+|.. -..++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~--~~G~~iLR---idD----------------TDp~R-------~~~e~ 144 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKK--YKGKLIIR---FDD----------------TDPRR-------VKPEA 144 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCEEEEE---eCc----------------CCccc-------ccHHH
Confidence 3677789999999999999999999999973 24443333 332 23321 12347
Q ss_pred HHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 532 IEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 532 i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.+.+.++++-||+ +|+..|+++| |.........+|.++|+.|..
T Consensus 145 ~~~I~edL~wLGi--~~d~~~~qSd--~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 145 YDMILEDLDWLGV--KGDEVVYQSD--RIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred HHHHHHHHHHcCC--CCCccccccc--cHHHHHHHHHHHHHcCCceee
Confidence 8899999999999 5887766554 445556778899999999874
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0047 Score=80.60 Aligned_cols=95 Identities=25% Similarity=0.246 Sum_probs=72.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||||||.+-++...++|-+ .|.-++.+= +.+|+. -..+++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRiE-------------------DTDp~R-------~~~e~~ 63 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRFD-------------------DTNPSK-------EKAEFE 63 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEC-------------------CCCCCc-------cchHHH
Confidence 5677799999999999999999999999853 465544331 334433 234578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +|+..|++.+ |-..-.....+|.++|++|.-
T Consensus 64 ~~I~~dL~WLGl--~wD~~~~qSd--r~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 64 ESIIEDLGKIEI--KPDSVSFTSD--YFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHhCC--CCCCCccccc--cHHHHHHHHHHHHHcCCeEec
Confidence 899999999999 7888877655 334555678899999999874
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0051 Score=80.38 Aligned_cols=93 Identities=29% Similarity=0.392 Sum_probs=65.1
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==||-|||.||+|||++.++...+||- ..|.-++.+ |. .+|.. -..++++.
T Consensus 3 tRFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRi---eD----------------Td~~r-------~~~e~~~~ 54 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRF---DD----------------TNPVK-------EDPEYVES 54 (522)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---cC----------------CCccc-------CChHHHHH
Confidence 3358999999999999999999999974 356554443 22 22221 23356788
Q ss_pred HHHHHHHhcccccc-cCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1685 QKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.++++-||+ +| +..|.+++-. ..-.....+|.++|++|..
T Consensus 55 I~~dL~wLG~--~~d~~~~~qS~~~--~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 55 IKRDVEWLGF--KWEGKIRYSSDYF--DELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHHcCC--CCCCCceEccccH--HHHHHHHHHHHHcCCEEee
Confidence 9999999999 78 4567666521 2222344799999999974
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0026 Score=82.85 Aligned_cols=95 Identities=19% Similarity=0.029 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||-|||.||+|||.+-++...++|.+ .|.-++.+= +.+|+. -..++.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiE-------------------DTDp~r-------~~~e~~ 103 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYD-------------------DTNPET-------EEQVYI 103 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEC-------------------CCCccc-------cChHHH
Confidence 4566789999999999999999999999864 454444321 334433 334578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++|+-||+ +|+..+.+ + .|.........+|.++|++|.-
T Consensus 104 ~~I~~dL~wLGi--~~D~~~~q-S-~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 104 DAIMEMVKWMGW--KPDWVTFS-S-DYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred HHHHHHHHHcCC--CCCCCCcC-c-hhHHHHHHHHHHHHHcCCEEEc
Confidence 899999999999 78877654 2 3333445666789999999874
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0041 Score=85.30 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=71.3
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||||||++-++...++|- ..|.-++.+ | +.+|.. -..+++
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~---e----------------DTdp~r-------~~~e~~ 265 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRF---D----------------DTNPSK-------ESDEFV 265 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---c----------------CCCCCc-------CChHHH
Confidence 677889999999999999999999999983 456555443 2 223322 223577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++++-||+ +|+..|+++| |-..-.....+|.++|++|.
T Consensus 266 ~~I~~dl~wLG~--~~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 266 ENILKDIETLGI--KYDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHHHHHHHHcCC--CCCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 899999999999 8888887766 23344567789999999996
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0026 Score=74.90 Aligned_cols=92 Identities=27% Similarity=0.249 Sum_probs=67.4
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==+|.|||.||+||+++-++.-.++|-+ .|.-++.+ | +.++.. ...++.+.
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRi----------e---------DtD~~R-------~~~~~~~~ 55 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRF----------D---------DTNPEK-------EEEEYVDS 55 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe----------c---------CCCCcc-------cchHHHHH
Confidence 33479999999999999999999999853 45444322 2 344433 23457789
Q ss_pred HHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 535 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.++++-||+ +||.+|...+ +-..-.....+|.++|++|.
T Consensus 56 I~~dL~wlGl--~wD~~~~QS~--r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 56 IKEDVKWLGI--KPYKVTYASD--YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHcCC--CCCCceeccc--CHHHHHHHHHHHHHcCCeec
Confidence 9999999999 8887766544 23344567889999999999
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0061 Score=79.56 Aligned_cols=95 Identities=20% Similarity=0.041 Sum_probs=68.9
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||+|||++.++...+||.+ .|.-++.+ | +.+|+. -..++.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRi---E----------------DTDp~r-------~~~e~~ 103 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRY---D----------------DTNPET-------EEQVYI 103 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---C----------------CCCccc-------cChHHH
Confidence 4667899999999999999999999999863 45444433 2 233332 234567
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++|+-||+ +|+..+.++ .|.........+|.++|++|.-
T Consensus 104 ~~I~~dL~wLGi--~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 104 DAIMEMVKWMGW--KPDWVTFSS--DYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred HHHHHHHHHcCC--CCCCCCcCc--hhHHHHHHHHHHHHHcCCEEEc
Confidence 889999999999 788776553 3333444666789999999874
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0061 Score=73.95 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
+|-|||.||+|||++-++...++|- ..|.-++.+== .++.. ...++.+.+.+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~--~gG~~iLRiED-------------------tD~~R-------~~~~~~~~I~~ 57 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA--HGGRWLVRIED-------------------LDPPR-------EVPGAADDILR 57 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCc-------------------CCCCC-------CChHHHHHHHH
Confidence 6999999999999999999999994 36666654432 23322 22346789999
Q ss_pred HHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 538 DFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 538 ~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+|+-||+ +||. +|+..+ +...-.....+|.++|++|.-
T Consensus 58 dL~wLGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 58 TLEAYGL--HWDGEVVYQSQ--RHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHcCC--CCCCCeeeeeC--CHHHHHHHHHHHHHcCCEEec
Confidence 9999999 8885 465544 223445677899999999863
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >KOG3020|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0025 Score=76.87 Aligned_cols=51 Identities=39% Similarity=0.664 Sum_probs=46.5
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
|+|+|++++++|+||||+|.+.... .-.++++.+|++||++|||+||+.+-
T Consensus 185 s~e~~~~~lk~~~yig~~g~~~k~~--e~~~vlr~iP~erlllETDsP~~~pk 235 (296)
T KOG3020|consen 185 SAEEAQKLLKLGLYIGFTGCSLKTE--ENLEVLRSIPLERLLLETDSPYCGPK 235 (296)
T ss_pred CHHHHHHHHHccEEecccceeeech--hhHHHHhhCCHhHeeeccCCccccCC
Confidence 5799999999999999999888766 77799999999999999999999763
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0073 Score=79.06 Aligned_cols=93 Identities=27% Similarity=0.278 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||-|||.||+|||++-++...+||.+ .|.-++.+ |. .+|+. -..+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRi---eD----------------Td~~r-------~~~e~~ 81 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRF---DD----------------TNPEK-------EDQEYV 81 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---CC----------------CCCCc-------CChHHH
Confidence 6778899999999999999999999999853 45444433 32 23322 234567
Q ss_pred HHHHHHHHHhcccccc-cCeeccCC--hHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEW-DNSYKTMD--FLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw-~~~y~T~d--~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++-||+ +| +..|.+++ +.|++. -.+|.++|++|.-
T Consensus 82 ~~I~~dL~wLGi--~~d~~~~~qS~r~~~~y~~----a~~Li~~G~AY~c 125 (554)
T PRK05347 82 DSIKEDVRWLGF--DWSGELRYASDYFDQLYEY----AVELIKKGKAYVD 125 (554)
T ss_pred HHHHHHHHHcCC--CCCCCceeeecCHHHHHHH----HHHHHHcCCEeeC
Confidence 889999999999 77 56677765 224433 3599999999874
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0057 Score=79.38 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||+|||++-++...+||-+ .|.-++.+== .+|+. -..++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiED-------------------TD~~R-------~~~e~~ 61 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIED-------------------TDPER-------ETPEAE 61 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecC-------------------CCCCC-------CCHHHH
Confidence 6777899999999999999999999999863 5655554422 22221 233466
Q ss_pred HHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++|+-||+ +||. +|+.++ +-..-...-.+|.++|+.|.-
T Consensus 62 ~~I~~~L~WLGl--~wde~~~~QS~--r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 62 DAILEDLEWLGL--DWDEGPYYQSE--RFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHHHhcCC--CCCCceeehhh--hHHHHHHHHHHHHHCCCeEEe
Confidence 789999999999 9998 577765 222233456689999999865
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0071 Score=77.72 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=66.9
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
+|-|||.||+|||++-++.-.++|- ..|.-++.+==+ ++.. ...++.+.+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDT-------------------D~~R-------~~~e~~~~I~~ 56 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDT-------------------DKER-------NIEGKDKEILE 56 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcC-------------------CCCc-------CChHHHHHHHH
Confidence 6899999999999999999999985 356655544322 3322 23457789999
Q ss_pred HHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 538 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 538 ~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+|+-||+ |||.+|+.++- -..-.....+|.++|.+|.-
T Consensus 57 ~L~WlGl--~wDe~y~QSeR--~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 57 ILNLFGI--SWDKLVYQSEN--LKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHcCC--CCCCCeehhcc--HHHHHHHHHHHHHcCCeeee
Confidence 9999999 89988887662 12334578899999998763
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=73.55 Aligned_cols=91 Identities=26% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|-|||.||+||+++-++.-.++| +..|.-++.+==+| +.. -..++.+.+.
T Consensus 6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD-------------------~~R-------~~~~~~~~i~ 57 (314)
T PF00749_consen 6 FAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTD-------------------PER-------CRPEFYDAIL 57 (314)
T ss_dssp E---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSS-------------------TTT-------CHHHHHHHHH
T ss_pred eCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccc-------------------ccc-------chhhHHHHHH
Confidence 3799999999999999999999998 45566555542222 211 1234567889
Q ss_pred HHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1687 MDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
++|+.||+ +|| .+|..++ +-..-+....+|.++|++|.-
T Consensus 58 ~~L~wlGl--~~D~~~~~QS~--r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 58 EDLRWLGL--EWDYGPYYQSD--RLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHT-----STCEEEGGG--GHHHHHHHHHHHHHTTSEEEE
T ss_pred hheeEEEE--ecCCeEEeHHH--HHHHHHHHHHHHhhcCCCccc
Confidence 99999999 776 7777765 222334556688999999864
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0083 Score=82.33 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=71.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||||||.+-++...++|. ..|.-++.+= +.+|.. -..+++
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~e-------------------DTdp~r-------~~~e~~ 265 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRFD-------------------DTNPSK-------ESDEFV 265 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEec-------------------CCCCCc-------CChHHH
Confidence 667789999999999999999999999984 3565544331 333432 224578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +||..|+++| |-..-.....+|.++|++|.
T Consensus 266 ~~I~~dl~wLG~--~~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 266 ENILKDIETLGI--KYDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHHHHHHHHcCC--CCCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 899999999999 8998887765 33344667889999999996
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0098 Score=78.41 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=67.4
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Q psy15223 454 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 533 (2492)
Q Consensus 454 l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~ 533 (2492)
.+==+|-|||.||+||+++-+..-.++|-+ .|.-++.+= +.++.. ....+++
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRie-------------------DtD~~R-------~~~~~~~ 57 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIE-------------------DTDQER-------STEEAEE 57 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeC-------------------cCCCCC-------CChHHHH
Confidence 344579999999999999999999999853 555444432 223322 3345778
Q ss_pred HHHHHHHHccccccccCe--------eecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 534 QQKMDFMRLGILGEWDNS--------YKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 534 ~~~~~~~~lGi~~Dw~~~--------y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
.+.++|+-||+ +||.. |+.++- -..-.....+|.++|.+|+
T Consensus 58 ~i~~~L~wlGl--~~De~p~~~~~gpy~QS~r--~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 58 AILEGLKWLGL--DWDEGPDGGPYGPYRQSER--LDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred HHHHHHHHCCC--CCCCCCccCCCCceehhcC--HHHHHHHHHHHHHcCCeee
Confidence 99999999999 88854 776552 1344566789999999996
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0079 Score=75.32 Aligned_cols=90 Identities=26% Similarity=0.349 Sum_probs=59.1
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 537 (2492)
Q Consensus 458 PPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~ 537 (2492)
+|-|||.||+|||++-++.-.++| ...|.-++.+= +.++.. -..++.+.+.+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRie-------------------DtD~~R-------~~~~~~~~i~~ 58 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIE-------------------DTDPER-------CRPEFYDAILE 58 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEE-------------------TSSTTT-------CHHHHHHHHHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecc-------------------cccccc-------chhhHHHHHHh
Confidence 689999999999999999999998 44565555432 233322 12346788999
Q ss_pred HHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 538 DFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 538 ~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+|+-||+ +|| .+|..++- -..-.....+|.++|++|.-
T Consensus 59 ~L~wlGl--~~D~~~~~QS~r--~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 59 DLRWLGL--EWDYGPYYQSDR--LEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHT-----STCEEEGGGG--HHHHHHHHHHHHHTTSEEEE
T ss_pred heeEEEE--ecCCeEEeHHHH--HHHHHHHHHHHhhcCCCccc
Confidence 9999999 886 77776652 22334567789999999873
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.019 Score=75.12 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==+|-|||.||+|||++-++.-.++|- ..|.-++.+==+ +++. ...++.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~--~gG~fiLRIEDT-------------------D~~R-------~~~e~~ 97 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDT-------------------DLAR-------STKESE 97 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--hCCEEEEEeCcC-------------------CCCC-------CChHHH
Confidence 455557799999999999999999999994 456665544322 2222 234577
Q ss_pred HHHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++|+-||+ |||. +|+-++- -..-.....+|.++|.+|+
T Consensus 98 ~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSeR--~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 98 EAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSER--NAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHcCC--CCCcCcccCCCCCCeeeecc--HHHHHHHHHHHHHcCCeee
Confidence 899999999999 8985 3555442 2333456789999999996
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=71.10 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|-|||.||+||+++.++...++| +..|.-++.+==+| +.. ...++.+.+.
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD-------------------~~R-------~~~~~~~~I~ 56 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLD-------------------PPR-------EVPGAADDIL 56 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC-------------------CCC-------CChHHHHHHH
Confidence 3799999999999999999999998 34676666553333 211 1234667899
Q ss_pred HHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1687 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
++|+.||+ +||. +|+.++ +...-.....+|.++|++|.-
T Consensus 57 ~dL~wLGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 57 RTLEAYGL--HWDGEVVYQSQ--RHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHHcCC--CCCCCeeeeeC--CHHHHHHHHHHHHHcCCEEec
Confidence 99999999 8885 466554 223445567899999999864
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0099 Score=72.97 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Q psy15223 454 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 533 (2492)
Q Consensus 454 l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~ 533 (2492)
++==+|-|||.||+||+++-++.-.++|-+ .|.-++.+= +.++.. -..++.+
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiE-------------------DtD~~R-------~~~~~~~ 58 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIE-------------------DIDPPR-------EVPGAAD 58 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEEC-------------------cCCCCc-------cchHHHH
Confidence 344578999999999999999999999854 354444332 222322 2234678
Q ss_pred HHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 534 QQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 534 ~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
.+.++|+.||+ +||. +|+.++ .-..-..+..+|.++|++|.
T Consensus 59 ~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 59 AILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCcee
Confidence 99999999999 8984 666555 23344567889999999876
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0093 Score=80.53 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=68.1
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==||-|||.||+|||++-++...+||.+ .|.-.+.+ |. .+|+. -..+++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRi---eD----------------Tdp~r-------~~~e~~ 316 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRF---DD----------------TNPEA-------EKKEYI 316 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---cC----------------CCCCc-------cchHHH
Confidence 5667799999999999999999999999874 45544433 32 23322 234577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++-||+ +|+..|+++|-. ... ...-.+|.++|++|..
T Consensus 317 ~~I~edL~WLG~--~~d~~~~qSd~f-~~~-Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 317 DHIEEIVEWMGW--EPFKITYTSDYF-QEL-YELAVELIRRGHAYVD 359 (788)
T ss_pred HHHHHHHHHcCC--CCCCcccccHhH-HHH-HHHHHHHHHcCCeEec
Confidence 889999999996 898888877532 111 1234569999999874
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0051 Score=80.43 Aligned_cols=93 Identities=27% Similarity=0.328 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||-|||.||+|||.+-++...++|.+ .|.-++.+ | +.+|+. -..+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRi---e----------------DTd~~r-------~~~e~~ 81 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRF---D----------------DTNPEK-------EDQEYV 81 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEE---C----------------CCCCCc-------CChHHH
Confidence 6677899999999999999999999999853 45444332 1 333333 234578
Q ss_pred HHHHHHHHHccccccc-cCeeecCCh--HHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEW-DNSYKTMDF--LNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw-~~~y~T~d~--~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +| +.+|++.+- .|++ .-.+|.++|++|.-
T Consensus 82 ~~I~~dL~wLGi--~~d~~~~~qS~r~~~~y~----~a~~Li~~G~AY~c 125 (554)
T PRK05347 82 DSIKEDVRWLGF--DWSGELRYASDYFDQLYE----YAVELIKKGKAYVD 125 (554)
T ss_pred HHHHHHHHHcCC--CCCCCceeeecCHHHHHH----HHHHHHHcCCEeeC
Confidence 899999999999 77 566777652 2333 33599999999874
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.013 Score=76.74 Aligned_cols=92 Identities=28% Similarity=0.376 Sum_probs=65.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 456 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 535 (2492)
Q Consensus 456 dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~ 535 (2492)
==||-|||.||+|||.+-++...++|- ..|.-++.+= +.+|.. -..++++.+
T Consensus 4 RFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRie-------------------DTd~~r-------~~~e~~~~I 55 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFD-------------------DTNPVK-------EDPEYVESI 55 (522)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEc-------------------CCCccc-------CChHHHHHH
Confidence 348999999999999999999999984 3555544332 233322 224578899
Q ss_pred HHHHHHccccccc-cCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 536 KMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 536 ~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.++++-||+ +| +.+|.+.|- -..-.....+|.++|++|..
T Consensus 56 ~~dL~wLG~--~~d~~~~~qS~~--~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 56 KRDVEWLGF--KWEGKIRYSSDY--FDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHcCC--CCCCCceEcccc--HHHHHHHHHHHHHcCCEEee
Confidence 999999999 88 456766552 12222445799999999874
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.012 Score=77.67 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==+|-|||.||+||+++-+..-.++|-+ .|.-++.+==+ ++.. ....+.
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDt-------------------D~~R-------~~~~~~ 56 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDT-------------------DQER-------STEEAE 56 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcC-------------------CCCC-------CChHHH
Confidence 3445689999999999999999999988753 55544444222 2221 334567
Q ss_pred HHHHHHHHHhcccccccCe--------eccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDNS--------YKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~--------y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+-||+ +||.. |+.++- -..-.....+|.++|.+|+
T Consensus 57 ~~i~~~L~wlGl--~~De~p~~~~~gpy~QS~r--~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 57 EAILEGLKWLGL--DWDEGPDGGPYGPYRQSER--LDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred HHHHHHHHHCCC--CCCCCCccCCCCceehhcC--HHHHHHHHHHHHHcCCeee
Confidence 789999999999 88854 666652 1333556778999999996
|
|
| >COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.02 Score=61.01 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=57.6
Q ss_pred cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE--c----CCChHhHHHHHHH
Q psy15223 63 AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV--T----LEPCAMCAGAIIH 135 (2492)
Q Consensus 63 ~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~--t----~EPC~mC~~ai~~ 135 (2492)
-.+.+|||++. +||+|+ +|.|-...+.--+.|||..||-+|-.. +...+. .+++ . .-||-||-.-|..
T Consensus 23 YS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~---~v~v~~~~~~~~sPCG~CRQ~i~E 97 (134)
T COG0295 23 YSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISE-GKRKFD---AVVVVADTGKPVSPCGACRQVLAE 97 (134)
T ss_pred ccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHc-CCCcEE---EEEEEcCCCCCcCCcHHHHHHHHH
Confidence 34799999999 677755 999988777777999999999999887 433332 3444 2 5699999999998
Q ss_pred hC-CceEEEec
Q psy15223 136 VR-LGEIIYGT 145 (2492)
Q Consensus 136 ~g-i~rvv~g~ 145 (2492)
.. =...++-.
T Consensus 98 f~~~d~~ii~~ 108 (134)
T COG0295 98 FCGDDTLIILL 108 (134)
T ss_pred hcCCCceEEEe
Confidence 65 33444443
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.01 Score=77.02 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=70.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==+|-|||.||||||++-++-..++|.+ .|.-++-+= +.+|+. -..++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiE-------------------DTD~~R-------~~~e~~ 61 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIE-------------------DTDPER-------ETPEAE 61 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEec-------------------CCCCCC-------CCHHHH
Confidence 6667789999999999999999999999954 566555442 233322 233567
Q ss_pred HHHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++|+-||+ +||. +|+.++ +-..-...-.+|.++|+.|.-
T Consensus 62 ~~I~~~L~WLGl--~wde~~~~QS~--r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 62 DAILEDLEWLGL--DWDEGPYYQSE--RFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHHHhcCC--CCCCceeehhh--hHHHHHHHHHHHHHCCCeEEe
Confidence 899999999999 9998 577655 223334567789999998874
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.016 Score=75.76 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+=-.|-|||.||+||+++.+..-.++| ...|.-++.+==+| +.. ...++++
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD-------------------~~R-------~~~~~~~ 57 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD-------------------KER-------STKEAVE 57 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC-------------------ccc-------cChHHHH
Confidence 4455799999999999999999999998 45676666553332 211 2345677
Q ss_pred HHHHHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+-||+ ||| .+|+.++- ...-.....+|.++|.+|+-
T Consensus 58 ~i~~~L~WLGl--~wDe~py~QSeR--~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 58 AIFSGLKWLGL--DWNGEVIFQSKR--NNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HHHHHHHHcCC--CCCCCceeEeCc--HHHHHHHHHHHHHcCCeEEe
Confidence 89999999999 888 56777652 23345567899999999864
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.018 Score=75.24 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=68.7
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==.|-|||.||+|||++-+..-.++| ...|.-++.+==+ ++.. ...++++.
T Consensus 7 tRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDT-------------------D~~R-------~~~~~~~~ 58 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDT-------------------DKER-------STKEAVEA 58 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCC-------------------Cccc-------cChHHHHH
Confidence 445789999999999999999999999 3466666544322 2222 23457789
Q ss_pred HHHHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 535 QKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.++|+-||+ ||| .+|+.++- -..-.....+|.++|.+|+-
T Consensus 59 i~~~L~WLGl--~wDe~py~QSeR--~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 59 IFSGLKWLGL--DWNGEVIFQSKR--NNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HHHHHHHcCC--CCCCCceeEeCc--HHHHHHHHHHHHHcCCeEEe
Confidence 9999999999 898 57776662 23445678899999998873
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0069 Score=77.84 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy15223 1608 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKM 1687 (2492)
Q Consensus 1608 pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~ 1687 (2492)
.|-|||.||+||+++-++.-.++|- ..|.-++.+==+| +.. ...++.+.+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD-------------------~~R-------~~~e~~~~I~~ 56 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTD-------------------KER-------NIEGKDKEILE 56 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-------------------CCc-------CChHHHHHHHH
Confidence 6999999999999999999998875 3565555543332 211 23456678999
Q ss_pred HHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1688 ~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+|+-+|+ +||.+|+.++-- ..-.....+|.++|.+|.-
T Consensus 57 ~L~WlGl--~wDe~y~QSeR~--~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 57 ILNLFGI--SWDKLVYQSENL--KFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHcCC--CCCCCeehhccH--HHHHHHHHHHHHcCCeeee
Confidence 9999999 888888777621 2334467889999998863
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=76.63 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=65.4
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
==+|-|||.||+||+++.++.-.++|- ..|.-++.+== .++.. ...++++.+
T Consensus 5 RfAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieD-------------------tD~~R-------~~~~~~~~i 56 (470)
T TIGR00464 5 RFAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIED-------------------TDLER-------NIEEAEEAI 56 (470)
T ss_pred eeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCc-------------------CCCcc-------CChHHHHHH
Confidence 347999999999999999999999983 34554444322 22221 233467789
Q ss_pred HHHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1686 KMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.++|+.||+ +|| .+|+.++-. ..-.....+|.++|++|+-
T Consensus 57 ~~~L~wlGl--~~de~~~~QS~r~--~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 57 LEGLKWLGI--SWDEGPYYQSQRL--DIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred HHHHHHCCC--CCCCCeeehhCCH--HHHHHHHHHHHHcCCEEec
Confidence 999999999 888 677777621 2223556789999999863
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PRK12411 cytidine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.029 Score=60.68 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=56.3
Q ss_pred cccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCC
Q psy15223 54 PHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEP 125 (2492)
Q Consensus 54 ~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EP 125 (2492)
.+.+..+..- .+.+|||++. +||+|+ +|.|-......++.|||.+||-+|..... ..+ ..+.+. .-|
T Consensus 11 ~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~-~~i---~~i~v~~~~~~~~sP 85 (132)
T PRK12411 11 IEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD-KEF---VAIAIVADTKRPVPP 85 (132)
T ss_pred HHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCC-Cce---EEEEEEeCCCCCcCC
Confidence 3334444432 4689999998 688877 99997776677899999999999876532 232 223332 369
Q ss_pred hHhHHHHHHHhC
Q psy15223 126 CAMCAGAIIHVR 137 (2492)
Q Consensus 126 C~mC~~ai~~~g 137 (2492)
|-+|-..|.+..
T Consensus 86 CG~CRQ~l~Ef~ 97 (132)
T PRK12411 86 CGACRQVMVELC 97 (132)
T ss_pred chhHHHHHHHhC
Confidence 999999999963
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.02 Score=75.60 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||+||+++-++.-.++|-+ .|.-++.+= +.++.. ...++++.+.
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRie-------------------DtD~~R-------~~~~~~~~i~ 57 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAKHT--GGEFILRIE-------------------DTDLER-------NIEEAEEAIL 57 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeC-------------------cCCCcc-------CChHHHHHHH
Confidence 479999999999999999999999943 455444332 233322 2334778899
Q ss_pred HHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 537 MDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
++|+-||+ +|| .+|+.++- -..-.....+|.++|++|+-
T Consensus 58 ~~L~wlGl--~~de~~~~QS~r--~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 58 EGLKWLGI--SWDEGPYYQSQR--LDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred HHHHHCCC--CCCCCeeehhCC--HHHHHHHHHHHHHcCCEEec
Confidence 99999999 888 67877662 12223566889999998863
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0082 Score=81.04 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=68.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||-|||.||||||.+-++-..++|.+ .|.-.+.+= +.+|+. -..+++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRie-------------------DTdp~r-------~~~e~~ 316 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFD-------------------DTNPEA-------EKKEYI 316 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEec-------------------CCCCCc-------cchHHH
Confidence 5567799999999999999999999999964 455444321 333433 234578
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +|+..|++.|.. +.. .+.-.+|.++|++|.-
T Consensus 317 ~~I~edL~WLG~--~~d~~~~qSd~f-~~~-Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 317 DHIEEIVEWMGW--EPFKITYTSDYF-QEL-YELAVELIRRGHAYVD 359 (788)
T ss_pred HHHHHHHHHcCC--CCCCcccccHhH-HHH-HHHHHHHHHcCCeEec
Confidence 899999999997 898888776532 211 1234569999999874
|
|
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.037 Score=72.59 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==+|-|||.||+||+++-++.-.++| ...|.-++.+==+| ++. ...++.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD-------------------~~R-------~~~e~~ 97 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD-------------------LAR-------STKESE 97 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC-------------------CCC-------CChHHH
Confidence 45566789999999999999999999998 45666666553333 211 234466
Q ss_pred HHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+-||+ |||. +|+-++- -..-.....+|.++|.+|+
T Consensus 98 ~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSeR--~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 98 EAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSER--NAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHcCC--CCCcCcccCCCCCCeeeecc--HHHHHHHHHHHHHcCCeee
Confidence 789999999999 8885 3555441 2233456678999999995
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.027 Score=69.16 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|-|||.||+||+++.++.-.++|-+ .|.=++.+== .++.. -..++.
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiED-------------------tD~~R-------~~~~~~ 57 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIED-------------------IDPPR-------EVPGAA 57 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECc-------------------CCCCc-------cchHHH
Confidence 3445689999999999999999999988754 3544443321 22211 123456
Q ss_pred HHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+.||+ +||. +|+.++ +...-.....+|.++|++|.
T Consensus 58 ~~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 58 DAILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCcee
Confidence 789999999999 8884 666655 23344556788999999875
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.033 Score=65.87 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=62.0
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|-|||.||+||+++.++.-.++|-+ .|.-++.+==+| +.. -..++.+.
T Consensus 4 ~RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD-------------------~~R-------~~~~~~~~ 55 (230)
T cd00418 4 TRFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTD-------------------PER-------SRPEYVES 55 (230)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCC-------------------CCC-------CChHHHHH
Confidence 33479999999999999999999999864 555555442222 211 12346678
Q ss_pred HHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1685 QKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
+.++++.||+ +||. +|+.++ +...-+....+|.++|
T Consensus 56 I~~dL~wlGl--~wd~~~~~QS~--r~~~y~~~~~~L~~~g 92 (230)
T cd00418 56 ILEDLKWLGL--DWDEGPYRQSD--RFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHcCC--CCCCCeeehhc--CHHHHHHHHHHHHHcC
Confidence 9999999999 8887 776665 2222344677889999
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.018 Score=78.95 Aligned_cols=97 Identities=28% Similarity=0.326 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
-+++==||.|||.||+|||++.++...++|-+ .|.-++.+ |. .+|+. -..++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~---eD----------------Td~~r-------~~~e~ 82 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRM---DD----------------TNPET-------EDTEY 82 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---CC----------------CCCCc-------CChHH
Confidence 37788899999999999999999999999743 45443332 32 23322 22356
Q ss_pred HHHHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEeC
Q psy15223 1682 IEQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHGL 1730 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~~ 1730 (2492)
++.+.++++-||+ +|+. +|+++| |-..-.....+|.++|++|...
T Consensus 83 ~~~I~~dl~wLG~--~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 83 VEAIKDDVRWLGF--DWGEHLYYASD--YFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred HHHHHHHHHHcCC--CCCCCceEeec--CHHHHHHHHHHHHHcCCcccCc
Confidence 7899999999999 7875 477765 2333345567899999999754
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.022 Score=67.26 Aligned_cols=86 Identities=26% Similarity=0.345 Sum_probs=62.2
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||+||+++-++.-.++|-+ .|.-++.+== .++.. -..++.+.+.
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieD-------------------tD~~R-------~~~~~~~~I~ 57 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIED-------------------TDPER-------SRPEYVESIL 57 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCc-------------------CCCCC-------CChHHHHHHH
Confidence 479999999999999999999999864 5655554322 22322 2234778999
Q ss_pred HHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcC
Q psy15223 537 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKG 574 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kG 574 (2492)
++++.||+ +||. +|+..+ +-..-.....+|.++|
T Consensus 58 ~dL~wlGl--~wd~~~~~QS~--r~~~y~~~~~~L~~~g 92 (230)
T cd00418 58 EDLKWLGL--DWDEGPYRQSD--RFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHcCC--CCCCCeeehhc--CHHHHHHHHHHHHHcC
Confidence 99999999 8887 777655 2223335678899999
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PRK05578 cytidine deaminase; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.056 Score=58.43 Aligned_cols=69 Identities=26% Similarity=0.351 Sum_probs=52.0
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE------cCCChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV------TLEPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~------t~EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. +||+|. +|.|-......++.|||.+||-+|...... .+. .+.+ ..-||-||-..|.+.
T Consensus 22 S~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~-~i~---~i~vv~~~~~~~sPCG~CRQ~l~e~ 96 (131)
T PRK05578 22 SKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGG-RLV---AIACVGETGEPLSPCGRCRQVLAEF 96 (131)
T ss_pred CCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCC-ceE---EEEEEecCCCccCccHHHHHHHHHh
Confidence 3678999998 578866 899977666678999999999998765432 321 2333 257999999999977
Q ss_pred C
Q psy15223 137 R 137 (2492)
Q Consensus 137 g 137 (2492)
.
T Consensus 97 ~ 97 (131)
T PRK05578 97 G 97 (131)
T ss_pred C
Confidence 4
|
|
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.21 Score=56.26 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=89.9
Q ss_pred ccChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCccccccc-ccchHHHHHH
Q psy15223 2185 LFGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKIS-DMVEIDKYAI 2255 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~il 2255 (2492)
+.|.|++||.+++.+..++++|+++.+.. ....+.|+.|.++..... .... ...... -..+.++.++
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~---~~~~-~~~~~~ll~~~~E~~L~ 77 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGET---IEAE-ADADLSLLPEPDERDLI 77 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCc---Cccc-cccchhhcCCHHHHHHH
Confidence 56899999999999999999999988543 345677888887754210 0000 001111 1234577888
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2256 INITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2256 ~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~-~~~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
..+..+.+.+..++++.+++.++..+.++. ..+++|| +.+ +...+. +-...|......+..++...+.+|
T Consensus 78 ~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~ll 148 (156)
T cd07956 78 LLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGAEEELRNARLALVAAARQVLANGLDLL 148 (156)
T ss_pred HHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999998 4666666 322 222211 112234445555556666666665
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.013 Score=80.24 Aligned_cols=95 Identities=28% Similarity=0.371 Sum_probs=69.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||.|||.||+|||.+-++...++|-+ .|.-.+.+ | +.+|+. -..+++
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~---e----------------DTd~~r-------~~~e~~ 83 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRM---D----------------DTNPET-------EDTEYV 83 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---C----------------CCCCCc-------CChHHH
Confidence 6778899999999999999999999999843 45433332 2 333433 224578
Q ss_pred HHHHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++-||+ +|+. +|++.| |-..-.....+|.++|++|..
T Consensus 84 ~~I~~dl~wLG~--~wd~~~~~qS~--~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 84 EAIKDDVRWLGF--DWGEHLYYASD--YFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred HHHHHHHHHcCC--CCCCCceEeec--CHHHHHHHHHHHHHcCCcccC
Confidence 899999999999 8875 477655 233344567789999998863
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.062 Score=64.15 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=58.9
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q psy15223 1605 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 1684 (2492)
Q Consensus 1605 ~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~ 1684 (2492)
+==+|-|||.||+||+++-++.-.++|- ..|.-++.+ |.+ ++.. -..++.+.
T Consensus 4 ~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRi---eDt----------------d~~r-------~~~~~~~~ 55 (239)
T cd00808 4 TRFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRI---EDT----------------DQER-------SVPEAEEA 55 (239)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEE---CcC----------------CCCC-------CchHHHHH
Confidence 3457999999999999999999999884 355333333 331 1100 11235667
Q ss_pred HHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1685 QKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1685 ~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
+.++++.||+ |||. +|..++ ....-.....+|.++|
T Consensus 56 i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 56 ILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 8889999999 9988 777776 2222334467778888
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK08298 cytidine deaminase; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.028 Score=60.88 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=50.3
Q ss_pred ceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE-c--------CCChHhHHHHHHHh
Q psy15223 67 PVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV-T--------LEPCAMCAGAIIHV 136 (2492)
Q Consensus 67 pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~-t--------~EPC~mC~~ai~~~ 136 (2492)
+|||+|. +||+|+ +|.|-.+.+...+..||.+||-+|...... .. ...+.+ . .-||-+|-..|.+.
T Consensus 24 ~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~-~~--~~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef 99 (136)
T PRK08298 24 GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKR-VT--HSICVARENEHSELKVLSPCGVCQERLFYW 99 (136)
T ss_pred ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCc-eE--EEEEEEcCCCcCCCcccCCChhHHHHHHHh
Confidence 8999998 688877 999976665567889999999988765422 22 122222 1 35999999999998
Q ss_pred CCc
Q psy15223 137 RLG 139 (2492)
Q Consensus 137 gi~ 139 (2492)
+-.
T Consensus 100 ~~~ 102 (136)
T PRK08298 100 GPD 102 (136)
T ss_pred CCC
Confidence 643
|
|
| >TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.055 Score=65.40 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=58.9
Q ss_pred CCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCC--ccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 49 YLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQ--ITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~--~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
.+..+......|.. -.+.+|||++. +||+|. .|.|-. ......+.|||.+||-+|...... .+ ..+.++..
T Consensus 25 L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~-~i---~~Iav~~~ 99 (283)
T TIGR01355 25 LPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNER-GL---NDLAVSYA 99 (283)
T ss_pred HHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCC-ce---EEEEEEeC
Confidence 34344433344422 34899999998 688866 899965 333455889999999998766432 32 35677788
Q ss_pred ChHhHHHHHHHhC
Q psy15223 125 PCAMCAGAIIHVR 137 (2492)
Q Consensus 125 PC~mC~~ai~~~g 137 (2492)
||-+|-..|.+..
T Consensus 100 PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 100 PCGHCRQFLNEIR 112 (283)
T ss_pred CcchhHHHHHHhc
Confidence 9999999999873
|
This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine. |
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.27 Score=55.40 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=91.1
Q ss_pred hcChhhHHHHhhccCcccccccCHHHHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCccccccccc-chHHHHHH
Q psy15223 1035 LFGAEILRLWVASTDYSKDLSISNEILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDM-VEIDKYAI 1105 (2492)
Q Consensus 1035 ~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~--------~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~-~~~D~~il 1105 (2492)
..|.|++||.+++.+..+++.|+.+.+... ...+.|+.|.++-..... ... ..+....+ .+.++-++
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~---~~~-~~~~~~ll~~~~E~~L~ 77 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETI---EAE-ADADLSLLPEPDERDLI 77 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcC---ccc-cccchhhcCCHHHHHHH
Confidence 568899999999999999999999875322 246778888887643100 000 01111111 34566778
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHhc
Q psy15223 1106 INITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLIS 1180 (2492)
Q Consensus 1106 ~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~-~~~~~r~sa~~~L~~il~~l~~lLa 1180 (2492)
..+..+.+.+..++++.+++.++..+.++. ..+++|| +.+ +.-.+. +-...|......+..++...+.+|.
T Consensus 78 ~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 78 LLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999998 5677766 322 221111 1123455666666666777666663
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >KOG0833|consensus | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.056 Score=59.31 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. ++|+|. .|.|-....-+++.|||..||.++.-+.-. .+. +-..++ ..||.-|..-|...
T Consensus 40 S~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~-k~~--~~aV~~~~~~~f~tPCG~CRQfl~Ef 115 (173)
T KOG0833|consen 40 SKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGER-KFR--AIAVVAYEDGDFTTPCGVCRQFLREF 115 (173)
T ss_pred cCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcc-cce--EEEEEecCCCCcCCCcHHHHHHHHHH
Confidence 3789999999 678866 899988888889999999999999876433 332 223343 68999999999998
Q ss_pred CCc
Q psy15223 137 RLG 139 (2492)
Q Consensus 137 gi~ 139 (2492)
+-.
T Consensus 116 ~~~ 118 (173)
T KOG0833|consen 116 GNA 118 (173)
T ss_pred hhc
Confidence 876
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.1 Score=62.29 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||+||+++-++.-.++|- ..|.-.+.+==+| +.. --.++.+.+.
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd-------------------~~r-------~~~~~~~~i~ 57 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTD-------------------QER-------SVPEAEEAIL 57 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCC-------------------CCC-------CchHHHHHHH
Confidence 47999999999999999999999984 3453333332222 111 1123667888
Q ss_pred HHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcC
Q psy15223 537 MDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKG 574 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kG 574 (2492)
+++..||+ |||. +|...+ ....-.....+|.++|
T Consensus 58 ~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 58 EALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 99999999 9998 777766 1222234467778888
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02402 cytidine deaminase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.073 Score=64.58 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCC--CCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDP--TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~--~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
.+.+|||++. ++|+|. .|.|-...+... +.|||..||-+|...... .+ -.+.++..||-||-..|.+..
T Consensus 44 S~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~-~i---~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 44 SKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEP-HL---KYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred CCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCC-ce---EEEEEEeCCCcccHHHHHHhc
Confidence 3789999998 678865 899976554433 889999999998766432 33 346777889999999999873
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.089 Score=68.29 Aligned_cols=73 Identities=25% Similarity=0.165 Sum_probs=46.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+....+| .++.-++.+.+|+|||||.||.|+.+|- ..+++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 57999999999983 333222122222333333 2456667788999999999999998762 2345555555554
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.15 Score=62.62 Aligned_cols=58 Identities=22% Similarity=0.058 Sum_probs=38.0
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKP 1029 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p 1029 (2492)
+.+|+...|.||-. ++....=.+.-+.+ .+-...+++-++.+.+|.|||||.||.++.
T Consensus 152 ~~~~~vp~G~DQ~~-~i~l~rdla~r~n~-~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 152 EGCDIQPGGSDQWG-NITLGRELARRFNG-FTIAEGLTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred cCCcEEEecHHHHH-HHHHHHHHHHHhCC-CCCCeEEeeccccCCCCCcCCCCCCCCccc
Confidence 45799999999983 33332222222222 122344566888999999999999999753
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.052 Score=70.25 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=40.9
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+.+|+.+.|.||.. ++....=.+.-+....| -.+++.++.+.+|.|||||.||.|+.+|
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC
Confidence 47899999999983 32222222222333434 4556777788999999999999998765
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.13 Score=66.92 Aligned_cols=73 Identities=25% Similarity=0.165 Sum_probs=47.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. ++....=.+.-+....+| .++..++.+.+|+|||||.||.|+..+- +.+++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 67999999999984 322211111112233333 3456677788999999999999998762 3456666666654
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.069 Score=69.16 Aligned_cols=72 Identities=21% Similarity=0.079 Sum_probs=46.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
+.+|+.++|.||.. ++....=.+.-+....| -.+++.++.+.+|.|||||.||.|+..+= +.+++.++=++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~--~tsp~~i~qki~ 256 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE--KTSPYEFYQFWM 256 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC--CCCHHHHHHHHH
Confidence 47899999999984 22221111222333334 45677788889999999999999987653 334555554444
|
|
| >PRK09027 cytidine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.21 Score=60.94 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCcc--CCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQIT--RNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~--~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
.+.+|||++. ++|+|. .|.|-... .-..+.|||..||-+|..... ..+ ..+.++.-||-+|-.-|.+..
T Consensus 69 S~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge-~~i---~~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 69 SHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGE-KAI---ADITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred CCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCC-Cce---EEEEEEecCchhhHHHHHHhC
Confidence 4789999998 678866 89996543 235689999999999876543 233 456677889999999998863
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.14 Score=63.00 Aligned_cols=72 Identities=19% Similarity=0.075 Sum_probs=44.6
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+..+|.||.. ++ .+..-++ +.+ .+-...+++.++.+.+|.|||||.||.++...+.+ +++.++=.+.+
T Consensus 152 ~~~~~vp~G~DQ~~-~i--~l~rdla~r~n~-~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d--sp~~i~~ki~~ 225 (273)
T cd00395 152 EGCDIQPGGSDQWG-NI--TLGRELARRFNG-FTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTEKT--SPYEFYQFWIN 225 (273)
T ss_pred cCCcEEEecHHHHH-HH--HHHHHHHHHhCC-CCCCeEEeeccccCCCCCcCCCCCCCCccccccCC--CHHHHHHHHHc
Confidence 56799999999984 22 2222222 221 12234556688899999999999999986543322 24444444443
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.1 Score=65.44 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=47.0
Q ss_pred CHHHHHHHHHcCcEEEeccccccc---------ccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFK---------NSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+.+++++++|+||||+|..++. +.+.+++++...|+++++++||.|++.+.
T Consensus 190 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~ 251 (293)
T cd00530 190 DPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYL 251 (293)
T ss_pred CHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhh
Confidence 358899999999999999988875 56779999999999999999999998653
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.11 Score=65.99 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=58.0
Q ss_pred ccCCccchhHHHHHhccCeEEeCCCCcCCCcccce---EeeeecccCCCceEEEccccHHHHHHHHHHHHhc-------c
Q psy15223 1337 LFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSI---INLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK-------R 1406 (2492)
Q Consensus 1337 v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~---~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~-------r 1406 (2492)
..+||.-|+-+|+-++|+|||+++ +++..|-|.. .+.+. ++.++| .|++++||..+.+.|++. .
T Consensus 51 s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~----~aGi~V-~~~l~~e~~~l~~~~~~~ie~~~~~~ 124 (360)
T PRK14719 51 SNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQ----SRGIKV-NNLIRKEIIKYSRGDLKDIESLYPYI 124 (360)
T ss_pred eCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHH----HCCCEE-EeehHHHHHHHhHHhhhcchhhhhhh
Confidence 358888899999999999999999 5444222211 33322 245688 579999999998876654 2
Q ss_pred -------------ccceeEEEEecCCCchH
Q psy15223 1407 -------------RNFVKNKIQALPENRKF 1423 (2492)
Q Consensus 1407 -------------r~~~~~l~~a~~k~~~~ 1423 (2492)
..|.+++-+|+.=..++
T Consensus 125 ~~~~~~~~~~~~~~rP~V~lK~A~SLDGkI 154 (360)
T PRK14719 125 SRRININSDLSDIMLPYVISNVGMTLDGKL 154 (360)
T ss_pred eeccccccccccCCCCeEEEEEEEcCcCcc
Confidence 37778888887766544
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.3 Score=61.69 Aligned_cols=60 Identities=33% Similarity=0.382 Sum_probs=36.7
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHhcCC------CCceEEEEeeE---EEcCCCccccccCCC-ccCcch
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIILNKS------APYKALLTHGF---VVDSKGKKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~------~p~k~v~~hG~---vld~~G~KMSKS~GN-~i~p~~ 1031 (2492)
.+-+|+...|.||.. |-+|..-++-.-+ .+-...+.|.+ +.+.+|+|||||.+| .|...|
T Consensus 137 ~~~~d~vpvG~DQ~~---h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 137 LYQADLVPVGIDQDQ---HLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred hcCCCeeecccccHH---HHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 345889999999984 3344333332211 12234555555 445567899999997 776544
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.14 Score=62.91 Aligned_cols=68 Identities=31% Similarity=0.272 Sum_probs=44.3
Q ss_pred ceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+|+.+.|.||.. ++ ++..-++ +.... .-.+.|.++.+.+|+|||||.+|.++ ..+. -+++.++=.+..
T Consensus 152 ~~l~~~G~DQ~~-~i--~~~rd~a~r~~~~~--~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~--dsp~~i~~Ki~~ 221 (269)
T cd00805 152 VDLQLGGSDQRG-NI--TLGRDLIRKLGYKK--VVGLTTPLLTGLDGGKMSKSEGNAIW-DPVL--DSPYDVYQKIRN 221 (269)
T ss_pred CCeeEecHHHHH-HH--HHHHHHHHHhCCCC--cEEEeeccccCCCCCcccCCCCCccc-ccCC--CCHHHHHHHHHc
Confidence 489999999984 22 2222222 22223 34578899999999999999999986 3332 346666555554
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02182 cytidine deaminase | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.51 Score=58.09 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCC--CCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCChHhHHHHHH
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRND--PTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEPCAMCAGAII 134 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~--~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EPC~mC~~ai~ 134 (2492)
.+.+|||++. .+|+|. .|.|-...+.. .+.|||..||-+|...... .+. ...+.++ .-||-+|-.-|.
T Consensus 64 S~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~-~i~-~iaVaV~~~~~~~~sPCG~CRQfm~ 140 (339)
T PLN02182 64 SKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEK-DLC-ELAVAISTDGKEFGTPCGHCLQFLM 140 (339)
T ss_pred cCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCC-ceE-EEEEEEecCCCCCcCCCchhHHHHH
Confidence 3789999998 688866 89997665433 3899999999999766432 221 1122222 579999999999
Q ss_pred HhC
Q psy15223 135 HVR 137 (2492)
Q Consensus 135 ~~g 137 (2492)
+..
T Consensus 141 Ef~ 143 (339)
T PLN02182 141 EMS 143 (339)
T ss_pred HhC
Confidence 874
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.36 Score=61.01 Aligned_cols=80 Identities=28% Similarity=0.285 Sum_probs=46.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCC------ccccEEEEeee---EEcCCCceeeeccCC-ccCcchhhhccChh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKS------APYKALLTHGF---VVDSKGKKMSKSKGN-IIKPQKLCNLFGAE 2189 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~------~pfk~v~~hG~---vld~~G~KMSKS~GN-vi~p~~ii~~yGaD 2189 (2492)
|-+|+...|.||.. |-+|...++-.-. .+-+..+.|.+ +.+.+|+|||||.+| .|...| .+|
T Consensus 138 ~~~d~vpvG~DQ~~---h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-----~~e 209 (328)
T TIGR00233 138 YQADLVPVGIDQDQ---HLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD-----TPK 209 (328)
T ss_pred cCCCeeecccccHH---HHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC-----CHH
Confidence 45789999999985 4444443332111 12234455555 445567899999997 776654 455
Q ss_pred HHHHHHhc--cCCCCccccc
Q psy15223 2190 ILRLWVAS--TDYSKDLSIS 2207 (2492)
Q Consensus 2190 ~lR~~l~s--~~~~~d~~fs 2207 (2492)
.++=-+.+ .+....+.++
T Consensus 210 ~I~~KI~~a~td~~~~~~~~ 229 (328)
T TIGR00233 210 QIKKKIRKAATDGGRVTLFE 229 (328)
T ss_pred HHHHHHHhcCCCCCCCcccC
Confidence 56555543 3333344443
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.18 Score=62.11 Aligned_cols=54 Identities=35% Similarity=0.254 Sum_probs=37.2
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccC
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIK 1028 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~ 1028 (2492)
+|+.+.|.||.. ++....=.+.-+... ..-.++|.++.+.+|+|||||.+|.++
T Consensus 152 ~~l~~~G~DQ~~-~i~~~rd~a~r~~~~--~~~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 152 VDLQLGGSDQRG-NITLGRDLIRKLGYK--KVVGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred CCeeEecHHHHH-HHHHHHHHHHHhCCC--CcEEEeeccccCCCCCcccCCCCCccc
Confidence 489999999983 322222112222222 345578999999999999999999985
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK09027 cytidine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.25 Score=60.33 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=61.3
Q ss_pred Ccccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCc-ccCCCeEEEEc----CC
Q psy15223 52 PIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNY-RFSKNYKIYVT----LE 124 (2492)
Q Consensus 52 ~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~-~l~~~~~ly~t----~E 124 (2492)
.|.+.+.+|.. -.+.+|||+|. +||+|. .|.|-.+...+|+..||..||..+...+... .+. ...|+.. ..
T Consensus 195 ~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~-~i~lv~~~~~~is 272 (295)
T PRK09027 195 AALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQ-RAVLVEKADAKLS 272 (295)
T ss_pred HHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEE-EEEEEeCCCCCcC
Confidence 33333444422 34789999998 678876 8999988889999999999999987654331 222 3444433 35
Q ss_pred ChHhHHHHHHHhCCceE
Q psy15223 125 PCAMCAGAIIHVRLGEI 141 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rv 141 (2492)
||.||...|...+-..+
T Consensus 273 pcg~cRq~L~ef~~~~~ 289 (295)
T PRK09027 273 QWDATQATLKALGCHEL 289 (295)
T ss_pred chHHHHHHHHHhCCCCc
Confidence 99999999987754443
|
|
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.23 Score=60.72 Aligned_cols=52 Identities=56% Similarity=1.011 Sum_probs=46.8
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.+++++++++|+|+|+++..++.+.+.+++++...|.+|++.+||.||+.+
T Consensus 156 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~dril~~TD~p~~~~ 207 (252)
T TIGR00010 156 DAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAP 207 (252)
T ss_pred CHHHHHHHHHCCCeEeeceeEecCCcHHHHHHHHhCCHHHeEecccCCCCCC
Confidence 3578999999999999999888877788999999999999999999999864
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.19 Score=62.85 Aligned_cols=62 Identities=31% Similarity=0.213 Sum_probs=39.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcC--CCCceEEEEeeEEEcCCCc-cccccCCC-ccCcchh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNK--SAPYKALLTHGFVVDSKGK-KMSKSKGN-IIKPQKL 1032 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~--~~p~k~v~~hG~vld~~G~-KMSKS~GN-~i~p~~i 1032 (2492)
+-+|+.+.|.||.. ++....-.+.-+.. ..|-...+++.++.+.+|. |||||.+| .|++.|-
T Consensus 148 l~~~~~~~G~DQ~~-~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRG-HIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHH-HHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHH-HHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 34679999999984 32222211222222 2344677788888889999 99999999 7766543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.27 Score=62.32 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=41.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCc--eeeecc-CCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~--KMSKS~-GNvi~p~~ 2181 (2492)
+.+|+...|.||.. |..+..-++-.-..+-...+.|.++.+.+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~---h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRK---IHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHH---HHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 56899999999984 3344443332211112356678888888887 999999 99998765
|
|
| >KOG1147|consensus | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.88 Score=57.83 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=68.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++-=||=|||.||||||-.-.+- -|... -|+=-.++-||.+- |++ -..++.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~-~~~G~LIvRFDDTN----------------PaK-------E~~eFe 252 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQ-AYQGKLIVRFDDTN----------------PAK-------ENEEFE 252 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHH-hcCceEEEEecCCC----------------cch-------hhHHHH
Confidence 566779999999999999865542 33222 12223455566542 332 234566
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCccc
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 1733 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v 1733 (2492)
+.+.+++..|||-.| -.|..-+|-......=.+|.+.|-.|-+..|+
T Consensus 253 ~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 788999999999553 35666677777888888999999999886654
|
|
| >PF14437 MafB19-deam: MafB19-like deaminase | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.9 Score=46.89 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHH----HhCCceEEEecCC
Q psy15223 92 PTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAII----HVRLGEIIYGTPS 147 (2492)
Q Consensus 92 ~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~----~~gi~rvv~g~~~ 147 (2492)
...|||+.||.+|....... ....+|||.-.+|..|-+.|- .+|++.+.+-..+
T Consensus 79 ~~~HAE~~aiqqA~d~G~~~--g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 79 AKAHAEAGAIQQAYDAGKTV--GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred HHHHHHHHHHHHHHHhcCcc--CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecC
Confidence 36899999999999985432 347899999999999987664 4799998776653
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.21 Score=62.58 Aligned_cols=63 Identities=30% Similarity=0.256 Sum_probs=38.8
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHhcCCccccEEEEeeeEEcCCCc-eeeeccCC-ccCcchh
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGN-IIKPQKL 2182 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~-KMSKS~GN-vi~p~~i 2182 (2492)
+-+|+.+.|.||.... +.+-++.........|-...+++.++.+.+|. |||||.+| .|++.|-
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 3467999999998411 11111111111122344567888888889999 99999999 7766543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.3 Score=61.90 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=41.6
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCc--cccccC-CCccCcchh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSK-GNIIKPQKL 1032 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~--KMSKS~-GN~i~p~~i 1032 (2492)
+.+|+...|.||.. |-.+..-++-.-+.+-...++|.++.+.+|. |||||. ||.|...|=
T Consensus 167 ~~ad~vpvG~DQ~~---h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 167 LDVDIAVGGMDQRK---IHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred hCCCEEEechhHHH---HHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCC
Confidence 56899999999984 3344443332222222455668888888887 999999 999986543
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.36 Score=62.12 Aligned_cols=57 Identities=28% Similarity=0.270 Sum_probs=37.8
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+|+.+.|.||. |++....-.+.-..+..+| .+++.++...+|.|||||.||.|+.++
T Consensus 178 ~di~~gG~DQ~-~ni~~g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQW-GNIRKGRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhH-HHHHHHHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 67999999997 3444433333333344333 255556667789999999999887653
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.33 Score=61.20 Aligned_cols=59 Identities=27% Similarity=0.315 Sum_probs=36.1
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHh-----cC-CccccEEE---EeeeEEcCCCceeeeccCCccCcc
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIIL-----NK-SAPYKALL---THGFVVDSKGKKMSKSKGNIIKPQ 2180 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-----~~-~~pfk~v~---~hG~vld~~G~KMSKS~GNvi~p~ 2180 (2492)
.|.+|+...|.||.. |-.|..-++- .+ ..|....+ .+-++...+|+|||||.+|.|...
T Consensus 147 ~~~~d~VpvG~DQ~q---hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 147 LFQATHVPVGKDQIQ---HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred hccCCEEEeccccHH---HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccccc
Confidence 356789999999984 2333222221 11 11222333 355666778999999999988543
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.43 Score=61.43 Aligned_cols=57 Identities=28% Similarity=0.270 Sum_probs=36.8
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcch
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ 2181 (2492)
+|+.++|.||. +++......+.-+....+| .++..++...+|.|||||.||.|+.++
T Consensus 178 ~di~~gG~DQ~-~ni~~g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQW-GNIRKGRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhH-HHHHHHHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 57999999997 3333333333223334333 355556666789999999999887653
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >KOG1147|consensus | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.5 Score=55.85 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++-=||=|||.||||||-.-.| +-|.... |+=-.+.-||.. .|++ --.++.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALL----NqYfa~~-~~G~LIvRFDDT----------------NPaK-------E~~eFe 252 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALL----NQYFAQA-YQGKLIVRFDDT----------------NPAK-------ENEEFE 252 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHH----HHHHHHh-cCceEEEEecCC----------------Ccch-------hhHHHH
Confidence 45667999999999999986554 3332221 122234445543 3333 234577
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCccc
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPV 583 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv 583 (2492)
+.+.+++.-|||-.| -.|...+|-......=.+|.+.|-.|-+..|.
T Consensus 253 ~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 889999999999553 45666677777888888999999999887664
|
|
| >COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.23 Score=54.77 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=26.7
Q ss_pred hhhhhc-cCCccchhHHHHHhccCeEEeCCCCc
Q psy15223 1332 RCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSF 1363 (2492)
Q Consensus 1332 RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~ 1363 (2492)
.+..++ ..||.+|+..|+++||++|||+.+-+
T Consensus 97 ~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~ 129 (164)
T COG2131 97 GATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYP 129 (164)
T ss_pred CcEEEEEecccHHHHHHHHHhCceEEEeecCCC
Confidence 344444 59999999999999999999999844
|
|
| >KOG1148|consensus | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.97 Score=58.08 Aligned_cols=95 Identities=23% Similarity=0.176 Sum_probs=56.0
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+-=||=|||.||||||-..-+-==+|+ .+.|..-+. +| +..|+. -..++.
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G~cyLR---fD----------------DTNPEk-------Eee~yf 300 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGGVCYLR---FD----------------DTNPEK-------EEEEYF 300 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh--hhCCeEEEe---cC----------------CCCcch-------hhHHHH
Confidence 56678999999999999853211111111 122222111 22 334443 234556
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+++...-||. +-.-.|.+-+|-...-..-..|.++|+.|--
T Consensus 301 ~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 301 ESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred HHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 666666655665 6666788877766655666688999999853
|
|
| >cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.23 Score=52.56 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=25.0
Q ss_pred cCCccchhHHHHHhccCeEEeCCCCcC
Q psy15223 1338 FEPCAMCAGAIIHVRLGEIIYGTPSFK 1364 (2492)
Q Consensus 1338 ~~~c~mC~~a~~~~~i~~vv~g~~~~~ 1364 (2492)
.+||.||+.+|.+.++++|+|...++.
T Consensus 77 ~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 77 WSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred cCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 599999999999999999999998764
|
These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes. |
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.38 Score=60.66 Aligned_cols=58 Identities=28% Similarity=0.345 Sum_probs=35.8
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHhc-----C-CCCceEEE---EeeEEEcCCCccccccCCCccCc
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIILN-----K-SAPYKALL---THGFVVDSKGKKMSKSKGNIIKP 1029 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-----~-~~p~k~v~---~hG~vld~~G~KMSKS~GN~i~p 1029 (2492)
.|.+|+...|.||.. |-.|..-++-. | .-|....+ .|-++...+|+|||||.+|.|..
T Consensus 147 ~~~~d~VpvG~DQ~q---hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 147 LFQATHVPVGKDQIQ---HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred hccCCEEEeccccHH---HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCcccc
Confidence 456889999999984 22332222211 1 11222323 36666678899999999998854
|
|
| >PRK02135 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=5.6 Score=45.84 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=93.2
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEec-CCCchHHHHHHHhhhcCccEEEEEecccc-cccchhhHhHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQAL-PENRKFDLIIEKSVELGVKIIQPIITNRC-IIQLNNERIIKKRIRWK 1463 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~-~k~~~~~~~l~k~tElGv~~i~p~~~~rs-~~~~~~~~~~~~~~r~~ 1463 (2492)
|-|.-=|+-+...||-+ ||+-.+.+++.- |.+. +.+=+...+- ...++...+ ..-++
T Consensus 27 GR~DilcR~v~sAlflSh~iR~Dv~v~lvL~g~p~p~---------------~tI~f~G~~lr~l~PDErs~---a~~I~ 88 (201)
T PRK02135 27 GRLDILCRCVNSAFFLSHDIRRDVRVHLVLEGTPDPP---------------KTIRFEGSELRRLNPDERST---AALIK 88 (201)
T ss_pred cchhHHHHHHHHHHHHhcCccCCeEEEEEEcCCCCCC---------------eEEEEechhcccCCccHHHH---HHHHH
Confidence 45666788899999876 888888887764 3222 1222222221 112222111 11122
Q ss_pred HHHHHH---HhhhCCCCCCeec-cCCChhHHHhcc-cccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHH
Q psy15223 1464 NIIISA---TEQSGRNILPVLA-PNIYFNNWLISK-ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEEN 1538 (2492)
Q Consensus 1464 ~i~~~a---~~Q~~r~~~p~i~-~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~ 1538 (2492)
|.+... +...-+-..|-|. .-.+|++.+... .....+++++.|.+.... ..+++.+++.|=-=||+++|.+
T Consensus 89 kAL~~~~~~~~~~~~e~~pGi~V~~~~fe~ll~~~~e~~~l~~L~e~G~~i~~~----~~~~~~~FvLgDH~~~~~ee~~ 164 (201)
T PRK02135 89 KALDASEGMIGEQEREVTPGIYVRRRGFEDLLEELAEGKTLYYLHEDGEDIRDV----EFPENPVFVLGDHIGFTEEEEN 164 (201)
T ss_pred HHHhcccccccccccccCCCEEEecCCHHHHHHHHhcCCcEEEEeCCCCchhhc----cCCCCCEEEEeCCCCCCHHHHH
Confidence 222221 1111233456443 225888877654 335678888888764311 2234446889999999999999
Q ss_pred HHHHcCCeEeecCCccceeeccchhh
Q psy15223 1539 LAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1539 ~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|+..|...|||||+.|=|.-+.+++
T Consensus 165 ~L~~~ga~~iSlGP~~l~AshcI~~v 190 (201)
T PRK02135 165 LLKRLGAEKISLGPKMLHADHCITLI 190 (201)
T ss_pred HHHHhCCeEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999887765543
|
|
| >KOG1148|consensus | Back alignment and domain information |
|---|
Probab=85.51 E-value=1.8 Score=55.80 Aligned_cols=99 Identities=22% Similarity=0.162 Sum_probs=59.0
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
..|.+ +.+-=||=|||-||||||-.--+-==++++ +.|..-+. +| +..|+.
T Consensus 244 ~TGGk--V~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fD----------------DTNPEk------ 294 (764)
T KOG1148|consen 244 RTGGK--VVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FD----------------DTNPEK------ 294 (764)
T ss_pred hhCCe--eEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cC----------------CCCcch------
Confidence 44443 557789999999999998431111111221 11211110 11 334544
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
-.+++.+.+++...=||. +-+-.|.+.+|-......=.+|.++|+.|-
T Consensus 295 -Eee~yf~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 295 -EEEEYFESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred -hhHHHHHHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 345566777766665665 656678887776666666778999999886
|
|
| >KOG4426|consensus | Back alignment and domain information |
|---|
Probab=85.44 E-value=11 Score=46.93 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=87.1
Q ss_pred eEEEEeeEEEcCCCccccccCCCccCcchhhhh-------------------------------cChhhHHHHhhccCcc
Q psy15223 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-------------------------------FGAEILRLWVASTDYS 1051 (2492)
Q Consensus 1003 k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-------------------------------yGaD~lRl~l~s~~~~ 1051 (2492)
....--|.|+.++|+|+-...|.+|-..|++++ || .+.|.=++++-.
T Consensus 432 V~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayG--ciKYaDL~hnR~ 509 (656)
T KOG4426|consen 432 VEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYG--CIKYADLSHNRI 509 (656)
T ss_pred eeeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhc--chhHhhhccccc
Confidence 455667889999999999999999998888762 33 244444445555
Q ss_pred cccccCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHH-HHHHHHHHHHHHHhcc
Q psy15223 1052 KDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAII-NITNLQKEILSHYRMY 1122 (2492)
Q Consensus 1052 ~d~~fs~~~l~~--------~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~-~l~~~~~~v~~a~~~~ 1122 (2492)
+|..||-+.+-. ..-++.||++++|.--....+........+.-.+...+.|-|. .|.++.+-+..+.++.
T Consensus 510 ~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L 589 (656)
T KOG4426|consen 510 TDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSL 589 (656)
T ss_pred cceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 677777665421 1125667777776421100000000000011123334556554 5778888899999999
Q ss_pred chHHHHHHHHHHHhhhhhhhHH
Q psy15223 1123 EFHMIVSKLQIYCSEDLGSFYL 1144 (2492)
Q Consensus 1123 ~f~~a~~~l~~f~~~~ls~~Yl 1144 (2492)
-.|..+..+++++ ..|..||=
T Consensus 590 ~lh~lC~y~y~l~-t~Ft~FY~ 610 (656)
T KOG4426|consen 590 FLHVLCDYLYELA-TLFTEFYD 610 (656)
T ss_pred HHHHHHHHHHHHH-HHHHHHhh
Confidence 9999999999998 57888883
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=84.98 E-value=0.57 Score=60.14 Aligned_cols=60 Identities=28% Similarity=0.308 Sum_probs=36.5
Q ss_pred CCcCeeeeecccccchhhHHHHHHHHHHhc-----CCCCc--e-EEE-E-eeEEEcCCCccccccCCCccCcc
Q psy15223 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILN-----KSAPY--K-ALL-T-HGFVVDSKGKKMSKSKGNIIKPQ 1030 (2492)
Q Consensus 968 ~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-----~~~p~--k-~v~-~-hG~vld~~G~KMSKS~GN~i~p~ 1030 (2492)
..|-+|+...|.||.. |-.|..-++-. +...| . .++ . +..+.+.+|+|||||.+|.|...
T Consensus 145 Lly~ad~VPVG~DQ~q---HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 145 LMFNAHKVPVGRDQIQ---HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred hhcCCCEEEEcchhHH---HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeec
Confidence 3456789999999985 33333322221 11112 2 222 1 34677788999999999998544
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=84.87 E-value=0.53 Score=59.54 Aligned_cols=60 Identities=32% Similarity=0.291 Sum_probs=36.1
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHh-----cCCccc--cE-EEE-eeeEEcCCC-ceeeeccCCccCcch
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIIL-----NKSAPY--KA-LLT-HGFVVDSKG-KKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-----~~~~pf--k~-v~~-hG~vld~~G-~KMSKS~GNvi~p~~ 2181 (2492)
-|.+|+...|.||.. |.+|..-++- .+..-| .. ++. |.++.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~---h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLP---MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHH---HHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 367899999999974 2233322221 121111 11 211 456666676 899999999887655
|
|
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.62 E-value=0.95 Score=58.16 Aligned_cols=70 Identities=26% Similarity=0.250 Sum_probs=43.1
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHh-cCCccccEEEEeeeEEcC-CC-ceeeeccCC-ccCcchhhhccChhHHHHH
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDS-KG-KKMSKSKGN-IIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk~v~~hG~vld~-~G-~KMSKS~GN-vi~p~~ii~~yGaD~lR~~ 2194 (2492)
.+-+|+...|.||.. |.+|..-++- ++..+-.-++.|.++.+. +| .|||||.+| .|...| .++.+|=-
T Consensus 208 ~l~adivpvG~DQ~~---~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kK 279 (383)
T PTZ00126 208 YLKADICQLGMDQRK---VNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRK 279 (383)
T ss_pred ccCCCEEEeCccHHH---HHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHH
Confidence 356899999999974 2333333332 222222234567888777 35 799999988 577665 45555544
Q ss_pred Hh
Q psy15223 2195 VA 2196 (2492)
Q Consensus 2195 l~ 2196 (2492)
+.
T Consensus 280 I~ 281 (383)
T PTZ00126 280 IK 281 (383)
T ss_pred HH
Confidence 44
|
|
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=84.47 E-value=0.81 Score=56.66 Aligned_cols=69 Identities=33% Similarity=0.328 Sum_probs=44.1
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh--cCC----ccccEEEEe--eeEEcCCC--ceeeeccC-CccCcchhhhccCh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL--NKS----APYKALLTH--GFVVDSKG--KKMSKSKG-NIIKPQKLCNLFGA 2188 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l--~~~----~pfk~v~~h--G~vld~~G--~KMSKS~G-Nvi~p~~ii~~yGa 2188 (2492)
|-+|+...|.||.. |-.+..-++- ... .+-...+.| .++.+.+| .|||||.| |.|...| .+
T Consensus 136 ~~~~~vpvG~DQ~~---h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~ 207 (280)
T cd00806 136 YKACLVPVGIDQDP---HLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SP 207 (280)
T ss_pred ccCCEEeeccccHH---HHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC-----CH
Confidence 34588888999974 3333333322 211 233566777 78877776 59999999 9998765 45
Q ss_pred hHHHHHHh
Q psy15223 2189 EILRLWVA 2196 (2492)
Q Consensus 2189 D~lR~~l~ 2196 (2492)
+.+|=-+.
T Consensus 208 ~~i~~KI~ 215 (280)
T cd00806 208 KEIKKKIM 215 (280)
T ss_pred HHHHHHHH
Confidence 55655444
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=84.37 E-value=0.57 Score=59.89 Aligned_cols=59 Identities=27% Similarity=0.174 Sum_probs=37.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcC----CccccEEEEeeeEEcCCCceeeecc-CCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNK----SAPYKALLTHGFVVDSKGKKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~----~~pfk~v~~hG~vld~~G~KMSKS~-GNvi~p~~ 2181 (2492)
|-+++...|.||.. |..+..-++-.- ..+-...+.|-++.+.+|.|||||. +|.|...|
T Consensus 202 ~~~~lvPvG~DQ~~---h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDP---HIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHH---HHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 34689999999974 223332222110 1222345556788888999999998 67887765
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=84.23 E-value=0.77 Score=58.98 Aligned_cols=69 Identities=25% Similarity=0.196 Sum_probs=41.2
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-----cCCccc--cEEEE---eeeEEcCCCceeeeccCCccCcchhhhccChh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-----NKSAPY--KALLT---HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 2189 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-----~~~~pf--k~v~~---hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD 2189 (2492)
|-+|+...|.||.. |-.|..-++- ++...| +..++ +..+.+.+|+|||||.+|.|...| .+|
T Consensus 147 y~ad~VPVG~DQ~q---HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~ 218 (431)
T PRK12284 147 FNAHKVPVGRDQIQ---HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA-----PRE 218 (431)
T ss_pred cCCCEEEEcchhHH---HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC-----CHH
Confidence 55789999999984 3333332221 122112 22222 346777889999999999986543 355
Q ss_pred HHHHHHh
Q psy15223 2190 ILRLWVA 2196 (2492)
Q Consensus 2190 ~lR~~l~ 2196 (2492)
.+|=-+.
T Consensus 219 ~I~kKI~ 225 (431)
T PRK12284 219 ELKKAIF 225 (431)
T ss_pred HHHHHHh
Confidence 5555444
|
|
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=84.22 E-value=1 Score=54.95 Aligned_cols=52 Identities=56% Similarity=0.997 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.++++++++.|+|||+++...+.....+++++...|.+|++.+||.|++.+.
T Consensus 157 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~ 208 (251)
T cd01310 157 AEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPV 208 (251)
T ss_pred HHHHHHHHHcCCEEEeeeeeccCCCHHHHHHHHhCChHHEEEcccCCCCCCC
Confidence 4788999999999999998877666779999999999999999999998643
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=1 Score=57.82 Aligned_cols=60 Identities=28% Similarity=0.295 Sum_probs=37.9
Q ss_pred CcCeeeeecccccchhhHHHHHHHHHHhc-CCCCceEEEEeeEEEcC-CC-ccccccCCC-ccCcch
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLTSIILN-KSAPYKALLTHGFVVDS-KG-KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~-~~~p~k~v~~hG~vld~-~G-~KMSKS~GN-~i~p~~ 1031 (2492)
.+-+|+...|.||.. |.+|..-++-. +..+-.-++.|.++.+. +| .|||||.+| .|...|
T Consensus 208 ~l~adivpvG~DQ~~---~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 208 YLKADICQLGMDQRK---VNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred ccCCCEEEeCccHHH---HHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 456899999999974 22343333322 22222234567888877 35 799999988 576655
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=83.84 E-value=0.61 Score=58.96 Aligned_cols=63 Identities=29% Similarity=0.226 Sum_probs=35.8
Q ss_pred CcCeeeeecccccchhh-HHHHHHHHHHh-cCCC--CceE-EEE-eeEEEcCCC-ccccccCCCccCcch
Q psy15223 969 IFPADLYLEGSDQHRGW-FHSSLLTSIIL-NKSA--PYKA-LLT-HGFVVDSKG-KKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgw-f~s~l~~~~~~-~~~~--p~k~-v~~-hG~vld~~G-~KMSKS~GN~i~p~~ 1031 (2492)
.|.+|+...|.||...+ +.+-++...-. .+.. +... ++. |.++.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 46789999999998411 11222222211 1211 1111 221 456667776 899999999887554
|
|
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=83.34 E-value=1 Score=55.87 Aligned_cols=59 Identities=36% Similarity=0.335 Sum_probs=38.6
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCC------CCceEEEEe--eEEEcCCC--ccccccCC-CccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKS------APYKALLTH--GFVVDSKG--KKMSKSKG-NIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~------~p~k~v~~h--G~vld~~G--~KMSKS~G-N~i~p~~ 1031 (2492)
+-+|+...|.||.. |-.+..-++-.-+ .+-...+.| .++.+.+| .|||||.| |.|...|
T Consensus 136 ~~~~~vpvG~DQ~~---h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLVPVGIDQDP---HLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEEeeccccHH---HHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 34688888999974 3333322222111 233566777 88877777 49999999 9997765
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.68 E-value=0.85 Score=56.29 Aligned_cols=61 Identities=25% Similarity=0.227 Sum_probs=38.2
Q ss_pred CcCeeeeecccccchhh-HHHHHHHHHHhc--CCCCceEEEEee--EEEcCCC-ccccccCCC-ccCc
Q psy15223 969 IFPADLYLEGSDQHRGW-FHSSLLTSIILN--KSAPYKALLTHG--FVVDSKG-KKMSKSKGN-IIKP 1029 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgw-f~s~l~~~~~~~--~~~p~k~v~~hG--~vld~~G-~KMSKS~GN-~i~p 1029 (2492)
.|-+++.--|.||-..+ +.+-+....-.. ..-+-...+.|. ++.+.+| +|||||.+| +|..
T Consensus 143 l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L 210 (314)
T COG0180 143 LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFL 210 (314)
T ss_pred hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeec
Confidence 34467778899997411 222222222111 123336677777 8988999 899999999 7754
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=82.64 E-value=0.76 Score=58.80 Aligned_cols=59 Identities=27% Similarity=0.174 Sum_probs=37.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcC----CCCceEEEEeeEEEcCCCccccccC-CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNK----SAPYKALLTHGFVVDSKGKKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~----~~p~k~v~~hG~vld~~G~KMSKS~-GN~i~p~~ 1031 (2492)
|-+++...|.||.. |-.|..-++-.- ..+-...+.|-++.+.+|.|||||. +|.|...|
T Consensus 202 ~~~~lvPvG~DQ~~---h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDP---HIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHH---HHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 45789999999984 222322222111 1222345556788888999999998 67887654
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.32 E-value=0.87 Score=56.22 Aligned_cols=61 Identities=25% Similarity=0.203 Sum_probs=37.7
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHhc--CCccccEEEEee--eEEcCCC-ceeeeccCC-ccCcc
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIILN--KSAPYKALLTHG--FVVDSKG-KKMSKSKGN-IIKPQ 2180 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l~--~~~pfk~v~~hG--~vld~~G-~KMSKS~GN-vi~p~ 2180 (2492)
|-+++.--|.||-..+ +.+-+....-.. ...+-...+.|. ++.+.+| .|||||.+| +|...
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 4457788899997311 223333222211 123335667777 8888888 899999999 76543
|
|
| >TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric | Back alignment and domain information |
|---|
Probab=82.32 E-value=2 Score=52.40 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=57.9
Q ss_pred cccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCC--CeEEEE----cCC
Q psy15223 53 IPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK--NYKIYV----TLE 124 (2492)
Q Consensus 53 a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~--~~~ly~----t~E 124 (2492)
|.+.+..|.. -.+.||||+|+ +||+|. .|.|-.+...+++.+||.+||-.+.......++.. ...|-- ...
T Consensus 181 A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~i~~aVl~e~~~~~vs 259 (283)
T TIGR01355 181 ALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGFEDIVRAVLVEKADAKVS 259 (283)
T ss_pred HHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhheeEEEEEecCCCccC
Confidence 3333344432 34789999999 577766 99999989999999999999999876532222221 122221 236
Q ss_pred ChHhHHHHHHHhCCc
Q psy15223 125 PCAMCAGAIIHVRLG 139 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~ 139 (2492)
||.||...|..-+..
T Consensus 260 ~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 260 HEATARTLLETIAPS 274 (283)
T ss_pred hHHHHHHHHHHhCCC
Confidence 899999888776533
|
This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine. |
| >COG1901 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.99 E-value=12 Score=42.19 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEE-ecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQ-ALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKN 1464 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~-a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~ 1464 (2492)
|-+.==|+.+.+.||-+ |++-.+.+.+ +.|-+.+ .|..-.++-+...++.-.+ .-.-+
T Consensus 27 GR~DvlcRc~~~alf~sh~~R~dV~v~lvL~G~p~ppk--------------tI~~~g~~~~~~~pdErs~----a~~i~ 88 (197)
T COG1901 27 GRLDVLCRCVSSALFLSHGIRRDVVVYLVLLGPPDPPK--------------TIRVEGSELRYLNPDERSL----AILIK 88 (197)
T ss_pred cchhHHHHHHhHHHHHhccccCceEEEEEEecCCCCCE--------------EEEEEcccccccCcchHHH----HHHHH
Confidence 44555688888888866 7888887777 6665554 2333333333222322111 11111
Q ss_pred HHHHH--HhhhCCCCCCeecc-CCChhHHHhcc-cccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHH
Q psy15223 1465 IIISA--TEQSGRNILPVLAP-NIYFNNWLISK-ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLA 1540 (2492)
Q Consensus 1465 i~~~a--~~Q~~r~~~p~i~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~ 1540 (2492)
-+.+| -+-..+...|-|.- -..+++.+..- .....+++++.|...-. .. ...+.++++|--=|+|+++...+
T Consensus 89 kAL~~~~~~~~~~~~~pGi~V~~~~~e~ll~~l~~~~~ly~L~E~G~DI~~-v~---~~~np~FIlGDH~g~t~e~~k~L 164 (197)
T COG1901 89 KALDAELGKEQTREVTPGIYVRNGGFEALLAELAEGRSLYYLHEDGRDISE-VD---LIPNPVFILGDHIGLTEEDEKLL 164 (197)
T ss_pred HHHHhhccccceeecCCCEEEecCCHHHHHHHHhccCcEEEEccCCccHhh-cc---cCCCceEEeeCCCCCCHHHHHHH
Confidence 22222 12223335676655 45677766543 22456788877765322 22 13345688999999999999999
Q ss_pred HHcCCeEeecCCccceeeccchhh
Q psy15223 1541 YECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1541 ~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+..+...|||||--|=|+-+..++
T Consensus 165 ~r~~~~~ISlGP~~lha~hcit~~ 188 (197)
T COG1901 165 ERHAAKKISLGPLSLHADHCITLL 188 (197)
T ss_pred HHhhCceeEeCchHHHHHHHHHHH
Confidence 999999999999999888776554
|
|
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=81.02 E-value=11 Score=40.33 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHH
Q psy15223 2215 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yl 2294 (2492)
...+.|+.|.++............. ... ...+.++.++..+..+...+..+++.++++.+++.+.++. ..+++||
T Consensus 2 ~Ya~aRi~sIl~k~~~~~~~~~~~~--~~~-~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy- 76 (119)
T PF05746_consen 2 QYAYARISSILRKAEESGINDEYDD--DFL-LEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY- 76 (119)
T ss_dssp HHHHHHHHHHHHHCTCTTCCCCHCC--HHH-S-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-
T ss_pred hHHHHHHHHHHHcCCCcCCccccch--hhh-cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-
Confidence 3567788888886543322111110 000 1355788899999999999999999999999999999998 5788877
Q ss_pred HhhhhhhccccCCh--HHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2295 DILKDRLYTTKKNS--HARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2295 e~~K~~l~~~~~~~--~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
+ +-+........ ..|.........++...+.+|.
T Consensus 77 ~--~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llg 112 (119)
T PF05746_consen 77 D--NVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLG 112 (119)
T ss_dssp H--HS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred h--hccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3 22333332221 3445555555566666666653
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.00 E-value=1.3 Score=56.73 Aligned_cols=53 Identities=34% Similarity=0.371 Sum_probs=35.9
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCcc
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 2177 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi 2177 (2492)
+|+.++|.||-+++....=+.-. +.. .-.-.+++.++.+.+|.|||||.||.+
T Consensus 181 ~dlq~GG~DQ~~ni~~grdl~rr-~g~--~~~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRDLIRR-LGQ--KKVVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred cchhcCChHHHHHHHHHHHHHHH-hCC--CCeEEEEeccccCCCCCcccccCCCce
Confidence 67999999998655333222211 222 223467777888999999999999943
|
|
| >PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus | Back alignment and domain information |
|---|
Probab=80.65 E-value=11 Score=43.55 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=84.8
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEe-cCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQA-LPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKN 1464 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a-~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~ 1464 (2492)
|-|.-=|+.+...||-+ ||+-.+.+++- -|.+.+ .|.+.-++-.....++ +. .-.
T Consensus 27 GRlDiLcR~v~~AlflSh~~R~Dv~v~lvL~g~pdp~~--------------tI~f~g~~lr~l~pDE-rs------~a~ 85 (199)
T PF04013_consen 27 GRLDILCRCVNAALFLSHGIRRDVRVYLVLLGPPDPPR--------------TIRFEGSELRRLNPDE-RS------IAA 85 (199)
T ss_dssp TSHHHHHHHHHHHHBESSSB-TTEEEEEEEEESSSS-E--------------EEEEETTT--S--SSH-HH------HHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccceEEEEEEecCCCCCE--------------EEEEeccccCCCCccH-HH------HHH
Confidence 55777899999999975 88888877765 444433 2333332222222222 11 223
Q ss_pred HHHHHHhhhC---CCC---CCeec-cCCChhHHHhcccc-cceEEeccCCcccccccccCCCCC-ceEEEecCCCCCCHH
Q psy15223 1465 IIISATEQSG---RNI---LPVLA-PNIYFNNWLISKIS-CARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEK 1535 (2492)
Q Consensus 1465 i~~~a~~Q~~---r~~---~p~i~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iGPEGG~s~~ 1535 (2492)
+++.|.+.-+ ..+ .|-|. .-.+|++.+..... ...+++++.|.+.... ..+. +.+++.|=--||+++
T Consensus 86 li~kAL~~~~~~~~~~~e~~pGi~v~~~~fe~ll~~~~~~~~l~~L~e~G~di~~~----~~~~~d~~FVLgDH~g~~~e 161 (199)
T PF04013_consen 86 LIKKALEKRGMIGEQWRESTPGIYVRKGGFEDLLEELAEEYPLYYLHEDGEDIRDV----EFPGNDPVFVLGDHIGFTEE 161 (199)
T ss_dssp HHHHHHCHCCTGCCSEEEEETTEEEE---HHHHHHHHHCTSEEEEESTTSEEGGGS-------S-SEEEEEE-TT-SHHH
T ss_pred HHHHHHhcCCCCCceeeecCCCEEEecCCHHHHHHHHhcCCcEEEEcCCCCcHhhc----ccCCCCCeEEEeCCCCCCHH
Confidence 4444443331 111 23222 22478887765332 4678888887654322 1233 678999999999999
Q ss_pred HHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1536 EENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1536 E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
|.++|++.|...|||||..|=|.-+.+++
T Consensus 162 ee~~L~~~~a~kiSlGP~~lhAdhcI~iv 190 (199)
T PF04013_consen 162 EEELLERLGAEKISLGPKSLHADHCITIV 190 (199)
T ss_dssp HHHHHHCTTSEEEES-SS---HHHHHHHH
T ss_pred HHHHHHHccCceEEeCCHHHHHHHHHHHH
Confidence 99999999999999999999887766554
|
The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2492 | ||||
| 1qu2_A | 917 | Insights Into Editing From An Ile-Trna Synthetase S | 1e-169 | ||
| 1jzq_A | 821 | Isoleucyl-Trna Synthetase Complexed With Isoleucyl- | 2e-68 | ||
| 1gax_A | 862 | Crystal Structure Of Thermus Thermophilus Valyl-Trn | 2e-43 | ||
| 1z3a_A | 168 | Crystal Structure Of Trna Adenosine Deaminase Tada | 7e-34 | ||
| 1z3a_A | 168 | Crystal Structure Of Trna Adenosine Deaminase Tada | 4e-14 | ||
| 3ocq_A | 183 | Crystal Structure Of Trna-Specific Adenosine Deamin | 2e-33 | ||
| 3ocq_A | 183 | Crystal Structure Of Trna-Specific Adenosine Deamin | 9e-14 | ||
| 2b3j_A | 159 | Crystal Structure Of Staphylococcus Aureus Trna Ade | 1e-27 | ||
| 2b3j_A | 159 | Crystal Structure Of Staphylococcus Aureus Trna Ade | 6e-12 | ||
| 1vhy_A | 257 | Crystal Structure Of Haemophilus Influenzae Protein | 2e-20 | ||
| 1vhy_A | 257 | Crystal Structure Of Haemophilus Influenzae Protein | 2e-16 | ||
| 1nxz_A | 246 | X-Ray Crystal Structure Of Protein Yggj_haein Of Ha | 4e-20 | ||
| 1nxz_A | 246 | X-Ray Crystal Structure Of Protein Yggj_haein Of Ha | 2e-16 | ||
| 4e8b_A | 251 | Crystal Structure Of 16s Rrna Methyltransferase Rsm | 1e-19 | ||
| 4e8b_A | 251 | Crystal Structure Of 16s Rrna Methyltransferase Rsm | 1e-15 | ||
| 1wwr_A | 171 | Crystal Structure Of Trna Adenosine Deaminase Tada | 2e-19 | ||
| 2nx8_A | 179 | The Crystal Structure Of The Trna-Specific Adenosin | 1e-18 | ||
| 2nx8_A | 179 | The Crystal Structure Of The Trna-Specific Adenosin | 2e-07 | ||
| 2a8n_A | 144 | Biochemical And Structural Studies Of A-To-I Editin | 5e-17 | ||
| 2a8n_A | 144 | Biochemical And Structural Studies Of A-To-I Editin | 8e-04 | ||
| 1wk8_A | 194 | Isoleucyl-Trna Synthetase Editing Domain Complexed | 2e-16 | ||
| 1wk8_A | 194 | Isoleucyl-Trna Synthetase Editing Domain Complexed | 2e-16 | ||
| 1wny_A | 186 | Isoleucyl-Trna Synthetase Editing Domain Length = 1 | 6e-14 | ||
| 1wny_A | 186 | Isoleucyl-Trna Synthetase Editing Domain Length = 1 | 6e-14 | ||
| 3dh1_A | 189 | Crystal Structure Of Human Trna-Specific Adenosine- | 3e-13 | ||
| 1ue0_A | 182 | Isoleucyl-Trna Synthetase Editing Domain Complexed | 1e-12 | ||
| 1ue0_A | 182 | Isoleucyl-Trna Synthetase Editing Domain Complexed | 1e-12 | ||
| 1udz_A | 182 | Isoleucyl-Trna Synthetase Editing Domain Length = 1 | 1e-12 | ||
| 1udz_A | 182 | Isoleucyl-Trna Synthetase Editing Domain Length = 1 | 1e-12 | ||
| 1yix_A | 265 | Crystal Structure Of Ycfh, Tatd Homolog From Escher | 1e-12 | ||
| 1wkq_A | 164 | Crystal Structure Of Bacillus Subtilis Guanine Deam | 2e-12 | ||
| 1obh_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 6e-12 | ||
| 2v0c_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 7e-12 | ||
| 1tiy_A | 164 | X-Ray Structure Of Guanine Deaminase From Bacillus | 1e-11 | ||
| 4aq7_A | 880 | Ternary Complex Of E. Coli Leucyl-Trna Synthetase, | 3e-10 | ||
| 1vhk_A | 268 | Crystal Structure Of An Hypothetical Protein Length | 8e-10 | ||
| 1vhk_A | 268 | Crystal Structure Of An Hypothetical Protein Length | 9e-08 | ||
| 3ziu_A | 637 | Crystal Structure Of Mycoplasma Mobile Leucyl-trna | 6e-09 | ||
| 3ziu_A | 637 | Crystal Structure Of Mycoplasma Mobile Leucyl-trna | 3e-05 | ||
| 2gzx_A | 265 | Crystal Structure Of The Tatd Deoxyribonuclease Mw0 | 4e-08 | ||
| 2o3k_A | 161 | Yeast Cytosine Deaminase D92e Triple Mutant Bound T | 1e-07 | ||
| 1ysd_A | 161 | Yeast Cytosine Deaminase Double Mutant Length = 161 | 1e-07 | ||
| 1ysb_A | 161 | Yeast Cytosine Deaminase Triple Mutant Length = 161 | 2e-07 | ||
| 1p6o_A | 161 | The Crystal Structure Of Yeast Cytosine Deaminase B | 2e-07 | ||
| 1uaq_A | 158 | The Crystal Structure Of Yeast Cytosine Deaminase L | 2e-07 | ||
| 4j3c_A | 267 | Crystal Structure Of 16s Ribosomal Rna Methyltransf | 2e-07 | ||
| 4j3c_A | 267 | Crystal Structure Of 16s Ribosomal Rna Methyltransf | 6e-05 | ||
| 1wkb_A | 810 | Crystal Structure Of Leucyl-Trna Synthetase From Th | 2e-07 | ||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 3e-07 | ||
| 1v6z_A | 228 | Crystal Structure Of Tt1573 From Thermus Thermophil | 3e-07 | ||
| 1v6z_A | 228 | Crystal Structure Of Tt1573 From Thermus Thermophil | 2e-06 | ||
| 2csx_A | 497 | Crystal Structure Of Aquifex Aeolicus Methionyl-Trn | 1e-06 | ||
| 3h97_A | 560 | Structure Of A Mutant Methionyl-trna Synthetase Wit | 4e-06 | ||
| 3h97_A | 560 | Structure Of A Mutant Methionyl-trna Synthetase Wit | 4e-06 | ||
| 1qqt_A | 551 | Methionyl-Trna Synthetase From Escherichia Coli Len | 5e-06 | ||
| 1qqt_A | 551 | Methionyl-Trna Synthetase From Escherichia Coli Len | 5e-06 | ||
| 1f4l_A | 551 | Crystal Structure Of The E.Coli Methionyl-Trna Synt | 5e-06 | ||
| 1f4l_A | 551 | Crystal Structure Of The E.Coli Methionyl-Trna Synt | 5e-06 | ||
| 1p7p_A | 551 | Methionyl-trna Synthetase From Escherichia Coli Com | 5e-06 | ||
| 1p7p_A | 551 | Methionyl-trna Synthetase From Escherichia Coli Com | 5e-06 | ||
| 3h9c_A | 547 | Structure Of Methionyl-Trna Synthetase: Crystal For | 5e-06 | ||
| 3h9c_A | 547 | Structure Of Methionyl-Trna Synthetase: Crystal For | 5e-06 | ||
| 1ox7_A | 161 | Crystal Structure Of Yeast Cytosine Deaminase Apo-E | 6e-06 | ||
| 4dlp_A | 536 | Crystal Structure Of Methionyl-Trna Synthetase Metr | 6e-05 | ||
| 4dlp_A | 536 | Crystal Structure Of Methionyl-Trna Synthetase Metr | 6e-05 | ||
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 6e-05 | ||
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 6e-05 | ||
| 1j6o_A | 268 | Crystal Structure Of Tatd-related Deoxyribonuclease | 6e-05 | ||
| 2hvv_A | 184 | Crystal Structure Of Dcmp Deaminase From Streptococ | 6e-05 | ||
| 1rqg_A | 722 | Methionyl-Trna Synthetase From Pyrococcus Abyssi Le | 7e-05 | ||
| 1rqg_A | 722 | Methionyl-Trna Synthetase From Pyrococcus Abyssi Le | 7e-05 | ||
| 1z85_A | 234 | Crystal Structure Of A Predicted Rna Methyltransfer | 2e-04 | ||
| 1z85_A | 234 | Crystal Structure Of A Predicted Rna Methyltransfer | 2e-04 | ||
| 2g84_A | 197 | Cytidine And Deoxycytidylate Deaminase Zinc-Binding | 6e-04 | ||
| 3kw2_A | 257 | Crystal Structure Of Probable Rrna-Methyltransferas | 7e-04 | ||
| 3kw2_A | 257 | Crystal Structure Of Probable Rrna-Methyltransferas | 7e-04 |
| >pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 | Back alignment and structure |
|
| >pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 | Back alignment and structure |
|
| >pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 | Back alignment and structure |
|
| >pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 | Back alignment and structure |
|
| >pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 | Back alignment and structure |
|
| >pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 | Back alignment and structure |
|
| >pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 | Back alignment and structure |
|
| >pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 | Back alignment and structure |
|
| >pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 | Back alignment and structure |
|
| >pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein Hi0303, Pfam Duf558 Length = 257 | Back alignment and structure |
|
| >pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein Hi0303, Pfam Duf558 Length = 257 | Back alignment and structure |
|
| >pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of Haemophilus Influenzae. Northeast Structural Genomics Consortium Target Ir73. Length = 246 | Back alignment and structure |
|
| >pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of Haemophilus Influenzae. Northeast Structural Genomics Consortium Target Ir73. Length = 246 | Back alignment and structure |
|
| >pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From E.Coli Length = 251 | Back alignment and structure |
|
| >pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From E.Coli Length = 251 | Back alignment and structure |
|
| >pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 | Back alignment and structure |
|
| >pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 | Back alignment and structure |
|
| >pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 | Back alignment and structure |
|
| >pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 | Back alignment and structure |
|
| >pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 | Back alignment and structure |
|
| >pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 | Back alignment and structure |
|
| >pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With The Pre-Transfer Editing Substrate Analogue, Val-Ams Length = 194 | Back alignment and structure |
|
| >pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 | Back alignment and structure |
|
| >pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 186 | Back alignment and structure |
|
| >pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 | Back alignment and structure |
|
| >pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 | Back alignment and structure |
|
| >pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L- Valine Length = 182 | Back alignment and structure |
|
| >pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 | Back alignment and structure |
|
| >pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Length = 182 | Back alignment and structure |
|
| >pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia Coli K12, At 1.9 A Resolution Length = 265 | Back alignment and structure |
|
| >pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase. The First Domain-Swapped Structure In The Cytidine Deaminase Superfamily Length = 164 | Back alignment and structure |
|
| >pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus Subtilis Northeast Structural Genomics Consortium Target Sr160 Length = 164 | Back alignment and structure |
|
| >pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 | Back alignment and structure |
|
| >pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein Length = 268 | Back alignment and structure |
|
| >pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein Length = 268 | Back alignment and structure |
|
| >pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 | Back alignment and structure |
|
| >pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 | Back alignment and structure |
|
| >pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446 From Staphylococcus Aureus. Northeast Structural Genomics Consortium Target Zr237. Length = 265 | Back alignment and structure |
|
| >pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To Transition State Analogue Hpy Length = 161 | Back alignment and structure |
|
| >pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant Length = 161 | Back alignment and structure |
|
| >pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant Length = 161 | Back alignment and structure |
|
| >pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To 4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms. Length = 161 | Back alignment and structure |
|
| >pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Length = 158 | Back alignment and structure |
|
| >pdb|4J3C|A Chain A, Crystal Structure Of 16s Ribosomal Rna Methyltransferase Rsme Length = 267 | Back alignment and structure |
|
| >pdb|4J3C|A Chain A, Crystal Structure Of 16s Ribosomal Rna Methyltransferase Rsme Length = 267 | Back alignment and structure |
|
| >pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 | Back alignment and structure |
|
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
| >pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus Length = 228 | Back alignment and structure |
|
| >pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus Length = 228 | Back alignment and structure |
|
| >pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 | Back alignment and structure |
|
| >pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 | Back alignment and structure |
|
| >pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 | Back alignment and structure |
|
| >pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 | Back alignment and structure |
|
| >pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 | Back alignment and structure |
|
| >pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 | Back alignment and structure |
|
| >pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 | Back alignment and structure |
|
| >pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 | Back alignment and structure |
|
| >pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 | Back alignment and structure |
|
| >pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 | Back alignment and structure |
|
| >pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 | Back alignment and structure |
|
| >pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme: Inorganic Zinc Bound Length = 161 | Back alignment and structure |
|
| >pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 | Back alignment and structure |
|
| >pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 | Back alignment and structure |
|
| >pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
|
| >pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
|
| >pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease (tm0667) From Thermotoga Maritima At 1.8 A Resolution Length = 268 | Back alignment and structure |
|
| >pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus Mutans Length = 184 | Back alignment and structure |
|
| >pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 | Back alignment and structure |
|
| >pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 | Back alignment and structure |
|
| >pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A Resolution Length = 234 | Back alignment and structure |
|
| >pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A Resolution Length = 234 | Back alignment and structure |
|
| >pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. Length = 197 | Back alignment and structure |
|
| >pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From Porphyromonas Gingivalis Length = 257 | Back alignment and structure |
|
| >pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From Porphyromonas Gingivalis Length = 257 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 | Back alignment and structure |
|---|
Score = 1341 bits (3472), Expect = 0.0
Identities = 345/936 (36%), Positives = 525/936 (56%), Gaps = 58/936 (6%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
G L +EP +KW + YH+ + + FILHDGPPYANG++H+GHA+NKILKD I
Sbjct: 18 GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFI 77
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLY--GKNLSPIEIQNKARALAYEKIEQQKM 1687
V++ M GF A YVPG+D HG+PIE + K K +S E + K + A E+IE QK
Sbjct: 78 VRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKK 137
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF RLG+ G++++ Y T+ EA ++R FG + KG +Y G KPV W +S+LAEAE
Sbjct: 138 DFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE 197
Query: 1748 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPE 1807
IEY K SIYV F+ + K + +IWT+TPWTIP+N A+ VHPE
Sbjct: 198 IEYHDKRSASIYVAFNVKDD---------KGVVDADAKFIIWTTTPWTIPSNVAITVHPE 248
Query: 1808 FDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNI 1864
Y ++ + I+A L + + + + G +L + HP
Sbjct: 249 LKYGQYNVNGE---KYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF--- 302
Query: 1865 DINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFI 1924
+R S + GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F
Sbjct: 303 ---LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFT 356
Query: 1925 STLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINM 1984
F GM KA+K + L + L ++ HSY H WR K P+I+R T QWF ++
Sbjct: 357 EEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASI 416
Query: 1985 DKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH 2044
K +R+ + AI F +WGK R+ +M+ +R +W ISRQR WGVP+ F +
Sbjct: 417 SK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVF-Y 467
Query: 2045 KKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFL-------GDDAVNYKKSNDTLD 2097
++G++ T E + +A +G IW + K+ L G + K D +D
Sbjct: 468 AENGEIIM-TKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMD 526
Query: 2098 VWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLT 2157
VWFDSG +H+ V+ + +L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+
Sbjct: 527 VWFDSGSSHRGVLE--TRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLS 584
Query: 2158 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
HGFV+D +GKKMSKS GN+I P ++ GA+I RLWV+STDY D+ IS+EIL + +
Sbjct: 585 HGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDD 644
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
YR+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 645 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 704
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+
Sbjct: 705 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 764
Query: 2338 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 2397
EE WS E++ K+ +V + LL K+ +R V + LE R+
Sbjct: 765 EEVWSHTPH-----VKEESVHLADMPKVVEV--DQALLDKWRTFMNLRDDVNRALETARN 817
Query: 2398 TGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEE-----CII 2451
+IG SL+A++ + N K + + L + S V + + I+
Sbjct: 818 EKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 877
Query: 2452 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
I+ + +KC RCW+Y D+G D+ LC RC +
Sbjct: 878 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 913
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 | Back alignment and structure |
|---|
Score = 1300 bits (3368), Expect = 0.0
Identities = 337/920 (36%), Positives = 515/920 (55%), Gaps = 59/920 (6%)
Query: 437 NGVWGEI-KASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPG 495
+ + + + FILHDGPPYANG++H+GHA+NKILKD IV++ M GF A YVPG
Sbjct: 34 EDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93
Query: 496 YDCHGMPIEIQIEKLY--GKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYK 553
+D HG+PIE + K K +S E + K + A E+IE QK DF RLG+ G++++ Y
Sbjct: 94 WDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYI 153
Query: 554 TMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFS 613
T+ EA ++R FG + KG +Y G KPV W +S+LAEAEIEY K SIYV F+
Sbjct: 154 TLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFN 213
Query: 614 FSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673
+ K + +IWT+TPWTIP+N A+ VHPE Y ++ +
Sbjct: 214 VKDD---------KGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGE---KY 261
Query: 674 ILAFNLVKSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 730
I+A L + + + + G +L + HP +R S + GD++
Sbjct: 262 IIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF------LDRESLVINGDHV 315
Query: 731 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASK 790
T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F F GM KA+K
Sbjct: 316 TTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANK 372
Query: 791 LICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAI 850
+ L + L ++ HSY H WR K P+I+R T QWF ++ K +R+ +
Sbjct: 373 AVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISK--------VRQDIL 424
Query: 851 TAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIEL 910
AI F +WGK R+ +M+ +R +W ISRQR WGVP+ F + ++G++ T E +
Sbjct: 425 DAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVF-YAENGEIIM-TKETVNH 482
Query: 911 IAKKIELNGIEIWQNLDIKEFL-------GDDAVNYKKSNDTLDVWFDSGITHQTVIRGS 963
+A +G IW + K+ L G + K D +DVWFDSG +H+ V+
Sbjct: 483 VADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE-- 540
Query: 964 HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSK 1023
+ +L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+HGFV+D +GKKMSKS
Sbjct: 541 TRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSL 600
Query: 1024 GNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTS 1083
GN+I P ++ GA+I RLWV+STDY D+ IS+EIL + + YR+IRNTLRF+L N +
Sbjct: 601 GNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN 660
Query: 1084 DFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143
DFNP+ + I S+++E+D+Y + + +++Y +++ I ++Q + + +L +FY
Sbjct: 661 DFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720
Query: 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES 1203
LD KD LY +++SH RRS QT ++ I + +L++PIL T+EE WS
Sbjct: 721 LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH-----VK 775
Query: 1204 GETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKI 1263
E++ K+ +V + LL K+ +R V + LE R+ +IG SL+A++ +
Sbjct: 776 EESVHLADMPKVVEV--DQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIAS 833
Query: 1264 N-KLDFEILNEFGEELKFFLLTSSVSLFQIKNLSEE-----CIIIKPSIYKKCNRCWHYQ 1317
N K + + L + S V + + I+I+ + +KC RCW+Y
Sbjct: 834 NDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYS 893
Query: 1318 ADVGERDDYPDLCNRCFNNL 1337
D+G D+ LC RC +
Sbjct: 894 EDLGAVDELTHLCPRCQQVV 913
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 766 bits (1980), Expect = 0.0
Identities = 204/796 (25%), Positives = 357/796 (44%), Gaps = 65/796 (8%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
K E + W+ +KI+ + + P++ +++GPP ANG H+GHA + KD+ +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPR 69
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG-------KNLSPIEIQNKARALAYEKIEQ 1684
+ M G+ A G+D HG+P+E+++EK G + R + ++
Sbjct: 70 YKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKE 129
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 1744
+ R+ + +++Y T++ + + +F +G +Y K V +C C + L+
Sbjct: 130 WEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLS 189
Query: 1745 EAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802
E+ YK+ D S+YV F EP K L K ++IWT+TPWT+P N A
Sbjct: 190 SHEVALGYKEIQDPSVYVRFPLKEP---------KKLGLEKASLLIWTTTPWTLPGNVAA 240
Query: 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLS 1862
VHPE+ YA + ++ LIL L + L + ++ G L + + P
Sbjct: 241 AVHPEYTYAAFQVGDE---ALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPY- 293
Query: 1863 NIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGN 1922
+ + L DY++ + GTGIVH APA+G ED + + ++ V ++G
Sbjct: 294 --PQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGK 348
Query: 1923 FISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFI 1982
+ F G+ +A++ I L+ LF E + HSY HCWR TP++Y T WFI
Sbjct: 349 L--LVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFI 406
Query: 1983 NMDKIPKNEKKSLRESAITAINKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAF 2041
++ I +I + P K+ R + N DW +SR R+WG P+
Sbjct: 407 KNTLF--------KDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPI 458
Query: 2042 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDI-KEFLGDDAV-------NYKKSN 2093
++ + GK E I + + + D + ++ D ++
Sbjct: 459 WVCQACGK-----EEAIGSFQELKARATKPLPEPFDPHRPYV-DQVELACACGGTMRRVP 512
Query: 2094 DTLDVWFDSGITHQTVIRGSHKKQ----LIFPADLYLEGSDQHRGWFHSSLLTSIILNKS 2149
+DVW+DSG + + + FPAD EG DQ RGWF+S ++L S
Sbjct: 513 YVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGS 572
Query: 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISN 2208
+K ++ HG ++D KG+KMSKSKGN++ P + FGA+ LR ++ S D
Sbjct: 573 IAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGP 632
Query: 2209 EILNRVV-ETYRRIRNTLRFLL--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 2265
++ V + + + N F + AN + N E+D++ + + +L + +
Sbjct: 633 NLVRETVRDYFLTLWNVYSFFVTYANLDRPDLK-NPPPPEKRPEMDRWLLARMQDLIQRV 691
Query: 2266 LSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSL 2325
Y+ L+ + EDL +Y+ + R + +++ R +A +++ +
Sbjct: 692 TEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW-KNEDALDREAAYATLYEALVLV 750
Query: 2326 LRLISPILSFTSEEAW 2341
L +P F +E W
Sbjct: 751 ATLAAPFTPFLAEVLW 766
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 743 bits (1921), Expect = 0.0
Identities = 199/775 (25%), Positives = 348/775 (44%), Gaps = 65/775 (8%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
++ P++ +++GPP ANG H+GHA + KD+ ++ M G+ A G+D HG+P
Sbjct: 31 VENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLP 90
Query: 503 IEIQIEKLYG-------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
+E+++EK G + R + ++ + R+ + +++Y T+
Sbjct: 91 VELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATL 150
Query: 556 DFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFS 613
+ + + +F +G +Y K V +C C + L+ E+ YK+ D S+YV F
Sbjct: 151 EPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFP 210
Query: 614 FSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673
EP K L K ++IWT+TPWT+P N A VHPE+ YA + ++ L
Sbjct: 211 LKEP---------KKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDE---AL 258
Query: 674 ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 733
IL L + L + ++ G L + + P + + L DY++ +
Sbjct: 259 ILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPY---PQALEKGYFVVLADYVSQE 312
Query: 734 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLIC 793
GTGIVH APA+G ED + + ++ V ++G + F G+ +A++ I
Sbjct: 313 DGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFREANRAIL 367
Query: 794 SYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAI 853
L+ LF E + HSY HCWR TP++Y T WFI ++ I
Sbjct: 368 RDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLF--------KDELIRNN 419
Query: 854 NKIKFFPSWGKD-RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912
+I + P K+ R + N DW +SR R+WG P+ ++ + GK E I
Sbjct: 420 QEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKE-----EAIGSFQ 474
Query: 913 KKIELNGIEIWQNLDI-KEFLGDDAV-------NYKKSNDTLDVWFDSGITHQTVIRGSH 964
+ + + D + ++ D ++ +DVW+DSG +
Sbjct: 475 ELKARATKPLPEPFDPHRPYV-DQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPF 533
Query: 965 KKQ----LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMS 1020
+ + FPAD EG DQ RGWF+S ++L S +K ++ HG ++D KG+KMS
Sbjct: 534 EHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMS 593
Query: 1021 KSKGNIIKPQKLCNLFGAEILRLWV-ASTDYSKDLSISNEILNRVV-ETYRRIRNTLRFL 1078
KSKGN++ P + FGA+ LR ++ S D ++ V + + + N F
Sbjct: 594 KSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFF 653
Query: 1079 L--ANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCS 1136
+ AN + N E+D++ + + +L + + Y+ L+ +
Sbjct: 654 VTYANLDRPDLK-NPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVV 712
Query: 1137 EDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAW 1191
EDL +Y+ + R + +++ R +A +++ + L +P F +E W
Sbjct: 713 EDLSQWYVRRNRRRFW-KNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLW 766
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 490 bits (1262), Expect = e-149
Identities = 138/899 (15%), Positives = 297/899 (33%), Gaps = 124/899 (13%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
E W K+W E KI+ + KF + PY +G +H+GHA + D+I +
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIAR 65
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKL--------------YGKNLSPIEIQNKARAL 1677
F M G++ + + G PI E++ Y + +
Sbjct: 66 FKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINI 125
Query: 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANE--LRAFGIIFKKGYVYHGLKPVNW 1735
++ K F+R G +W + T ++ F + +KGY+ G V W
Sbjct: 126 VKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRW 185
Query: 1736 CFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795
+ L + ++ + Y+ F E + I Y+ T P T
Sbjct: 186 DPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVI-----------YLPAATLRPET 234
Query: 1796 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKI 1855
+ + V+P Y ++ + L + +I KG KL
Sbjct: 235 VYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGK 294
Query: 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF-----LIFKKQNMKD 1910
+P+S ++ I +++ D+ TG+V S PA+ D L + + ++
Sbjct: 295 YVRNPVSGDEV------IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEK 348
Query: 1911 SDIINPVMDDGNFISTLPL----------------------------------------- 1929
DI ++++ +IS + L
Sbjct: 349 YDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKG 408
Query: 1930 ------FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFIN 1983
+ G + + + I + + + F + +I QWFI+
Sbjct: 409 IFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFID 468
Query: 1984 MDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI 2043
+E A A+ ++K P + + +++I +R+ G P+ +
Sbjct: 469 YGN------PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDP 522
Query: 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNY-----KKSNDTLDV 2098
L T+ + + +N + LD E L + +Y + ++
Sbjct: 523 EWVIESLSDSTIYMAYYTISRH-INKLRQEGKLDP-EKLTPEFFDYIFLEEFSEDKEKEL 580
Query: 2099 WFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 2158
+GI + + + + +P D G D + + + + + +
Sbjct: 581 EKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAV 640
Query: 2159 GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVET 2217
+G+KMSKSKGN++ GA+++RL++ S ++ D + + ++ +
Sbjct: 641 NGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQ 700
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
R + N + +ID++ + + KE + +
Sbjct: 701 IERFYELISQFAEYEVKGNVELK--------DIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
V FY + R Y + + + + + +RL++P
Sbjct: 753 VQWA----------FYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHIC 802
Query: 2338 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIR 2396
EE W + + + + + ++ + + ++ + + + +E +
Sbjct: 803 EELWEKLGGE-------GFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAK 854
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 468 bits (1206), Expect = e-141
Identities = 131/873 (15%), Positives = 287/873 (32%), Gaps = 124/873 (14%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
KF + PY +G +H+GHA + D+I +F M G++ + + G PI
Sbjct: 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 508 EKL--------------YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYK 553
E++ Y + + ++ K F+R G +W +
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFY 151
Query: 554 TMDFLNEANE--LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611
T ++ F + +KGY+ G V W + L + ++ + Y+
Sbjct: 152 TTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYII 211
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F E + I Y+ T P T+ + V+P Y ++
Sbjct: 212 IKFELRENGEVI-----------YLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKE 260
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
+ L + +I KG KL +P+S ++ I +++
Sbjct: 261 ETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEV------IILPAEFVD 314
Query: 732 VDSGTGIVHSAPAYGIEDF-----LIFKKQNMKDSDIINPVMDDGNFISTLPL------- 779
D+ TG+V S PA+ D L + + ++ DI ++++ +IS + L
Sbjct: 315 PDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFP 374
Query: 780 ----------------------------------------FGGMSIWKASKLICSYLKKS 799
+ G + + + I + +
Sbjct: 375 AVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEK 434
Query: 800 KTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFF 859
+ F + +I QWFI+ +E A A+ ++K
Sbjct: 435 GIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGN------PEWKEKARKALERMKIL 488
Query: 860 PSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919
P + + +++I +R+ G P+ + L T+ + + +N
Sbjct: 489 PETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRH-INK 547
Query: 920 IEIWQNLDIKEFLGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADL 974
+ LD E L + +Y + ++ +GI + + + + +P D
Sbjct: 548 LRQEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDW 606
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 1034
G D + + + + + + +G+KMSKSKGN++
Sbjct: 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE 666
Query: 1035 LFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 1093
GA+++RL++ S ++ D + + ++ + R + N +
Sbjct: 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELK--- 723
Query: 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYT 1153
+ID++ + + KE + + V FY + R Y
Sbjct: 724 -----DIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSIMNDLRWYL 768
Query: 1154 TKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHY 1213
+ + + + + +RL++P EE W + +
Sbjct: 769 RRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-------GFVSLAKWP 821
Query: 1214 KLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIR 1246
+ + + ++ + + ++ + + + +E +
Sbjct: 822 EPVEEWWNETIEAEEEFIRSVMEDIKEIIEVAK 854
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 457 bits (1176), Expect = e-139
Identities = 136/845 (16%), Positives = 279/845 (33%), Gaps = 117/845 (13%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
E W K+W E KI+ + KF + PY +G +H+GHA + D+I +
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIAR 65
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKL--------------YGKNLSPIEIQNKARAL 1677
F M G++ + + G PI E++ Y + +
Sbjct: 66 FKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINI 125
Query: 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNE--ANELRAFGIIFKKGYVYHGLKPVNW 1735
++ K F+R G +W + T F + +KGY+ G V W
Sbjct: 126 VKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRW 185
Query: 1736 CFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWT 1795
+ L + ++ + Y+ F E + I Y+ T P T
Sbjct: 186 DPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVI-----------YLPAATLRPET 234
Query: 1796 IPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKI 1855
+ + V+P Y ++ + L + +I KG KL
Sbjct: 235 VYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGK 294
Query: 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF-----LIFKKQNMKD 1910
+P+S ++ I +++ D+ TG+V S PA+ D L + + ++
Sbjct: 295 YVRNPVSGDEV------IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEK 348
Query: 1911 SDIINPVMDDGNFISTLPL----------------------------------------- 1929
DI ++++ +IS + L
Sbjct: 349 YDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKG 408
Query: 1930 ------FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFIN 1983
+ G + + + I + + + F + +I QWFI+
Sbjct: 409 IFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFID 468
Query: 1984 MDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI 2043
+E A A+ ++K P + + +++I +R+ G P+ +
Sbjct: 469 YG------NPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDP 522
Query: 2044 HKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNY-----KKSNDTLDV 2098
L T+ + + +N + LD ++ L + +Y + ++
Sbjct: 523 EWVIESLSDSTIYMAYYTISRH-INKLRQEGKLDPEK-LTPEFFDYIFLEEFSEDKEKEL 580
Query: 2099 WFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH 2158
+GI + + + + +P D G D + + + + + +
Sbjct: 581 EKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAV 640
Query: 2159 GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVET 2217
+G+KMSKSKGN++ GA+++RL++ S ++ D + + ++ +
Sbjct: 641 NGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQ 700
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
R + N + +ID++ + + KE + +
Sbjct: 701 IERFYELISQFAEYEVKGNVELK--------DIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
V FY + R Y + + + + + +RL++P
Sbjct: 753 VQWA----------FYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHIC 802
Query: 2338 EEAWS 2342
EE W
Sbjct: 803 EELWE 807
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-132
Identities = 129/819 (15%), Positives = 269/819 (32%), Gaps = 117/819 (14%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
KF + PY +G +H+GHA + D+I +F M G++ + + G PI
Sbjct: 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 508 EKL--------------YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYK 553
E++ Y + + ++ K F+R G +W +
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFY 151
Query: 554 TMDFLNE--ANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611
T F + +KGY+ G V W + L + ++ + Y+
Sbjct: 152 TTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYII 211
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPL 671
F E + I Y+ T P T+ + V+P Y ++
Sbjct: 212 IKFELRENGEVI-----------YLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKE 260
Query: 672 LLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYIT 731
+ L + +I KG KL +P+S ++ I +++
Sbjct: 261 ETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEV------IILPAEFVD 314
Query: 732 VDSGTGIVHSAPAYGIEDF-----LIFKKQNMKDSDIINPVMDDGNFISTLPL------- 779
D+ TG+V S PA+ D L + + ++ DI ++++ +IS + L
Sbjct: 315 PDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFP 374
Query: 780 ----------------------------------------FGGMSIWKASKLICSYLKKS 799
+ G + + + I + +
Sbjct: 375 AVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEK 434
Query: 800 KTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFF 859
+ F + +I QWFI+ +E A A+ ++K
Sbjct: 435 GIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGN------PEWKEKARKALERMKIL 488
Query: 860 PSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919
P + + +++I +R+ G P+ + L T+ + + +N
Sbjct: 489 PETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRH-INK 547
Query: 920 IEIWQNLDIKEFLGDDAVNY-----KKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADL 974
+ LD ++ L + +Y + ++ +GI + + + + +P D
Sbjct: 548 LRQEGKLDPEK-LTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDW 606
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 1034
G D + + + + + + +G+KMSKSKGN++
Sbjct: 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE 666
Query: 1035 LFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 1093
GA+++RL++ S ++ D + + ++ + R + N +
Sbjct: 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELK--- 723
Query: 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYT 1153
+ID++ + + KE + + V FY + R Y
Sbjct: 724 -----DIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSIMNDLRWYL 768
Query: 1154 TKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWS 1192
+ + + + + +RL++P EE W
Sbjct: 769 RRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWE 807
|
| >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Length = 257 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 6e-82
Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 3/246 (1%)
Query: 200 INIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI- 257
+++++ R Y+PI YL ++ NH+ VLR+ + LF+G Y AK+I
Sbjct: 1 MSLRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESN 60
Query: 258 KKKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQ 317
KK + ++I+ + E I L Q + + + I+KSVELGV +I P+ + RC ++
Sbjct: 61 KKSVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVK 120
Query: 318 LNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKK 377
L+ ER+ KK +W+ I I+A EQ GRNI+P + P + +W ++ L PR
Sbjct: 121 LDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYS 180
Query: 378 LSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
+ V LLIG EGG + +E + G + LGKR+LRTETASL A++ L
Sbjct: 181 IKT-LPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQ 239
Query: 438 GVWGEI 443
+G++
Sbjct: 240 ICFGDL 245
|
| >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Length = 257 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-54
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
Q + + + I+KSVELGV +I P+ + RC ++L+ ER+ KK +W+ I I+A EQ
Sbjct: 85 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQC 144
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GRNI+P + P + +W ++ L PR + V LLIG EGG +
Sbjct: 145 GRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT-LPTIPAGGVRLLIGSEGGLS 203
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
+E + G + LGKR+LRTETASL A++ L
Sbjct: 204 AQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICF 242
|
| >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Length = 268 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 1e-75
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 12/253 (4%)
Query: 204 MLRFY---YPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-K 258
+ R++ + V+H+ NV+R+ + II + G E +L S+ K
Sbjct: 3 LQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 62
Query: 259 KKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQL 318
K+ +I + ELP + + LP+ K + II+K ELG P R +++L
Sbjct: 63 DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 122
Query: 319 NNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILL-------S 371
++++ KKR RW I A EQS RN +P + F L + ++
Sbjct: 123 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 182
Query: 372 PRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLV 431
+ ++ + ++ GPEGG TE E E + LG RILRTETA L
Sbjct: 183 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLY 242
Query: 432 ALAILNGVWGEIK 444
AL+ ++ ++
Sbjct: 243 ALSAISYQTELLR 255
|
| >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Length = 268 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 1e-51
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
LP+ K + II+K ELG P R +++L++++ KKR RW I A EQS
Sbjct: 86 ASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQS 145
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILL-------SPRGRKKLSCWANNQSPQEVELLI 1526
RN +P + F L + ++ + ++ + ++
Sbjct: 146 YRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVF 205
Query: 1527 GPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
GPEGG TE E E + LG RILRTETA L AL+ ++ +
Sbjct: 206 GPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQT 251
|
| >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Length = 228 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 2e-72
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 10/233 (4%)
Query: 210 PIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQIISF 268
F G LP HL VLR + + +F+G E +A+++ + + +++
Sbjct: 4 HRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDG-EREALAEVVDLGPPLRYRVLEE 62
Query: 269 LFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRI 328
E E+ + L AL + K ++ + ELG IQP++T + + E K
Sbjct: 63 RRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGE---GKLR 119
Query: 329 RWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQ 388
R + + + A +QSGR ++P + P I ++ ++ +
Sbjct: 120 RLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVA---QGLVAHVGATARVR--EVLDPEK 174
Query: 389 EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWG 441
+ L +GPEGGF E+E L G +SLG+RILR ETA+L LA+ G
Sbjct: 175 PLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEG 227
|
| >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Length = 228 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 4e-50
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
AL + K ++ + ELG IQP++T + + E K R + + + A +QS
Sbjct: 76 YVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGE---GKLRRLRAVALEAAKQS 132
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GR ++P + P I ++ ++ + + L +GPEGGF
Sbjct: 133 GRVVVPEVLPPIPLKAVPQVA---QGLVAHVGATARVR--EVLDPEKPLALAVGPEGGFA 187
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
E+E L G +SLG+RILR ETA+L LA+
Sbjct: 188 EEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGE 226
|
| >1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima} Length = 234 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 3e-70
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 20/245 (8%)
Query: 200 INIKMLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISI-K 258
+ M +Y + + +H+ V+R+K + I +G G Y L S+ K
Sbjct: 9 HHHHMPHLFYGTA--QNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKK 66
Query: 259 KKILIQIISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQL 318
K +I+ +E E +++V + + +IEK VELGV I R ++
Sbjct: 67 KTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEI 126
Query: 319 NNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL 378
+ + + K ++ A +Q R + P ++ I L + L
Sbjct: 127 SLD-------KAKIVVREAAKQCKRYLFPKVSFLEKLEFSG------NVITLDLDASQNL 173
Query: 379 SCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438
+ + +++GPEGGF+EKE L I+SLGK+ILR ETA+++ + +
Sbjct: 174 ---LDANLEGSITVVVGPEGGFSEKERELL-RSSTTIVSLGKKILRFETAAILTVGYIAL 229
Query: 439 VWGEI 443
+I
Sbjct: 230 KKQKI 234
|
| >1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima} Length = 234 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 6e-44
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
+ + + +IEK VELGV I R +++ + + K ++ A +Q
Sbjct: 90 VVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLD-------KAKIVVREAAKQC 142
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
R + P ++ I L + L + + +++GPEGGF+
Sbjct: 143 KRYLFPKVSFLEKLEFSG------NVITLDLDASQNL---LDANLEGSITVVVGPEGGFS 193
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
EKE L I+SLGK+ILR ETA+++ + + +
Sbjct: 194 EKERELL-RSSTTIVSLGKKILRFETAAILTVGYIALKK 231
|
| >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} Length = 257 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 4e-70
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 20/253 (7%)
Query: 200 INIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI- 257
+++ + FY P I Q LPD+ H+ VLR++ + + L +G G + A + +
Sbjct: 1 MSLSLPLFYAPD---IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETAD 57
Query: 258 KKKILIQIISFLFREIELPYTITLVQALP-ENRKFDLIIEKSVELGVKIIQPIITNRCII 316
+K + + + IT+ A ++ + + ++EK VE+GV + I +
Sbjct: 58 RKSCYVSVCGQESWQKPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHS-- 115
Query: 317 QLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL-ISKISCARILLSPRGR 375
ER K R + I ISA +QS + PV+ NI + + + R++
Sbjct: 116 ----ERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEA 171
Query: 376 KKLSCWANNQ-------SPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETA 428
+ Q+V +LIGPEG F+ E A G +SLG+ LRTETA
Sbjct: 172 VRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETA 231
Query: 429 SLVALAILNGVWG 441
LVA ++ +
Sbjct: 232 GLVACQWIHTLQA 244
|
| >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} Length = 257 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-45
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 1415 QALP-ENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
A ++ + + ++EK VE+GV + I + ER K R + I ISA +QS
Sbjct: 83 IAPTKQSERMEWMLEKLVEIGVDEVVFIESEHS------ERRRIKAERLERIAISAMKQS 136
Query: 1474 GRNILPVLAPNIYFNNWL-ISKISCARILLSPRGRKKLSCWANNQ-------SPQEVELL 1525
+ PV+ NI + + + R++ + Q+V +L
Sbjct: 137 LKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLIL 196
Query: 1526 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
IGPEG F+ E A G +SLG+ LRTETA LVA ++
Sbjct: 197 IGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIH 240
|
| >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 7e-69
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVP+GA++ K++ VI+ +N + T PTAHAE IA+ A+K+L ++R
Sbjct: 18 AKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLE-G 76
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+
Sbjct: 77 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVL 136
Query: 177 QKQCEKLLKSFFIKRRNFVKNKSIN 201
++ C LL +FF R KS N
Sbjct: 137 KEACSTLLTTFFKNLRA--NKKSTN 159
|
| >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 8e-32
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+++ C L
Sbjct: 84 EPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTL 143
Query: 1399 LKSFFIKRR 1407
L +FF R
Sbjct: 144 LTTFFKNLR 152
|
| >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 2e-68
Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+ALR ++ NYR +
Sbjct: 20 AKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLI-D 78
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++
Sbjct: 79 ATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGIL 138
Query: 177 QKQCEKLLKSFFIKRR 192
+C LL FF RR
Sbjct: 139 ADECAALLSDFFRMRR 154
|
| >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++ +C L
Sbjct: 86 EPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAAL 145
Query: 1399 LKSFFIKRRNFVKNKIQA 1416
L FF RR +K + +A
Sbjct: 146 LSDFFRMRRQEIKAQKKA 163
|
| >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 8e-68
Identities = 43/136 (31%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
++ +L E+P+G V+VK+ +I G+N + N HAE++A+ A+ N+R +
Sbjct: 27 SEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLL-D 85
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++VT+EPC MC+GAI R+ +IYG + K G S+ + +++LNH + G++
Sbjct: 86 TTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLL 145
Query: 177 QKQCEKLLKSFFIKRR 192
C ++++FF + R
Sbjct: 146 AADCANIMQTFFRQGR 161
|
| >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 8e-32
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MC+GAI R+ +IYG + K G S+ + +++LNH + G++ C +
Sbjct: 93 EPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANI 152
Query: 1399 LKSFFIKRRNFVKNKIQALPENRKFD 1424
+++FF + R + KI + D
Sbjct: 153 MQTFFRQGRE--RKKIAKHLIKEQSD 176
|
| >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* Length = 229 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 8e-68
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 204 MLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISI-KKKIL 262
M FY G L L + V H V R++ + + G Y+ K+ K++I
Sbjct: 1 MHVFY--SEERRGNLLILREGEVKHFRVRRIEKDEEFGVIHE-GKIYVCKVRREDKREIS 57
Query: 263 IQIISFLFREIELPYTITLVQALPENRK-FDLIIEKSVELGVKIIQPIITNRCIIQLNNE 321
+I+ L P ITL Q++ + K D I+ ++ ELGV PII+ R + E
Sbjct: 58 CEIVEEL-ETKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--E 114
Query: 322 RIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCW 381
I+KK +WK I+I A +QS R I + + ++ + + IL + K
Sbjct: 115 AILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLI-PESEENIILDNFYEGVKPK-- 171
Query: 382 ANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
N + +++GPEGGF+++E + E G + L LRTETA + ++IL
Sbjct: 172 DVNLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILM 227
|
| >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* Length = 229 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-46
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 1414 IQALPENRK-FDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQ 1472
Q++ + K D I+ ++ ELGV PII+ R + E I+KK +WK I+I A +Q
Sbjct: 76 YQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--EAILKKTEKWKRIVIEAMKQ 133
Query: 1473 SGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGF 1532
S R I + + ++ + + IL + K N + +++GPEGGF
Sbjct: 134 SRRPIPMEIKKPVRLSDLI-PESEENIILDNFYEGVKPK--DVNLEAKTYSVVVGPEGGF 190
Query: 1533 TEKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
+++E + E G + L LRTETA + ++IL
Sbjct: 191 SKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILM 227
|
| >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 2e-66
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVPVGA++VK +IS +N DPTAHAE++A++ A + LN
Sbjct: 34 AKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLE-G 92
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++YVTLEPC MC+ A++ R+ ++I+ K G S+ N+ E LNH +
Sbjct: 93 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL 152
Query: 177 QKQCEKLLKSFFIKRRN 193
+ + +LL FF K RN
Sbjct: 153 E-EASELLSEFFKKLRN 168
|
| >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MC+ A++ R+ ++I+ K G S+ N+ E LNH ++ + +L
Sbjct: 100 EPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLE-EASEL 158
Query: 1399 LKSFFIKRRNFVKNKI 1414
L FF K R N I
Sbjct: 159 LSEFFKKLR---NNII 171
|
| >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 9e-65
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
A+ A EVP+GAVLV + VI+ N+ ND TAHAEI +RMA + L R
Sbjct: 15 ARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLP-G 73
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCA AI R+ + YG K GA S + F + +H + G+
Sbjct: 74 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLA 133
Query: 177 QKQCEKLLKSF 187
+ + ++L+ F
Sbjct: 134 ESESAEILRQF 144
|
| >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-28
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
EPC MCA AI R+ + YG K GA S + F + +H + G+ + + ++
Sbjct: 81 EPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEI 140
Query: 1399 LKSF 1402
L+ F
Sbjct: 141 LRQF 144
|
| >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 2e-62
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMA------SKLLNN 110
AK AL EVPVG ++V NN V+ G N+ + T HAE++A+ S +
Sbjct: 37 AKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPS 96
Query: 111 YRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLN--HH 168
F + +YVT+EPC MCA A+ +++ ++YG + + G CGS++N+ N
Sbjct: 97 EVFE-HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRP 155
Query: 169 TILTGGVMQKQCEKLLKSFFIKRRNFVKNK 198
G ++ ++LK+F+ +
Sbjct: 156 FQCIPGYRAEEAVEMLKTFYKQENPNAPKS 185
|
| >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLN--HHTILTGGVMQKQCE 1396
EPC MCA A+ +++ ++YG + + G CGS++N+ N G ++
Sbjct: 109 EPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAV 168
Query: 1397 KLLKSFFIKRRNFVKNK 1413
++LK+F+ +
Sbjct: 169 EMLKTFYKQENPNAPKS 185
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 1e-57
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 666
S+YV F +K K L K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 5 SVYVRF------PLKE---PKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 55
Query: 667 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 726
++ LIL L + L + ++ G L + + P + + L
Sbjct: 56 DE---ALILEEGLGRKLLGE---GTPVLKTFPGKALEGLPYTPPY---PQALEKGYFVVL 106
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 786
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 107 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 161
Query: 787 KASKLICSYLKKSKTLFNIEMFEHS 811
+A++ I L+ LF E + HS
Sbjct: 162 EANRAILRDLRGRGLLFKEESYLHS 186
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 1e-57
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 1816
S+YV F +K K L K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 5 SVYVRF------PLKE---PKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 55
Query: 1817 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876
++ LIL L + L + ++ G L + + P + + L
Sbjct: 56 DE---ALILEEGLGRKLLGE---GTPVLKTFPGKALEGLPYTPPY---PQALEKGYFVVL 106
Query: 1877 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 1936
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 107 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 161
Query: 1937 KASKLICSYLKKSKTLFNIEMFEHS 1961
+A++ I L+ LF E + HS
Sbjct: 162 EANRAILRDLRGRGLLFKEESYLHS 186
|
| >2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 5e-53
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 57 AKLALIAGEVPVGAVLVK--NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
+ + A P A + + + L+I+ G N+ + AHAEI+AL +A L+ + S
Sbjct: 39 VRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLS 98
Query: 115 KNYK----IYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLN 166
+ + + EPC MC GA+I + ++ S A G +
Sbjct: 99 ADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEA 158
Query: 167 HHTILTGGVMQKQCEKLLKSFFIKRR 192
+T G+++ LL+ +
Sbjct: 159 RGITVTTGLLRDAACALLREYNACNG 184
|
| >2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 6e-22
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQ 1394
EPC MC GA+I + ++ S A G + +T G+++
Sbjct: 112 EPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDA 171
Query: 1395 CEKLLKSFFIKRR 1407
LL+ +
Sbjct: 172 ACALLREYNACNG 184
|
| >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 8e-53
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 35 SISLKNMLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDP 92
S+ M + D + A L G VP+G L+ K+ V+ G+N + +
Sbjct: 3 SMVTGGMASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSA 62
Query: 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGA 152
T H EI L +L + K+ +Y TL PC MC GAII + + G
Sbjct: 63 TLHGEISTLENCGRL-EGKVY-KDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSK 120
Query: 153 CGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKSI 200
EK L V ++C+K++K F +R + I
Sbjct: 121 G--------EKYLQTRGHEVVVVDDERCKKIMKQFIDERPQ-DWFEDI 159
|
| >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 8e-22
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398
PC MC GAII + + G EK L V ++C+K+
Sbjct: 92 SPCDMCTGAIIMYGIPRCVVGENVNFKSKG--------EKYLQTRGHEVVVVDDERCKKI 143
Query: 1399 LKSFFIKRR 1407
+K F +R
Sbjct: 144 MKQFIDERP 152
|
| >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 9e-44
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 57 AKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
A + AG P GAV+VK+ +I+ G N T NDPTAHAE+ A+R A K+L Y+
Sbjct: 22 ACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD- 80
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTIL 171
+ +Y + EPC MC GAI R + Y G I +
Sbjct: 81 DCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF 140
Query: 172 TGGVMQKQCEKLLKSFFIKRR 192
+ +++
Sbjct: 141 YQV-TLTEHLSPFQAWRNFAN 160
|
| >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-13
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQ 1394
EPC MC GAI R + Y G I + +
Sbjct: 89 EPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQV-TLTE 147
Query: 1395 CEKLLKSFFIKRR 1407
+++
Sbjct: 148 HLSPFQAWRNFAN 160
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 6e-38
Identities = 130/566 (22%), Positives = 217/566 (38%), Gaps = 140/566 (24%)
Query: 1571 ELSKR------EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKI 1624
+L K EP W +KW + + +P F++ PP G +H+GHA++
Sbjct: 2 DLPKAYDPKSVEPKWAEKWAKNPFVANPKS---GKPPFVIFMPPPNVTGSLHMGHALDNS 58
Query: 1625 LKDIIVKFYNMDGFDAQYVPGYDCH-GMPIEIQIEKLYGKNLSPIEIQNKARA-LAYEK- 1681
L+D ++++ M GF+A ++PG D H G+ ++ +E+L + + K R L EK
Sbjct: 59 LQDALIRYKRMRGFEAVWLPGTD-HAGIATQVVVERL-------LLKEGKTRHDLGREKF 110
Query: 1682 ---------------IEQQKMDFMRLGILGEWDNSYKTMD-FLNEANELRAFGIIFKKGY 1725
++Q K RLG +W TMD + A AF + +G
Sbjct: 111 LERVWQWKEESGGTILKQLK----RLGASADWSREAFTMDEKRSRA-VRYAFSRYYHEGL 165
Query: 1726 VYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGY 1785
Y + VNWC C++ L++ E+E + ++ L+ G G+
Sbjct: 166 AYRAPRLVNWCPRCETTLSDLEVETE----------------PTPGKLYTLRYEVEGGGF 209
Query: 1786 IVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI 1843
I I T P T+ A+QA+ VHPE D Y ++
Sbjct: 210 IEIATVRPETVFADQAIAVHPE-DERYR------------------------------HL 238
Query: 1844 IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIF 1903
+G K ++ PL+ + I PI + D GTG + PA+ D+ I
Sbjct: 239 LG--KRARI-------PLTEVWI------PILADPAVEKDFGTGALKVTPAHDPLDYEIG 283
Query: 1904 KKQNMKDSDIINPVMDDG--NFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 1961
++ +K +IN +G G+ ++A + +++ L E + +
Sbjct: 284 ERHGLKPVSVIN---LEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIA 340
Query: 1962 YMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFP-SWGKDRLK 2018
C R TPI Y QW++ M + L E + + I F P W K +
Sbjct: 341 LATCSRCGTPIEYAIFPQWWLRM--------RPLAEEVLKGLRRGDIAFVPERWKKVNMD 392
Query: 2019 SMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PKTLELIELIAKKIELNGIEIWQNLD 2077
+ N DW ISRQ WG I + + ++ P+ +E + +
Sbjct: 393 WL-ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKR--- 448
Query: 2078 IKEFLGDDAVNYKKSNDTLDVWFDSG 2103
D+ D D WF S
Sbjct: 449 ------DE--------DVFDTWFSSA 460
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 8e-35
Identities = 121/523 (23%), Positives = 201/523 (38%), Gaps = 131/523 (25%)
Query: 458 PPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH-GMPIEIQIEKLYGKNLS 516
PP G +H+GHA++ L+D ++++ M GF+A ++PG D H G+ ++ +E+L
Sbjct: 42 PPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD-HAGIATQVVVERL------ 94
Query: 517 PIEIQNKARA-LAYEK----------------IEQQKMDFMRLGILGEWDNSYKTMD-FL 558
+ + K R L EK ++Q K RLG +W TMD
Sbjct: 95 -LLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLK----RLGASADWSREAFTMDEKR 149
Query: 559 NEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPE 618
+ A AF + +G Y + VNWC C++ L++ E+E +
Sbjct: 150 SRA-VRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETE----------------P 192
Query: 619 KIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFD--YALVHIKNDPPLLLILA 676
++ L+ G G+I I T P T+ A+QA+ VHPE D Y
Sbjct: 193 TPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPE-DERYR--------------- 236
Query: 677 FNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGT 736
+++G K ++ PL+ + I PI + D GT
Sbjct: 237 ---------------HLLG--KRARI-------PLTEVWI------PILADPAVEKDFGT 266
Query: 737 GIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDG--NFISTLPLFGGMSIWKASKLICS 794
G + PA+ D+ I ++ +K +IN +G G+ ++A +
Sbjct: 267 GALKVTPAHDPLDYEIGERHGLKPVSVIN---LEGRMEGERVPEALRGLDRFEARRKAVE 323
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
+++ L E + + C R TPI Y QW++ M + L E + +
Sbjct: 324 LFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRM--------RPLAEEVLKGLR 375
Query: 855 --KIKFFP-SWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLH-PKTLELIEL 910
I F P W K + + N DW ISRQ WG I + + ++ P+ +E
Sbjct: 376 RGDIAFVPERWKKVNMDWL-ENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLED 434
Query: 911 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSG 953
+ + D+ D D WF S
Sbjct: 435 PTSCEACGSPRLKR---------DE--------DVFDTWFSSA 460
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-17
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSI 1056
P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR + +D+ +
Sbjct: 508 GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRL 567
Query: 1057 SNEILNRVVETYRR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 1112
+E R + N RF+L + F + ++ D++ ++
Sbjct: 568 DLRW----LEMARNFANKLYNAARFVLLSREGFQAKEDTPTLA-----DRFMRSRLSRGV 618
Query: 1113 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 1172
+EI + Y + ++ + +YL+ K L + ++ +
Sbjct: 619 EEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH------TLRTLEEVL 672
Query: 1173 QSLLRLISPILSFTSEEAWSIFSDKN 1198
LL+L+ P++ F + E + + K
Sbjct: 673 AVLLKLLHPMMPFLTSELYQALTGKE 698
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-17
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 20/206 (9%)
Query: 2148 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL-WVASTDYSKDLSI 2206
P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR + +D+ +
Sbjct: 508 GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRL 567
Query: 2207 SNEILNRVVETYRR----IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQ 2262
+E R + N RF+L + F + ++ D++ ++
Sbjct: 568 DLRW----LEMARNFANKLYNAARFVLLSREGFQAKEDTPTLA-----DRFMRSRLSRGV 618
Query: 2263 KEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHIN 2322
+EI + Y + ++ + +YL+ K L + ++ +
Sbjct: 619 EEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH------TLRTLEEVL 672
Query: 2323 QSLLRLISPILSFTSEEAWSIFSDKN 2348
LL+L+ P++ F + E + + K
Sbjct: 673 AVLLKLLHPMMPFLTSELYQALTGKE 698
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 37/263 (14%), Positives = 69/263 (26%), Gaps = 62/263 (23%)
Query: 609 YVGF-----SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALV 663
YVG + + ++ K Y+V T P T+ V P+ DY +
Sbjct: 3 YVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVF 62
Query: 664 HIKNDPPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 721
N + N+ L + G L P + N+
Sbjct: 63 DAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYA-----VNKN 117
Query: 722 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFK-----------KQNMKDSDII--NPVM 768
+ + + GTG+V P+ +DF+ + +++ +DI+
Sbjct: 118 LRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTE 177
Query: 769 DDGNF-----------------------------------ISTLPLFGGMSIWKASKLIC 793
G+ + + G + A +
Sbjct: 178 KYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVK 237
Query: 794 SYLKKSKTLFNIEM--FEHSYMH 814
L F EH + H
Sbjct: 238 QDLIDEGLAFVYNEPELEHHHHH 260
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 37/263 (14%), Positives = 69/263 (26%), Gaps = 62/263 (23%)
Query: 1759 YVGF-----SFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALV 1813
YVG + + ++ K Y+V T P T+ V P+ DY +
Sbjct: 3 YVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVF 62
Query: 1814 HIKNDPPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRL 1871
N + N+ L + G L P + N+
Sbjct: 63 DAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYA-----VNKN 117
Query: 1872 SPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFK-----------KQNMKDSDII--NPVM 1918
+ + + GTG+V P+ +DF+ + +++ +DI+
Sbjct: 118 LRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTE 177
Query: 1919 DDGNF-----------------------------------ISTLPLFGGMSIWKASKLIC 1943
G+ + + G + A +
Sbjct: 178 KYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVK 237
Query: 1944 SYLKKSKTLFNIEM--FEHSYMH 1964
L F EH + H
Sbjct: 238 QDLIDEGLAFVYNEPELEHHHHH 260
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 2e-32
Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 38/270 (14%)
Query: 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 668
Y L L ++V T P T+ V P+ Y N
Sbjct: 7 YTLLKL--KVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNG 64
Query: 669 PPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 726
+ A N+ K ++ G ++ + PL++ + Y +
Sbjct: 65 DIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIY-----VLP 119
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIF----KKQNMKDSDIINPVM---DDGNFISTLPL 779
I D GTG+V S P+ +D KKQ ++ I M + + +P
Sbjct: 120 MLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPG 179
Query: 780 FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPK 839
FG +S A + +S ++ K I + + + +D
Sbjct: 180 FGNLS---AVTICDELKIQS---------QNDREKLAEAKEKIYLKGFYEGIMLVDG--- 224
Query: 840 NEKKSLRESAITAINK--IKFFPSWGKDRL 867
+ + + K K G +
Sbjct: 225 -----FKGQKVQDVKKTIQKKMIDAGDALI 249
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 2e-32
Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 38/270 (14%)
Query: 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 1818
Y L L ++V T P T+ V P+ Y N
Sbjct: 7 YTLLKL--KVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNG 64
Query: 1819 PPLLL--ILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876
+ A N+ K ++ G ++ + PL++ + Y +
Sbjct: 65 DIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIY-----VLP 119
Query: 1877 GDYITVDSGTGIVHSAPAYGIEDFLIF----KKQNMKDSDIINPVM---DDGNFISTLPL 1929
I D GTG+V S P+ +D KKQ ++ I M + + +P
Sbjct: 120 MLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPG 179
Query: 1930 FGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPK 1989
FG +S A + +S ++ K I + + + +D
Sbjct: 180 FGNLS---AVTICDELKIQS---------QNDREKLAEAKEKIYLKGFYEGIMLVDG--- 224
Query: 1990 NEKKSLRESAITAINK--IKFFPSWGKDRL 2017
+ + + K K G +
Sbjct: 225 -----FKGQKVQDVKKTIQKKMIDAGDALI 249
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 2e-29
Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%)
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 622
EL + + ++ S + I+ + Y S + + I
Sbjct: 17 ELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFY--------SNPKNKAIFD 68
Query: 623 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI--LAFNLV 680
+ + K Y++ T P T+ V P Y +I D +++ A N+
Sbjct: 69 QLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMA 128
Query: 681 --KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGI 738
K + + I G L PLS + + I +D GTGI
Sbjct: 129 HQGLNNNKPFGELDFISEISGSDLLLATVRAPLSP-----YEQIFVLPLETIKMDKGTGI 183
Query: 739 VHSAPAYGIEDFLIFKKQNMKDSDI 763
V S P+ +D+ +K + I
Sbjct: 184 VTSVPSDAPDDYACYKDILENRNGI 208
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 2e-29
Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%)
Query: 1713 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 1772
EL + + ++ S + I+ + Y S + + I
Sbjct: 17 ELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFY--------SNPKNKAIFD 68
Query: 1773 IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI--LAFNLV 1830
+ + K Y++ T P T+ V P Y +I D +++ A N+
Sbjct: 69 QLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMA 128
Query: 1831 --KSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGI 1888
K + + I G L PLS + + I +D GTGI
Sbjct: 129 HQGLNNNKPFGELDFISEISGSDLLLATVRAPLSP-----YEQIFVLPLETIKMDKGTGI 183
Query: 1889 VHSAPAYGIEDFLIFKKQNMKDSDI 1913
V S P+ +D+ +K + I
Sbjct: 184 VTSVPSDAPDDYACYKDILENRNGI 208
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Length = 268 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A++ I+LGF + G VT+ ++ L++V+ + L+ +++ETD P+L P P R K
Sbjct: 169 DYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGK 226
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 Length = 265 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 5e-24
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 Length = 259 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 8e-23
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHR---- 56
SL A ++LG+ I G +T+ + + V+ + L ++L+ETD+P + +
Sbjct: 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPN 221
Query: 57 --AKLALIAGEV 66
+ A + +
Sbjct: 222 RPEQAARVFAVL 233
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Length = 265 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 1e-22
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 1 SLDVAREII-ELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
S ++A + +L FYIS G VTFKN+K ++V +S++ +L+ETD+PYLSP P+R K
Sbjct: 158 SPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGK 216
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} Length = 287 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-19
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 SLDVAREIIELGFYISFSG-IVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ ++L +I +G I + L ++G+I +++E+D+PYL P R K
Sbjct: 163 EREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPK 221
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} Length = 272 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 5e-19
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
VA E + G++ S + QK++ + L ++ +ETDSP L P +
Sbjct: 173 RPSVAMEGVRAGYFFSIPPSIIRSGQ--KQKLVKQLPLTSICLETDSPALG--PEKQV 226
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 Length = 264 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-17
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 SLDVAREIIELGFYISFSG-IVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ + + + G YI +G + + L++++ I + +LIETD+PYL P K
Sbjct: 161 TREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPK 219
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52
S+ R I LG + S T ++ ++ S+ +L ETD P+L
Sbjct: 153 SVTELRRAISLGCWFSVGP--TMVRTQKGAALIRSMPRDRVLTETDGPFLEL 202
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKLA 60
+ + A +I+L YI F+G + +V+ SI + ++IETD+P+ A
Sbjct: 176 TKEAAAALIDLDLYIGFNGCSLKTEA--NLEVLKSIPSEKLMIETDAPWCGVKSTHAGSK 233
Query: 61 LIAGEVPVGAVLVKNNLVISYGYNQQITRNDP--TAH-AEIIA 100
I P + + RN+P EI++
Sbjct: 234 YIRTAFPTKKKWESGHCLKD--------RNEPCHIIQILEIMS 268
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Length = 325 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 6e-16
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKLA 60
+ + +I+ G+ I +G S L VM I ++ + IETD PY A
Sbjct: 204 TEEEMNQILNEGWDIGVTG--NSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFK 261
Query: 61 LIAGEVPVGAVLVKNNLVISYGYNQQITRNDP--TAH-AEIIA 100
+ + VK Y Q+ RN+P A I++
Sbjct: 262 YLKEKDFG----VKVEKYQRNKYVQR--RNEPSNIIDIAIIMS 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 4e-15
Identities = 110/819 (13%), Positives = 212/819 (25%), Gaps = 304/819 (37%)
Query: 1381 NHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQP 1440
+HH G Q Q + +L F FV N FD K V+ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVF---EDAFVDN----------FDC---KDVQ---DMPKS 44
Query: 1441 IITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNIL-----PVLAPNIYFNNWLISKI 1495
I++ I + + + ++ VL N Y +L+S I
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRIN-Y--KFLMSPI 98
Query: 1496 SCARILLSPRGRKKLSC----WANNQS--------PQEVELLIGPEGGFTEKEENLAYEC 1543
+ S R + + +NQ Q L + L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAK 151
Query: 1544 GVII---LSLGKRILRTETASLVALAILNGELSKREPGWIKKWQEKKIYHQIRKASINRP 1600
V+I L GK + L+ ++ + I W + + N P
Sbjct: 152 NVLIDGVLGSGK-------TWVALDVCLSYKVQCKMDFKI-FW--------LNLKNCNSP 195
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
+ +L ++L+ ++ + D + D H I+++I
Sbjct: 196 ETVL------------------EMLQKLLYQ------IDPNWTSRSD-HSSNIKLRIH-- 228
Query: 1661 YGKNLSPIEIQNKARALAYEKIEQQKMDFMR-LGILGEWDNSYKTMDFLNEANELRAFGI 1719
IQ + R L K + L +L N + A AF
Sbjct: 229 --------SIQAELRRLLKSK------PYENCLLVL---LN-------VQNAKAWNAFN- 263
Query: 1720 IFKKGYVYHGLKPVNWCFDCK-------SALAEAEIEYKKKYDFSIYVGFSFSEPEKIKS 1772
CK + + + + + + E KS
Sbjct: 264 -----------------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KS 305
Query: 1773 IF------NLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILA 1826
+ ++LP + L +P
Sbjct: 306 LLLKYLDCRPQDLPR------------------EVLTTNP------------------RR 329
Query: 1827 FNLVKSCLKKFGFKGNIIGICKGIKLSKINFF-HPLSN-----IDINYNRLSPIYLGDYI 1880
+++ ++ L+ + + H + I+ + N L P
Sbjct: 330 LSIIAESIRDG--------------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM- 374
Query: 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASK 1940
+ + +F + I P L L W
Sbjct: 375 --------------F--DRLSVF----PPSAHI--P-------TILLSLI-----WFDVI 400
Query: 1941 -----LICSYLKKSKTLFNIEMFEHSY-MHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 1994
++ + L K +L + E + + IY K+ + +
Sbjct: 401 KSDVMVVVNKLHK-YSLVEKQPKESTISIP-------SIYLEL--------KVKLENEYA 444
Query: 1995 LRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFI--HKKSGKLHP 2052
L S + N K F S +I D +++ I H K+ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDD------LIPPYLD------QYF----YSHIGHHLKNIEHPE 488
Query: 2053 KTLELIEL------IAKKIELNGIEIWQNLDIKEFLGDDAVNYKK---SNDTLDVWFDSG 2103
+ + + +KI + + I L YK ND +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLVNA 547
Query: 2104 ITH------QTVIRGSHKK--QLIFPAD---LYLEGSDQ 2131
I + +I + ++ A+ ++ E Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-13
Identities = 94/677 (13%), Positives = 185/677 (27%), Gaps = 229/677 (33%)
Query: 166 NHHTILTGGVMQKQCEKLLKSF---FIKR----------RNFVKNKSI-NI-----KMLR 206
+HH G Q Q + +L F F+ ++ + + I +I +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 207 FYYPIPFIIGQYLYLPDNIVNHL--NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQ 264
+ L + +V VLR+ YK L + E S+ ++ I+
Sbjct: 64 TLR----LFWTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQP--SMMTRMYIE 114
Query: 265 IISFLFREIEL--PYTIT-------LVQALPENRKFDLIIE-------KSV--------- 299
L+ + ++ Y ++ L QAL E R ++ K+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 300 ------ELGV---KIIQPIITNRCIIQLNN--------------------ERIIKKRIRW 330
+ + + + L RI +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 331 KNIIISATEQSGRNILPVLAPNIYFNNWLISK--ISCARILLSPRGRKKLSCWANNQSPQ 388
+ ++ + N L VL N+ N + +SC +ILL+ R K+++ + + +
Sbjct: 235 RRLL---KSKPYENCLLVLL-NVQ-NAKAWNAFNLSC-KILLTTRF-KQVTDFLSAATTT 287
Query: 389 EVELLIGPEGGFTEKEENLAYECGVIILSLGKRI--LRTETASLVALAILNGVWGEIKAS 446
+ L T +E +++ L R L E + + + + I+
Sbjct: 288 HIS-LDHHSMTLTP-DEVK----SLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDG 340
Query: 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQ 506
+ H L II N
Sbjct: 341 LATWDNWKHVN--------------CDKLTTIIESSLN---------------------- 364
Query: 507 IEKLYGKNLSPIEIQNKARALAY----EKIEQQKMDFMRLGILGEWDNS--YKTMDFLNE 560
L P E + L+ I L ++ W + M +
Sbjct: 365 -------VLEPAEYRKMFDRLSVFPPSAHIPTI-----LLSLI--WFDVIKSDVMVVV-- 408
Query: 561 ANELRAFGIIFKKG----YVYHGL-----------------------KPVNWCFDCKSAL 593
N+L + ++ K+ + P + D
Sbjct: 409 -NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 594 AE------------AEIEYKKKYD-FS-IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 639
IE+ ++ F +++ F F E +KI+
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRH----------------- 509
Query: 640 TSTPWTIPANQALHVHPEFDYALVHI-KNDPPLLLILAFNLVKSCLKKFGFK-GNIIGIC 697
ST W + L+ + + +I NDP + + + + F K +
Sbjct: 510 DSTAWNASGS-ILNTLQQLKFYKPYICDNDP------KYERLVNAILDFLPKIEENLICS 562
Query: 698 KGIKLSKINFFHPLSNI 714
K L +I I
Sbjct: 563 KYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 4e-11
Identities = 100/788 (12%), Positives = 204/788 (25%), Gaps = 280/788 (35%)
Query: 266 ISFLFREIELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIK 325
+ F E + Y ++ + + K V+ + + I++ I + +
Sbjct: 7 MDFETGEHQYQYK-DILSVFEDAFVDNFDC-KDVQ---DMPKSILSKEEIDHIIMSKDAV 61
Query: 326 KRIRWKNIIISATEQSGRNIL-----PVLAPNIYFNNWLISKISCARILLSPRGRKKLSC 380
+ ++ VL N Y +L+S I + S R +
Sbjct: 62 SGTL---RLFWTLLSKQEEMVQKFVEEVLRIN-Y--KFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 381 ----WANNQS--------PQEVELLIGPEGGFTEKEENLAYECGVII---LSLGKRILRT 425
+ +NQ Q L + L V+I L GK +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 426 ETAS--LVALAILNGV-WGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 481
+ V + + W + + N P+ +L ++L+ ++ +
Sbjct: 169 DVCLSYKVQCKMDFKIFW--LNLKNCNSPETVL------------------EMLQKLLYQ 208
Query: 482 FYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMR 541
D + D H I+++I IQ + R L K +
Sbjct: 209 I------DPNWTSRSD-HSSNIKLRIH----------SIQAELRRLLKSK------PYEN 245
Query: 542 -LGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCK-------SAL 593
L +L N + A AF CK +
Sbjct: 246 CLLVL---LN-------VQNAKAWNAFN------------------LSCKILLTTRFKQV 277
Query: 594 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIF------NLKNLPSGKGYIVIWTSTPWTIP 647
+ + + + + E KS+ ++LP
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPR---------------- 320
Query: 648 ANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINF 707
+ L +P +++ ++ L+ +
Sbjct: 321 --EVLTTNP------------------RRLSIIAESIRDG--------------LATWDN 346
Query: 708 F-HPLSN-----IDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS 761
+ H + I+ + N L P + + +F +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKM---------------F--DRLSVF----PPSA 385
Query: 762 DIINPVMDDGNFISTLPLFGGMSIWKASK-----LICSYLKKSKTLFNIEMFEHSY-MHC 815
I P L L W ++ + L K +L + E + +
Sbjct: 386 HI--P-------TILLSLI-----WFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIP- 429
Query: 816 WRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRP 875
IY K+ + +L S + N K F S +I
Sbjct: 430 ------SIYLEL--------KVKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYL 469
Query: 876 DWTISRQRHWGVPIAFFI--HKKSGKLHPKTLELIEL------IAKKIELNGIEIWQNLD 927
D +++ I H K+ + + + + +KI + +
Sbjct: 470 D------QYF----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 928 IKEFLGDDAVNYKK---SNDTLDVWFDSGITH------QTVIRGSHKK--QLIFPAD--- 973
I L YK ND + I + +I + ++ A+
Sbjct: 520 ILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 974 LYLEGSDQ 981
++ E Q
Sbjct: 579 IFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 95/623 (15%), Positives = 195/623 (31%), Gaps = 142/623 (22%)
Query: 1861 LSNIDINYNRLSPIYLGDYIT-VDSGTGIVHSAPAYGIEDFL--IFKKQNMKDSDIINPV 1917
Y + ++ ++ D ++D I K+ + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDH------I 54
Query: 1918 MDDGNFIS-TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY---MHCWRH--KTP 1971
+ + +S TL LF W + S ++ F E+ +Y M + + P
Sbjct: 55 IMSKDAVSGTLRLF-----W----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 1972 -------IIYRTTL----QWFINMDKIPKNEK-KSLRESAITAINKIKFF-----PSWGK 2014
I R L Q F + + + + LR+ A+ + K GK
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGK 163
Query: 2015 DRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE--- 2071
+ + + + + + + F+++ K+ LE+++ + +I+ N
Sbjct: 164 TWVALDVCL--SYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 2072 ----IWQNLD-----IKEFLGDDAVNYKKSNDTLD-VW-------FDSGITHQTVI--RG 2112
I + ++ L Y+ L V F+ ++ + ++ R
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAKAWNAFN--LSCKILLTTRF 274
Query: 2113 SHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSA--PYKALLTHGFVVDSKG 2166
+ A D H SLL + + P + L T+ +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 2167 KKMS--------------KSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL- 2211
+ + II+ L L AE +++ + + I +L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 2212 ----NRVVETYRRIRNTL-RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 2266
+ + + N L ++ L P + I I + K + N L + I+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 2267 SHYRMYEFHMIVSKLQIYCSEDLGSFYLD--ILKDRLYTTKKNSHARRSAQTSIWHIN-- 2322
HY + + + S+DL YLD + K H R + ++
Sbjct: 451 DHYNI---------PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 2323 --QSLLRLISPILSFTSEEAWSIFSDKNFY---IESGETIFTQL-----HYKLPKVYNSK 2372
+ +R S + + + FY I + + +L + LPK
Sbjct: 502 FLEQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILDF-LPK-IEEN 558
Query: 2373 KLLYKYMILKKIRSKVMQKLEKI 2395
+ KY L +R +M + E I
Sbjct: 559 LICSKYTDL--LRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 5e-07
Identities = 92/636 (14%), Positives = 203/636 (31%), Gaps = 156/636 (24%)
Query: 903 KTLELIELIAKKIELNGIE--IW-----QNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGI 954
E+ +I K ++G W Q +++F+ + +NYK + S I
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--------FLMSPI 98
Query: 955 THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH------ 1008
+ +Q +Y+E D R + + + +++ PY L
Sbjct: 99 KTEQ-------RQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 1009 --GFVVDSKGKKMS---KS--KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 1061
++D G + K+ ++ K+ +I W+ + + +L
Sbjct: 150 AKNVLID--G--VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSP----ETVL 199
Query: 1062 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI--LSHY 1119
+ + +I + SD + NI + I ++Q E+ L
Sbjct: 200 EMLQKLLYQIDPNW----TSRSDHSSNI---------------KLRIHSIQAELRRLLKS 240
Query: 1120 RMYEFHMIVSKL-QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 1178
+ YE ++V L + ++ +F ++ L TT+ + + HI L
Sbjct: 241 KPYENCLLV--LLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHI-----SL 291
Query: 1179 ISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKV 1238
++ T +E S+ Y++ LP+ + +I + IR +
Sbjct: 292 DHHSMTLTPDEVKSLLLK---YLDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGL 341
Query: 1239 M-----QKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFF----LLTSSV-S 1288
+ + + T II SSL N L+ + + L F + + + S
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 1289 LFQIKNLSEECIIIKPSIYKKC--NRCW-------H--YQADVGERDDYPDLCNRCFNNL 1337
L + + +++ ++K + Y + ++ L ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 1338 FEPCAMCAGAII--------------HVRLGEIIYGTPSFKTGACGSIINL-FQEKKLNH 1382
P + +I H++ E F+ ++ F E+K+ H
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLDFRFLEQKIRH 509
Query: 1383 HTILTGGVMQKQCEKLLKSFFIKRRNFVKNKIQALPEN-RKFDLIIEKSVELGVKIIQPI 1441
+ L+ + N P+ R + I++ ++ +I
Sbjct: 510 DSTAWNAS--GSILNTLQQLKFYKPYICDND----PKYERLVNAILDFLPKIEENLI--C 561
Query: 1442 ITNRCIIQ--LNNERIIKKRIRWKNIIISATEQSGR 1475
+++ L E + I A +Q R
Sbjct: 562 SKYTDLLRIALMAED--------EAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-05
Identities = 69/442 (15%), Positives = 150/442 (33%), Gaps = 107/442 (24%)
Query: 2053 KTLELIELIAKKIELNGIE--IW-----QNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGI 2104
E+ +I K ++G W Q +++F+ + +NYK + S I
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--------FLMSPI 98
Query: 2105 THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH------ 2158
+ +Q +Y+E D R + + + +++ PY L
Sbjct: 99 KTEQ-------RQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 2159 --GFVVDSKGKKMS---KS--KGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEIL 2211
++D G + K+ ++ K+ +I W+ + + +L
Sbjct: 150 AKNVLID--G--VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSP----ETVL 199
Query: 2212 NRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI--LSHY 2269
+ + +I + SD + NI + I ++Q E+ L
Sbjct: 200 EMLQKLLYQIDPNW----TSRSDHSSNI---------------KLRIHSIQAELRRLLKS 240
Query: 2270 RMYEFHMIVSKL-QIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRL 2328
+ YE ++V L + ++ +F ++ L TT+ + + HI L
Sbjct: 241 KPYENCLLV--LLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHI-----SL 291
Query: 2329 ISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKV 2388
++ T +E S+ Y++ LP+ + +I + IR +
Sbjct: 292 DHHSMTLTPDEVKSLLLK---YLDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGL 341
Query: 2389 M-----QKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFF----LLTSSV-S 2438
+ + + T II SSL N L+ + + L F + + + S
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 2439 LFQIKNLSEECIIIKPSIYKKC 2460
L + + +++ ++K
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYS 415
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} Length = 261 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 4/52 (7%), Positives = 21/52 (40%)
Query: 3 DVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54
+ ++E ++I + +++ +++ + ++ +D+ Y
Sbjct: 164 ETLDMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGYRDVEI 215
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} Length = 401 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 2e-14
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAKLA 60
S ++++ L I ++ V+ I + +L+ETD+P+ A
Sbjct: 258 SAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQ 317
Query: 61 LIAG-------EVPVGAVLVKNNLVISYGYNQQIT---RNDPTAH----AEIIA 100
+A E P + KN L + RN+P + A +++
Sbjct: 318 YLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEP-CNMEQVAIVVS 370
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 7e-13
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 459 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 517
PYANG IH GH L DI V++ + G D ++ G D HG PI + K + SP
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK---EGRSP 67
Query: 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
EI ++ K+ F R I +D +T ++ F ++ G++
Sbjct: 68 REIVDEFHEQ-------IKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLV 118
Query: 578 HGLKPVNWCFDCKSALAEAEIE 599
+ +C K L + +
Sbjct: 119 KKVTKQAYCEHDKMFLPDRFVI 140
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 7e-13
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 1609 PYANGDIHIGHAVNKILK-DIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 1667
PYANG IH GH L DI V++ + G D ++ G D HG PI + K + SP
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK---EGRSP 67
Query: 1668 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
EI ++ K+ F R I +D +T ++ F ++ G++
Sbjct: 68 REIVDEFHEQ-------IKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLV 118
Query: 1728 HGLKPVNWCFDCKSALAEAEIE 1749
+ +C K L + +
Sbjct: 119 KKVTKQAYCEHDKMFLPDRFVI 140
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 77/408 (18%), Positives = 146/408 (35%), Gaps = 97/408 (23%)
Query: 819 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 878
PI +R + ++I M + K+ + + N SW ++ L+ +
Sbjct: 177 GRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKP-NVKNMVLSWIEEGLE-------ERA 228
Query: 879 ISRQRHWGVPIAFFIHKKSGKLH------P-----KTLELIELIAKKIELNGIEIWQNLD 927
I+R +WG+P+ GK+ P T+E + I K E + W N+D
Sbjct: 229 ITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWK--KYWLNID 286
Query: 928 IK----EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHR 983
+ F+G K N I + +PA +L +++
Sbjct: 287 GQTRVIHFIG-------KDN----------IPFHAIF---------WPA--FLMAYGKYK 318
Query: 984 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 1043
+ P + + ++ +GKK S S+ I + ++F A+ LR
Sbjct: 319 DEEVEAEWNL-------P-YDIPANEYL-TLEGKKFSTSRNWAIWVHEFLDVFPADYLRY 369
Query: 1044 WVASTD-YSKDLSIS---------NEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 1093
++ + ++D S E++N + R L F+ F+ + +
Sbjct: 370 YLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHR---ALTFVNRY---FDGVVP--E 421
Query: 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFH------MIVSKLQIYCSEDLGSFYLDIL 1147
++ E+D+ A+ I KE+ Y F M ++ G+ Y D
Sbjct: 422 RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--------SFGNRYFDHK 473
Query: 1148 KDRLYTTKKNSHARRSAQTSI-WHINQSLLRLISPILSFTSEEAWSIF 1194
+ + T K R +I I ++L L+ P L SE+ W +
Sbjct: 474 QP--WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLL 519
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 77/408 (18%), Positives = 146/408 (35%), Gaps = 97/408 (23%)
Query: 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWT 2028
PI +R + ++I M + K+ + + N SW ++ L+ +
Sbjct: 177 GRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKP-NVKNMVLSWIEEGLE-------ERA 228
Query: 2029 ISRQRHWGVPIAFFIHKKSGKLH------P-----KTLELIELIAKKIELNGIEIWQNLD 2077
I+R +WG+P+ GK+ P T+E + I K E + W N+D
Sbjct: 229 ITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWK--KYWLNID 286
Query: 2078 IK----EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHR 2133
+ F+G K N I + +PA +L +++
Sbjct: 287 GQTRVIHFIG-------KDN----------IPFHAIF---------WPA--FLMAYGKYK 318
Query: 2134 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193
+ P + + ++ +GKK S S+ I + ++F A+ LR
Sbjct: 319 DEEVEAEWNL-------P-YDIPANEYL-TLEGKKFSTSRNWAIWVHEFLDVFPADYLRY 369
Query: 2194 WVASTD-YSKDLSIS---------NEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIK 2243
++ + ++D S E++N + R L F+ F+ + +
Sbjct: 370 YLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHR---ALTFVNRY---FDGVVP--E 421
Query: 2244 ISDMVEIDKYAIINITNLQKEILSHYRMYEFH------MIVSKLQIYCSEDLGSFYLDIL 2297
++ E+D+ A+ I KE+ Y F M ++ G+ Y D
Sbjct: 422 RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--------SFGNRYFDHK 473
Query: 2298 KDRLYTTKKNSHARRSAQTSI-WHINQSLLRLISPILSFTSEEAWSIF 2344
+ + T K R +I I ++L L+ P L SE+ W +
Sbjct: 474 QP--WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLL 519
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-12
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L ++P
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPE 83
Query: 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 577
++ + ++ + DF I +DN + T N + + + G++
Sbjct: 84 QMIGEMS-------QEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIK 133
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-12
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++L ++P
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPE 83
Query: 1669 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727
++ + ++ + DF I +DN + T N + + + G++
Sbjct: 84 QMIGEMS-------QEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIK 133
|
| >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-11
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 30/132 (22%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VGAV+VK+ ++ G + + AHAE+ A+ MA + IYVTLEPC+
Sbjct: 38 VGAVVVKDGQIVGMGAHLKYGE----AHAEVHAIHMAGAHA------EGADIYVTLEPCS 87
Query: 128 M------CAGAIIHVRLGEIIYGT----PSFKTGACGSIINLFQEKKLNHHTI-LTGGVM 176
CA II+ + + P G I + I + G++
Sbjct: 88 HYGKTPPCAELIINSGIKRVFVAMRDPNPL----VAGRGI-----SMMKEAGIEVREGIL 138
Query: 177 QKQCEKLLKSFF 188
Q E+L + F
Sbjct: 139 ADQAERLNEKFL 150
|
| >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-11
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 68 VGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCA 127
VGAV+VK+ +I+ G++ HAE +A+ A K + R + + VTLEPC
Sbjct: 38 VGAVVVKDGRIIAEGFHPYFGG----PHAERMAIESARKKGEDLRGAT---LIVTLEPCD 90
Query: 128 M------CAGAIIHVRLGEIIYGT--PSFKTGACGSIINLFQEKKLNHHTI-LTGGVMQK 178
C II + ++ GT P+ +G + +K +H I + GV+++
Sbjct: 91 HHGKTPPCTDLIIESGIKTVVIGTRDPNPVSG--NGV------EKFRNHGIEVIEGVLEE 142
Query: 179 QCEKLLKSFF 188
+ +KL + F
Sbjct: 143 EVKKLCEFFI 152
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 5e-11
Identities = 87/443 (19%), Positives = 153/443 (34%), Gaps = 114/443 (25%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W EK+ + S + K+ PY +G +H+GH N + D+I ++ M
Sbjct: 31 ESKVQLHWDEKRTFEVTEDES--KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRM 88
Query: 1636 DGFDAQYV--P-GYDCHGMPIE---IQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDF 1689
G + V P G+D G+P E ++ N +P Y+ I K
Sbjct: 89 LGKN---VLQPIGWDAFGLPAEGAAVK------NNTAP-------APWTYDNIAYMKNQL 132
Query: 1690 MRLGILGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739
LG +W T F EL +KKG VY VNWC +
Sbjct: 133 KMLGFGYDWSRELATCTPEYYRWEQKFFT----EL------YKKGLVYKKTSAVNWCPND 182
Query: 1740 KSALA------------EAEIEYKK--KYDFSIYVGFSFSE------------PEKIKS- 1772
++ LA + ++E K+ ++ I ++++ P+ +K+
Sbjct: 183 QTVLANEQVIDGCCWRCDTKVERKEIPQWFIKIT---AYADELLNDLDKLDHWPDTVKTM 239
Query: 1773 -------------IFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 1819
FN+ + + ++T+ P T L V A +N+P
Sbjct: 240 QRNWIGRSEGVEITFNVND---YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP 296
Query: 1820 PLLLILAFNLVKSCLKKFGFKGNIIGICK-GIKLSKINFFHPLSNIDINYNRLSPIYLGD 1878
+ AF + C + + + K G+ HPL+ +I P++ +
Sbjct: 297 E---LAAF--IDECRNTKVAEAEMATMEKKGVDTG-FKAVHPLTGEEI------PVWAAN 344
Query: 1879 YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL--------- 1929
++ ++ GTG V + P + D+ K + +I +S L
Sbjct: 345 FVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 404
Query: 1930 --FGGMSIWKASKLICSYLKKSK 1950
F G+ A I L
Sbjct: 405 GEFNGLDHEAAFNAIADKLTAMG 427
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-07
Identities = 81/410 (19%), Positives = 143/410 (34%), Gaps = 112/410 (27%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--P-GYDCHGMPIE---IQIEKLYG 512
PY +G +H+GH N + D+I ++ M G + V P G+D G+P E ++
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKN---VLQPIGWDAFGLPAEGAAVK------ 112
Query: 513 KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----------FLNEAN 562
N +P Y+ I K LG +W T F
Sbjct: 113 NNTAP-------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFT---- 161
Query: 563 ELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA------------EAEIEYKK--KYDFSI 608
EL +KKG VY VNWC + ++ LA + ++E K+ ++ I
Sbjct: 162 EL------YKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKI 215
Query: 609 YVGFSFSE------------PEKIKS--------------IFNLKNLPSGKGYIVIWTST 642
++++ P+ +K+ FN+ + + ++T+
Sbjct: 216 T---AYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVND---YDNTLTVYTTR 269
Query: 643 PWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICK-GIK 701
P T L V A +N+P + AF + C + + + K G+
Sbjct: 270 PDTFMGCTYLAVAAGHPLAQKAAENNPE---LAAF--IDECRNTKVAEAEMATMEKKGVD 324
Query: 702 LSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDS 761
HPL+ +I P++ +++ ++ GTG V + P + D+ K +
Sbjct: 325 TG-FKAVHPLTGEEI------PVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIK 377
Query: 762 DIINPVMDDGNFISTLPL-----------FGGMSIWKASKLICSYLKKSK 800
+I +S L F G+ A I L
Sbjct: 378 PVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMG 427
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-05
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 975 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLC 1033
Y G + R W K KA G + G KMSKSK N I PQ +
Sbjct: 595 YYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMV 654
Query: 1034 NLFGAEILRL 1043
+GA+ +RL
Sbjct: 655 ERYGADTVRL 664
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-05
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 2125 YLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLC 2183
Y G + R W K KA G + G KMSKSK N I PQ +
Sbjct: 595 YYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMV 654
Query: 2184 NLFGAEILRL 2193
+GA+ +RL
Sbjct: 655 ERYGADTVRL 664
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 43/185 (23%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W + W+EK R K + PY +GD+H+GH N + D++ +F M
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPG-GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 1636 DGFDAQYV--P-GYDCHGMPIE---IQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDF 1689
G++ V P G+D G+P E ++ + P + Y I Q K
Sbjct: 69 QGYE---VLHPMGWDAFGLPAENAALK------FGVHP-------KDWTYANIRQAKESL 112
Query: 1690 MRLGILGEWDNSYKTMD----------FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739
+GIL +WD T + FL ++ ++KG Y VNWC C
Sbjct: 113 RLMGILYDWDREVTTCEPEYYRWNQWIFL----KM------WEKGLAYRAKGLVNWCPKC 162
Query: 1740 KSALA 1744
++ LA
Sbjct: 163 QTVLA 167
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 42/163 (25%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV--P-GYDCHGMPIE 504
R K + PY +GD+H+GH N + D++ +F M G++ V P G+D G+P E
Sbjct: 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE---VLHPMGWDAFGLPAE 87
Query: 505 ---IQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD----- 556
++ + P + Y I Q K +GIL +WD T +
Sbjct: 88 NAALK------FGVHP-------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYR 134
Query: 557 -----FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 594
FL ++ ++KG Y VNWC C++ LA
Sbjct: 135 WNQWIFL----KM------WEKGLAYRAKGLVNWCPKCQTVLA 167
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 55/192 (28%)
Query: 876 DWTISRQRHWGVPIAFFIHKKSGKLH-----------PKTLELIELIAKKIE-LNGIEIW 923
DW ISRQR+WG PI +H ++ + P ++ ++ K L +
Sbjct: 421 DWLISRQRYWGTPIP-MVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEF 479
Query: 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS---------HKKQLIF---- 970
+ G A K+ DT+D +FDS S H +L F
Sbjct: 480 YETTCPK-CGGPA---KRDTDTMDTFFDS----------SWYYLRYTDPHNDRLPFDPEK 525
Query: 971 -----PADLYLEGSDQH--------RGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 1017
P D Y+ G +H R +F L ++ P++ L T G V+
Sbjct: 526 ANAWMPVDQYI-GGVEHAVLHLLYSR-FFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDF 583
Query: 1018 KMSKSKGNIIKP 1029
+ +G++++
Sbjct: 584 GPVEVEGSVVRL 595
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 55/192 (28%)
Query: 2026 DWTISRQRHWGVPIAFFIHKKSGKLH-----------PKTLELIELIAKKIE-LNGIEIW 2073
DW ISRQR+WG PI +H ++ + P ++ ++ K L +
Sbjct: 421 DWLISRQRYWGTPIP-MVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEF 479
Query: 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGS---------HKKQLIF---- 2120
+ G A K+ DT+D +FDS S H +L F
Sbjct: 480 YETTCPK-CGGPA---KRDTDTMDTFFDS----------SWYYLRYTDPHNDRLPFDPEK 525
Query: 2121 -----PADLYLEGSDQH--------RGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK 2167
P D Y+ G +H R +F L ++ P++ L T G V+
Sbjct: 526 ANAWMPVDQYI-GGVEHAVLHLLYSR-FFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDF 583
Query: 2168 KMSKSKGNIIKP 2179
+ +G++++
Sbjct: 584 GPVEVEGSVVRL 595
|
| >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 67 PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPC 126
VG V+VK+ ++ GY + HAE+ ALRMA + K YVTLEPC
Sbjct: 53 NVGCVIVKDGEIVGEGY----HQRAGEPHAEVHALRMAGEKA------KGATAYVTLEPC 102
Query: 127 AM------CAGAIIHVRLGEIIYGT----PSFKTGACGSIINLFQEKKLNHHTI-LTGGV 175
+ C A+I + ++ P G + +L I ++ G+
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASMQDPNPQ----VAGRGL-----YRLQQAGIDVSHGL 153
Query: 176 MQKQCEKLLKSFF 188
M + E+L K F
Sbjct: 154 MMSEAEQLNKGFL 166
|
| >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 68 VGAVLVKNNLVISYGYN-------QQITRNDP--------TAHAEIIALRMASKLLNNYR 112
VGAVLVKNN +I+ GYN T HAE+ AL +K +
Sbjct: 63 VGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGIS-- 120
Query: 113 FSKNYKIYVTLEPCAMCAGAIIHVRLGEIIY 143
+ N +IYVT PC C A++ + +I Y
Sbjct: 121 -ANNTEIYVTHFPCINCTKALLQAGVKKITY 150
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 948 VWFDSGITHQTVI--RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAP 1001
VWFD+ + + + + + +P +L G D + H+ ++L + +
Sbjct: 226 VWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI---PM 280
Query: 1002 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEI 1060
Y+ L GF++ G+KMSK+ GN++ P L +G + LR ++ Y +D +S E
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEA 340
Query: 1061 L 1061
L
Sbjct: 341 L 341
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 2098 VWFDSGITHQTVI--RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAP 2151
VWFD+ + + + + + +P +L G D + H+ ++L + +
Sbjct: 226 VWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI---PM 280
Query: 2152 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEI 2210
Y+ L GF++ G+KMSK+ GN++ P L +G + LR ++ Y +D +S E
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEA 340
Query: 2211 L 2211
L
Sbjct: 341 L 341
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + + P
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA---AGEDPKA 69
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + + P
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA---AGEDPKA 69
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 3e-09
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D+I +++ + G + G D HG + ++ K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ---KQVSPYD 75
Query: 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 579
+ K F ++ D +T + ++A + + +KG +Y G
Sbjct: 76 -------FTTAVAGEFKKXFEQMDY--SIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 580 LKPVNWCFDCKSALAEAEIE 599
+ +S L I
Sbjct: 127 RYEGWYSISDESFLTPQNIT 146
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 3e-09
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D+I +++ + G + G D HG + ++ K +SP +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ---KQVSPYD 75
Query: 1670 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHG 1729
+ K F ++ D +T + ++A + + +KG +Y G
Sbjct: 76 -------FTTAVAGEFKKXFEQMDY--SIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 1730 LKPVNWCFDCKSALAEAEIE 1749
+ +S L I
Sbjct: 127 RYEGWYSISDESFLTPQNIT 146
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 38/203 (18%)
Query: 948 VWFDSGITHQTVI-------------RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 994
VW D+ + T + FPAD+++ G D + FH+ +
Sbjct: 242 VWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--FHAIYWPAF 299
Query: 995 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSK 1052
+L+ P K ++ HG+ KK+SKS GN+ P + FG + L+ + + + +S
Sbjct: 300 LLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
Query: 1053 DLSISNEILNRVVETYRRIRNTLRFLLANT----------SDFNPNINIIKISDMVEIDK 1102
D S++ + L LA+T + N N + E D+
Sbjct: 359 DGDYSDK----------NMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDE 408
Query: 1103 YAIINITNLQKEILSHYRMYEFH 1125
I I +L +Y + +
Sbjct: 409 SLIQLIKDLPGTADHYYLIPDIQ 431
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 38/203 (18%)
Query: 2098 VWFDSGITHQTVI-------------RGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSI 2144
VW D+ + T + FPAD+++ G D + FH+ +
Sbjct: 242 VWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--FHAIYWPAF 299
Query: 2145 ILNKSAP-YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW-VASTDYSK 2202
+L+ P K ++ HG+ KK+SKS GN+ P + FG + L+ + + + +S
Sbjct: 300 LLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
Query: 2203 DLSISNEILNRVVETYRRIRNTLRFLLANT----------SDFNPNINIIKISDMVEIDK 2252
D S++ + L LA+T + N N + E D+
Sbjct: 359 DGDYSDK----------NMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDE 408
Query: 2253 YAIINITNLQKEILSHYRMYEFH 2275
I I +L +Y + +
Sbjct: 409 SLIQLIKDLPGTADHYYLIPDIQ 431
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 948 VWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAPYK 1003
VWFD+ + + + + +PADL+L G D R FH+ + L S+ K
Sbjct: 229 VWFDALFNYISALEDKVEI--YWPADLHLVGKDILR--FHTVYWPAFLMSLGY---ELPK 281
Query: 1004 ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 1061
+ HG+ +GKKMSK+ GN++ P ++ +G + +R ++ + +D S + +
Sbjct: 282 KVFAHGWWT-VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI 339
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 2098 VWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSAPYK 2153
VWFD+ + + + + +PADL+L G D R FH+ + L S+ K
Sbjct: 229 VWFDALFNYISALEDKVEI--YWPADLHLVGKDILR--FHTVYWPAFLMSLGY---ELPK 281
Query: 2154 ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEIL 2211
+ HG+ +GKKMSK+ GN++ P ++ +G + +R ++ + +D S + +
Sbjct: 282 KVFAHGWWT-VEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI 339
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N H+GHA I D I ++Y + +D ++ G D HG+ I+ + E+ +SP E
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE---LGISPKE 71
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N H+GHA I D I ++Y + +D ++ G D HG+ I+ + E+ +SP E
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE---LGISPKE 71
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 948 VWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSA 1000
VW D+ + T + + ++ +PA+ ++ G D R FH+ + L S L
Sbjct: 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL---P 304
Query: 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNE 1059
K + HGF+ ++G+KMSKS GN+I P +L +G + LR ++ + +D S S+E
Sbjct: 305 LPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHE 363
Query: 1060 IL 1061
+
Sbjct: 364 AI 365
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 2098 VWFDSGITHQTVI---RGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILNKSA 2150
VW D+ + T + + ++ +PA+ ++ G D R FH+ + L S L
Sbjct: 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL---P 304
Query: 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNE 2209
K + HGF+ ++G+KMSKS GN+I P +L +G + LR ++ + +D S S+E
Sbjct: 305 LPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHE 363
Query: 2210 IL 2211
+
Sbjct: 364 AI 365
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-06
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y NG HIGHA I D + +F ++G D ++ G D HG+ + K + ++P +
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK---EGITPRD 91
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-06
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y NG HIGHA I D + +F ++G D ++ G D HG+ + K + ++P +
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK---EGITPRD 91
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 35/201 (17%)
Query: 948 VWFD------------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLL 991
VW D + H +PAD+++ G D + FH+ + L
Sbjct: 259 VWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FHAIYWPAFL 316
Query: 992 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDY 1050
S L + L++HG+ KK+SKS GN P + FG + L+ ++ +++
Sbjct: 317 MSAEL---PLPERLVSHGWWT-KDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372
Query: 1051 SKDLSISNEILNRVVETYRRIR----NTLRFLLANTSDF--NPNINIIKISDMVEIDKYA 1104
D S++ + R+ +TL L++ N N + ++ E DK
Sbjct: 373 QDDGDYSDKNM------VARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTL 426
Query: 1105 IINITNLQKEILSHYRMYEFH 1125
I ++ NL + +Y + +
Sbjct: 427 IASLNNLAGTVDHYYCLPDIQ 447
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 35/201 (17%)
Query: 2098 VWFD------------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLL 2141
VW D + H +PAD+++ G D + FH+ + L
Sbjct: 259 VWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FHAIYWPAFL 316
Query: 2142 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDY 2200
S L + L++HG+ KK+SKS GN P + FG + L+ ++ +++
Sbjct: 317 MSAEL---PLPERLVSHGWWT-KDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372
Query: 2201 SKDLSISNEILNRVVETYRRIR----NTLRFLLANTSDF--NPNINIIKISDMVEIDKYA 2254
D S++ + R+ +TL L++ N N + ++ E DK
Sbjct: 373 QDDGDYSDKNM------VARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTL 426
Query: 2255 IINITNLQKEILSHYRMYEFH 2275
I ++ NL + +Y + +
Sbjct: 427 IASLNNLAGTVDHYYCLPDIQ 447
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y N HIGH + ++ D++ +++ + G + + G D HG + K + +SP++
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK---QGVSPMD 92
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y N HIGH + ++ D++ +++ + G + + G D HG + K + +SP++
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK---QGVSPMD 92
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 948 VWFD------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILN 997
VW D +G+ S ++ +PADL++ G D R FH+ + L S L
Sbjct: 238 VWVDALTNYLTGVGFPDTESESFRR--YWPADLHMIGKDIIR--FHTVYWPAFLMSAGL- 292
Query: 998 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056
K + HG+++ ++G+KMSKS GN++ P L + FG + +R ++ + +D S
Sbjct: 293 --PLPKRIFAHGWLL-NRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSY 349
Query: 1057 SNEIL 1061
+ + +
Sbjct: 350 NEDAI 354
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 2098 VWFD------SGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHS----SLLTSIILN 2147
VW D +G+ S ++ +PADL++ G D R FH+ + L S L
Sbjct: 238 VWVDALTNYLTGVGFPDTESESFRR--YWPADLHMIGKDIIR--FHTVYWPAFLMSAGL- 292
Query: 2148 KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 2206
K + HG+++ ++G+KMSKS GN++ P L + FG + +R ++ + +D S
Sbjct: 293 --PLPKRIFAHGWLL-NRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSY 349
Query: 2207 SNEIL 2211
+ + +
Sbjct: 350 NEDAI 354
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-06
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 460 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 519
Y NG HIGHA I D I +F +DG+D +Y+ G D HG + K + + E
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK---EGIPAAE 78
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-06
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1610 YANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIE 1669
Y NG HIGHA I D I +F +DG+D +Y+ G D HG + K + + E
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK---EGIPAAE 78
|
| >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 27/98 (27%)
Query: 67 PVGAVLV-KNNLVISYGYN-------------QQITRNDP------TAHAEIIALRMASK 106
VGA +V N ++ GYN ++ N HAE+ A+
Sbjct: 33 QVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAI----- 87
Query: 107 LLNNYRFS-KNYKIYVTLEPCAMCAGAIIHVRLGEIIY 143
+N K +YV L PC CA II + E+I+
Sbjct: 88 -MNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIF 124
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
G + ++ +KMSKS GNII ++ E+LR ++ S Y LS S E L
Sbjct: 261 GLLEIN--KEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLA 318
Query: 1068 YRRIRNTLR 1076
R LR
Sbjct: 319 LERFYLALR 327
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
G + ++ +KMSKS GNII ++ E+LR ++ S Y LS S E L
Sbjct: 261 GLLEIN--KEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLA 318
Query: 2218 YRRIRNTLR 2226
R LR
Sbjct: 319 LERFYLALR 327
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIK-PQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
G + D G KMSKS+GN++ Q +RL + S Y +D SNE+L+
Sbjct: 283 GMIGWD--GHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANA 340
Query: 1067 TYRRIRNTLR 1076
R R+
Sbjct: 341 RLARWRSATA 350
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIK-PQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
G + D G KMSKS+GN++ Q +RL + S Y +D SNE+L+
Sbjct: 283 GMIGWD--GHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANA 340
Query: 2217 TYRRIRNTLR 2226
R R+
Sbjct: 341 RLARWRSATA 350
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
F+ +D KMSKS+GN I + L + F R ++ Y L S + L
Sbjct: 291 EFLIMD--YNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKI 348
Query: 1067 TYRRIRNTLRFLLANTSDFNPN 1088
+ N L + + + N
Sbjct: 349 ARENLINKLSYFYESLDPVDLN 370
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCN-LFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
F+ +D KMSKS+GN I + L + F R ++ Y L S + L
Sbjct: 291 EFLIMD--YNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKI 348
Query: 2217 TYRRIRNTLRFLLANTSDFNPN 2238
+ N L + + + N
Sbjct: 349 ARENLINKLSYFYESLDPVDLN 370
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1009 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 1067
G V VD +KMSKS GN + + + AE +R ++ S Y L+ S E L +
Sbjct: 258 GMVMVD--REKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
Query: 1068 YRRIRNTLRFL 1078
R+ LR
Sbjct: 316 LERLYTALRGT 326
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 2159 GFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVET 2217
G V VD +KMSKS GN + + + AE +R ++ S Y L+ S E L +
Sbjct: 258 GMVMVD--REKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
Query: 2218 YRRIRNTLRFL 2228
R+ LR
Sbjct: 316 LERLYTALRGT 326
|
| >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 93 TAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTP 146
HAE+ A+ A++ ++ + +YVTL PC CA AI + +++Y
Sbjct: 102 EIHAELNAILFAAENGSS---IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCET 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2492 | |||
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 4e8b_A | 251 | Ribosomal RNA small subunit methyltransferase E; 1 | 100.0 | |
| 1vhy_A | 257 | Hypothetical protein HI0303; PSI, protein structur | 100.0 | |
| 1vhk_A | 268 | Hypothetical protein YQEU; structural genomics, un | 100.0 | |
| 1v6z_A | 228 | Hypothetical protein TTHA0657; structural genomics | 100.0 | |
| 2egv_A | 229 | UPF0088 protein AQ_165; RSME, methyltransferase, r | 100.0 | |
| 3kw2_A | 257 | Probable R-RNA methyltransferase; structural genom | 100.0 | |
| 1z85_A | 234 | Hypothetical protein TM1380; alpha/beta knot fold, | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 1wny_A | 186 | Isoleucyl-tRNA synthetase; ligase, structural geno | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 4e8b_A | 251 | Ribosomal RNA small subunit methyltransferase E; 1 | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 1vhy_A | 257 | Hypothetical protein HI0303; PSI, protein structur | 100.0 | |
| 1vhk_A | 268 | Hypothetical protein YQEU; structural genomics, un | 100.0 | |
| 1wny_A | 186 | Isoleucyl-tRNA synthetase; ligase, structural geno | 100.0 | |
| 2egv_A | 229 | UPF0088 protein AQ_165; RSME, methyltransferase, r | 100.0 | |
| 1v6z_A | 228 | Hypothetical protein TTHA0657; structural genomics | 100.0 | |
| 3kw2_A | 257 | Probable R-RNA methyltransferase; structural genom | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.98 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.97 | |
| 1z85_A | 234 | Hypothetical protein TM1380; alpha/beta knot fold, | 99.97 | |
| 1wka_A | 147 | Valyl-tRNA synthetase; editing, CP1, fidelity, the | 99.97 | |
| 3o0a_A | 219 | Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt | 99.97 | |
| 2nx8_A | 179 | TRNA-specific adenosine deaminase; TAD, hydrolase; | 99.97 | |
| 1z3a_A | 168 | TRNA-specific adenosine deaminase; tRNA adenosine | 99.97 | |
| 2wfg_A | 261 | Cytosolic leucyl-tRNA synthetase; ligase, editing | 99.97 | |
| 1wka_A | 147 | Valyl-tRNA synthetase; editing, CP1, fidelity, the | 99.97 | |
| 3o0a_A | 219 | Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt | 99.96 | |
| 3pz6_A | 311 | Leurs, leucyl-tRNA synthetase; editing domain, gll | 99.96 | |
| 2wfg_A | 261 | Cytosolic leucyl-tRNA synthetase; ligase, editing | 99.96 | |
| 2b3j_A | 159 | TRNA adenosine deaminase; mixed alpha-beta, protei | 99.96 | |
| 2ajg_A | 196 | Leucyl-tRNA synthetase; editing domain, ligase; 2. | 99.96 | |
| 3dh1_A | 189 | TRNA-specific adenosine deaminase 2; zinc-binding | 99.96 | |
| 1wwr_A | 171 | TRNA adenosine deaminase TADA; homodimer, riken st | 99.96 | |
| 2ajg_A | 196 | Leucyl-tRNA synthetase; editing domain, ligase; 2. | 99.96 | |
| 3pz6_A | 311 | Leurs, leucyl-tRNA synthetase; editing domain, gll | 99.96 | |
| 2a8n_A | 144 | Cytidine and deoxycytidylate deaminase; RNA editin | 99.96 | |
| 2wfd_A | 252 | Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN | 99.96 | |
| 2wfd_A | 252 | Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN | 99.95 | |
| 1wkq_A | 164 | Guanine deaminase; domain SWAP, the cytidine deami | 99.95 | |
| 2g84_A | 197 | Cytidine and deoxycytidylate deaminase zinc-bindi; | 99.94 | |
| 1p6o_A | 161 | Cytosine deaminase; hydrolase, dimer, inhibitor bo | 99.93 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.91 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.91 | |
| 2b3z_A | 373 | Riboflavin biosynthesis protein RIBD; alpha/beta/a | 99.9 | |
| 2g6v_A | 402 | Riboflavin biosynthesis protein RIBD; RIBD APO str | 99.9 | |
| 2hxv_A | 360 | Diaminohydroxyphosphoribosylaminopyrimidine deami | 99.9 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.89 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.88 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.87 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.85 | |
| 2hvw_A | 184 | Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa | 99.85 | |
| 1vq2_A | 193 | DCMP deaminase, deoxycytidylate deaminase; hydrola | 99.84 | |
| 2w4l_A | 178 | DCMP deaminse, deoxycytidylate deaminase; pyrimidi | 99.82 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.79 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.77 | |
| 3g8q_A | 278 | Predicted RNA-binding protein, contains thump doma | 99.77 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.66 | |
| 2nyt_A | 190 | Probable C->U-editing enzyme apobec-2; cytidine de | 99.61 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.58 | |
| 1z3a_A | 168 | TRNA-specific adenosine deaminase; tRNA adenosine | 99.4 | |
| 2nx8_A | 179 | TRNA-specific adenosine deaminase; TAD, hydrolase; | 99.4 | |
| 3dh1_A | 189 | TRNA-specific adenosine deaminase 2; zinc-binding | 99.39 | |
| 2b3j_A | 159 | TRNA adenosine deaminase; mixed alpha-beta, protei | 99.38 | |
| 1wwr_A | 171 | TRNA adenosine deaminase TADA; homodimer, riken st | 99.3 | |
| 2a8n_A | 144 | Cytidine and deoxycytidylate deaminase; RNA editin | 99.19 | |
| 2g84_A | 197 | Cytidine and deoxycytidylate deaminase zinc-bindi; | 99.12 | |
| 1wkq_A | 164 | Guanine deaminase; domain SWAP, the cytidine deami | 99.08 | |
| 1uwz_A | 136 | Cytidine deaminase; CDD, tetramer, zinc binding, p | 99.01 | |
| 2fr5_A | 146 | Cytidine deaminase; tetrahydrouridine, protein-inh | 98.9 | |
| 1p6o_A | 161 | Cytosine deaminase; hydrolase, dimer, inhibitor bo | 98.77 | |
| 2z3g_A | 130 | Blasticidin-S deaminase; hydrolase, cytidine deami | 98.72 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 98.55 | |
| 2b3z_A | 373 | Riboflavin biosynthesis protein RIBD; alpha/beta/a | 98.46 | |
| 2hxv_A | 360 | Diaminohydroxyphosphoribosylaminopyrimidine deami | 98.34 | |
| 2g6v_A | 402 | Riboflavin biosynthesis protein RIBD; RIBD APO str | 98.26 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 98.25 | |
| 3b8f_A | 142 | Putative blasticidin S deaminase; cytidine deamina | 98.04 | |
| 1r5t_A | 142 | Cytidine deaminase; zinc dependent deaminase, RNA | 97.94 | |
| 3r2n_A | 138 | Cytidine deaminase; structural genomics, seattle s | 97.93 | |
| 2d30_A | 141 | Cytidine deaminase; purines, pyrimidines, nucleosi | 97.69 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 97.49 | |
| 3g8q_A | 278 | Predicted RNA-binding protein, contains thump doma | 97.45 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 97.34 | |
| 1vq2_A | 193 | DCMP deaminase, deoxycytidylate deaminase; hydrola | 97.28 | |
| 2w4l_A | 178 | DCMP deaminse, deoxycytidylate deaminase; pyrimidi | 97.22 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 97.22 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 97.22 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 97.2 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 97.16 | |
| 1ctt_A | 294 | Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es | 97.13 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 97.13 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 97.01 | |
| 3mpz_A | 150 | Cytidine deaminase; ssgcid, structu genomics, seat | 97.01 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 96.98 | |
| 2nyt_A | 190 | Probable C->U-editing enzyme apobec-2; cytidine de | 96.92 | |
| 2hvw_A | 184 | Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa | 96.89 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 96.86 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 96.76 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 96.73 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 96.73 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 96.67 | |
| 1ctt_A | 294 | Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es | 96.67 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 96.64 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 96.6 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 96.57 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 96.56 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 96.33 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 96.18 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 96.15 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 96.05 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 96.03 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 96.0 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 95.94 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 95.72 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 95.59 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 95.46 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 95.39 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 95.3 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 95.26 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 95.24 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 95.22 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 95.13 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 95.12 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 95.11 | |
| 3oj6_A | 158 | Blasticidin-S deaminase; ssgcid, seattle structura | 95.1 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 95.1 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 95.07 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 95.04 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 95.01 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 94.83 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 94.72 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 94.7 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 94.68 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 94.67 | |
| 3dmo_A | 138 | Cytidine deaminase; structural genomics, seattle s | 94.62 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 94.61 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 94.49 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 94.48 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 94.14 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 94.14 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 94.1 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 93.77 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 93.49 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 93.41 | |
| 2qmm_A | 197 | UPF0217 protein AF_1056; alpha/beta knot, SAM, str | 92.6 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 92.54 | |
| 2qmm_A | 197 | UPF0217 protein AF_1056; alpha/beta knot, SAM, str | 92.47 | |
| 4eg2_A | 298 | Cytidine deaminase; UMP synthesis, Zn binding, hyd | 92.37 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 92.34 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 92.34 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 92.19 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 92.15 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 92.0 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 91.68 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 91.65 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 91.63 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 91.49 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 90.42 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 90.38 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 90.33 | |
| 3v4k_A | 203 | DNA DC->DU-editing enzyme apobec-3G; antiviral def | 90.14 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 90.11 | |
| 4eg2_A | 298 | Cytidine deaminase; UMP synthesis, Zn binding, hyd | 89.62 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 89.58 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 89.53 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 89.46 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 89.3 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 88.56 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 88.24 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 88.22 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 88.11 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 87.89 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 87.86 | |
| 3aia_A | 211 | UPF0217 protein MJ1640; DUF358, rRNA methyltransfe | 87.83 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 87.75 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 87.75 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 87.58 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 87.58 | |
| 3aia_A | 211 | UPF0217 protein MJ1640; DUF358, rRNA methyltransfe | 87.53 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 86.55 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 86.47 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 86.37 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 86.31 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 86.25 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 85.42 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 85.41 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 84.89 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 84.79 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 84.75 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 84.64 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 84.57 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 84.53 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 84.42 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 83.72 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 83.69 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 83.29 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 83.06 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 82.96 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 82.29 |
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-175 Score=1806.83 Aligned_cols=859 Identities=39% Similarity=0.713 Sum_probs=790.9
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|+... .++++++|+||+|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|+|. |.
T Consensus 35 ~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-G~~~~ 113 (917)
T 1ffy_A 35 DQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-GVDRK 113 (917)
T ss_dssp THHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-TCCST
T ss_pred CCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc-CCCch
Confidence 4555544 356789999999999999999999999999999999999999999999999999999999999998 53
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccc
Q psy15223 514 NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSAL 593 (2492)
Q Consensus 514 ~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taL 593 (2492)
++++++|+++|++|+.++++.|++||+|||+++||+++|+||||.|+++++|+|.+|+++|+|||+.+||+|||.|+|+|
T Consensus 114 ~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~L 193 (917)
T 1ffy_A 114 KMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSL 193 (917)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCcee
Q psy15223 594 AEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLL 673 (2492)
Q Consensus 594 ae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~ 673 (2492)
||+||+|+|+.++++||+|++.+..+. + ..+.+++||||||||||||+||||||+++|++++.++ +.+
T Consensus 194 ae~eVey~d~~~~~~~v~f~~~~~~g~-----~----~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~---~~~ 261 (917)
T 1ffy_A 194 AEAEIEYHDKRSASIYVAFNVKDDKGV-----V----DADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG---EKY 261 (917)
T ss_dssp CGGGEEEEEEEEEEEECCBCCCSSTTG-----G----GTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTT---TCC
T ss_pred chhhhhcccccCceEEEEEEecccccc-----c----CCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCC---cee
Confidence 999999999999999999999763211 0 1257899999999999999999999999999998765 789
Q ss_pred eeeHHhHHHHHHHcCCcCcE---EEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHH
Q psy15223 674 ILAFNLVKSCLKKFGFKGNI---IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDF 750 (2492)
Q Consensus 674 i~a~~~~~~~~~~~~~~~~~---~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~ 750 (2492)
++|++++++++++.+.+.+. +.+++|++|.|++|.|||+ ++++||++++||++++|||+||+|||||++||
T Consensus 262 i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~ 335 (917)
T 1ffy_A 262 IIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL------DRESLVINGDHVTTDAGTGCVHTAPGHGEDDY 335 (917)
T ss_dssp CCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT------CCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHH
T ss_pred ehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCC------CCeeeEEeccccccCCCCceeEeCCCCCHHHH
Confidence 99999999999998876553 4889999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccc
Q psy15223 751 LIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQW 830 (2492)
Q Consensus 751 ~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QW 830 (2492)
++|++||| ++++|||++|+|++++|.|+|+++++|++.|++.|++.|.|++.++++|+||||||||+|||+|+|+||
T Consensus 336 ~~~~~~~L---~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QW 412 (917)
T 1ffy_A 336 IVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQW 412 (917)
T ss_dssp HTTTSSSC---CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEE
T ss_pred HHHHHcCC---CeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccce
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHH
Q psy15223 831 FINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIEL 910 (2492)
Q Consensus 831 Fi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~ 910 (2492)
|+++++ +|+++++++++++|+|+++++|+.+||++++||||||||+||+|||+|||++ |+++ .+.+++.+
T Consensus 413 Fi~~~~--------lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~-~~~~~~~~ 482 (917)
T 1ffy_A 413 FASISK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEII-MTKETVNH 482 (917)
T ss_dssp EECHHH--------HHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEE-CCHHHHHH
T ss_pred EeeHHH--------HHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEe-cCHHHHHH
Confidence 999998 9999999999999999999999999999999999999999999999999988 7655 57779999
Q ss_pred HHHHHhhcCCccccccCchhhcCC-------CccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccch
Q psy15223 911 IAKKIELNGIEIWQNLDIKEFLGD-------DAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHR 983 (2492)
Q Consensus 911 ~~~~~~~~g~~~w~~~~~~~~~~~-------~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~r 983 (2492)
+++.++..|.++|++....++++. ++..+.+++||||||||||++|+++++.++ +..||+|+|++|+||+|
T Consensus 483 i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~--~~~~P~Dl~~~G~D~~r 560 (917)
T 1ffy_A 483 VADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRP--ELSFPADMYLEGSDQYR 560 (917)
T ss_dssp HHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTST--TCCSSBSEEEEEGGGGT
T ss_pred HHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCch--hcCCCceEEEEEecccc
Confidence 999999999999998887777752 124799999999999999999999887654 34599999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHH
Q psy15223 984 GWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNR 1063 (2492)
Q Consensus 984 gwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~ 1063 (2492)
|||+++++++.++.+..||++|++||||+|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++||++.+++
T Consensus 561 ~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 561 GWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQ 640 (917)
T ss_dssp THHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHH
T ss_pred cHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1064 VVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1064 ~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
+.+++++|+|++||+++|+.+|++..+.++...+...|+|++++++++++++.++|++|+|++|++.|++|++++||++|
T Consensus 641 ~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Y 720 (917)
T 1ffy_A 641 TSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876432223344567899999999999999999999999999999999999988999999
Q ss_pred HHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchH
Q psy15223 1144 LDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKK 1223 (2492)
Q Consensus 1144 l~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~ 1223 (2492)
++++|+|+|+...++..|++++++|+.++..+++||+|||||+|||||+.|+.. ..+|||++.||+.++ .+..
T Consensus 721 l~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~-----~~~sv~~~~wP~~~~--~~~~ 793 (917)
T 1ffy_A 721 LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-----KEESVHLADMPKVVE--VDQA 793 (917)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-----SSSSGGGSCCCCCCC--CCHH
T ss_pred HHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC-----CCCCeEecCCCCCCc--chHH
Confidence 999999999987777788999999999999999999999999999999999752 236999999998765 3567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCch--hHHHHHHhHHHHHHhhhccceEEeecCCCC----c
Q psy15223 1224 LLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL--DFEILNEFGEELKFFLLTSSVSLFQIKNLS----E 1297 (2492)
Q Consensus 1224 ~~~~~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~--~~~~l~~~~~~L~~l~~vs~v~i~~~~~~~----~ 1297 (2492)
+++.|+.++++|++|+++++.+|+++.|+.++++.|+|..+++ ..+.|+.+ ++|+++++||+|++......+ +
T Consensus 794 l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~~s~~~~~~~~~~~~~~~~ 872 (917)
T 1ffy_A 794 LLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-DALHQLFIVSQVKVVDKLDDQATAYE 872 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTTSSEEEECSCCCTTSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHHhcccceEEecCCcccccccc
Confidence 7889999999999999999999999999999999999987655 66777777 789999999999996422111 2
Q ss_pred eE-EEEEecCCCCCccccccccccCCCCCCCCcchhhhhhcc
Q psy15223 1298 EC-IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLF 1338 (2492)
Q Consensus 1298 ~~-v~v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~ 1338 (2492)
+. |.|.++.++||||||+|.++||.++++|.||.||+.++.
T Consensus 873 ~~~~~~~~~~~~kc~rcw~~~~~~~~~~~~~~~c~rc~~~~~ 914 (917)
T 1ffy_A 873 HGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 914 (917)
T ss_dssp TEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHH
T ss_pred cceEEEEeCCCCCCcccCCCccccccCCCCCCcCHhHHHHHH
Confidence 56 999999999999999999999999999999999999885
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-175 Score=1801.25 Aligned_cols=881 Identities=39% Similarity=0.717 Sum_probs=810.2
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.+.++++|+||+|||||||.|||||++|+|++||++||+||+||+|+|+|||
T Consensus 15 pm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~Gw 94 (917)
T 1ffy_A 15 PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94 (917)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEE
T ss_pred CCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccC
Confidence 47899999999999999999999987655678899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1647 DCHGMPIEIQIEKLYGK---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~---~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
||||||||.+|+|. |. ++++++|+++|++|+.++++.|++||+|||+++||+++|+||||.|+++++|+|.+|+++
T Consensus 95 D~hGlpiE~~a~k~-G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~k 173 (917)
T 1ffy_A 95 DTHGLPIEQALTKK-GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADK 173 (917)
T ss_dssp BCCSHHHHHHHHHH-TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHc-CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHc
Confidence 99999999999998 53 578999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~ 1803 (2492)
|+|||+.+||+|||.|+|+|||+||+|++..++++||+|++.+.... + ..+.+++||||||||||||+|||
T Consensus 174 GliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~---~------~~~~~~~i~TTrP~Tl~~~~av~ 244 (917)
T 1ffy_A 174 GLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGV---V------DADAKFIIWTTTPWTIPSNVAIT 244 (917)
T ss_dssp TCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTG---G------GTTCCBCCEESCGGGSSCCBCCC
T ss_pred CCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccc---c------CCCCeEEEEeCCcchhhhceEEE
Confidence 99999999999999999999999999999999999999998763210 0 12578999999999999999999
Q ss_pred EcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCce--E-EEEecccccccEEeCCCCccccCCCceecEEecCcc
Q psy15223 1804 VHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI--I-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 1880 (2492)
Q Consensus 1804 v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~--v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V 1880 (2492)
|||+++|++++.++ +.+|+|++++++++++.+.+.+. + .+++|.+|.|++|.|||+ ++.+||++++||
T Consensus 245 v~p~~~Y~~v~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~------~~~~pvi~~~~V 315 (917)
T 1ffy_A 245 VHPELKYGQYNVNG---EKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL------DRESLVINGDHV 315 (917)
T ss_dssp CCTTCCCCCCCTTT---TCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT------CCSBCCCCCCSS
T ss_pred ECCCCceEEEEeCC---ceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCC------CCeeeEEecccc
Confidence 99999999998754 67999999999999888766554 4 889999999999999998 899999999999
Q ss_pred ccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecc
Q psy15223 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 1960 (2492)
Q Consensus 1881 ~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 1960 (2492)
++++|||+||+|||||++||+++++||| +++++||++|+|++++|.|+|+++++|++.|++.|+++|.|++.++++|
T Consensus 316 ~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~h 392 (917)
T 1ffy_A 316 TTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITH 392 (917)
T ss_dssp CCSSSCSCCCBCTTSCSHHHHTTTSSSC---CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEE
T ss_pred ccCCCCceeEeCCCCCHHHHHHHHHcCC---CeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccc
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceee
Q psy15223 1961 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIA 2040 (2492)
Q Consensus 1961 ~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP 2040 (2492)
+||||||||+||++|+++|||+++++ ||+++++++++++|+|+++++++.+||++++||||||||+||+|||
T Consensus 393 s~p~c~R~~~pv~~r~t~QWFi~~~~--------lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP 464 (917)
T 1ffy_A 393 SYPHDWRTKKPVIFRATPQWFASISK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLP 464 (917)
T ss_dssp EEEEETTTCCBCEEEEEEEEEECHHH--------HHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCC
T ss_pred cCCEecCCCCEEEEEeccceEeeHHH--------HHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccc
Confidence 99999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCC-------ccCceecccccccccccCcchhhhccCC
Q psy15223 2041 FFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDD-------AVNYKKSNDTLDVWFDSGITHQTVIRGS 2113 (2492)
Q Consensus 2041 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~-------~~~~~~~~dvlDvWfdSg~~~~~~~~~~ 2113 (2492)
+|+|++ +... .+++++.++++.++..|.+.|++....++++.. ...+.+++||||||||||++|+++++.+
T Consensus 465 ~~~~~~-g~~~-~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~ 542 (917)
T 1ffy_A 465 VFYAEN-GEII-MTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR 542 (917)
T ss_dssp CEECTT-SCEE-CCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS
T ss_pred eeeCCC-CCEe-cCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCc
Confidence 999988 5543 466789999999999999999988777777521 2479999999999999999999988665
Q ss_pred ccccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2114 HKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2114 ~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
+ ++.||+|+|++|+||+||||+++++++.++.+..||+++++||||+|.+|+|||||+||+|+|.+++++||+|++||
T Consensus 543 ~--~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~ 620 (917)
T 1ffy_A 543 P--ELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARL 620 (917)
T ss_dssp T--TCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHH
T ss_pred h--hcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHH
Confidence 4 45699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2194 WVASTDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE 2273 (2492)
Q Consensus 2194 ~l~s~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 2273 (2492)
|++++++++|++|+++.++++.+.+++|+|+++|+++++.+|++....++...+..+|+|+++++++++++++++|++|+
T Consensus 621 ~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~ 700 (917)
T 1ffy_A 621 WVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFD 700 (917)
T ss_dssp HHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999887764212223345678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccC
Q psy15223 2274 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES 2353 (2492)
Q Consensus 2274 f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~ 2353 (2492)
|++|++.+++|++++|+++|++++|+|+|+...++.+|++++++|++++..+++||+|||||+|||||+.|++. .
T Consensus 701 f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~-----~ 775 (917)
T 1ffy_A 701 YLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-----K 775 (917)
T ss_dssp HHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC-----C
Confidence 99999999999988999999999999999876666778899999999999999999999999999999999752 2
Q ss_pred CCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChh--hHHHHHHhHHHHHHh
Q psy15223 2354 GETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL--DFEILNEFGEELKFF 2431 (2492)
Q Consensus 2354 ~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~--~~~~l~~~~~~L~~l 2431 (2492)
.+||+++.||+.++ .++.+++.|+.++.+|..|+++++.+|+++.|+.++++.|+|+++++ ..+.|+.+ ++|+++
T Consensus 776 ~~sv~~~~wP~~~~--~~~~l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~ 852 (917)
T 1ffy_A 776 EESVHLADMPKVVE--VDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-DALHQL 852 (917)
T ss_dssp SSSGGGSCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHH
T ss_pred CCCeEecCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHH
Confidence 46999999999775 46778889999999999999999999999999999999999987655 66777776 789999
Q ss_pred hhcccEEEeecCCC----CceE-EEEEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhc
Q psy15223 2432 LLTSSVSLFQIKNL----SEEC-IIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFA 2489 (2492)
Q Consensus 2432 ~~vs~v~i~~~~~~----~~~~-v~v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~ 2489 (2492)
++||+|++...... .++. |.|.++.+.||||||+|+++||.++++++||+||.+||.+
T Consensus 853 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~kc~rcw~~~~~~~~~~~~~~~c~rc~~~~~~ 915 (917)
T 1ffy_A 853 FIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKS 915 (917)
T ss_dssp TTSSEEEECSCCCTTSEEETTEEEEEEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHT
T ss_pred hcccceEEecCCcccccccccceEEEEeCCCCCCcccCCCccccccCCCCCCcCHhHHHHHHh
Confidence 99999999753211 1356 9999999999999999999999888889999999999974
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-148 Score=1519.52 Aligned_cols=751 Identities=22% Similarity=0.385 Sum_probs=682.3
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
+++++++|++||++|++ ++|++.. +.++++|+|++|||||||.|||||++|+|++||++||+||+||+|+|+|||||
T Consensus 6 ~y~~~~~E~~~~~~W~~-~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 6 AYDPKSVEPKWAEKWAK-NPFVANP--KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp SCCGGGTHHHHHHHHHH-SCCCCCT--TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred CCChHHHHHHHHHHHHh-CCCccCc--CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 47899999999999999 9998753 45788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHh
Q psy15223 1649 HGMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFK 1722 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~ 1722 (2492)
||||||.+++|.++. ++++++|++.|++|+.++++.|++||++||+|+||+|+|+||||.|+++++|+|.+|++
T Consensus 83 ~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 162 (862)
T 1gax_A 83 AGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYH 162 (862)
T ss_dssp CTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999987642 57788999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEE
Q psy15223 1723 KGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQAL 1802 (2492)
Q Consensus 1723 kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai 1802 (2492)
+|||||+.++|+|||.|+|+|||+||+|++..++++||+|++.+. .+++|||||||||+||+||
T Consensus 163 kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~----------------~~l~v~TTrPeTl~g~~av 226 (862)
T 1gax_A 163 EGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG----------------GFIEIATVRPETVFADQAI 226 (862)
T ss_dssp TSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS----------------CCCEEEESCSGGGTTCCCE
T ss_pred CCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC----------------CEEEEEeCCccccccceEE
Confidence 999999999999999999999999999999999999999998531 4899999999999999999
Q ss_pred EEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcccc
Q psy15223 1803 HVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITV 1882 (2492)
Q Consensus 1803 ~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~ 1882 (2492)
||||+++ +| ++|+|++|.||++ ++.+||++++||++
T Consensus 227 av~P~~~--------------------------ry------------~~l~G~~~~~P~~------~~~ipii~~~~V~~ 262 (862)
T 1gax_A 227 AVHPEDE--------------------------RY------------RHLLGKRARIPLT------EVWIPILADPAVEK 262 (862)
T ss_dssp EECSSCC--------------------------TT------------CSCTTCCCBCTTC------CCBCCEEECTTCCT
T ss_pred EECCCcc--------------------------HH------------HHHcCCEEECCCC------CCeeeEEecccccc
Confidence 9999952 12 2799999999998 89999999999999
Q ss_pred CCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCC--CCCCCccHHhhhHHHHHHHHhcCCcceeeeecc
Q psy15223 1883 DSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 1960 (2492)
Q Consensus 1883 ~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 1960 (2492)
++|||+||++||||++||+++++||| ++++++|++|+|++++ +.|.||++++|++.|++.|++.|++++.++++|
T Consensus 263 ~~GTG~V~~~Pahd~~D~~~~~~~~L---~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h 339 (862)
T 1gax_A 263 DFGTGALKVTPAHDPLDYEIGERHGL---KPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTI 339 (862)
T ss_dssp TSSSSEEECCGGGCHHHHHHHHHTTC---CCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCcceEecCCCCchHHHHHHHcCC---CccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccc
Confidence 99999999999999999999999999 9999999999999999 999999999999999999999999999999999
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCce
Q psy15223 1961 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVP 2038 (2492)
Q Consensus 1961 ~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~p 2038 (2492)
+||||||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||+|
T Consensus 340 ~~p~c~R~~~~i~~~~~~qWFv~~~~--------~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~p 411 (862)
T 1gax_A 340 ALATCSRCGTPIEYAIFPQWWLRMRP--------LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQ 411 (862)
T ss_dssp CCEEETTTCSBCCEEECCEEEECHHH--------HHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCC
T ss_pred cCCeecCCCCeEEEEecceEEEEhHH--------HHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcc
Confidence 99999999999999999999999988 9999999995 7999999999999999999999999999999999
Q ss_pred eeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCC-CccCceecccccccccccCcchhhhccCCc---
Q psy15223 2039 IAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGD-DAVNYKKSNDTLDVWFDSGITHQTVIRGSH--- 2114 (2492)
Q Consensus 2039 IP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~-~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--- 2114 (2492)
||+|+|++|+.+.+...+. +. ... . .++. +...+.+++||||||||||++|++.+....
T Consensus 412 IP~w~~~~~~~i~v~~~~~-------l~--------~~~-~-~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~ 474 (862)
T 1gax_A 412 IPAWYCEDCQAVNVPRPER-------YL--------EDP-T-SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 474 (862)
T ss_dssp CCCEEETTTCCEECCCGGG-------TT--------CCC-C-SCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCH
T ss_pred cCceecCCCCEEEEecccc-------cc--------ccc-h-hhhhcCchheecCCcccceeeccCCcchhhccCCCchH
Confidence 9999999988764332111 00 000 0 1111 223689999999999999999999886543
Q ss_pred cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHH
Q psy15223 2115 KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2115 ~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~ 2194 (2492)
+++++||+|+|++|+||+|+||.++++.+..+.|..||+++++||+|+|.+|+|||||+||+|+|.++|++||+|++|||
T Consensus 475 ~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ 554 (862)
T 1gax_A 475 DLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFA 554 (862)
T ss_dssp HHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHH
T ss_pred HHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHH
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 2195 VAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYE 2273 (2492)
Q Consensus 2195 l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 2273 (2492)
+++ +++++|++|+++.++.+.++++++||++||+.+++.++.+. ...+...|+|++++++++++.++++|++|+
T Consensus 555 ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~-----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 629 (862)
T 1gax_A 555 LIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK-----EDTPTLADRFMRSRLSRGVEEITALYEALD 629 (862)
T ss_dssp HHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC-----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 997 58999999999999999999999999999999887765421 123678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccC
Q psy15223 2274 FHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIES 2353 (2492)
Q Consensus 2274 f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~ 2353 (2492)
|++|++.+++|+++++||||++.+|+++|++ +++++.+++++++.+++||+|||||+|||||+.|+.
T Consensus 630 f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~------- 696 (862)
T 1gax_A 630 LAQAAREVYELVWSEFCDWYLEAAKPALKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG------- 696 (862)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcchhhhcc------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC-------
Confidence 9999999999999999999999999999863 567889999999999999999999999999999974
Q ss_pred CCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhh
Q psy15223 2354 GETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLL 2433 (2492)
Q Consensus 2354 ~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~ 2433 (2492)
.+||+.+.||+.+ ..+..+++.|+.++ .+++.+|++|++++|+.+.+..++|. + .. +.++.+.+.|+.+++
T Consensus 697 ~~sv~~~~wP~~~--~~d~~~~~~~~~~~----~v~~~~r~~r~~~~i~~~~~~~~~v~-~-~~-~~~~~~~~~i~~~~~ 767 (862)
T 1gax_A 697 KEELALEAWPEPG--GRDEEAERAFEALK----QAVTAVRALKAEAGLPPAQEVRVYLE-G-ET-APVEENLEVFRFLSR 767 (862)
T ss_dssp CSCGGGSCCCCCC--CCCHHHHHHHHHHH----HHHHHHHHHHHHHTCCTTCCEEEEEE-E-SC-HHHHHTHHHHHHHHC
T ss_pred CCeEEecCCCCCC--cCCHHHHHHHHHHH----HHHHHHHHhhhhhcCCCCCeeEEEEe-C-hH-HHHHHHHHHHHHHhC
Confidence 2699999999977 25677777777665 47889999999999999988887765 3 33 667888889999999
Q ss_pred cccE
Q psy15223 2434 TSSV 2437 (2492)
Q Consensus 2434 vs~v 2437 (2492)
+++|
T Consensus 768 ~~~~ 771 (862)
T 1gax_A 768 ADLL 771 (862)
T ss_dssp EEEC
T ss_pred cccc
Confidence 9887
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-146 Score=1500.82 Aligned_cols=727 Identities=22% Similarity=0.384 Sum_probs=661.0
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPIE 519 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~e 519 (2492)
+.++++|+|++|||||||.||||||+|+|++||++||+||+||+|+|+|||||||||||.+|++.++. ++++++
T Consensus 30 ~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~ 109 (862)
T 1gax_A 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109 (862)
T ss_dssp TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTH
T ss_pred CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999987642 577889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccc
Q psy15223 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIE 599 (2492)
Q Consensus 520 ~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Eve 599 (2492)
|+++|++|+.++++.|++||++||+++||+|+|+||||.|+++++|+|.+|+++|||||+.++|+|||.|+|+|||+||+
T Consensus 110 f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~ 189 (862)
T 1gax_A 110 FLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHh
Q psy15223 600 YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNL 679 (2492)
Q Consensus 600 y~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~ 679 (2492)
|+++.++++||+|++.+. .+++||||||||||||+||||||+++
T Consensus 190 ~~e~~g~~~~v~f~~~~~----------------~~l~v~TTrPeTl~g~~avav~P~~~-------------------- 233 (862)
T 1gax_A 190 TEPTPGKLYTLRYEVEGG----------------GFIEIATVRPETVFADQAIAVHPEDE-------------------- 233 (862)
T ss_dssp ECCEEEEEEEEECCCSSS----------------CCCEEEESCSGGGTTCCCEEECSSCC--------------------
T ss_pred cccccceEEEEEEEecCC----------------CEEEEEeCCccccccceEEEECCCcc--------------------
Confidence 999999999999998541 48999999999999999999999953
Q ss_pred HHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCC
Q psy15223 680 VKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 759 (2492)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~ 759 (2492)
++ ++|.|++|.||+. ++.+||++++||++++|||+||+|||||++||++|++|||
T Consensus 234 ------ry------------~~l~G~~~~~P~~------~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L- 288 (862)
T 1gax_A 234 ------RY------------RHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL- 288 (862)
T ss_dssp ------TT------------CSCTTCCCBCTTC------CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTC-
T ss_pred ------HH------------HHHcCCEEECCCC------CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCC-
Confidence 12 4799999999998 8999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCcccccC--CCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCC
Q psy15223 760 DSDIINPVMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 837 (2492)
Q Consensus 760 ~~~~~~~vd~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~ 837 (2492)
++++++|++|+|++++ |.|.||++++|++.|++.|++.|.|++.+++.|+||||||||+||++++++|||+++++
T Consensus 289 --~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~- 365 (862)
T 1gax_A 289 --KPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRP- 365 (862)
T ss_dssp --CCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHH-
T ss_pred --CccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHH-
Confidence 8889999999999999 89999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHH
Q psy15223 838 PKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI 915 (2492)
Q Consensus 838 ~~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~ 915 (2492)
++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++||.+.+...+.
T Consensus 366 -------~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~-------- 430 (862)
T 1gax_A 366 -------LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPER-------- 430 (862)
T ss_dssp -------HHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGG--------
T ss_pred -------HHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEecccc--------
Confidence 9999999995 69999999999999999999999999999999999999999998765322110
Q ss_pred hhcCCccccccCchhhcC-CCccCceecCCccccccccccccchhcccCcc---ccCCcCeeeeecccccchhhHHHHHH
Q psy15223 916 ELNGIEIWQNLDIKEFLG-DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQLIFPADLYLEGSDQHRGWFHSSLL 991 (2492)
Q Consensus 916 ~~~g~~~w~~~~~~~~~~-~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~~~p~Dl~~~G~D~~rgwf~s~l~ 991 (2492)
+.... .. ++ ++...+++++||||||||||++|+++++++.+ ++++||+|+|++|+||+||||.++++
T Consensus 431 -------l~~~~-~~-~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~ 501 (862)
T 1gax_A 431 -------YLEDP-TS-CEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEV 501 (862)
T ss_dssp -------TTCCC-CS-CTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHH
T ss_pred -------ccccc-hh-hhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHH
Confidence 00000 01 11 22347999999999999999999998876532 36789999999999999999999999
Q ss_pred HHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHHHHH
Q psy15223 992 TSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRR 1070 (2492)
Q Consensus 992 ~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~k 1070 (2492)
.+..+.|..||++|++|||++|.+|+|||||+||+|+|.++|++||+|++|||+++ +++++|++|+++.+++..+++++
T Consensus 502 ~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nk 581 (862)
T 1gax_A 502 SGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581 (862)
T ss_dssp HHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 58999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhh
Q psy15223 1071 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDR 1150 (2492)
Q Consensus 1071 l~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdr 1150 (2492)
+||++||+++++.++.+. ...+...|+|++++++++++++.++|++|+|++|++.+++|+++++||+|++.+|+|
T Consensus 582 l~N~~rf~~~~~~~~~~~-----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~ 656 (862)
T 1gax_A 582 LYNAARFVLLSREGFQAK-----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPA 656 (862)
T ss_dssp HHHHHHHHHHHSSSCCCC-----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchh
Confidence 999999999988776431 134678999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHH
Q psy15223 1151 LYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMI 1230 (2492)
Q Consensus 1151 l~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~ 1230 (2492)
+|++ +++++++|+++|+.+++||+|||||+|||||+.|+. .+||+++.||+.+ ..+..+++.|+.
T Consensus 657 l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~-------~~sv~~~~wP~~~--~~d~~~~~~~~~ 721 (862)
T 1gax_A 657 LKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG-------KEELALEAWPEPG--GRDEEAERAFEA 721 (862)
T ss_dssp HHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC-------CSCGGGSCCCCCC--CCCHHHHHHHHH
T ss_pred hhcc------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC-------CCeEEecCCCCCC--cCCHHHHHHHHH
Confidence 9864 568899999999999999999999999999999974 2699999999866 246677778887
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhhccce
Q psy15223 1231 LKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLTSSV 1287 (2492)
Q Consensus 1231 ~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~vs~v 1287 (2492)
+++ +++.++.+|+++.|+.+.++.+.|. + .. +.++.+.+.|..++++++|
T Consensus 722 ~~~----v~~~~r~~r~~~~i~~~~~~~~~v~-~-~~-~~~~~~~~~i~~~~~~~~~ 771 (862)
T 1gax_A 722 LKQ----AVTAVRALKAEAGLPPAQEVRVYLE-G-ET-APVEENLEVFRFLSRADLL 771 (862)
T ss_dssp HHH----HHHHHHHHHHHHTCCTTCCEEEEEE-E-SC-HHHHHTHHHHHHHHCEEEC
T ss_pred HHH----HHHHHHHhhhhhcCCCCCeeEEEEe-C-hH-HHHHHHHHHHHHHhCcccc
Confidence 775 4667778999999999888887765 3 33 6778888889999988766
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-145 Score=1508.20 Aligned_cols=787 Identities=26% Similarity=0.474 Sum_probs=687.7
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
++++++++|++||++|+++++|++..+.+.++++|++++|||||||.|||||++|+|++|+++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 67899999999999999999999875545678999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1648 CHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
|||||||.+|+|.+|. .+++++|++.|++|+.++++.|+++|++||+|+||+++|+||||.|+++++|+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 9999999999998764 357889999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCccccccccc--ceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPA 1798 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Eve--y~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~ 1798 (2492)
+++|||||+.++|+|||.|+|+|||+||+ |++..++++||+|++.+.... ...+.+++|||||||||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~---------~~~~~~l~v~TTrP~Tl~g 236 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPG 236 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGG---------TCSSEEEEEEESCGGGGGG
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCccc---------CCCCCEEEEEcCCChhhhh
Confidence 99999999999999999999999999994 999999999999998653100 0135799999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecC
Q psy15223 1799 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGD 1878 (2492)
Q Consensus 1799 ~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~ 1878 (2492)
|+||||||+++|++++.++ +.||+|+++++++.+. ....+.+++|++|+|+++.||+... .++.+||++++
T Consensus 237 ~~av~v~p~~~y~~~~~~~---~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~p~~~~---~~~~~pi~~~~ 307 (821)
T 1ile_A 237 NVAAAVHPEYTYAAFQVGD---EALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPYPQA---LEKGYFVVLAD 307 (821)
T ss_dssp CCCEEECTTSCEEEEEETT---EEEEEETTHHHHHTCT---TSCEEEEECHHHHTTCBBCCSSCCC---CSSCSBEEECT
T ss_pred cEEEEECCCCceeEEEcCC---cEEEehHHHHHHHHhh---CcEEEEEechHHhcCCEEEcCCccc---CCCEEEEEecC
Confidence 9999999999999999753 7899999999988652 2223499999999999999999621 26889999999
Q ss_pred ccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1879 YITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1879 ~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
||++++|||+||+|||||++||++|++||| ++++++|++|+|+++ + |+|+++++|++.|++.|+++|.+++.+++
T Consensus 308 ~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l---~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~ 382 (821)
T 1ile_A 308 YVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESY 382 (821)
T ss_dssp TCCSSSSCSCEECCTTSCHHHHHHHHHTTC---CCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCccCCCCcceEecCCCCHHHHHHHHHcCC---CcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecc
Confidence 999999999999999999999999999999 899999999999988 7 99999999999999999999999999999
Q ss_pred ccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCCCCcccccccCCCc
Q psy15223 1959 EHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGV 2037 (2492)
Q Consensus 1959 ~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~~DW~ISRqr~WG~ 2037 (2492)
+|+||||||||+||++++++|||+++++ +++++++++++++|+|++. ++++.+||++++||||||||+||+
T Consensus 383 ~h~~p~c~r~~~~~~~~~~~qWF~~~~~--------~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~ 454 (821)
T 1ile_A 383 LHSYPHCWRCSTPLMYYATESWFIKNTL--------FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGT 454 (821)
T ss_dssp EEEEEBCSSSCCBCEEEECCEEEECGGG--------GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSC
T ss_pred cccCCEecCCCCEEEEEecchhhhchHH--------HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCC
Confidence 9999999999999999999999999998 9999999999999999998 469999999999999999999999
Q ss_pred eeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc---cccchh---h---hcCCCccCceecccccccccccCcchhh
Q psy15223 2038 PIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW---QNLDIK---E---FLGDDAVNYKKSNDTLDVWFDSGITHQT 2108 (2492)
Q Consensus 2038 pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w---~~~~~~---~---~~~~~~~~~~~~~dvlDvWfdSg~~~~~ 2108 (2492)
|||+|+|++|+...+. +++.++.+ .+.+.+ .+.... . -++ ++..++|++||||||||||++|++
T Consensus 455 pIP~~~~~~~~~~~vi-----~~~~~l~~-~~~~~~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~ 527 (821)
T 1ile_A 455 PLPIWVCQACGKEEAI-----GSFQELKA-RATKPLPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFA 527 (821)
T ss_dssp BCCEEEESSSSCCEEC-----CSHHHHHH-HBSSCCCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHH
T ss_pred eeeEEEecCCCcEEee-----CcHHHHHh-hccccccchhhhccccccccccCCC-CCCchhhcccccceecccccchHh
Confidence 9999999998864321 11222211 222211 011000 0 012 235799999999999999999888
Q ss_pred hccCCc----cccCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2109 VIRGSH----KKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2109 ~~~~~~----~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
.+.... .++.+||+|+|++|+||+||||+++++.+.++.+..||+++++||++++.+|+|||||+||+|+|.++++
T Consensus 528 ~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~ 607 (821)
T 1ile_A 528 SLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR 607 (821)
T ss_dssp TTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHT
T ss_pred hcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHH
Confidence 775432 2346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhc-cCCCCcccccHHHHHH-HHHHHHHHHHHHHHHH--hcCCCCCC-CcccccccccchHHHHHHHHHH
Q psy15223 2185 LFGAEILRLWVAS-TDYSKDLSISNEILNR-VVETYRRIRNTLRFLL--ANTSDFNP-NINIIKISDMVEIDKYAIINIT 2259 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~-~~~~~~kl~n~~r~~~--~~~~~~~~-~~~~~~~~~~~~~D~~il~~l~ 2259 (2492)
+||+|++|||+++ +++++|++||++.+++ +.+.+++|+|+++|+. .++.++.+ ... ....+...|+|++++++
T Consensus 608 ~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~ll~~l~ 685 (821)
T 1ile_A 608 KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP--PPEKRPEMDRWLLARMQ 685 (821)
T ss_dssp TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCC--CSTTSCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccc--ccccCCHHHHHHHHHHH
Confidence 9999999999997 4799999999999998 5889999999999864 34444443 211 12235678999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q psy15223 2260 NLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEE 2339 (2492)
Q Consensus 2260 ~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEe 2339 (2492)
++++.+.++|++|+|++|++.|++|++++++|+|++.+|+++|+... +.++++++++++++++.+++||+|||||+|||
T Consensus 686 ~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aee 764 (821)
T 1ile_A 686 DLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPFLAEV 764 (821)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccchHHHH
Confidence 99999999999999999999999999889999999999999997643 23456889999999999999999999999999
Q ss_pred HHHHcccCCccccCCC-CeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15223 2340 AWSIFSDKNFYIESGE-TIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGII 2401 (2492)
Q Consensus 2340 lw~~L~~~~~~~~~~~-sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i 2401 (2492)
||+.|+... ....+ ||+.+.||+.++.+.++++++.|+.+++ +.+.+|++|++.+|
T Consensus 765 lw~~L~~~~--~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~----~~~~~r~~r~~~~~ 821 (821)
T 1ile_A 765 LWQNLVRSV--RLEAKESVHLADWPEADPALADEALVAQMRAVLK----VVDLARAARAKSGV 821 (821)
T ss_dssp HHHHHTTTT--STTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHH----HHHHHTTCTTSCCC
T ss_pred HHHhccccc--cCCCCCceEeecCCCCCcccCCHHHHHHHHHHHH----HHHHHHHHHHHcCC
Confidence 999997530 01124 9999999998877778888888888876 44566777776653
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-143 Score=1489.58 Aligned_cols=766 Identities=26% Similarity=0.476 Sum_probs=668.7
Q ss_pred cccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc----
Q psy15223 439 VWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK---- 513 (2492)
Q Consensus 439 ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~---- 513 (2492)
+|+... .++++++|++++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||||||.+|+|.+|.
T Consensus 26 ~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~ 105 (821)
T 1ile_A 26 IFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKR 105 (821)
T ss_dssp HHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHH
T ss_pred CcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccc
Confidence 444433 346789999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCC
Q psy15223 514 ---NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCK 590 (2492)
Q Consensus 514 ---~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~ 590 (2492)
.+++++|++.|++|+.++++.|+++|++||+++||+++|+||||.|+++++|+|.+|+++|||||+.++|+|||.|+
T Consensus 106 ~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 185 (821)
T 1ile_A 106 EIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG 185 (821)
T ss_dssp HHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred hHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc--ccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCC
Q psy15223 591 SALAEAEIE--YKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKND 668 (2492)
Q Consensus 591 taLae~Eve--y~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~ 668 (2492)
|+|||+||+ |.++.++++||+|++.+.... ...+.+++||||||||||||+||||||+++|+.++.++
T Consensus 186 t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~---------~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~- 255 (821)
T 1ile_A 186 TPLSSHEVALGYKEIQDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD- 255 (821)
T ss_dssp EECCHHHHHHTEEEEEEEEEEEEEEBSSGGGG---------TCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETT-
T ss_pred CcccHhHhhcCcccccCceEEEEEEecCCccc---------CCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCC-
Confidence 999999994 999999999999999753100 12368999999999999999999999999999999855
Q ss_pred CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 669 PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 669 ~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
+.||+|+++++++.+. ...++.+++|++|+|++|.||+... .++.+||++++||++++|||+||+|||||++
T Consensus 256 --~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~p~~~~---~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~ 327 (821)
T 1ile_A 256 --EALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPYTPPYPQA---LEKGYFVVLADYVSQEDGTGIVHQAPAFGAE 327 (821)
T ss_dssp --EEEEEETTHHHHHTCT---TSCEEEEECHHHHTTCBBCCSSCCC---CSSCSBEEECTTCCSSSSCSCEECCTTSCHH
T ss_pred --cEEEehHHHHHHHHhh---CcEEEEEechHHhcCCEEEcCCccc---CCCEEEEEecCcCccCCCCcceEecCCCCHH
Confidence 8999999999998753 3345699999999999999999511 1688999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecc
Q psy15223 749 DFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTL 828 (2492)
Q Consensus 749 D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~ 828 (2492)
||++|++||| +++++||++|+|+++ | |+|+++++|++.|++.|++.|.+++.++++|+||||||||+|||+++++
T Consensus 328 D~~~~~~~~l---~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~ 402 (821)
T 1ile_A 328 DLETARVYGL---PLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATE 402 (821)
T ss_dssp HHHHHHHTTC---CCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECC
T ss_pred HHHHHHHcCC---CcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecc
Confidence 9999999999 888999999999998 7 9999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHH
Q psy15223 829 QWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 907 (2492)
Q Consensus 829 QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~ 907 (2492)
|||+++++ +++++++++++++|+|++. ++++.+||++++||||||||+||+|||+|+|++||+..+.
T Consensus 403 qWF~~~~~--------~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi---- 470 (821)
T 1ile_A 403 SWFIKNTL--------FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAI---- 470 (821)
T ss_dssp EEEECGGG--------GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEEC----
T ss_pred hhhhchHH--------HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEee----
Confidence 99999998 9999999999999999998 5699999999999999999999999999999999865421
Q ss_pred HHHHHHHHhhcCCcccc---ccCch---hh-cCC-CccCceecCCccccccccccccchhcccCc----cccCCcCeeee
Q psy15223 908 IELIAKKIELNGIEIWQ---NLDIK---EF-LGD-DAVNYKKSNDTLDVWFDSGITHQTVIRGSH----KKQLIFPADLY 975 (2492)
Q Consensus 908 i~~~~~~~~~~g~~~w~---~~~~~---~~-~~~-~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~----~~~~~~p~Dl~ 975 (2492)
+++.++.+ .|.+.+- ++... .. +++ .+..+++++||||||||||++|++.++.+. .++++||+|+|
T Consensus 471 -~~~~~l~~-~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~ 548 (821)
T 1ile_A 471 -GSFQELKA-RATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFI 548 (821)
T ss_dssp -CSHHHHHH-HBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBE
T ss_pred -CcHHHHHh-hccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccc
Confidence 22233322 2332210 11000 00 111 235799999999999999999888876542 22568999999
Q ss_pred ecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccc
Q psy15223 976 LEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDL 1054 (2492)
Q Consensus 976 ~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~ 1054 (2492)
++|+||+||||+++++.+.++.+..||++|++|||+++.+|+|||||+||+|+|.+++++||+|++|||+++ +++++|+
T Consensus 549 ~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~ 628 (821)
T 1ile_A 549 AEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADR 628 (821)
T ss_dssp EEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCE
T ss_pred cchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4699999
Q ss_pred ccCHHHHHH-HHHHHHHHHHHHHHHh--hcCCCCCC-CcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q psy15223 1055 SISNEILNR-VVETYRRIRNTLRFLL--ANTSDFNP-NINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130 (2492)
Q Consensus 1055 ~fs~~~l~~-~~~~~~kl~n~~rf~l--~~l~~~~~-~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~ 1130 (2492)
+||++.+++ ..+.+++|+|+++|++ +++.++.+ ... ....+...|+|++++++++++++.++|++|+|++|++.
T Consensus 629 ~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~ 706 (821)
T 1ile_A 629 RFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP--PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARA 706 (821)
T ss_dssp ECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCC--CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999 5889999999999864 34555544 211 12345678999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCC-ceee
Q psy15223 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGE-TIFT 1209 (2492)
Q Consensus 1131 l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~-SV~~ 1209 (2492)
|++|++++++|+|++..|+++|+... +..|++++++++++++.+++||+|||||+|||||+.|+... . ...+ ||++
T Consensus 707 l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~-~-~~~~~sv~~ 783 (821)
T 1ile_A 707 LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV-R-LEAKESVHL 783 (821)
T ss_dssp HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT-S-TTSCSSGGG
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccc-c-CCCCCceEe
Confidence 99999889999999999999998654 33466899999999999999999999999999999997530 0 1124 9999
Q ss_pred ccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy15223 1210 QLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGI 1250 (2492)
Q Consensus 1210 ~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~~k~ 1250 (2492)
+.||+.++...+.++++.|+.++++++.++ .+|++.+
T Consensus 784 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r----~~r~~~~ 820 (821)
T 1ile_A 784 ADWPEADPALADEALVAQMRAVLKVVDLAR----AARAKSG 820 (821)
T ss_dssp SCCCCCCTTTCCHHHHHHHHHHHHHHHHHT----TCTTSCC
T ss_pred ecCCCCCcccCCHHHHHHHHHHHHHHHHHH----HHHHHcC
Confidence 999998766667888888999987776654 4565543
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-131 Score=1380.22 Aligned_cols=775 Identities=17% Similarity=0.267 Sum_probs=639.0
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
..++++++|++||++|+++++|++..+.+.++++|++++|||||||.|||||++|+|++||++||+||+||+|+|+||||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD 81 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCC
Confidence 35688999999999999999999865422334899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhc------------cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccCeeccCC--hHHHH
Q psy15223 1648 CHGMPIEIQIEKLYG------------KNLSPIEIQN--KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEA 1711 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~------------~~~~~~e~~~--~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~ 1711 (2492)
|||||||.+|++... .+++++++.+ .|++|+.++++.|++||++||+|+||+|+|.||| |.|++
T Consensus 82 ~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~ 161 (967)
T 1wz2_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (967)
T ss_dssp CCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHH
T ss_pred CCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHH
Confidence 999999999886421 1567777654 5999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc--eEEEEEeccCchhhHhhhccCCCCCCccEEEEe
Q psy15223 1712 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF--SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789 (2492)
Q Consensus 1712 ~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~--~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~ 1789 (2492)
+++|+|.+|+++|||||+.++|+|||.|+|+|||+||+|.+..++ .++|+|++.+. +.+.+++||
T Consensus 162 ~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~i~ 228 (967)
T 1wz2_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAA 228 (967)
T ss_dssp HHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCS-------------SSCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCC-------------CCceEEEEE
Confidence 999999999999999999999999999999999999999766544 46789987532 124799999
Q ss_pred ecCcchhccccEEEEcCCCCEEEEEecC-CCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccC
Q psy15223 1790 TSTPWTIPANQALHVHPEFDYALVHIKN-DPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDIN 1867 (2492)
Q Consensus 1790 TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~-~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~ 1867 (2492)
||||||||||+||||||+++|++++..+ ...+.+|+++++++++..+. ....+ .+++|++|+|++|.||++
T Consensus 229 TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~--~~~~~~~~~~G~~l~G~~~~~P~~----- 301 (967)
T 1wz2_A 229 TLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQD--REIEVIEEFKGEKLIGKYVRNPVS----- 301 (967)
T ss_dssp ESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSS--CEEEEEEECCSSTTSSCEEECSSS-----
T ss_pred cCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhc--cCcEEEEEEEchhhcCCEEECCCC-----
Confidence 9999999999999999999999998753 11268999999988875432 23344 899999999999999999
Q ss_pred CCceecEEecCccccCCCCceEEcCCCCChhhHHH----------HHHcCCCC-----CCccc-----------------
Q psy15223 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI----------FKKQNMKD-----SDIIN----------------- 1915 (2492)
Q Consensus 1868 ~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~----------~~~~~l~~-----~~~~~----------------- 1915 (2492)
++++||++++||++++|||+||+|||||++||.+ +++|||+. -++++
T Consensus 302 -~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~ 380 (967)
T 1wz2_A 302 -GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVN 380 (967)
T ss_dssp -SCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTT
T ss_pred -CCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhh
Confidence 8899999999999999999999999999999985 57888852 01333
Q ss_pred ------ccCC----------------CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEE
Q psy15223 1916 ------PVMD----------------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPII 1973 (2492)
Q Consensus 1916 ------~vd~----------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi 1973 (2492)
++|+ +|+|+ +++|+|++|++|++.|++.|+++|.++..+++.| ||+|||||+|++
T Consensus 381 ~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i 457 (967)
T 1wz2_A 381 KLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAV 457 (967)
T ss_dssp TSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCE
T ss_pred hccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEE
Confidence 3343 78888 7899999999999999999999999998776655 899999999999
Q ss_pred Ee-ecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeE---EEECCCCc
Q psy15223 1974 YR-TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKSGK 2049 (2492)
Q Consensus 1974 ~~-~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~---~~~~~~~~ 2049 (2492)
++ +++|||+++++. .||+++++++++++|+|+++++++.+|+++++||||||||+||+|||+ |.++.
T Consensus 458 ~~~~~~qWFi~~~~~------~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~--- 528 (967)
T 1wz2_A 458 IKIIHDQWFIDYGNP------EWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIES--- 528 (967)
T ss_dssp ECCCSSCEEEESCCT------THHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECH---
T ss_pred EeccCCccceecCch------HHHHHHHHhhhccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCccccccc---
Confidence 99 699999999851 299999999999999999999999999999999999999999999995 22221
Q ss_pred ccCCcHHH-HHHHHHHHh----hcCcccccccchhhhcCCC-----ccCceecccccccccccCcchhhhccCCccccCC
Q psy15223 2050 LHPKTLEL-IELIAKKIE----LNGIEIWQNLDIKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI 2119 (2492)
Q Consensus 2050 ~~~~~~~~-~~~i~~~~~----~~g~~~w~~~~~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~ 2119 (2492)
....+.+. .+.++..+. ..|.+ ++++.++- ...+.+ .+++|+|++||+++..+.+.+.++++|
T Consensus 529 ~~ds~iYv~~~~~~~~~~~~~~~~g~~------~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sG~~~~~~~~~~~~~~~w 601 (967)
T 1wz2_A 529 LSDSTIYMAYYTISRHINKLRQEGKLD------PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYW 601 (967)
T ss_dssp HHHTTSTHHHHHHHHHHHHHHHTTCCC------GGGCCHHHHHHTTTSCCCH-HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCceEeehhhhhhHHHHHHHhcCCC------hHHcCcccceeeccCcccc-CccccchhhcCCCHHHHhhhHHHHHhh
Confidence 10011111 111222211 22211 11111100 000111 256677778888766555444445778
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-c
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-S 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s 2197 (2492)
||+|+|++|+||+++|+..+++.+.++++..|| +++++||||++ +|+|||||+||+|+|.+++++||+|++||||+ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~ 680 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSL 680 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhC
Confidence 999999999999999988999999999988777 99999999997 89999999999999999999999999999998 5
Q ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a 2277 (2492)
+++++|++|+++.++.+.+.++|+||+++++.++. .+. ...+...|+|+++++++++++++++|++|+|++|
T Consensus 681 ~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~~-----~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A 752 (967)
T 1wz2_A 681 AEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752 (967)
T ss_dssp CCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC---CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC---CCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 78999999999999999999999999999986531 111 1235678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCe
Q psy15223 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETI 2357 (2492)
Q Consensus 2278 ~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV 2357 (2492)
+..++.++++. +|+|++.+|++ .+++++++++++++.+++||+|||||+|||||+.|+.. +||
T Consensus 753 ~~~~~~~l~~~-~n~Yi~~~k~~---------~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~-------~sv 815 (967)
T 1wz2_A 753 VQWAFYSIMND-LRWYLRRTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-------GFV 815 (967)
T ss_dssp HHHHTHHHHHH-HHHHHHHTTTC---------CCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC-------SCG
T ss_pred HHHHHHHHHHH-HHHHHHhccch---------hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC-------Cce
Confidence 99887666554 68999988752 13478899999999999999999999999999999743 699
Q ss_pred eeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeC
Q psy15223 2358 FTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKIN 2414 (2492)
Q Consensus 2358 ~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~ 2414 (2492)
+.+.||+.++.+.+++++..|+.+++++. .++++|...+++. +..++|+++
T Consensus 816 ~~~~wP~~~~~~~d~~~~~~~~~~~~~~~----~vr~~~~~~~~~~--p~~~~i~~~ 866 (967)
T 1wz2_A 816 SLAKWPEPVEEWWNETIEAEEEFIRSVME----DIKEIIEVAKIEN--AKRAYIYTA 866 (967)
T ss_dssp GGSCCCCCCSSCCCHHHHHHHHHHHHHHH----HHHHHHHTSCCCC--SBEEEECCC
T ss_pred eccCCCCCCcccCCHHHHHHHHHHHHHHH----HHHHHHHHhCCCC--CCeEEEEEC
Confidence 99999998877778888888988877554 4556676676622 366777654
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-128 Score=1354.66 Aligned_cols=749 Identities=17% Similarity=0.254 Sum_probs=619.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC------------cCC
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------------KNL 515 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~------------~~~ 515 (2492)
++++|++++|||||||.|||||++|+|++||++||+||+||+|+|+|||||||||||..|++... .++
T Consensus 32 ~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi 111 (967)
T 1wz2_A 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKV 111 (967)
T ss_dssp GGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCC
T ss_pred CCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCC
Confidence 34899999999999999999999999999999999999999999999999999999999886421 156
Q ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHHccccccccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCc
Q psy15223 516 SPIEIQN--KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKS 591 (2492)
Q Consensus 516 ~~~e~~~--~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~t 591 (2492)
+.+++.+ .|++|+.++++.|++||+|||+++||+|+|.||| |.|+++++|+|.+|+++|||||+.+||+|||.|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T 191 (967)
T 1wz2_A 112 PEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGT 191 (967)
T ss_dssp CHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCC
Confidence 6776653 6999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccccccccccceecc--EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecC-C
Q psy15223 592 ALAEAEIEYKKKYDF--SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKN-D 668 (2492)
Q Consensus 592 aLae~Evey~~~~~~--s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~-~ 668 (2492)
+|||+||+|.+..++ .++|+|++.+. +.+.+++||||||||||||+||||||+++|++++..+ .
T Consensus 192 ~Lad~Ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~ 258 (967)
T 1wz2_A 192 PLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKD 258 (967)
T ss_dssp BCCSSSCSSCCCCCEECCEEEEEECCCS-------------SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSS
T ss_pred CcchhhhccCCCceeceeEEEEEEecCC-------------CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCC
Confidence 999999999765544 47799988542 1247999999999999999999999999999998743 1
Q ss_pred CCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHH
Q psy15223 669 PPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIE 748 (2492)
Q Consensus 669 ~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~ 748 (2492)
.++.+|+|+++++++..+. .....+.+++|++|+|++|.||+. ++++||++++||++++|||+||+|||||++
T Consensus 259 ~~~~~i~a~~~~~~~~~~~-~~~~~~~~~~G~~l~G~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~ 331 (967)
T 1wz2_A 259 KEETWIVSKEAAYKLSFQD-REIEVIEEFKGEKLIGKYVRNPVS------GDEVIILPAEFVDPDNATGVVMSVPAHAPF 331 (967)
T ss_dssp CEEEEEEEHHHHHHHHHSS-CEEEEEEECCSSTTSSCEEECSSS------SCEEEEEECSSCCSSSTTSCEEECTTSCTT
T ss_pred cceeeehHHHHHHHHHhhc-cCcEEEEEEEchhhcCCEEECCCC------CCceEEEecccccCCCCcccEEeecCCCHH
Confidence 2368999999999886542 122344899999999999999998 889999999999999999999999999999
Q ss_pred HHHH----------HHHcCCCC-----CCcccc-----------------------cCC----------------CCccc
Q psy15223 749 DFLI----------FKKQNMKD-----SDIINP-----------------------VMD----------------DGNFI 774 (2492)
Q Consensus 749 D~~~----------~~~~~l~~-----~~~~~~-----------------------vd~----------------~G~~~ 774 (2492)
||.+ |++|||+. -+++++ +|+ +|+|+
T Consensus 332 Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~ 411 (967)
T 1wz2_A 332 DHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK 411 (967)
T ss_dssp TTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC
T ss_pred HHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe
Confidence 9986 57889852 113333 343 78888
Q ss_pred ccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe-ecccceeecCCCCcchhHHHHHHHHHHh
Q psy15223 775 STLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDKIPKNEKKSLRESAITAI 853 (2492)
Q Consensus 775 ~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r-~t~QWFi~~~~~~~~~~~~~~~~~~~~i 853 (2492)
+|+|+|+++++|++.|++.|++.|.++..+++.| ||+|||||+|+|++ +++|||+++++ ..+|+++++++
T Consensus 412 --~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~------~~~k~~~l~~~ 482 (967)
T 1wz2_A 412 --VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGN------PEWKEKARKAL 482 (967)
T ss_dssp --SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCC------TTHHHHHHHHH
T ss_pred --ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCc------hHHHHHHHHhh
Confidence 7899999999999999999999999998766655 89999999999999 69999999985 12999999999
Q ss_pred hcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeE---EEECC--CCccccCcHHHHHHHHHHHh-hcCCccccccC
Q psy15223 854 NKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKK--SGKLHPKTLELIELIAKKIE-LNGIEIWQNLD 927 (2492)
Q Consensus 854 ~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~---~~~~~--~~~~~~~~~~~i~~~~~~~~-~~g~~~w~~~~ 927 (2492)
++++|+|+++++++.+|+++++||||||||+||+|||+ |.++. ..... .-...+.+..+.+. ..|. +
T Consensus 483 ~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iY-v~~~~~~~~~~~~~~~~g~------~ 555 (967)
T 1wz2_A 483 ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIY-MAYYTISRHINKLRQEGKL------D 555 (967)
T ss_dssp TTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTST-HHHHHHHHHHHHHHHTTCC------C
T ss_pred hccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceE-eehhhhhhHHHHHHHhcCC------C
Confidence 99999999999999999999999999999999999995 23321 00111 00112222222111 2232 1
Q ss_pred chhhcCCC-----ccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCc
Q psy15223 928 IKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY 1002 (2492)
Q Consensus 928 ~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~ 1002 (2492)
++++.++. ...+.+ .++.|+||+||+++..+.+.+.++++|||+|+|++|+||+++|+..+++.+.++.+..||
T Consensus 556 ~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~ 634 (967)
T 1wz2_A 556 PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHW 634 (967)
T ss_dssp GGGCCHHHHHHTTTSCCCH-HHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTS
T ss_pred hHHcCcccceeeccCcccc-CccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCcccc
Confidence 22221100 001112 256778889998776554433344688999999999999999988889999999988787
Q ss_pred -eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccCHHHHHHHHHHHHHHHHHHHHHhh
Q psy15223 1003 -KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRVVETYRRIRNTLRFLLA 1080 (2492)
Q Consensus 1003 -k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~ 1080 (2492)
+.+++|||+++ +|+|||||+||+|+|.+++++||+|++|||++ ++++++|++|+++.++.+.++++|++|+++++++
T Consensus 635 pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~ 713 (967)
T 1wz2_A 635 PKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE 713 (967)
T ss_dssp CCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 89999999999999999999999999999997 5889999999999999999999999999999876
Q ss_pred cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHH
Q psy15223 1081 NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHA 1160 (2492)
Q Consensus 1081 ~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~ 1160 (2492)
+. .+. ...+...|+|++++++++++++.++|++|+|++|+..++.|++++ +|+|++.+|++ .
T Consensus 714 ~~---~~~-----~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~-~n~Yi~~~k~~---------~ 775 (967)
T 1wz2_A 714 YE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRTEGR---------D 775 (967)
T ss_dssp SC---CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHTTTC---------C
T ss_pred CC---CCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHhccch---------h
Confidence 41 111 123567899999999999999999999999999999887666554 58999998853 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHH
Q psy15223 1161 RRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQ 1240 (2492)
Q Consensus 1161 r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~ 1240 (2492)
+++++++|+++|+.+++||+|||||+|||||+.|+.. +||+++.||+.++...+..+++.|+.++++++.+++
T Consensus 776 ~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~-------~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~ 848 (967)
T 1wz2_A 776 DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-------GFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKE 848 (967)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC-------SCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC-------CceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999743 699999999987666678888999999988887775
Q ss_pred HHHHHHhhCCCCCCcceEEEEEeCc
Q psy15223 1241 KLEKIRSTGIIGSSLQAEIILKINK 1265 (2492)
Q Consensus 1241 ~le~~R~~k~i~~s~~a~v~i~~~~ 1265 (2492)
+|....++.+ ..++|.+.+
T Consensus 849 ----~~~~~~~~~p--~~~~i~~~~ 867 (967)
T 1wz2_A 849 ----IIEVAKIENA--KRAYIYTAE 867 (967)
T ss_dssp ----HHHTSCCCCS--BEEEECCCT
T ss_pred ----HHHHhCCCCC--CeEEEEECC
Confidence 4555555222 667776543
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-120 Score=1258.58 Aligned_cols=718 Identities=18% Similarity=0.289 Sum_probs=591.6
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
+.++++++|++||++|+++++|++..+.+.++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|+||||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 46789999999999999999999865544567899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhc------------cCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccccCeeccCC--hHHHH
Q psy15223 1648 CHGMPIEIQIEKLYG------------KNLSPIEIQ--NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEA 1711 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~------------~~~~~~e~~--~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~ 1711 (2492)
|||+|||..|++... .++++.++. ..|++|+.++.+.|+++|++||+++||+++|+|+| |.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHH
Confidence 999999999876421 145555553 36899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce--EEEEEeccCchhhHhhhccCCCCCCccEEEEe
Q psy15223 1712 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS--IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789 (2492)
Q Consensus 1712 ~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~--~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~ 1789 (2492)
+++|+|.+|+++|+||++.++|+|||.|+|+|||+||+|++..+++ ++|+|++.+. +.+.+++||
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~v~ 228 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAA 228 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSS-------------CSCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCC-------------CCceEEEEE
Confidence 9999999999999999999999999999999999999998765555 4588887542 124799999
Q ss_pred ecCcchhccccEEEEcCCCCEEEEEecC-CCCceehhhHHhHHHHHHHcCCcCceE-EEEecccccccEEeCCCCccccC
Q psy15223 1790 TSTPWTIPANQALHVHPEFDYALVHIKN-DPPLLLILAFNLVKSCLKKFGFKGNII-GICKGIKLSKINFFHPLSNIDIN 1867 (2492)
Q Consensus 1790 TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~-~~~~~~i~a~~~~~~~~~~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~ 1867 (2492)
||||||||||+||||||+++|++++..+ ...+.+|+++++++++... .....+ .+++|.+|+|++|.||++
T Consensus 229 TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~G~~l~g~~~~~P~~----- 301 (810)
T 1wkb_A 229 TLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQ--DREIEVIEEFKGEKLIGKYVRNPVS----- 301 (810)
T ss_dssp ESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTS--SCEEEEEEECTTTTTTTCEEECSSS-----
T ss_pred cCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhh--hcceEEEEEEEchhhcCCEEECCCC-----
Confidence 9999999999999999999999998742 1126789998888776322 222333 899999999999999998
Q ss_pred CCceecEEecCccccCCCCceEEcCCCCChhhHHH----------HHHcCCCC-----CCccccc---------------
Q psy15223 1868 YNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI----------FKKQNMKD-----SDIINPV--------------- 1917 (2492)
Q Consensus 1868 ~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~----------~~~~~l~~-----~~~~~~v--------------- 1917 (2492)
++++||++++||++++|||+||+|||||++||++ |++|||+. -++++++
T Consensus 302 -~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~ 380 (810)
T 1wkb_A 302 -GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVN 380 (810)
T ss_dssp -CCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSG
T ss_pred -CCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhh
Confidence 8999999999999999999999999999999986 47888841 0133333
Q ss_pred --------CC----------------CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEE
Q psy15223 1918 --------MD----------------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPII 1973 (2492)
Q Consensus 1918 --------d~----------------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi 1973 (2492)
|+ +|+|+ +++|.|+.+++|++.|++.|+++|.+...+++.| +|+|||||+|++
T Consensus 381 ~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi 457 (810)
T 1wkb_A 381 KLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAV 457 (810)
T ss_dssp GGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCE
T ss_pred hccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEE
Confidence 32 68887 7889999999999999999999999998888776 799999999999
Q ss_pred Ee-ecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeE---EEECCCCc
Q psy15223 1974 YR-TTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKSGK 2049 (2492)
Q Consensus 1974 ~~-~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~---~~~~~~~~ 2049 (2492)
++ +++|||+++++ ..+++++++++++++|+|+++++++.+|+++++||||||||+||+|||+ |.++..
T Consensus 458 ~~~~~~qwF~~~~~------~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~-- 529 (810)
T 1wkb_A 458 IKIIHDQWFIDYGN------PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESL-- 529 (810)
T ss_dssp EEEEEEEEEECTTC------HHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTT--
T ss_pred EEecCCceeEecCh------HHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccC--
Confidence 99 79999999986 2399999999999999999999999999999999999999999999995 334321
Q ss_pred ccCCcHHH-HHHHHHHHh----hcCcccccccchhhhcCCC-----ccCceecccccccccccCcchhhhccCCccccCC
Q psy15223 2050 LHPKTLEL-IELIAKKIE----LNGIEIWQNLDIKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI 2119 (2492)
Q Consensus 2050 ~~~~~~~~-~~~i~~~~~----~~g~~~w~~~~~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~ 2119 (2492)
...+.+. .+.++..+. ..|.+ ++++.++- ...+.+ .+++|+||+||+++..+.+.+.++++|
T Consensus 530 -~~~~iYv~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sg~~~~~~~~~~~~~~~~ 601 (810)
T 1wkb_A 530 -SDSTIYMAYYTISRHINKLRQEGKLD------PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYW 601 (810)
T ss_dssp -TSSSSHHHHHHHHHHHHHHHHTTCCC------GGGCCHHHHHHHHHSCCCH-HHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred -CCCceeeehhhhHHHHHHhHhhcCCC------HHHcCccceeeeecccccc-CccccchhhhCCCHHHHHhhHHHHHhh
Confidence 1111111 112222221 22211 11111100 000111 256777888998765443333334678
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccc-cEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh-c
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-S 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~-s 2197 (2492)
||+|+|++|+||+++|+..+++.+.++.+..|| +++++||||++ +|+|||||+||+|+|.+++++||+|++|||++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~ 680 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSL 680 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhc
Confidence 999999999999999988889999998887777 89999999996 89999999999999999999999999999998 5
Q ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a 2277 (2492)
+++++|++|+++.++.+.+.++|++|+++++.+.. .+. ...+...|+|++++++++++.+.++|++|+|++|
T Consensus 681 ~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~~-----~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a 752 (810)
T 1wkb_A 681 AEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752 (810)
T ss_dssp CCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC---CCS-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc---Ccc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 88999999999999999999999999999886531 111 1235678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHcc
Q psy15223 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSA-QTSIWHINQSLLRLISPILSFTSEEAWSIFS 2345 (2492)
Q Consensus 2278 ~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~-~~~l~~il~~l~~lLaPi~P~~aEelw~~L~ 2345 (2492)
+..++.++++. +|+|++..|++ + + ++ +++++++++.+++||+|||||+|||||+.|+
T Consensus 753 ~~~~~~~l~~~-~n~yi~~~k~~------~---~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 753 VQWAFYSIMND-LRWYLRRTEGR------D---D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHTHHHHHH-HHHHHHHTTTC------C---C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-HHHHHHHhcCc------c---h-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 99775444444 68999988752 1 1 34 7899999999999999999999999999884
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-119 Score=1241.08 Aligned_cols=704 Identities=20% Similarity=0.288 Sum_probs=537.6
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
++++++++|++||++|+++++|++.. .+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D 80 (878)
T 2v0c_A 2 EKYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80 (878)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBC
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccC
Confidence 36899999999999999999998754 24567899999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceE
Q psy15223 1648 CHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVY 1727 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliy 1727 (2492)
|||+|||.+|++. ++++. +|+.++++.|++||++||+++||+++|.|+||.|+++++|+|.+|+++|+||
T Consensus 81 ~~Glpie~~a~k~---g~~~~-------~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY 150 (878)
T 2v0c_A 81 AFGLPAENAALKF---GVHPK-------DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150 (878)
T ss_dssp CSSHHHHHHHHHT---TCCHH-------HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccHHHHHHHHHc---CCCHH-------HHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999999999886 67764 4899999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCcccccccccceee-e-cceEEEE-------EeccCch-hhH-----------------hhhccCC--
Q psy15223 1728 HGLKPVNWCFDCKSALAEAEIEYKKK-Y-DFSIYVG-------FSFSEPE-KIK-----------------SIFNLKN-- 1778 (2492)
Q Consensus 1728 r~~~~v~wcp~~~t~Lad~Evey~~~-~-~~~~yv~-------f~~~~~~-~~~-----------------~~~~~~~-- 1778 (2492)
++.++|+|||.|+|+|||+||++... . +.+.+++ |++.+.. .+. ++++.+.
T Consensus 151 ~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~ 230 (878)
T 2v0c_A 151 RAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGA 230 (878)
T ss_dssp EEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEE
T ss_pred EcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCc
Confidence 99999999999999999999986431 1 3222222 2332210 000 1111000
Q ss_pred -----CCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCc-eEEEEecccc
Q psy15223 1779 -----LPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGN-IIGICKGIKL 1852 (2492)
Q Consensus 1779 -----~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~-~v~~~~G~~l 1852 (2492)
..+.+.+++||||||||||||+||||||+++|+...+++ +....+++.+++..++...+.. ...+++|. |
T Consensus 231 ~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~ 306 (878)
T 2v0c_A 231 EILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAP---EKREEVLAYVEAAKRKTEIERQAEGREKTGV-F 306 (878)
T ss_dssp EEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCG---GGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE-E
T ss_pred eEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccc---hhHHHHHHHHHHHhhhhhhhhhhccceeeeE-e
Confidence 012357899999999999999999999999998665432 2233334444433222111110 12567888 8
Q ss_pred cccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC---------CCcc
Q psy15223 1853 SKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD---------DGNF 1923 (2492)
Q Consensus 1853 ~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~---------~G~~ 1923 (2492)
.|+++.||++ ++++||+.++||++++|||+||+|||||++||++|++||| +++++||. +|.|
T Consensus 307 ~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~~~ 377 (878)
T 2v0c_A 307 LGAYALNPAT------GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL---PIKKVIERPGEPLPEPLERAY 377 (878)
T ss_dssp EEEEEECTTT------CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSSCCCSSCSSCC
T ss_pred cCcEEECCCC------CCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCC---CceeeeCCCCccccccccccc
Confidence 9999999998 8999999999999999999999999999999999999999 77777764 2345
Q ss_pred cc-----CCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1924 IS-----TLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1924 ~~-----~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++ +++.|.|+++++|++.|++.|+++|...+ ++.|
T Consensus 378 ~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~v~~------------------------ 417 (878)
T 2v0c_A 378 EEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG----------------RVTY------------------------ 417 (878)
T ss_dssp CSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE----------------EEEE------------------------
T ss_pred cCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCC----------------ceEE------------------------
Confidence 44 35789999999999999999999997311 1111
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHH---HHH--HhhcCccc-
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELI---AKK--IELNGIEI- 2072 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i---~~~--~~~~g~~~- 2072 (2492)
+++|||||||||||+|||+|+|++|+.+++..+++...+ .+. +...|.++
T Consensus 418 ------------------------rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl 473 (878)
T 2v0c_A 418 ------------------------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPL 473 (878)
T ss_dssp ------------------------SCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGG
T ss_pred ------------------------ecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChh
Confidence 256999999999999999999999987643333221100 111 11223222
Q ss_pred -----ccccchhhhcCCCccCceecccccccccccCcchhhhccCCc--------cccCCcCceeeecccchh------h
Q psy15223 2073 -----WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH--------KKQLIFPADLYLEGSDQH------R 2133 (2492)
Q Consensus 2073 -----w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--------~~~~~~P~Dl~~~G~D~~------r 2133 (2492)
|.+.. +|.++..++|++|||||||||||++..+....+ ..++|||+|+|++|+||+ +
T Consensus 474 ~~~~~~~~~~----cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~ 549 (878)
T 2v0c_A 474 EAHPEFYETT----CPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYS 549 (878)
T ss_dssp GGCHHHHEEE----CTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHH
T ss_pred hhhHhhcCCc----CCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHH
Confidence 22221 233456799999999999999977766543322 125789999999999994 4
Q ss_pred hhHHHHHHHHHHhcCCccccEEEEeeeEEcC----------------------------------------------CC-
Q psy15223 2134 GWFHSSLLTSIILNKSAPYKALLTHGFVVDS----------------------------------------------KG- 2166 (2492)
Q Consensus 2134 ~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~----------------------------------------------~G- 2166 (2492)
+||+++|....++.+++||++|++||||+|. +|
T Consensus 550 r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 629 (878)
T 2v0c_A 550 RFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGT 629 (878)
T ss_dssp HHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSS
T ss_pred HHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCC
Confidence 5666655544446789999999999999984 99
Q ss_pred ------ceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy15223 2167 ------KKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNI 2239 (2492)
Q Consensus 2167 ------~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~ 2239 (2492)
+|||||+||+|+|.++|++||||++|||+++ +++++|++||++.++++.++++|+||++++....+.. . .
T Consensus 630 ~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~-~--~ 706 (878)
T 2v0c_A 630 LHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLE-T--S 706 (878)
T ss_dssp EEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHT-C--C
T ss_pred chhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccc-c--c
Confidence 9999999999999999999999999999997 8999999999999999999999999999876654210 0 0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHH
Q psy15223 2240 NIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIW 2319 (2492)
Q Consensus 2240 ~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~ 2319 (2492)
...+...+...|+|+++++++++++++++|++|+|++|++.+++|++ ++++ |.+. . . ++++++
T Consensus 707 ~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~-~l~k-~~~~-------~--~------~~~~l~ 769 (878)
T 2v0c_A 707 GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLN-ALYE-YRKD-------R--P------VTPVYR 769 (878)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH-HHHH-------C--C------SCHHHH
T ss_pred cccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHhh-hccc-------c--h------hHHHHH
Confidence 11122345789999999999999999999999999999999999995 6654 4321 1 1 125799
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2320 HINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEK 2394 (2492)
Q Consensus 2320 ~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~~~~~~~r~~v~~~i~~ 2394 (2492)
++++.+++||+|||||+|||||+.|+ . +||+.++||+.++.... ++.++.++.++..+...++.
T Consensus 770 ~~l~~l~~LLaPf~P~~aEElw~~Lg-~-------~sv~~~~wP~~d~~~l~---~~~~~~~vqvngkvR~~i~v 833 (878)
T 2v0c_A 770 TAIRYYLQMLFPFAPHLAEELWHWFW-P-------DSLFEAGWPELDEKALE---KDVVEVAVQVNGAVAGTIHI 833 (878)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHC-S-------SCGGGSCCCCCCGGGGC-----------------------
T ss_pred HHHHHHHHHHcccchHHHHHHHHHcC-C-------CceeecCCCCCCHHHHH---HHHHHHHHhhHHHHHHHccc
Confidence 99999999999999999999999997 3 58999999997764322 34566666665555444433
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-117 Score=1231.53 Aligned_cols=699 Identities=18% Similarity=0.272 Sum_probs=574.6
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhC----
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG---- 512 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~---- 512 (2492)
.+|+... .++++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||||+|||..|++...
T Consensus 21 ~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~ 100 (810)
T 1wkb_A 21 KIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPK 100 (810)
T ss_dssp TTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHH
T ss_pred CCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCch
Confidence 3454443 33457899999999999999999999999999999999999999999999999999999999876421
Q ss_pred --------cCCCHHHHH--HHHHHHHHHHHHHHHHHHHHccccccccCeeecCC--hHHHHHHHHHHHHHHHcCCeEEeC
Q psy15223 513 --------KNLSPIEIQ--NKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD--FLNEANELRAFGIIFKKGYVYHGL 580 (2492)
Q Consensus 513 --------~~~~~~e~~--~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d--~~y~~~~~~~f~~l~~kGliyr~~ 580 (2492)
.+++..++. ..|++|+.++.+.|+++|++||+++||+++|+||| |.|++.++++|.+|+++|+||++.
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~ 180 (810)
T 1wkb_A 101 TIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180 (810)
T ss_dssp HHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECC
Confidence 145555553 36899999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccCCCCCcccccccccccceeccE--EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCC
Q psy15223 581 KPVNWCFDCKSALAEAEIEYKKKYDFS--IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEF 658 (2492)
Q Consensus 581 ~pv~w~p~~~taLae~Evey~~~~~~s--~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~ 658 (2492)
++|+|||.|+|+|||+||+|.+..+++ ++|+|++.+. ..+.+++||||||||||||+||||||++
T Consensus 181 ~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~-------------~~~~~l~v~TTrP~Tl~g~~av~v~P~~ 247 (810)
T 1wkb_A 181 HRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN-------------GEVIYLPAATLRPETVYGVTNMWVNPNA 247 (810)
T ss_dssp EEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSS-------------CSCCEEEEEESCGGGGGGCCEEEECTTS
T ss_pred eeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCC-------------CCceEEEEEcCCchHhhhhhEEEECCCC
Confidence 999999999999999999998766555 5589987542 1247899999999999999999999999
Q ss_pred CEEEEEecC-CCCceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCc
Q psy15223 659 DYALVHIKN-DPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTG 737 (2492)
Q Consensus 659 ~Y~~~~~~~-~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG 737 (2492)
+|++++..+ ..++.+|+++++++++..+. .....+.+++|++|.|++|.||+. ++++||++++||++++|||
T Consensus 248 ~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~G~~l~g~~~~~P~~------~~~ipi~~~~~V~~~~GTG 320 (810)
T 1wkb_A 248 TYVKAKVRRKDKEETWIVSKEAAYKLSFQD-REIEVIEEFKGEKLIGKYVRNPVS------GDEVIILPAEFVDPDNATG 320 (810)
T ss_dssp CEEEEEEEETTEEEEEEEEHHHHHHHTTSS-CEEEEEEECTTTTTTTCEEECSSS------CCEEEEEECTTSCTTSTTS
T ss_pred cEEEEEecCCCcceeeeeHHHHHHHHHhhh-cceEEEEEEEchhhcCCEEECCCC------CCeeEEEecCcccCCCCce
Confidence 999998643 12368999999988764332 112334899999999999999998 8899999999999999999
Q ss_pred cEEecCCCCHHHHHH----------HHHcCCCC-----CCccccc-----------------------CC----------
Q psy15223 738 IVHSAPAYGIEDFLI----------FKKQNMKD-----SDIINPV-----------------------MD---------- 769 (2492)
Q Consensus 738 ~Vh~aPahg~~D~~~----------~~~~~l~~-----~~~~~~v-----------------------d~---------- 769 (2492)
+||+|||||++||.+ |++|||+. -+++++| |+
T Consensus 321 ~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~ 400 (810)
T 1wkb_A 321 VVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTI 400 (810)
T ss_dssp CEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhh
Confidence 999999999999987 47889852 1244443 32
Q ss_pred ------CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEe-ecccceeecCCCCcchh
Q psy15223 770 ------DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYR-TTLQWFINMDKIPKNEK 842 (2492)
Q Consensus 770 ------~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r-~t~QWFi~~~~~~~~~~ 842 (2492)
+|+|+ .++|.|+++++|++.|++.|++.|.+...+++.| ||+|||||+|++++ +++|||+++++
T Consensus 401 ~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~------ 471 (810)
T 1wkb_A 401 YKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGN------ 471 (810)
T ss_dssp HHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTC------
T ss_pred hhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecCh------
Confidence 68887 6889999999999999999999999998877766 89999999999999 79999999986
Q ss_pred HHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeE---EEECCC-CccccCcHHHHHHHHHHHh--
Q psy15223 843 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF---FIHKKS-GKLHPKTLELIELIAKKIE-- 916 (2492)
Q Consensus 843 ~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~---~~~~~~-~~~~~~~~~~i~~~~~~~~-- 916 (2492)
..+++++++++++++|+|+++++++.+|+++++||||||||+||+|||+ |.++.. +... .-....++..+.
T Consensus 472 ~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~i---Yv~~~~~~~~~~~~ 548 (810)
T 1wkb_A 472 PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTI---YMAYYTISRHINKL 548 (810)
T ss_dssp HHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCce---eeehhhhHHHHHHh
Confidence 3499999999999999999999999999999999999999999999994 444421 1110 001112222221
Q ss_pred --hcCCccccccCchhhcCCC-----ccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHH
Q psy15223 917 --LNGIEIWQNLDIKEFLGDD-----AVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSS 989 (2492)
Q Consensus 917 --~~g~~~w~~~~~~~~~~~~-----~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~ 989 (2492)
..|.+ ++++.++. ...+.+ .+++|+||+||+++..+...+.++++|||+|+|++|+||+++|+...
T Consensus 549 ~~~~~~~------~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~ 621 (810)
T 1wkb_A 549 RQEGKLD------PEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFF 621 (810)
T ss_dssp HHTTCCC------GGGCCHHHHHHHHHSCCCH-HHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHH
T ss_pred HhhcCCC------HHHcCccceeeeecccccc-CccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHH
Confidence 22321 12221100 001112 25678888999877544322233467899999999999999998888
Q ss_pred HHHHHHhcCCCCc-eEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh-ccCcccccccCHHHHHHHHHH
Q psy15223 990 LLTSIILNKSAPY-KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA-STDYSKDLSISNEILNRVVET 1067 (2492)
Q Consensus 990 l~~~~~~~~~~p~-k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~-s~~~~~d~~fs~~~l~~~~~~ 1067 (2492)
++.+.++.+..|| +.+++|||+++ +|+|||||+||+|+|.+++++||+|++|||++ ++++++|++||++.++.+.+.
T Consensus 622 ~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~ 700 (810)
T 1wkb_A 622 IFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQ 700 (810)
T ss_dssp HHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHH
T ss_pred HHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 9999998887777 99999999996 89999999999999999999999999999997 588999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhh
Q psy15223 1068 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 1147 (2492)
Q Consensus 1068 ~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~ 1147 (2492)
++|++|+++++.++. .+. ...+...|+|++++++++++++.++|++|+|++|+..++.++++. .|+|++..
T Consensus 701 l~rl~n~~~~~~~~~---~~~-----~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~-~n~yi~~~ 771 (810)
T 1wkb_A 701 IERFYELISQFAEYE---VKG-----NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND-LRWYLRRT 771 (810)
T ss_dssp HHHHHHHHHHHHTCC---CCS-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---Ccc-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 999999999987542 111 123567899999999999999999999999999999776444454 58999998
Q ss_pred hhhhccccCChHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHcc
Q psy15223 1148 KDRLYTTKKNSHARRSA-QTSIWHINQSLLRLISPILSFTSEEAWSIFS 1195 (2492)
Q Consensus 1148 Kdrl~~~~~~~~~r~sa-~~~L~~il~~l~~lLaPilP~~aEeiw~~l~ 1195 (2492)
|++ + + ++ +++++++++.+++||+|||||+|||||+.|+
T Consensus 772 k~~------~---~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 772 EGR------D---D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp TTC------C---C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred cCc------c---h-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 853 1 1 34 8899999999999999999999999999884
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-118 Score=1212.88 Aligned_cols=670 Identities=19% Similarity=0.296 Sum_probs=512.9
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
+++++++|++||++|+++++|+... +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 24 ~y~~~~iE~kw~~~W~~~~~f~~~~--~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~ 101 (880)
T 4arc_A 24 QYRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDA 101 (880)
T ss_dssp SCCHHHHHHHHHHHHHHTTTTCCCC--CTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECC
T ss_pred cCChHHHHHHHHHHHHhcCCcccCC--cCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccc
Confidence 5789999999999999999998743 34788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1649 HGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
||+|||.+|++. +++|.+ |+.++++.|++||++||+++||+++|.|+||.|+++++|+|.+|+++||||+
T Consensus 102 ~Glpie~~a~~~---g~~p~~-------~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 102 FGLPAEGAAVKN---NTAPAP-------WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CSTHHHHHHHHT---TSCHHH-------HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCcHHHHHHHHc---CCCHHH-------HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999999876 777754 8999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCccccccccc------------ceeeecceEEEEEeccCc-------------hhh----HhhhccCCC
Q psy15223 1729 GLKPVNWCFDCKSALAEAEIE------------YKKKYDFSIYVGFSFSEP-------------EKI----KSIFNLKNL 1779 (2492)
Q Consensus 1729 ~~~~v~wcp~~~t~Lad~Eve------------y~~~~~~~~yv~f~~~~~-------------~~~----~~~~~~~~~ 1779 (2492)
+.++|+|||.|+|+|||+||+ +++. +++|+++.-... +.+ .++++.+.+
T Consensus 172 ~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~--~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g 249 (880)
T 4arc_A 172 KTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEI--PQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEG 249 (880)
T ss_dssp EEECC------------------------------CE--EEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEE
T ss_pred eceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEc--cceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccc
Confidence 999999999999999997663 3332 334433221000 000 011111000
Q ss_pred -------CCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCc---CceE--EEE
Q psy15223 1780 -------PSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFK---GNII--GIC 1847 (2492)
Q Consensus 1780 -------~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~---~~~v--~~~ 1847 (2492)
.+.+.+|+|||||||||||++||||||+++|+.....+ ...++.+.+..+.. ...+ .+.
T Consensus 250 ~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (880)
T 4arc_A 250 VEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAFIDECRNTKVAEAEMATMEK 320 (880)
T ss_dssp EEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGG---------CHHHHHHHTC----------------
T ss_pred eEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcC---------hHHHHHHHHHHhccCchhhhhcccee
Confidence 12356899999999999999999999999987654322 11233333322211 1112 356
Q ss_pred ecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC---------
Q psy15223 1848 KGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM--------- 1918 (2492)
Q Consensus 1848 ~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd--------- 1918 (2492)
+|. +.|+++.||++ ++++||+.+|||++++|||+||+|||||++||++|++|||+...++.+.|
T Consensus 321 ~g~-~~g~~~~~P~~------~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~ 393 (880)
T 4arc_A 321 KGV-DTGFKAVHPLT------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQ 393 (880)
T ss_dssp CEE-EEEEEEECTTT------CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSS
T ss_pred ecc-ccCcEEecCCC------CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccc
Confidence 776 78999999999 99999999999999999999999999999999999999994444443332
Q ss_pred ---CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1919 ---DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1919 ---~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
++|++. +++.|.||++++|+++|++.|+++|.+.+.
T Consensus 394 ~~~~~g~~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~---------------------------------------- 432 (880)
T 4arc_A 394 ALTEKGVLF-NSGEFNGLDHEAAFNAIADKLTAMGVGERK---------------------------------------- 432 (880)
T ss_dssp CCCSCCCBC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE----------------------------------------
T ss_pred cccCCceee-cCcccCCCCHHHHHHHHHHHHHHcCCccee----------------------------------------
Confidence 245443 468899999999999999999999975332
Q ss_pred HHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHH--hhcC----
Q psy15223 1996 RESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI--ELNG---- 2069 (2492)
Q Consensus 1996 k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~--~~~g---- 2069 (2492)
++| +++|||||||||||+|||+|||++||.+++..+++...+++.+ ...|
T Consensus 433 ----------v~y--------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~ 488 (880)
T 4arc_A 433 ----------VNY--------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIK 488 (880)
T ss_dssp ----------EEE--------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHH
T ss_pred ----------EEE--------------EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchH
Confidence 111 2579999999999999999999999976543333211011000 0011
Q ss_pred -cccccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc--------ccCCcCceeeecccchh------hh
Q psy15223 2070 -IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--------KQLIFPADLYLEGSDQH------RG 2134 (2492)
Q Consensus 2070 -~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--------~~~~~P~Dl~~~G~D~~------r~ 2134 (2492)
...|.+..| | +..++||+|||||||||||++.++....+. .++|||+|+|++|.||. ..
T Consensus 489 ~~~~w~~~~c----p--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaR 562 (880)
T 4arc_A 489 ADPEWAKTTV----N--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFR 562 (880)
T ss_dssp HSTTTTEEES----S--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHH
T ss_pred hCccceeecc----C--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHH
Confidence 123433322 1 457899999999999999887776654321 15689999999999983 33
Q ss_pred hHHHHHHHHHHhcCCccccEEEEeeeEE-------cCCCc------------------------------------eeee
Q psy15223 2135 WFHSSLLTSIILNKSAPYKALLTHGFVV-------DSKGK------------------------------------KMSK 2171 (2492)
Q Consensus 2135 wf~~~l~~~~~l~~~~pfk~v~~hG~vl-------d~~G~------------------------------------KMSK 2171 (2492)
||+++|....++.+++||+++++||||+ |.+|+ ||||
T Consensus 563 f~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSK 642 (880)
T 4arc_A 563 FFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSK 642 (880)
T ss_dssp HHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCT
T ss_pred HHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccC
Confidence 4566666666678899999999999997 88888 9999
Q ss_pred ccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchH
Q psy15223 2172 SKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEI 2250 (2492)
Q Consensus 2172 S~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~ 2250 (2492)
|+||+|+|.++|++||||++|||+++. ++++|++||++.++.+.++++|+||++++....... + ......+...
T Consensus 643 SkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~--~---~~~~~~l~~~ 717 (880)
T 4arc_A 643 SKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV--A---ALNVDALTEN 717 (880)
T ss_dssp TTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCC--C---CCCSTTCCHH
T ss_pred cCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc--c---ccccccCCHH
Confidence 999999999999999999999999975 899999999999999999999999999987654211 0 1112345788
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHH
Q psy15223 2251 DKYAIINITNLQKEILSHYR-MYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLI 2329 (2492)
Q Consensus 2251 D~~il~~l~~~~~~v~~a~e-~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lL 2329 (2492)
|+|+++++++++++++++|+ +|+|++|++.+++|+ +++++ | . .+ ..+++.+++++++.+++||
T Consensus 718 D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~--~~---~~~~~~~l~~~l~~ll~LL 781 (880)
T 4arc_A 718 QKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A---------P--TD---GEQDRALMQEALLAVVRML 781 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------C--CS---SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHh-h---------h--cc---chHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 899999999999999 45543 1 1 11 1245678999999999999
Q ss_pred hccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCc
Q psy15223 2330 SPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 2367 (2492)
Q Consensus 2330 aPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~ 2367 (2492)
+|||||+|||||+.|+.. +||+.++||++++
T Consensus 782 aPf~PhiaEElW~~Lg~~-------~sv~~~~wP~~d~ 812 (880)
T 4arc_A 782 NPFTPHICFTLWQELKGE-------GDIDNAPWPVADE 812 (880)
T ss_dssp TTTSHHHHHHHHHHTTCS-------SCGGGSCCCCCCH
T ss_pred hhccHHHHHHHHHHcCCC-------CeEEeCCCCCCCH
Confidence 999999999999999864 6999999998653
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-115 Score=1202.15 Aligned_cols=679 Identities=20% Similarity=0.292 Sum_probs=512.8
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||.+|++. +.+|.
T Consensus 29 ~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~---g~~~~------- 98 (878)
T 2v0c_A 29 PGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF---GVHPK------- 98 (878)
T ss_dssp CC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHT---TCCHH-------
T ss_pred cCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHc---CCCHH-------
Confidence 45678899999999999999999999999999999999999999999999999999999999885 66764
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccc-ee
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKK-KY 604 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~-~~ 604 (2492)
+|+.++++.|+++|++||+++||+++|+|+||.|+++++++|.+|+++|+||++.++|+|||.|+|+|||+||++.. ..
T Consensus 99 ~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~ 178 (878)
T 2v0c_A 99 DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWR 178 (878)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESS
T ss_pred HHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998643 11
Q ss_pred -ccEEEEE-------eecCCch-hhh---------------------------hhhccCCCCCCCeEEEEEecCCccccc
Q psy15223 605 -DFSIYVG-------FSFSEPE-KIK---------------------------SIFNLKNLPSGKGYIVIWTSTPWTIPA 648 (2492)
Q Consensus 605 -~~s~yv~-------f~~~~~~-~~~---------------------------~~~~~~~~~~~~~~~~iwTTtPwTl~~ 648 (2492)
+.+.++. |++..-. .+. -.|.+ .+.+.+++|||||||||||
T Consensus 179 ~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~---~~~~~~l~v~TTrP~Tl~g 255 (878)
T 2v0c_A 179 HEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV---EGKEVRIPVFTTRPDTLFG 255 (878)
T ss_dssp CTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEB---TTSSCEEEEEESCGGGGGG
T ss_pred cCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEe---cCCCceEEEEeCCchhhhC
Confidence 3232222 2221100 000 00111 1235789999999999999
Q ss_pred ccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCCcCcE-EEEEecccccCCEEecCCcccccCCCceecEEec
Q psy15223 649 NQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNI-IGICKGIKLSKINFFHPLSNIDINYNRLSPIYLG 727 (2492)
Q Consensus 649 n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~ 727 (2492)
|+||||||+++|+.+..++ +....++++++++..+...+... ..+++|. |.|+++.||++ ++++||+.+
T Consensus 256 ~~~vav~pe~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~------~~~ipi~~~ 325 (878)
T 2v0c_A 256 ATFLVLAPEHPLTLELAAP---EKREEVLAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPAT------GERIPIWTA 325 (878)
T ss_dssp CCEEEECTTSHHHHHHSCG---GGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTT------CCEEEEEEC
T ss_pred cEEEEEcCCCeeeehhccc---hhHHHHHHHHHHHhhhhhhhhhhccceeeeE-ecCcEEECCCC------CCEeEEEEe
Confidence 9999999999998655432 22233344444433222111111 2467788 89999999998 899999999
Q ss_pred CCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC---------CCccccc-----CCCCCCcchhhchHHHH
Q psy15223 728 DYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD---------DGNFIST-----LPLFGGMSIWKASKLIC 793 (2492)
Q Consensus 728 ~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~---------~G~~~~~-----~~~~~G~~v~~a~~~i~ 793 (2492)
+||+++.|||+||+|||||++||++|++||| +++++||. +|.|+++ .+.|.|+++++|++.|+
T Consensus 326 ~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L---~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii 402 (878)
T 2v0c_A 326 DYVLFGYGTGAIMAVPAHDQRDYEFARKFGL---PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVI 402 (878)
T ss_dssp TTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHH
T ss_pred CcccCCCCCceEEeCCCCCHHHHHHHHHcCC---CceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999999 77788874 3466654 47899999999999999
Q ss_pred HHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhc
Q psy15223 794 SYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILN 873 (2492)
Q Consensus 794 ~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~ 873 (2492)
+.|++.|...+ ++.| +
T Consensus 403 ~~L~~~g~~~~----------------~v~~------------------------------------------------r 418 (878)
T 2v0c_A 403 AWLEEKGLGKG----------------RVTY------------------------------------------------R 418 (878)
T ss_dssp HHHHHHTSEEE----------------EEEE------------------------------------------------S
T ss_pred HHHHHCCCCCC----------------ceEE------------------------------------------------e
Confidence 99999998421 2221 2
Q ss_pred CCCeeeeccccCCceeeEEEECCCCccccCcHHH---HHHHHHH--HhhcCCccccccCchhh----cCCCccCceecCC
Q psy15223 874 RPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL---IELIAKK--IELNGIEIWQNLDIKEF----LGDDAVNYKKSND 944 (2492)
Q Consensus 874 ~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~---i~~~~~~--~~~~g~~~w~~~~~~~~----~~~~~~~~~~~~d 944 (2492)
++||||||||+||+|||+|||++||.+.....++ +.++.+. +...|.+++-. .+++ ++.++..++|++|
T Consensus 419 lrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~--~~~~~~~~cp~cg~~~~retD 496 (878)
T 2v0c_A 419 LRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEA--HPEFYETTCPKCGGPAKRDTD 496 (878)
T ss_dssp CCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGG--CHHHHEEECTTTCSEEEECCC
T ss_pred cccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhh--hHhhcCCcCCCCCCcceeccc
Confidence 4699999999999999999999998764222221 0011111 12224443211 1222 2223457999999
Q ss_pred ccccccccccccchhcccC--------ccccCCcCeeeeecccccc------hhhHHHHHHHHHHhcCCCCceEEEEeeE
Q psy15223 945 TLDVWFDSGITHQTVIRGS--------HKKQLIFPADLYLEGSDQH------RGWFHSSLLTSIILNKSAPYKALLTHGF 1010 (2492)
Q Consensus 945 vlDvWfdSg~~~~~~~~~~--------~~~~~~~p~Dl~~~G~D~~------rgwf~s~l~~~~~~~~~~p~k~v~~hG~ 1010 (2492)
||||||||++++....... .+.++|||+|+|++|+||+ ++||+++|....++.+++||++|++|||
T Consensus 497 tmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~ 576 (878)
T 2v0c_A 497 TMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGM 576 (878)
T ss_dssp EECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCC
T ss_pred cccccccccchhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecce
Confidence 9999999985544332111 1125789999999999994 4566665554445678999999999999
Q ss_pred EEcC----------------------------------------------CC-------ccccccCCCccCcchhhhhcC
Q psy15223 1011 VVDS----------------------------------------------KG-------KKMSKSKGNIIKPQKLCNLFG 1037 (2492)
Q Consensus 1011 vld~----------------------------------------------~G-------~KMSKS~GN~i~p~~ii~~yG 1037 (2492)
|+|+ +| +|||||+||+|+|.++|++||
T Consensus 577 vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yG 656 (878)
T 2v0c_A 577 VLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQG 656 (878)
T ss_dssp EEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSC
T ss_pred EeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcC
Confidence 9984 99 999999999999999999999
Q ss_pred hhhHHHHhhc-cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHH
Q psy15223 1038 AEILRLWVAS-TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEIL 1116 (2492)
Q Consensus 1038 aD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~ 1116 (2492)
||++|||+++ +++++|++||++.++++.++++|+||++++.+.++. +.....+...+...|+|++++++++++++.
T Consensus 657 ADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~---~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~ 733 (878)
T 2v0c_A 657 ADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALL---ETSGVFQAEALEGKDRELYGKLHETLKKVT 733 (878)
T ss_dssp HHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH---TCCCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhccc---ccccccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999997 899999999999999999999999999988765431 000111233467899999999999999999
Q ss_pred HHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1117 SHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1117 ~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
++|++|+|++|++.|++|++ ++++ |.+ . + . ++++++++++.+++||+|||||+|||||+.|+
T Consensus 734 ~~~e~~~f~~Ai~~l~~f~~-~l~k-~~~----~---~--~------~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg- 795 (878)
T 2v0c_A 734 EDLEALRFNTAIAALMEFLN-ALYE-YRK----D---R--P------VTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW- 795 (878)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HHHH-HHH----H---C--C------SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-
T ss_pred HHHHcccHHHHHHHHHHHHH-HHhh-hcc----c---c--h------hHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-
Confidence 99999999999999999994 6755 332 1 1 1 12689999999999999999999999999997
Q ss_pred CCccccCCCceeeccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 1197 KNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 1247 (2492)
Q Consensus 1197 ~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~~~~~~lr~~v~~~le~~R~ 1247 (2492)
. +||+.+.||+.++... .++.++.+++++++++..++..|.
T Consensus 796 ~-------~sv~~~~wP~~d~~~l---~~~~~~~~vqvngkvR~~i~v~~~ 836 (878)
T 2v0c_A 796 P-------DSLFEAGWPELDEKAL---EKDVVEVAVQVNGAVAGTIHIPKD 836 (878)
T ss_dssp S-------SCGGGSCCCCCCGGGG---C-----------------------
T ss_pred C-------CceeecCCCCCCHHHH---HHHHHHHHHhhHHHHHHHcccCcC
Confidence 3 6999999998665322 246688999999988888777664
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-112 Score=1155.85 Aligned_cols=632 Identities=20% Similarity=0.304 Sum_probs=487.7
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||.+|++. +++|.+
T Consensus 49 ~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~---g~~p~~------ 119 (880)
T 4arc_A 49 DESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKN---NTAPAP------ 119 (880)
T ss_dssp CTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHT---TSCHHH------
T ss_pred cCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHc---CCCHHH------
Confidence 34678999999999999999999999999999999999999999999999999999999999875 677755
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc-------
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI------- 598 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev------- 598 (2492)
|+.++++.|++||++||+++||+++|+|+||.|.++++++|.+|+++||||++.++|+|||.|+|+||++||
T Consensus 120 -~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~ 198 (880)
T 4arc_A 120 -WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWR 198 (880)
T ss_dssp -HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC----------------------
T ss_pred -HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred -----cccce-------------------------------------eccEEEEEeecCCchhhhhhhccCCCCCCCeEE
Q psy15223 599 -----EYKKK-------------------------------------YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYI 636 (2492)
Q Consensus 599 -----ey~~~-------------------------------------~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~ 636 (2492)
+|++. .|.+++|+|++.+ .+.++
T Consensus 199 ~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~---------------~~~~i 263 (880)
T 4arc_A 199 CDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVND---------------YDNTL 263 (880)
T ss_dssp --------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETT---------------CSSEE
T ss_pred CCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecC---------------CCceE
Confidence 44432 2334555555532 34689
Q ss_pred EEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC---CcCcEE--EEEecccccCCEEecCC
Q psy15223 637 VIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG---FKGNII--GICKGIKLSKINFFHPL 711 (2492)
Q Consensus 637 ~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~---~~~~~~--~~~~G~~l~g~~~~~P~ 711 (2492)
+|||||||||+||+||||||+++|+.....+ +..++++.++.+ .....+ .+.+|. +.|+++.||+
T Consensus 264 ~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~ 333 (880)
T 4arc_A 264 TVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAFIDECRNTKVAEAEMATMEKKGV-DTGFKAVHPL 333 (880)
T ss_dssp EEEESCGGGGGGCCEEEECTTCHHHHHHGGG---------CHHHHHHHTC----------------CEE-EEEEEEECTT
T ss_pred EEEeCCchhhcCCeEEEECCCcHHHHHHhcC---------hHHHHHHHHHHhccCchhhhhccceeecc-ccCcEEecCC
Confidence 9999999999999999999999987654322 122333333222 111122 356776 7899999999
Q ss_pred cccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC------CCcccc-----cCCCC
Q psy15223 712 SNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD------DGNFIS-----TLPLF 780 (2492)
Q Consensus 712 ~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~------~G~~~~-----~~~~~ 780 (2492)
+ ++++||+.++||+++.|||+||++||||++||++|++||||...++.|.|. +|.|++ +.+.|
T Consensus 334 ~------~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~ 407 (880)
T 4arc_A 334 T------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEF 407 (880)
T ss_dssp T------CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGG
T ss_pred C------CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCccc
Confidence 9 899999999999999999999999999999999999999955544444321 223333 35789
Q ss_pred CCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHHhhcceEec
Q psy15223 781 GGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFP 860 (2492)
Q Consensus 781 ~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P 860 (2492)
.||++++|++.|++.|++.|.+.+. + +|
T Consensus 408 ~Gl~~~eA~~~ii~~L~~~g~~~~~----------------v----------------------------------~y-- 435 (880)
T 4arc_A 408 NGLDHEAAFNAIADKLTAMGVGERK----------------V----------------------------------NY-- 435 (880)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSEEEE----------------E----------------------------------EE--
T ss_pred CCCCHHHHHHHHHHHHHHcCCccee----------------E----------------------------------EE--
Confidence 9999999999999999999985442 1 11
Q ss_pred chhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHH--hhcC-----CccccccCchhhcC
Q psy15223 861 SWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKI--ELNG-----IEIWQNLDIKEFLG 933 (2492)
Q Consensus 861 ~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~--~~~g-----~~~w~~~~~~~~~~ 933 (2492)
+++|||||||||||+|||+|||++||.+.+...++...+++.+ ...| ...|....
T Consensus 436 ------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~------ 497 (880)
T 4arc_A 436 ------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTT------ 497 (880)
T ss_dssp ------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEE------
T ss_pred ------------EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeec------
Confidence 2469999999999999999999999976422221100000000 0011 11222111
Q ss_pred CCccCceecCCccccccccccccchhcccCc--------cccCCcCeeeeecccccc------hhhHHHHHHHHHHhcCC
Q psy15223 934 DDAVNYKKSNDTLDVWFDSGITHQTVIRGSH--------KKQLIFPADLYLEGSDQH------RGWFHSSLLTSIILNKS 999 (2492)
Q Consensus 934 ~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~--------~~~~~~p~Dl~~~G~D~~------rgwf~s~l~~~~~~~~~ 999 (2492)
+.+..++|++|||||||||+|++..+....+ ..++|||+|+|++|.||. ..||++.|....++.++
T Consensus 498 cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ 577 (880)
T 4arc_A 498 VNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSD 577 (880)
T ss_dssp SSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCS
T ss_pred cCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 1256799999999999999865544432211 115799999999999984 23456666666667889
Q ss_pred CCceEEEEeeEEE-------cCCCc------------------------------------cccccCCCccCcchhhhhc
Q psy15223 1000 APYKALLTHGFVV-------DSKGK------------------------------------KMSKSKGNIIKPQKLCNLF 1036 (2492)
Q Consensus 1000 ~p~k~v~~hG~vl-------d~~G~------------------------------------KMSKS~GN~i~p~~ii~~y 1036 (2492)
.||+++++||||+ |.+|+ |||||+||+|+|.++|++|
T Consensus 578 ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekY 657 (880)
T 4arc_A 578 EPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERY 657 (880)
T ss_dssp CSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHH
T ss_pred CChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHc
Confidence 9999999999997 88888 9999999999999999999
Q ss_pred ChhhHHHHhhcc-CcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHH
Q psy15223 1037 GAEILRLWVAST-DYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEI 1115 (2492)
Q Consensus 1037 GaD~lRl~l~s~-~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 1115 (2492)
|||++|||+++. ++++|++||++.++++.++++|+||++++.+..... + ......+...|+|++++++++++++
T Consensus 658 GADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~--~---~~~~~~l~~~D~~ll~~l~~~i~~V 732 (880)
T 4arc_A 658 GADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV--A---ALNVDALTENQKALRRDVHKTIAKV 732 (880)
T ss_dssp CHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCC--C---CCCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc--c---ccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999975 899999999999999999999999999987664211 0 1122346788999999999999999
Q ss_pred HHHHh-ccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHc
Q psy15223 1116 LSHYR-MYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIF 1194 (2492)
Q Consensus 1116 ~~a~~-~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l 1194 (2492)
+++|+ +|+|++|++.|++|+ ++++. | . .++ .+++.+++++++.+++||+|||||+|||||+.|
T Consensus 733 ~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~--~~~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~L 796 (880)
T 4arc_A 733 TDDIGRRQTFNTAIAAIMELM-NKLAK-A---------P--TDG---EQDRALMQEALLAVVRMLNPFTPHICFTLWQEL 796 (880)
T ss_dssp HHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------C--CSS---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHhhhchhHHHHHHHHHH-HHHHh-h---------h--ccc---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHc
Confidence 99999 899999999999999 45654 2 1 111 246789999999999999999999999999999
Q ss_pred cCCCccccCCCceeeccCCCCc
Q psy15223 1195 SDKNFYIESGETIFTQLHYKLP 1216 (2492)
Q Consensus 1195 ~~~~~~~~~~~SV~~~~wp~~~ 1216 (2492)
+.. +||+.+.||+.+
T Consensus 797 g~~-------~sv~~~~wP~~d 811 (880)
T 4arc_A 797 KGE-------GDIDNAPWPVAD 811 (880)
T ss_dssp TCS-------SCGGGSCCCCCC
T ss_pred CCC-------CeEEeCCCCCCC
Confidence 763 699999999854
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-81 Score=835.22 Aligned_cols=470 Identities=18% Similarity=0.233 Sum_probs=397.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
+..++|+|+.|||||||.||||||+|++++||++||+||+||+|+|++||||||+|||.+|+++ +++|.+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~---g~~~~e------- 75 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK---QVSPYD------- 75 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHT---TSCHHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHc---CCCHHH-------
Confidence 3457899999999999999999999999999999999999999999999999999999999986 788876
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceecc
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~ 606 (2492)
+++++++.++++|++|||++|| +++||||.|.+.++++|.+|+++|+||++.++|+|||+|+|+|||+||+..
T Consensus 76 ~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~----- 148 (542)
T 3u1f_A 76 FTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDG----- 148 (542)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEE-----
T ss_pred HHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcc-----
Confidence 7888999999999999998887 688999999999999999999999999999999999999999999887500
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
T Consensus 149 -------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 149 -------------------------------------------------------------------------------- 148 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
+
T Consensus 149 -------------------------------------------------------~------------------------ 149 (542)
T 3u1f_A 149 -------------------------------------------------------V------------------------ 149 (542)
T ss_dssp -------------------------------------------------------E------------------------
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred cCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 767 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 846 (2492)
Q Consensus 767 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~ 846 (2492)
|..| +.+++|||||+|++++.++|||+++++ ++
T Consensus 150 -~~~g--------------------------------------~~~~~~~~sg~~ve~~~~~~~f~~l~~--------~~ 182 (542)
T 3u1f_A 150 -DKDG--------------------------------------NPCKVSLESGHVVTWVSEENYMFRLSA--------FR 182 (542)
T ss_dssp -CTTS--------------------------------------CEEEEETTTCCBEEEEEEEEEEECGGG--------GH
T ss_pred -cccC--------------------------------------ccccccCCCCCcceeeccccceecchh--------HH
Confidence 0001 235789999999999999999999998 89
Q ss_pred HHHHHHhhc--ceEecchhhHHHHHHHhc-CCCeeeecccc----CCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 847 ESAITAINK--IKFFPSWGKDRLKSMILN-RPDWTISRQRH----WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 847 ~~~~~~i~~--v~~~P~~~~~rl~~~l~~-~~DWcISRqr~----WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
+++++++++ ..+.|++.++.+.+|+++ ++||||||||+ ||+|||..-
T Consensus 183 ~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~-------------------------- 236 (542)
T 3u1f_A 183 ERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNP-------------------------- 236 (542)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE--------------------------
T ss_pred HHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCc--------------------------
Confidence 999998864 789999999999999985 89999999998 999999421
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhcccCc-------------cccCCcCeeeeecccccchhhH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------------KKQLIFPADLYLEGSDQHRGWF 986 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------------~~~~~~p~Dl~~~G~D~~rgwf 986 (2492)
..+++||||+...+.+...... .....||+|+|++|+||++ |
T Consensus 237 -----------------------~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~--f 291 (542)
T 3u1f_A 237 -----------------------DHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--F 291 (542)
T ss_dssp -----------------------EEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHH--H
T ss_pred -----------------------CeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccc--c
Confidence 1234444444333322221100 0023579999999999986 7
Q ss_pred HHHHHHHHHhc-CCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHH
Q psy15223 987 HSSLLTSIILN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 1064 (2492)
Q Consensus 987 ~s~l~~~~~~~-~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~ 1064 (2492)
|++++++.++. |..|++.+++|||+. .+|+|||||+||+|+|.+++++||+|+||||+++ +++++|++|+++.+.+.
T Consensus 292 h~~~~~a~l~~~g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~ 370 (542)
T 3u1f_A 292 HAIYWPAFLLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIAR 370 (542)
T ss_dssp HHTHHHHHHHHHTCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHH
T ss_pred ccchhHHHHHhhcccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHH
Confidence 88888877654 666779999999954 7899999999999999999999999999999997 67899999999998776
Q ss_pred HH--HHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Q psy15223 1065 VE--TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 1142 (2492)
Q Consensus 1065 ~~--~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~ 1142 (2492)
.+ ..++|+|++++++....+++. ..+....+...|+|++++++++++++.++|++|+|++|++.|++|+ +++|+
T Consensus 371 ~n~~l~n~l~N~~~r~~~~~~~~~~--~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~ 446 (542)
T 3u1f_A 371 LNGELADTLGNLVMRCTSAKINVNG--EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINA 446 (542)
T ss_dssp HHHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhcccC--CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 54 567899999888776544432 2334456788999999999999999999999999999999999998 57999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1143 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1143 Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
|++..|++-... .+..++++++.++.++++.+++||+|||||+|||||+.|+-
T Consensus 447 Y~~~~~pw~l~k-~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~ 499 (542)
T 3u1f_A 447 YVTDMAPWKLVK-TDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499 (542)
T ss_dssp HHHHHCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHhcCchhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCC
Confidence 999999853321 35566778888999999999999999999999999999974
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-79 Score=832.22 Aligned_cols=486 Identities=21% Similarity=0.308 Sum_probs=397.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
++|+|++|||||||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++. +++|.+ |+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~---G~~p~e-------~~ 71 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPRE-------IV 71 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHH-------HH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc---CCCHHH-------HH
Confidence 47999999999999999999999 99999999999999999999999999999999999987 778765 89
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++++.|+++|++|||++|| +++|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g-------- 141 (722)
T 1rqg_A 72 DEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG-------- 141 (722)
T ss_dssp HHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS--------
T ss_pred HHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc--------
Confidence 99999999999999996655 79999999999999999999999999999999999999999999966530
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
|.| .
T Consensus 142 --------------------------------tcP-------------~------------------------------- 145 (722)
T 1rqg_A 142 --------------------------------TCP-------------Y------------------------------- 145 (722)
T ss_dssp --------------------------------BCS-------------S-------------------------------
T ss_pred --------------------------------ccC-------------c-------------------------------
Confidence 111 0
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+|.+| .+|- . | +
T Consensus 146 --------------------------------------------------------c~~~~-----~~Gd----~-c--~ 157 (722)
T 1rqg_A 146 --------------------------------------------------------CGAED-----QKGD----Q-C--E 157 (722)
T ss_dssp --------------------------------------------------------SCCSC-----CCTT----T-C--S
T ss_pred --------------------------------------------------------cCCcc-----CCcc----h-h--h
Confidence 00000 0000 0 0 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
..|++. +..++.+|+|||||+|++++.++|||+++++ ++++
T Consensus 158 ~~G~~l-------------------------------~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~--------~~~~ 198 (722)
T 1rqg_A 158 VCGRPL-------------------------------TPEILINPRCAICGRPISFRDSAHYYIKMQD--------FAER 198 (722)
T ss_dssp SSCCCC-------------------------------CTTSSBSCBCTTTCCBCEEEEEEEEEECGGG--------THHH
T ss_pred hccccc-------------------------------ChhhccCCcccCCCcEeEEEEeccEEEEhHH--------HHHH
Confidence 011110 0113457999999999999999999999998 9999
Q ss_pred HHHHhhcceEecchhhHHHHHHH-hcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 849 AITAINKIKFFPSWGKDRLKSMI-LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 849 ~~~~i~~v~~~P~~~~~rl~~~l-~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
+++.+++..| |++.++++.+|| ++++|||||||++||+|||++++ |
T Consensus 199 l~~~~~~~~w-p~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~---g----------------------------- 245 (722)
T 1rqg_A 199 LKRWIEKQPW-KPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE---D----------------------------- 245 (722)
T ss_dssp HHHHHHSSCC-CHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS---S-----------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHCCCcccceeccccCccccCcccc---C-----------------------------
Confidence 9999998884 889999999999 79999999999999999997421 0
Q ss_pred chhhcCCCccCceecCCccccccccccccchhccc-------CccccCCcCe------eeeecccccchhhHHHHHHHHH
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIFPA------DLYLEGSDQHRGWFHSSLLTSI 994 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~p~------Dl~~~G~D~~rgwf~s~l~~~~ 994 (2492)
-+.+++|||||+.+.+.+.++. ...+..|||+ ++|+.|+|+++ ||...|++.
T Consensus 246 -------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~--fH~~~wpA~ 310 (722)
T 1rqg_A 246 -------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP--FHAIFWPAF 310 (722)
T ss_dssp -------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHH--HHHTHHHHH
T ss_pred -------------CCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccc--cchhhhHHH
Confidence 0235789999988876654421 1112345652 38999999998 678778776
Q ss_pred Hhc-C-----------CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-CcccccccCHHHH
Q psy15223 995 ILN-K-----------SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 1061 (2492)
Q Consensus 995 ~~~-~-----------~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~~d~~fs~~~l 1061 (2492)
+.. + ..| ++|++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++. ++++|++|+++.+
T Consensus 311 l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~ 388 (722)
T 1rqg_A 311 LMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDF 388 (722)
T ss_dssp HHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHH
T ss_pred HhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHH
Confidence 554 2 345 99999999997 9999999999999999999999999999999985 8999999999998
Q ss_pred HHHHH--HHHHHHHHH----HHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy15223 1062 NRVVE--TYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 1135 (2492)
Q Consensus 1062 ~~~~~--~~~kl~n~~----rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~ 1135 (2492)
.+..+ .+++++|++ +|+..+.++..+ ....+...|+|++++++++.+++.++|++|+|++|++.+++|+
T Consensus 389 ~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~-----~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~ 463 (722)
T 1rqg_A 389 KVRINEELVNNLGNFVHRALTFVNRYFDGVVP-----ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA 463 (722)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77544 456666654 444444332111 1233567899999999999999999999999999999999998
Q ss_pred hhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1136 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1136 ~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
+++|+|++..|+|++.. .+..+.++++.+++++++.++++|+|||||+||+||+.|+.
T Consensus 464 --~~~n~Yi~~~kpw~~~k-~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 464 --SFGNRYFDHKQPWKTAK-EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 521 (722)
T ss_dssp --HHHHHHHHTTCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred --HHHHHHHHhcCchhhcC-CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCC
Confidence 58999999999998874 24444567788889999999999999999999999999975
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-79 Score=820.40 Aligned_cols=470 Identities=19% Similarity=0.234 Sum_probs=395.4
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
+..++|+|+.|||||||.||||||++++++||++||+||+||+|+|++||||||+|||.+|+++ +++|.+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~---g~~~~e------- 75 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK---QVSPYD------- 75 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHT---TSCHHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHc---CCCHHH-------
Confidence 4567899999999999999999999999999999999999999999999999999999999987 888876
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~ 1756 (2492)
+++++++.++++|++||+++|| +++|+||.|.+.++++|.+|+++|+||++.++|+|||+|+|+|+|+||+..
T Consensus 76 ~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~----- 148 (542)
T 3u1f_A 76 FTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDG----- 148 (542)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEE-----
T ss_pred HHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcc-----
Confidence 7888999999999999999887 678999999999999999999999999999999999999999999887510
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
T Consensus 149 -------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 149 -------------------------------------------------------------------------------- 148 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
+
T Consensus 149 -------------------------------------------------------~------------------------ 149 (542)
T 3u1f_A 149 -------------------------------------------------------V------------------------ 149 (542)
T ss_dssp -------------------------------------------------------E------------------------
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred cCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 1917 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 1996 (2492)
Q Consensus 1917 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k 1996 (2492)
|..| +.+++|||||+|++++.++|||+++++ ++
T Consensus 150 -~~~g--------------------------------------~~~~~~~~sg~~ve~~~~~~~f~~l~~--------~~ 182 (542)
T 3u1f_A 150 -DKDG--------------------------------------NPCKVSLESGHVVTWVSEENYMFRLSA--------FR 182 (542)
T ss_dssp -CTTS--------------------------------------CEEEEETTTCCBEEEEEEEEEEECGGG--------GH
T ss_pred -cccC--------------------------------------ccccccCCCCCcceeeccccceecchh--------HH
Confidence 0000 124689999999999999999999999 88
Q ss_pred HHHHHhhh--cceEecccchhHHHHhhh-CCCCcccccccC----CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcC
Q psy15223 1997 ESAITAIN--KIKFFPSWGKDRLKSMIL-NRPDWTISRQRH----WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 2069 (2492)
Q Consensus 1997 ~~~~~~~~--~v~~~P~~~~~~~~~~l~-~~~DW~ISRqr~----WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 2069 (2492)
++++++++ ...+.|++.++.+.+|++ +++||||||||+ ||+|||.+..
T Consensus 183 ~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~------------------------- 237 (542)
T 3u1f_A 183 ERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPD------------------------- 237 (542)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEE-------------------------
T ss_pred HHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcC-------------------------
Confidence 99999886 478999999999999998 489999999998 9999994211
Q ss_pred cccccccchhhhcCCCccCceecccccccccccCcchhhhccCCc-------------cccCCcCceeeecccchhhhhH
Q psy15223 2070 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH-------------KKQLIFPADLYLEGSDQHRGWF 2136 (2492)
Q Consensus 2070 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~-------------~~~~~~P~Dl~~~G~D~~r~wf 2136 (2492)
.+++||||+...+.+...... .+...||+|+|++|+||++ |
T Consensus 238 ------------------------~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~--f 291 (542)
T 3u1f_A 238 ------------------------HXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILK--F 291 (542)
T ss_dssp ------------------------EEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHH--H
T ss_pred ------------------------eeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccc--c
Confidence 234444444333332221000 0012379999999999987 7
Q ss_pred HHHHHHHHHhc-CCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH
Q psy15223 2137 HSSLLTSIILN-KSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 2214 (2492)
Q Consensus 2137 ~~~l~~~~~l~-~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~ 2214 (2492)
|+.++++.++. +..|++.+++|||+. .+|+|||||+||+|+|.+++++||+|+|||||++ +++++|++|+++.+.+.
T Consensus 292 h~~~~~a~l~~~g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~ 370 (542)
T 3u1f_A 292 HAIYWPAFLLSAGLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIAR 370 (542)
T ss_dssp HHTHHHHHHHHHTCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHH
T ss_pred ccchhHHHHHhhcccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHH
Confidence 78888877654 666779999999954 7899999999999999999999999999999997 68999999999998776
Q ss_pred HH--HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhh
Q psy15223 2215 VE--TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSF 2292 (2492)
Q Consensus 2215 ~~--~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~ 2292 (2492)
.+ ..++|+|++++++....++.. ..+....+...|+|++++++++++.++++|++|+|++|++.|++|+ +++|+
T Consensus 371 ~n~~l~n~l~N~~~r~~~~~~~~~~--~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~ 446 (542)
T 3u1f_A 371 LNGELADTLGNLVMRCTSAKINVNG--EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINA 446 (542)
T ss_dssp HHHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhcccC--CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 54 567899999888765444332 2233456788999999999999999999999999999999999998 57999
Q ss_pred HHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2293 YLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2293 Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
|++..|++... ..+..++++++.++.++++.+++||+|||||+|||||+.|+-
T Consensus 447 Y~~~~~pw~l~-k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~ 499 (542)
T 3u1f_A 447 YVTDMAPWKLV-KTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499 (542)
T ss_dssp HHHHHCHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHhcCchhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCC
Confidence 99999985332 134556677888899999999999999999999999999974
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-78 Score=825.22 Aligned_cols=487 Identities=21% Similarity=0.312 Sum_probs=396.7
Q ss_pred CcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
++|+|++|||||||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++. +++|.+ |+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~---G~~p~e-------~~ 71 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPRE-------IV 71 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHH-------HH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc---CCCHHH-------HH
Confidence 47999999999999999999999 99999999999999999999999999999999999988 788765 89
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++++.++++|++||+++|| +++|+||.|++.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+-
T Consensus 72 ~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g-------- 141 (722)
T 1rqg_A 72 DEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG-------- 141 (722)
T ss_dssp HHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS--------
T ss_pred HHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc--------
Confidence 99999999999999997665 78999999999999999999999999999999999999999999976530
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
|.| .
T Consensus 142 --------------------------------tcP-------------~------------------------------- 145 (722)
T 1rqg_A 142 --------------------------------TCP-------------Y------------------------------- 145 (722)
T ss_dssp --------------------------------BCS-------------S-------------------------------
T ss_pred --------------------------------ccC-------------c-------------------------------
Confidence 111 0
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
++.+|
T Consensus 146 --------------------------------------------------------c~~~~------------------- 150 (722)
T 1rqg_A 146 --------------------------------------------------------CGAED------------------- 150 (722)
T ss_dssp --------------------------------------------------------SCCSC-------------------
T ss_pred --------------------------------------------------------cCCcc-------------------
Confidence 00000
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
..|..++.++. .+ +..++.+|+|||||+|++++.++|||+++++ ++++
T Consensus 151 ~~Gd~c~~~G~----------------------~l--~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~--------~~~~ 198 (722)
T 1rqg_A 151 QKGDQCEVCGR----------------------PL--TPEILINPRCAICGRPISFRDSAHYYIKMQD--------FAER 198 (722)
T ss_dssp CCTTTCSSSCC----------------------CC--CTTSSBSCBCTTTCCBCEEEEEEEEEECGGG--------THHH
T ss_pred CCcchhhhccc----------------------cc--ChhhccCCcccCCCcEeEEEEeccEEEEhHH--------HHHH
Confidence 00111111110 00 0112457999999999999999999999999 9999
Q ss_pred HHHhhhcceEecccchhHHHHhh-hCCCCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMI-LNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l-~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
+++++++.. +|++.++++.+|| ++++|||||||++||+|||++++ +
T Consensus 199 l~~~~~~~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~---g----------------------------- 245 (722)
T 1rqg_A 199 LKRWIEKQP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE---D----------------------------- 245 (722)
T ss_dssp HHHHHHSSC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS---S-----------------------------
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHCCCcccceeccccCccccCcccc---C-----------------------------
Confidence 999999888 5889999999999 79999999999999999997320 0
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhcc-------CCccccCCcCc------eeeecccchhhhhHHHHHHHHH
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-------GSHKKQLIFPA------DLYLEGSDQHRGWFHSSLLTSI 2144 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~-------~~~~~~~~~P~------Dl~~~G~D~~r~wf~~~l~~~~ 2144 (2492)
-+.+++|||||+.+.+.+.+. ....++.|||. ++|++|+|+++ ||..+|+++
T Consensus 246 -------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~--fH~~~wpA~ 310 (722)
T 1rqg_A 246 -------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP--FHAIFWPAF 310 (722)
T ss_dssp -------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHH--HHHTHHHHH
T ss_pred -------------CCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccc--cchhhhHHH
Confidence 023588999998887765442 11112334542 38999999998 677777776
Q ss_pred Hhc-C-----------CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCCCcccccHHHH
Q psy15223 2145 ILN-K-----------SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYSKDLSISNEIL 2211 (2492)
Q Consensus 2145 ~l~-~-----------~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~~d~~fs~~~l 2211 (2492)
++. + ..| +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++. ++++|++|+++.+
T Consensus 311 l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~ 388 (722)
T 1rqg_A 311 LMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDF 388 (722)
T ss_dssp HHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHH
T ss_pred HhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHH
Confidence 654 2 345 99999999997 9999999999999999999999999999999975 8999999999998
Q ss_pred HHHHH--HHHHHHHHH----HHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy15223 2212 NRVVE--TYRRIRNTL----RFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYC 2285 (2492)
Q Consensus 2212 ~~~~~--~~~kl~n~~----r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~ 2285 (2492)
.+..+ .+++++|++ +|+..+..+..+. ...+...|+|++++++++.+.+.++|++|+|++|++.+++|+
T Consensus 389 ~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~-----~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~ 463 (722)
T 1rqg_A 389 KVRINEELVNNLGNFVHRALTFVNRYFDGVVPE-----RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA 463 (722)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77544 456666654 4444443321111 123567899999999999999999999999999999999998
Q ss_pred HhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2286 SEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2286 ~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
+++|+|++..|+|.+.. .+..+..+++.+++++++.+++||+|||||+|||||+.|+..
T Consensus 464 --~~~n~Yi~~~kpw~~~k-~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 464 --SFGNRYFDHKQPWKTAK-EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp --HHHHHHHHTTCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHhcCchhhcC-CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 68999999999998764 244445567788899999999999999999999999999753
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-74 Score=762.66 Aligned_cols=465 Identities=20% Similarity=0.322 Sum_probs=392.2
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHH
Q psy15223 446 SINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKAR 525 (2492)
Q Consensus 446 ~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~ 525 (2492)
..|++.|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+|++. +.++.+
T Consensus 8 ~~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~------ 78 (524)
T 2x1l_A 8 HGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE---GIPAAE------ 78 (524)
T ss_dssp ---CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH------
T ss_pred cCCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc---CCCHHH------
Confidence 35778999999999999999999999999999999999999999999999999999999999987 677765
Q ss_pred HHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceec
Q psy15223 526 ALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 605 (2492)
Q Consensus 526 ~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~ 605 (2492)
+++++++.+++++++|||+. |++++|+|+.|...++++|.+|+++|+||++.++|+|||.|+|++++.|+++.
T Consensus 79 -~~~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g---- 151 (524)
T 2x1l_A 79 -LARRNSDVFQRLQEKLNISF--DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQ---- 151 (524)
T ss_dssp -HHHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEC----
T ss_pred -HHHHHHHHHHHHHHHcCCcC--CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccC----
Confidence 77889999999999999954 68899999999999999999999999999999999999999999998776410
Q ss_pred cEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHH
Q psy15223 606 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 685 (2492)
Q Consensus 606 ~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 685 (2492)
+
T Consensus 152 -------------------------------------------------------------~------------------ 152 (524)
T 2x1l_A 152 -------------------------------------------------------------P------------------ 152 (524)
T ss_dssp -------------------------------------------------------------T------------------
T ss_pred -------------------------------------------------------------C------------------
Confidence 0
Q ss_pred HcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccc
Q psy15223 686 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 765 (2492)
Q Consensus 686 ~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~ 765 (2492)
+
T Consensus 153 ---------------------------------~---------------------------------------------- 153 (524)
T 2x1l_A 153 ---------------------------------D---------------------------------------------- 153 (524)
T ss_dssp ---------------------------------T----------------------------------------------
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred ccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeecccccccc-ccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 766 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCW-RHKTPIIYRTTLQWFINMDKIPKNEKKS 844 (2492)
Q Consensus 766 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~w-R~~~pvi~r~t~QWFi~~~~~~~~~~~~ 844 (2492)
| +.|+ |||+|++++.++|||+++++
T Consensus 154 -----G-----------------------------------------~~c~~~~g~~v~~~~~~qwF~~l~~-------- 179 (524)
T 2x1l_A 154 -----G-----------------------------------------TRIATETGAPVTWTEEQTYFFRLSA-------- 179 (524)
T ss_dssp -----S-----------------------------------------CEEETTTCCBEEEEEEEEEEECGGG--------
T ss_pred -----C-----------------------------------------CccccccCCcceEEecCCeEeeHHH--------
Confidence 0 0477 99999999999999999998
Q ss_pred HHHHHHHHhhc--ceEecchhhHHHHHHH-hcCCCeeeecccc-CCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCC
Q psy15223 845 LRESAITAINK--IKFFPSWGKDRLKSMI-LNRPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGI 920 (2492)
Q Consensus 845 ~~~~~~~~i~~--v~~~P~~~~~rl~~~l-~~~~DWcISRqr~-WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~ 920 (2492)
+++++++.+++ ..+.|+..++++.+|+ ++++||||||||. ||+|||. +
T Consensus 180 ~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~--~-------------------------- 231 (524)
T 2x1l_A 180 YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD--H-------------------------- 231 (524)
T ss_dssp SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT--E--------------------------
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC--C--------------------------
Confidence 99999999974 3478999999999999 4899999999995 9999991 0
Q ss_pred ccccccCchhhcCCCccCceecCCccccccccccccchhcccCcc----ccCCcCeeeeecccccchhhHHHHHHHHHHh
Q psy15223 921 EIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK----KQLIFPADLYLEGSDQHRGWFHSSLLTSIIL 996 (2492)
Q Consensus 921 ~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~----~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~ 996 (2492)
+.+|+||||||++++++.++.+.+ +..+||+|+|++|+||++ ||++++++.+.
T Consensus 232 ---------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~ 288 (524)
T 2x1l_A 232 ---------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLM 288 (524)
T ss_dssp ---------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHH
T ss_pred ---------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHH
Confidence 135899999999998877765432 245789999999999995 88888766543
Q ss_pred -cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHH--HHHHH
Q psy15223 997 -NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIR 1072 (2492)
Q Consensus 997 -~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~ 1072 (2492)
.|..||+++++||||++ +|+|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.+..+. .++++
T Consensus 289 ~~g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 289 SAGLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp HHTCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred HCCCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47788899999999996 899999999999999999999999999999998 88999999999999876542 23355
Q ss_pred HHHHHHhhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhh
Q psy15223 1073 NTLRFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 1148 (2492)
Q Consensus 1073 n~~rf~l~~----l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~K 1148 (2492)
|+++++... ..+..+ ....+.+.|+|++++++++.+.+.++|++|+|++|++.|++|++ ++|+|++..|
T Consensus 368 n~~~r~~~~~~~~~~~~~~-----~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k 440 (524)
T 2x1l_A 368 NLAQRSLSMVAKNLGAAVP-----DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQE 440 (524)
T ss_dssp HHHHHHHHHHHHHSTTBCC-----CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCC-----CccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhcC
Confidence 555443321 221111 12245678999999999999999999999999999999999994 6899999999
Q ss_pred h-hhcccc--CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCC
Q psy15223 1149 D-RLYTTK--KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1149 d-rl~~~~--~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~ 1197 (2492)
+ +++.+. .+....++++.++.++++.++++|+|||||+|||||+.|+..
T Consensus 441 ~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 441 PWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred ChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9 454431 122334467778889999999999999999999999999753
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-73 Score=753.97 Aligned_cols=464 Identities=20% Similarity=0.325 Sum_probs=390.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
.+++.|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||+||+|||.+|++. +.++.+
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~------- 78 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE---GIPAAE------- 78 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc---CCCHHH-------
Confidence 4678999999999999999999999999999999999999999999999999999999999987 777765
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~ 1756 (2492)
++.++++.+++++++||+++ |++++|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|+++
T Consensus 79 ~~~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~------ 150 (524)
T 2x1l_A 79 LARRNSDVFQRLQEKLNISF--DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE------ 150 (524)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE------
T ss_pred HHHHHHHHHHHHHHHcCCcC--CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc------
Confidence 67888999999999999965 5788999999999999999999999999999999999999999998877641
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
T Consensus 151 -------------------------------------------------------------------------------- 150 (524)
T 2x1l_A 151 -------------------------------------------------------------------------------- 150 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
+ +
T Consensus 151 --------------------------------g----------------~------------------------------ 152 (524)
T 2x1l_A 151 --------------------------------Q----------------P------------------------------ 152 (524)
T ss_dssp --------------------------------C----------------T------------------------------
T ss_pred --------------------------------C----------------C------------------------------
Confidence 0 0
Q ss_pred cCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccccc-ccCCcEEEeecccceeecCCCCcchhHHH
Q psy15223 1917 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCW-RHKTPIIYRTTLQWFINMDKIPKNEKKSL 1995 (2492)
Q Consensus 1917 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~-R~~~pvi~~~~~QWFi~~~~~~~~~~~~~ 1995 (2492)
+| +.|+ |||+|++++.++|||+++++ +
T Consensus 153 ---~G-----------------------------------------~~c~~~~g~~v~~~~~~qwF~~l~~--------~ 180 (524)
T 2x1l_A 153 ---DG-----------------------------------------TRIATETGAPVTWTEEQTYFFRLSA--------Y 180 (524)
T ss_dssp ---TS-----------------------------------------CEEETTTCCBEEEEEEEEEEECGGG--------S
T ss_pred ---CC-----------------------------------------CccccccCCcceEEecCCeEeeHHH--------H
Confidence 00 1477 99999999999999999999 8
Q ss_pred HHHHHHhhhc--ceEecccchhHHHHhh-hCCCCcccccccC-CCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcc
Q psy15223 1996 RESAITAINK--IKFFPSWGKDRLKSMI-LNRPDWTISRQRH-WGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIE 2071 (2492)
Q Consensus 1996 k~~~~~~~~~--v~~~P~~~~~~~~~~l-~~~~DW~ISRqr~-WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 2071 (2492)
++++++.+++ ..+.|+..++++.+|+ ++++||||||||. ||+|||. +
T Consensus 181 ~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~--~--------------------------- 231 (524)
T 2x1l_A 181 TDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD--H--------------------------- 231 (524)
T ss_dssp HHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT--E---------------------------
T ss_pred HHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC--C---------------------------
Confidence 9999999974 3478999999999999 5899999999985 9999992 0
Q ss_pred cccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc----ccCCcCceeeecccchhhhhHHHHHHHHHHh-
Q psy15223 2072 IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK----KQLIFPADLYLEGSDQHRGWFHSSLLTSIIL- 2146 (2492)
Q Consensus 2072 ~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~----~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l- 2146 (2492)
+.+|+||||||++++++.++...+ ++.+||+|+|++|+||++ ||.+++++.+.
T Consensus 232 --------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~~ 289 (524)
T 2x1l_A 232 --------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLMS 289 (524)
T ss_dssp --------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHHH
T ss_pred --------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHHH
Confidence 125899999999998877654321 234689999999999995 77777766543
Q ss_pred cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH--HHHHHH
Q psy15223 2147 NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRN 2223 (2492)
Q Consensus 2147 ~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n 2223 (2492)
.+..||+++++||||++ +|+|||||+||+|+|.|++++||+|++|||+++ +++++|++|+++.+.+..+. .++|+|
T Consensus 290 ~g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n 368 (524)
T 2x1l_A 290 AGLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGN 368 (524)
T ss_dssp HTCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHH
T ss_pred CCCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 47788899999999996 899999999999999999999999999999997 78999999999999776542 334555
Q ss_pred HHHHHHhc----CCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhh
Q psy15223 2224 TLRFLLAN----TSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKD 2299 (2492)
Q Consensus 2224 ~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~ 2299 (2492)
+++++... ..+..+ ....+...|+|++++++++.+.+.++|++|+|+.|++.+++|++ ++|+|++..|+
T Consensus 369 ~~~r~~~~~~~~~~~~~~-----~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~ 441 (524)
T 2x1l_A 369 LAQRSLSMVAKNLGAAVP-----DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHHSTTBCC-----CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCC-----CccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhcCC
Confidence 54443221 221111 11235678999999999999999999999999999999999994 68999999998
Q ss_pred h-hcccc--CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2300 R-LYTTK--KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2300 ~-l~~~~--~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
+ ++... .+....++++.++.++++.+++||+|||||+|||||+.|+..
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred hhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 3 44321 122234456778889999999999999999999999999753
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-72 Score=746.26 Aligned_cols=469 Identities=17% Similarity=0.230 Sum_probs=405.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHH
Q psy15223 447 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 526 (2492)
Q Consensus 447 ~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~ 526 (2492)
.++++|+++.|+|||||.|||||++++++.|+++||+||+||+|.|++|+|+||+||+.+|++. +.+|++
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~---g~~p~~------- 92 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ---GVSPMD------- 92 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT---TCCHHH-------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc---CCCHHH-------
Confidence 4567899999999999999999999999999999999999999999999999999999999885 788877
Q ss_pred HHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceecc
Q psy15223 527 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606 (2492)
Q Consensus 527 ~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~ 606 (2492)
+++++.+.+++++++|||++| ++++|+|+.|...++++|.+|+++|+||++..+++||+.|+++|++.|+....
T Consensus 93 ~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~---- 166 (564)
T 3kfl_A 93 FTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGV---- 166 (564)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEE----
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCc----
Confidence 888899999999999999776 57899999999999999999999999999999999999999999998875100
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
+
T Consensus 167 --------------------------------------------------~----------------------------- 167 (564)
T 3kfl_A 167 --------------------------------------------------D----------------------------- 167 (564)
T ss_dssp --------------------------------------------------C-----------------------------
T ss_pred --------------------------------------------------C-----------------------------
Confidence 0
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
T Consensus 168 -------------------------------------------------------------------------------- 167 (564)
T 3kfl_A 168 -------------------------------------------------------------------------------- 167 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 767 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 846 (2492)
Q Consensus 767 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~ 846 (2492)
.+|... + .+.+||+|++++.++|||+++++ ++
T Consensus 168 --~~g~~c-------------------------~-------------~~~~~g~~~~~~~~~~~f~~l~~--------~~ 199 (564)
T 3kfl_A 168 --RDGKPC-------------------------K-------------VSLESGHVVTWVEEENYMFRLSA--------FR 199 (564)
T ss_dssp --TTSCEE-------------------------E-------------EETTTSCBCEEEEEEEEEECGGG--------GH
T ss_pred --CCCCEe-------------------------c-------------cccCCCCccEEEecceeEEEHHH--------HH
Confidence 000000 0 01268999999999999999998 99
Q ss_pred HHHHHHhhc--ceEecchhhHHHHHHHh-cCCCeeeec----cccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcC
Q psy15223 847 ESAITAINK--IKFFPSWGKDRLKSMIL-NRPDWTISR----QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 919 (2492)
Q Consensus 847 ~~~~~~i~~--v~~~P~~~~~rl~~~l~-~~~DWcISR----qr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 919 (2492)
+++++++++ ..|.|++.++++.+||+ +++|||||| |++||+|||.
T Consensus 200 ~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~---------------------------- 251 (564)
T 3kfl_A 200 ERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG---------------------------- 251 (564)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----------------------------
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC----------------------------
Confidence 999999975 45789999999999998 899999999 8899999992
Q ss_pred CccccccCchhhcCCCccCceecCCccccccccccccchhccc-Cc---c------c--cCCcCeeeeecccccchhhHH
Q psy15223 920 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-SH---K------K--QLIFPADLYLEGSDQHRGWFH 987 (2492)
Q Consensus 920 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-~~---~------~--~~~~p~Dl~~~G~D~~rgwf~ 987 (2492)
.+.+|+||||||+++|++.+++ .. + + +.+||+|+|++|+||+| ||
T Consensus 252 ---------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~--FH 308 (564)
T 3kfl_A 252 ---------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FH 308 (564)
T ss_dssp ---------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHH--HH
T ss_pred ---------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccc--hH
Confidence 1346999999999999988765 21 1 3 67899999999999999 88
Q ss_pred HHHHHHHH-hcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH
Q psy15223 988 SSLLTSII-LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 1065 (2492)
Q Consensus 988 s~l~~~~~-~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~ 1065 (2492)
+++|++++ ..|..|+++|++|||+ +.+|+|||||+||+|+|.+++++||+|++|||+++ .++++|++|+++.+.+..
T Consensus 309 ~~~wpa~L~a~g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~ 387 (564)
T 3kfl_A 309 AIYWPAFLMSAELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARL 387 (564)
T ss_dssp HTHHHHHHHHTTCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHH
Confidence 98887654 4577889999999998 79999999999999999999999999999999998 789999999999997754
Q ss_pred --HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1066 --ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1066 --~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
+.+++++|+++++++.+..++. ..+....+...|+|++++++++++++.++|++|+|++|++.+++|+ .++|+|
T Consensus 388 n~~l~~~l~N~~~R~~~~~~~~~g--~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y 463 (564)
T 3kfl_A 388 NGELADTLGNLVSRCVAPKINVNG--MWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAY 463 (564)
T ss_dssp HHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHH
Confidence 3678899999887765542221 1111234678999999999999999999999999999999999999 479999
Q ss_pred HHhhhh-hhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1144 LDILKD-RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1144 l~~~Kd-rl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
++..|+ +|+. .+..++++++.++.++++.++++|+|||||+|||||+.|+-
T Consensus 464 ~~~~kpW~l~~--~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 464 VTENAPWKLVK--MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHCHHHHTT--TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHhcCChhhhc--CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 999998 5654 24455678899999999999999999999999999999974
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-72 Score=744.82 Aligned_cols=460 Identities=20% Similarity=0.316 Sum_probs=387.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHH
Q psy15223 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 527 (2492)
Q Consensus 448 ~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~ 527 (2492)
++++|+++.|+|||||.|||||++++++.|+++||+||+||+|.|++|||+||+||+.+|++. +.+|.+ +
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~---g~~~~~-------~ 92 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE---GITPRD-------L 92 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH-------H
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc---CCCHHH-------H
Confidence 457899999999999999999999999999999999999999999999999999999999887 788877 7
Q ss_pred HHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccE
Q psy15223 528 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 607 (2492)
Q Consensus 528 a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s 607 (2492)
++++.+.+++++++|||+. |+.++|+++.|...++++|.+|+++|+||++..+++||++|+++++++|++..
T Consensus 93 ~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~------ 164 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSN--DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR------ 164 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC------
T ss_pred HHHHHHHHHHHHHHcCCCC--CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC------
Confidence 8889999999999999965 57889999999999999999999999999999999999999999998776410
Q ss_pred EEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 608 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 608 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccccc
Q psy15223 688 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 767 (2492)
Q Consensus 688 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~v 767 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 768 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 847 (2492)
Q Consensus 768 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~ 847 (2492)
++|. +|+|||+|++++.++|||+++++ +++
T Consensus 165 -~~g~-----------------------------------------~c~~~g~~~e~~~~~~~f~~l~~--------~~~ 194 (536)
T 4dlp_A 165 -ADGV-----------------------------------------RYGPQGTPVEWVEEESYFFRLSA--------YQD 194 (536)
T ss_dssp -TTSC-----------------------------------------EECTTSSBCEEEEEEEEEECGGG--------GHH
T ss_pred -CCCC-----------------------------------------cccCCCCcceEEeccceEEecHH--------HHH
Confidence 0010 48899999999999999999998 899
Q ss_pred HHHHHhhcc--eEecchhhHHHHHHHh-cCCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCccc
Q psy15223 848 SAITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 923 (2492)
Q Consensus 848 ~~~~~i~~v--~~~P~~~~~rl~~~l~-~~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w 923 (2492)
++++.+++. .+.|++.++++.+|++ +++|||||||| +||+|||.
T Consensus 195 ~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~-------------------------------- 242 (536)
T 4dlp_A 195 KLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG-------------------------------- 242 (536)
T ss_dssp HHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT--------------------------------
T ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC--------------------------------
Confidence 999999864 4679999999999998 79999999997 69999992
Q ss_pred cccCchhhcCCCccCceecCCccccccccccccchhcccCc---cccCCcCeeeeecccccchhhHHHHHHHHHH-hcCC
Q psy15223 924 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKS 999 (2492)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~-~~~~ 999 (2492)
.+++|+||||||+++|++.+++.. +++.+||+|++++|+||++ ||.+++++.+ ..|.
T Consensus 243 -----------------~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~--fh~~~~~a~l~a~g~ 303 (536)
T 4dlp_A 243 -----------------DEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL 303 (536)
T ss_dssp -----------------CTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHH--HHHTHHHHHHHHTTC
T ss_pred -----------------CCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHH--HHHHHHHHHHHHCCC
Confidence 024699999999999998887542 2367899999999999999 7777776554 3467
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHH--HHHHHHHHHHH
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV--ETYRRIRNTLR 1076 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~--~~~~kl~n~~r 1076 (2492)
.||++|++||||++ +|+|||||+||+|+|.+++++||+|++|||+++ .++.+|++|+++.+.+.. +.+++++|+++
T Consensus 304 ~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 304 PLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp CCCSCEEEECCEEC-------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEeeeeEee-CCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999998 789999999999887654 34566777654
Q ss_pred H----HhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhh-h
Q psy15223 1077 F----LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDR-L 1151 (2492)
Q Consensus 1077 f----~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdr-l 1151 (2492)
+ +..+..++.|. ...+.+.|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|++ +
T Consensus 383 R~~~~~~~~~~~~~p~-----~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l 455 (536)
T 4dlp_A 383 RSLSMIAKNCEGKVPQ-----PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWAL 455 (536)
T ss_dssp HHHHHHHHHSTTBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhcCCCCCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhh
Confidence 4 44454444332 234678999999999999999999999999999999999998 6899999999984 3
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1152 YTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1152 ~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.. .+..++.+++.++.++++.++++|+|||||+|||||+.|+-
T Consensus 456 ~~--~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~ 498 (536)
T 4dlp_A 456 RK--TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498 (536)
T ss_dssp HH--HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTC
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC
Confidence 32 24455677899999999999999999999999999999974
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-71 Score=739.74 Aligned_cols=469 Identities=17% Similarity=0.226 Sum_probs=403.3
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHH
Q psy15223 1597 INRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARA 1676 (2492)
Q Consensus 1597 ~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~ 1676 (2492)
.++++|+|+.|+|||||.|||||++++++.|+++||+||+||+|+|++|+|+||+||+.+|++. +.+|.+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~---g~~p~~------- 92 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ---GVSPMD------- 92 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT---TCCHHH-------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc---CCCHHH-------
Confidence 3567899999999999999999999999999999999999999999999999999999999886 788876
Q ss_pred HHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecc
Q psy15223 1677 LAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756 (2492)
Q Consensus 1677 ~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~ 1756 (2492)
+++++.+.+++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.|+....
T Consensus 93 ~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~---- 166 (564)
T 3kfl_A 93 FTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGV---- 166 (564)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEE----
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCc----
Confidence 788899999999999999876 57899999999999999999999999999999999999999999998775100
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
++
T Consensus 167 -------------------------------------------------~~----------------------------- 168 (564)
T 3kfl_A 167 -------------------------------------------------DR----------------------------- 168 (564)
T ss_dssp -------------------------------------------------CT-----------------------------
T ss_pred -------------------------------------------------CC-----------------------------
Confidence 00
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
T Consensus 169 -------------------------------------------------------------------------------- 168 (564)
T 3kfl_A 169 -------------------------------------------------------------------------------- 168 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHH
Q psy15223 1917 VMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLR 1996 (2492)
Q Consensus 1917 vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k 1996 (2492)
+|..+ + .+.+||+|++++.++|||+++++ ++
T Consensus 169 ---~g~~c---~-----------------------------------~~~~~g~~~~~~~~~~~f~~l~~--------~~ 199 (564)
T 3kfl_A 169 ---DGKPC---K-----------------------------------VSLESGHVVTWVEEENYMFRLSA--------FR 199 (564)
T ss_dssp ---TSCEE---E-----------------------------------EETTTSCBCEEEEEEEEEECGGG--------GH
T ss_pred ---CCCEe---c-----------------------------------cccCCCCccEEEecceeEEEHHH--------HH
Confidence 00000 0 01268999999999999999999 89
Q ss_pred HHHHHhhhc--ceEecccchhHHHHhhh-CCCCccccc----ccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcC
Q psy15223 1997 ESAITAINK--IKFFPSWGKDRLKSMIL-NRPDWTISR----QRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNG 2069 (2492)
Q Consensus 1997 ~~~~~~~~~--v~~~P~~~~~~~~~~l~-~~~DW~ISR----qr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 2069 (2492)
+.+++++++ ..|.|++.++++.+||+ +++|||||| |++||+|||.
T Consensus 200 ~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~---------------------------- 251 (564)
T 3kfl_A 200 ERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG---------------------------- 251 (564)
T ss_dssp HHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----------------------------
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC----------------------------
Confidence 999999974 45789999999999998 899999999 8899999992
Q ss_pred cccccccchhhhcCCCccCceecccccccccccCcchhhhccC-C---cc------c--cCCcCceeeecccchhhhhHH
Q psy15223 2070 IEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-S---HK------K--QLIFPADLYLEGSDQHRGWFH 2137 (2492)
Q Consensus 2070 ~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-~---~~------~--~~~~P~Dl~~~G~D~~r~wf~ 2137 (2492)
.+.+|+||||||+++|++.+.. . .+ + +.+||+|++++|+||++ ||
T Consensus 252 ---------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~--FH 308 (564)
T 3kfl_A 252 ---------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK--FH 308 (564)
T ss_dssp ---------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHH--HH
T ss_pred ---------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccc--hH
Confidence 1346999999999999988754 1 11 3 56799999999999999 88
Q ss_pred HHHHHHHHh-cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHH
Q psy15223 2138 SSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 2215 (2492)
Q Consensus 2138 ~~l~~~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~ 2215 (2492)
..+|+++++ .+..|+++|++|||+ +.+|+|||||+||+|+|.+++++||+|++|||+++ .++++|++|+++.+.+..
T Consensus 309 ~~~wpa~L~a~g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~ 387 (564)
T 3kfl_A 309 AIYWPAFLMSAELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARL 387 (564)
T ss_dssp HTHHHHHHHHTTCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHH
Confidence 888876653 577889999999998 69999999999999999999999999999999998 789999999999987754
Q ss_pred H--HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2216 E--TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2216 ~--~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
+ .+++|+|+++++...+..+.. ..+....+...|+|++++++++++.+.++|++|+|++|++.+++|+ .++|+|
T Consensus 388 n~~l~~~l~N~~~R~~~~~~~~~g--~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y 463 (564)
T 3kfl_A 388 NGELADTLGNLVSRCVAPKINVNG--MWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAY 463 (564)
T ss_dssp HHTTTTTHHHHHHHHHCTTTSTTS--BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHH
Confidence 3 678899999887665442221 1111234578999999999999999999999999999999999999 479999
Q ss_pred HHhhhh-hhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2294 LDILKD-RLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2294 le~~K~-~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++..|+ +++. .+..+..+++.++.++++.++++|+|||||+|||||+.|+.
T Consensus 464 ~~~~kpW~l~~--~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 464 VTENAPWKLVK--MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHCHHHHTT--TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHhcCChhhhc--CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 999998 5543 34455667889999999999999999999999999999975
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-72 Score=743.76 Aligned_cols=456 Identities=22% Similarity=0.364 Sum_probs=358.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+++.|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+|++. +.+|.+ ++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 73 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL---GISPKE-------LV 73 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHS---SSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHc---CCCHHH-------HH
Confidence 57899999999999999999999999999999999999999999999999999999999885 677766 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++++.++++|++||| +||++|+|+|+.|...++++|.+|+++|+||++.++++|||.|+|++++.|++
T Consensus 74 ~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~--------- 142 (497)
T 2csx_A 74 DRNAERFKKLWEFLKI--EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA--------- 142 (497)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------
T ss_pred HHHHHHHHHHHHHhCC--cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc---------
Confidence 8999999999999999 56678999999999999999999999999999999999999999887654321
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+
T Consensus 143 ------------------------------~------------------------------------------------- 143 (497)
T 2csx_A 143 ------------------------------E------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.++|||||.|++++.++|||+++++ ++++
T Consensus 144 -------------------------------------------~~~c~~~~~~~~~~~~~~wf~~l~~--------~~~~ 172 (497)
T 2csx_A 144 -------------------------------------------DHTCPIHQKKCEYIKEPSYFFRLSK--------YQDK 172 (497)
T ss_dssp ---------------------------------------------------------CCEEEEECTTS--------SHHH
T ss_pred -------------------------------------------CCCCCCCCCCCeEEecCceEEEcHH--------HHHH
Confidence 0249999999999999999999999 8999
Q ss_pred HHHHhhcc--eEecchhhHHHHHHHh-cCCCeeeec--cc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 849 AITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 849 ~~~~i~~v--~~~P~~~~~rl~~~l~-~~~DWcISR--qr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++.+++. .+.|+..++++.+|++ +++|||||| || .||+|||..
T Consensus 173 l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~------------------------------ 222 (497)
T 2csx_A 173 LLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD------------------------------ 222 (497)
T ss_dssp HHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE------------------------------
T ss_pred HHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC------------------------------
Confidence 99999863 4679999999999997 789999999 77 599999930
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHH-hcCCCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKSAP 1001 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~-~~~~~p 1001 (2492)
+.+++||||||++++.+++.... ..+||+|+|++|+||++ ||..++++.+ ..|..|
T Consensus 223 -------------------~~~~i~vW~ds~~~~~s~~~~~~--~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~ 279 (497)
T 2csx_A 223 -------------------PEHTIYVWFDALFNYISALEDKV--EIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYEL 279 (497)
T ss_dssp -------------------EEEEECSHHHHHTHHHHTTTTTH--HHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCC
T ss_pred -------------------CCceEEEecccchhhcccCCCcc--hhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCC
Confidence 13578999999999887773211 14569999999999999 5566655442 337789
Q ss_pred ceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHH--HHHHHHHHHHH
Q psy15223 1002 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLRFL 1078 (2492)
Q Consensus 1002 ~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~rf~ 1078 (2492)
|+++++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.+..+. ..+++|++.++
T Consensus 280 ~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~ 358 (497)
T 2csx_A 280 PKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRV 358 (497)
T ss_dssp CSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 999999999999999999999999999999997 78999999999998775432 23344554433
Q ss_pred hhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCCh
Q psy15223 1079 LANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNS 1158 (2492)
Q Consensus 1079 l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~ 1158 (2492)
...+.++... .++ ...|+|++++++++.+.+.++|++|+|++|++.|++|+ .++|+|++..|++......+.
T Consensus 359 ~~~~~~~~~~--~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~ 430 (497)
T 2csx_A 359 VNMAHKFLGG--EVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKK 430 (497)
T ss_dssp HHHHHHHSTT--CBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCH
T ss_pred HHHHHHhcCC--CCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccH
Confidence 3222111001 111 45789999999999999999999999999999999999 469999999998744322233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCC
Q psy15223 1159 HARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1159 ~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~ 1197 (2492)
.+.+++..+++++++.++++|+|||||+|||||+.|+..
T Consensus 431 ~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 431 EELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 344577888999999999999999999999999999753
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-72 Score=743.22 Aligned_cols=456 Identities=21% Similarity=0.316 Sum_probs=384.1
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+++.|||||||.||||||++++++|+++||+||+||+|+|++|||+||+|||.+|++. +.++.+ ++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 71 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKA-------FV 71 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc---CCCHHH-------HH
Confidence 46899999999999999999999999999999999999999999999999999999999987 778866 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
+++++.++++|++||++. |.+++|+|+.|...++++|.+|+++|+||++.++++|||.|+|++++.|+.
T Consensus 72 ~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--------- 140 (500)
T 2d5b_A 72 DRVSGRFKRAWDLLGIAY--DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--------- 140 (500)
T ss_dssp HHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---------
T ss_pred HHHHHHHHHHHHHhCCcC--CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---------
Confidence 889999999999999954 568999999999999999999999999999999999999999887653221
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
+
T Consensus 141 ------------------------------~------------------------------------------------- 141 (500)
T 2d5b_A 141 ------------------------------E------------------------------------------------- 141 (500)
T ss_dssp ------------------------------T-------------------------------------------------
T ss_pred ------------------------------C-------------------------------------------------
Confidence 0
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
++|||||+|++++.++|||+++++ ++++
T Consensus 142 --------------------------------------------g~c~~~~~~v~~~~~~~wf~~l~~--------~~~~ 169 (500)
T 2d5b_A 142 --------------------------------------------GLCPIHGRPVERRKEGNYFFRMEK--------YRPW 169 (500)
T ss_dssp --------------------------------------------TBCTTTCSBCEEEEEEEEEECGGG--------GHHH
T ss_pred --------------------------------------------CcCCCCCCeeeEEecCceEEEcHH--------HHHH
Confidence 139999999999999999999998 9999
Q ss_pred HHHHhhc-c-eEecchhhHHHHHHHh-cCCCeeeec--cc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 849 AITAINK-I-KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 849 ~~~~i~~-v-~~~P~~~~~rl~~~l~-~~~DWcISR--qr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++.+++ . .+.|+..++++.+|++ +++|||||| || .||+|||. +
T Consensus 170 l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~---------------------------- 219 (500)
T 2d5b_A 170 LQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D---------------------------- 219 (500)
T ss_dssp HHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E----------------------------
T ss_pred HHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C----------------------------
Confidence 9999986 3 3579999999999996 579999999 88 69999993 0
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCcc--ccCCcCeeeeecccccchhhHHHHHHHHHH-hcCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--KQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKS 999 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~-~~~~ 999 (2492)
+++|+||||||+++|++.+++..+ +..+||+|+|++|+||++ ||.+++++.+ ..|.
T Consensus 220 -------------------~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~~~~~g~ 278 (500)
T 2d5b_A 220 -------------------ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI 278 (500)
T ss_dssp -------------------EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHH--HHHTHHHHHHHHHTC
T ss_pred -------------------CCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhh--hHHHHHHHHHHHcCC
Confidence 235899999999999887765432 245689999999999999 6666655443 3377
Q ss_pred CCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHHH--HHHHHHHHH
Q psy15223 1000 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLR 1076 (2492)
Q Consensus 1000 ~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~r 1076 (2492)
.||+++++||||++++|+|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.+..+. .++++|+..
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~ 358 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQ 358 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988999999999999999999999999999999997 78999999999999776542 233445443
Q ss_pred HHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhcccc
Q psy15223 1077 FLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK 1155 (2492)
Q Consensus 1077 f~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~ 1155 (2492)
++...+.+ ++. .++. ..++|++++++++.+.+.++|++|+|++|++.|++|+ .++|+|++..|++.....
T Consensus 359 r~~~~~~~~~~~---~~~~----~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~ 429 (500)
T 2d5b_A 359 RTRAMLFRFAEG---RIPE----PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKK 429 (500)
T ss_dssp HHHHHHHHHSTT---BCCC----CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCC---CCCc----hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccC
Confidence 33221111 110 1111 1147899999999999999999999999999999999 468999999999754422
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCC
Q psy15223 1156 KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1156 ~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~ 1197 (2492)
+..+.+++..+++++++.++++|+|||||+|||||+.|+..
T Consensus 430 -~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 430 -EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 22334578888999999999999999999999999999753
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-71 Score=735.42 Aligned_cols=461 Identities=20% Similarity=0.317 Sum_probs=384.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q psy15223 1598 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARAL 1677 (2492)
Q Consensus 1598 ~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~ 1677 (2492)
++++|+++.|+|||||.|||||+++++++|+++||+||+||+|.|++|||+||.||+.+|++. +.+|.+ +
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~---g~~~~~-------~ 92 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE---GITPRD-------L 92 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH---TSCHHH-------H
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc---CCCHHH-------H
Confidence 457899999999999999999999999999999999999999999999999999999999887 788876 7
Q ss_pred HHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecce
Q psy15223 1678 AYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFS 1757 (2492)
Q Consensus 1678 ~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~ 1757 (2492)
+.++.+.+++++++||++. +.+++|+++.|...++++|.+|+++|+||++..+++||+.|+++++++|++..
T Consensus 93 ~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~------ 164 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSN--DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR------ 164 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC------
T ss_pred HHHHHHHHHHHHHHcCCCC--CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC------
Confidence 8889999999999999965 57889999999999999999999999999999999999999999988776410
Q ss_pred EEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHc
Q psy15223 1758 IYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 1837 (2492)
Q Consensus 1758 ~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 1837 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCccccc
Q psy15223 1838 GFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPV 1917 (2492)
Q Consensus 1838 ~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~v 1917 (2492)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHH
Q psy15223 1918 MDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRE 1997 (2492)
Q Consensus 1918 d~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~ 1997 (2492)
++| .+|+|||+|++++.++|||+++++ +++
T Consensus 165 -~~g-----------------------------------------~~c~~~g~~~e~~~~~~~f~~l~~--------~~~ 194 (536)
T 4dlp_A 165 -ADG-----------------------------------------VRYGPQGTPVEWVEEESYFFRLSA--------YQD 194 (536)
T ss_dssp -TTS-----------------------------------------CEECTTSSBCEEEEEEEEEECGGG--------GHH
T ss_pred -CCC-----------------------------------------CcccCCCCcceEEeccceEEecHH--------HHH
Confidence 001 048899999999999999999999 899
Q ss_pred HHHHhhhcc--eEecccchhHHHHhhh-CCCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCcccc
Q psy15223 1998 SAITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIW 2073 (2492)
Q Consensus 1998 ~~~~~~~~v--~~~P~~~~~~~~~~l~-~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w 2073 (2492)
.+++++++. .+.|++.++++.+|++ +++|||||||| +||+|||.
T Consensus 195 ~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~-------------------------------- 242 (536)
T 4dlp_A 195 KLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG-------------------------------- 242 (536)
T ss_dssp HHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT--------------------------------
T ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC--------------------------------
Confidence 999999864 4689999999999998 89999999996 69999992
Q ss_pred cccchhhhcCCCccCceecccccccccccCcchhhhccCCc---cccCCcCceeeecccchhhhhHHHHHHHHHHh-cCC
Q psy15223 2074 QNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSH---KKQLIFPADLYLEGSDQHRGWFHSSLLTSIIL-NKS 2149 (2492)
Q Consensus 2074 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~---~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~ 2149 (2492)
.+++|+||||||+++|++.+.... .++.+||+|++++|+||++ ||..++++.++ .+.
T Consensus 243 -----------------~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~--fh~~~~~a~l~a~g~ 303 (536)
T 4dlp_A 243 -----------------DEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISR--FHAVYWPAFLMSAQL 303 (536)
T ss_dssp -----------------CTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHH--HHHTHHHHHHHHTTC
T ss_pred -----------------CCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHH--HHHHHHHHHHHHCCC
Confidence 024699999999999998886432 2356799999999999999 66777665543 467
Q ss_pred ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH--HHHHHHHHHH
Q psy15223 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE--TYRRIRNTLR 2226 (2492)
Q Consensus 2150 ~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~--~~~kl~n~~r 2226 (2492)
.||++|++||||++ +|+|||||+||+|+|.+++++||+|++|||+++ .++++|++|+++.+.+..+ .+++++|+++
T Consensus 304 ~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 304 PLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp CCCSCEEEECCEEC-------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEeeeeEee-CCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999998 7899999999998876543 4566777654
Q ss_pred H----HHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhc
Q psy15223 2227 F----LLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLY 2302 (2492)
Q Consensus 2227 ~----~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~ 2302 (2492)
+ +..+..++.|. ...+...|+|++++++++.+.+.++|++|+|++|++.+++|+ +++|+|++..|++..
T Consensus 383 R~~~~~~~~~~~~~p~-----~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l 455 (536)
T 4dlp_A 383 RSLSMIAKNCEGKVPQ-----PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWAL 455 (536)
T ss_dssp HHHHHHHHHSTTBCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhcCCCCCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhh
Confidence 4 33444443332 234578999999999999999999999999999999999998 689999999988322
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2303 TTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2303 ~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
.. .+..++.+++.++.++++.+++||+|||||+|||||+.|+-
T Consensus 456 ~~-~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~ 498 (536)
T 4dlp_A 456 RK-TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498 (536)
T ss_dssp HH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTC
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC
Confidence 21 23445667889999999999999999999999999999975
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-71 Score=736.14 Aligned_cols=456 Identities=22% Similarity=0.364 Sum_probs=356.6
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+++.|||||||.|||||+++++++|+++||+||+||+|+|++||||||+|||.+|++. +.++.+ ++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 73 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL---GISPKE-------LV 73 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHS---SSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHc---CCCHHH-------HH
Confidence 57899999999999999999999999999999999999999999999999999999999886 777765 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++++.++++|++||+ +||.+++|+||.|.+.++++|.+|+++|+||++.++++|||.|+|++++.|++
T Consensus 74 ~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~--------- 142 (497)
T 2csx_A 74 DRNAERFKKLWEFLKI--EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA--------- 142 (497)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------
T ss_pred HHHHHHHHHHHHHhCC--cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc---------
Confidence 8999999999999999 45678999999999999999999999999999999999999999887653321
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+
T Consensus 143 ------------------------------~------------------------------------------------- 143 (497)
T 2csx_A 143 ------------------------------E------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
.+.|||||.|++.+.++|||+++++ ++++
T Consensus 144 -------------------------------------------~~~c~~~~~~~~~~~~~~wf~~l~~--------~~~~ 172 (497)
T 2csx_A 144 -------------------------------------------DHTCPIHQKKCEYIKEPSYFFRLSK--------YQDK 172 (497)
T ss_dssp ---------------------------------------------------------CCEEEEECTTS--------SHHH
T ss_pred -------------------------------------------CCCCCCCCCCCeEEecCceEEEcHH--------HHHH
Confidence 0248999999999999999999999 8899
Q ss_pred HHHhhhcc--eEecccchhHHHHhhh-CCCCccccc--cc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1999 AITAINKI--KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1999 ~~~~~~~v--~~~P~~~~~~~~~~l~-~~~DW~ISR--qr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++.+++. .+.|+..++++.+|++ +++|||||| || +||+|||..
T Consensus 173 l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~------------------------------ 222 (497)
T 2csx_A 173 LLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD------------------------------ 222 (497)
T ss_dssp HHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE------------------------------
T ss_pred HHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC------------------------------
Confidence 99998753 4678888999999997 789999999 77 699999931
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHH-hcCCcc
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKSAP 2151 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~-l~~~~p 2151 (2492)
+++++||||||++.+.+.+.... +.+||+|+|++|+||++ ||..++++.+ ..|..|
T Consensus 223 -------------------~~~~i~vW~ds~~~~~s~~~~~~--~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~ 279 (497)
T 2csx_A 223 -------------------PEHTIYVWFDALFNYISALEDKV--EIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYEL 279 (497)
T ss_dssp -------------------EEEEECSHHHHHTHHHHTTTTTH--HHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCC
T ss_pred -------------------CCceEEEecccchhhcccCCCcc--hhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCC
Confidence 13578999999999888773211 13469999999999999 5555554443 237789
Q ss_pred ccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH--HHHHHHHHHHH
Q psy15223 2152 YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLRFL 2228 (2492)
Q Consensus 2152 fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~r~~ 2228 (2492)
|+++++||||++ +|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.+..+. .++++|++.++
T Consensus 280 ~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~ 358 (497)
T 2csx_A 280 PKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRV 358 (497)
T ss_dssp CSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 999999999999999999999999999999997 78999999999998775432 23445554433
Q ss_pred HhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCCh
Q psy15223 2229 LANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNS 2308 (2492)
Q Consensus 2229 ~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~ 2308 (2492)
...+.++... ..+ ...|+|++++++++.+.+.++|++|+|+.|++.+++|+ .++|+|++..|++......+.
T Consensus 359 ~~~~~~~~~~--~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~ 430 (497)
T 2csx_A 359 VNMAHKFLGG--EVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKK 430 (497)
T ss_dssp HHHHHHHSTT--CBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCH
T ss_pred HHHHHHhcCC--CCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccH
Confidence 3222111101 011 34689999999999999999999999999999999999 479999999998644322233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2309 HARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2309 ~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
...+++..+++++++.++++|+|||||+|||||+.|+..
T Consensus 431 ~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 431 EELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 345567888999999999999999999999999999753
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-71 Score=740.49 Aligned_cols=487 Identities=19% Similarity=0.264 Sum_probs=392.4
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 524 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~ 524 (2492)
.+.++++|++++|||||||.|||||+++++++|+++||+||+||+|.|++|||+||+||+.+|++. ++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~----- 84 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQ----- 84 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHH-----
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh---CCCHHH-----
Confidence 466889999999999999999999999999999999999999999999999999999999999986 788877
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccccccccee
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY 604 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~ 604 (2492)
+++++.+.++++|++||| +|+++|+|+++.|...++++|.+|+++|+||++..+++||+.|+|+|+|.+|+- .
T Consensus 85 --~~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g---~ 157 (560)
T 3h99_A 85 --MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKG---T 157 (560)
T ss_dssp --HHHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEE---E
T ss_pred --HHHHHHHHHHHHHHHcCC--CCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCC---C
Confidence 677788999999999999 567899999999999999999999999999999999999999999999987750 0
Q ss_pred ccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHH
Q psy15223 605 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 684 (2492)
Q Consensus 605 ~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 684 (2492)
. |.
T Consensus 158 c--------------------------------------------------p~--------------------------- 160 (560)
T 3h99_A 158 C--------------------------------------------------PK--------------------------- 160 (560)
T ss_dssp C--------------------------------------------------TT---------------------------
T ss_pred C--------------------------------------------------CC---------------------------
Confidence 0 00
Q ss_pred HHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcc
Q psy15223 685 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 764 (2492)
Q Consensus 685 ~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~ 764 (2492)
+|.
T Consensus 161 ------------------------------------------------------------c~~----------------- 163 (560)
T 3h99_A 161 ------------------------------------------------------------CKS----------------- 163 (560)
T ss_dssp ------------------------------------------------------------TCC-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
Confidence 000
Q ss_pred cccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 765 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 844 (2492)
Q Consensus 765 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~ 844 (2492)
.++.|...+.++.+ +. ..+...|+|+|||++++++.++|||+++++
T Consensus 164 --~~~~gd~ce~cg~~----------------------~~--~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~-------- 209 (560)
T 3h99_A 164 --PDQYGDNCEVCGAT----------------------YS--PTELIEPKSVVSGATPVMRDSEHFFFDLPS-------- 209 (560)
T ss_dssp --SSEETTBCTTTCCB----------------------CC--GGGCEEEEETTTCCCCEEEEEEEEEECGGG--------
T ss_pred --cccccchhhhcccc----------------------CC--hhhhcCCccccCCCCceEEecceEEEEHHH--------
Confidence 00001111111100 00 001123899999999999999999999998
Q ss_pred HHHHHHHHhhcceEecchhhHHHHHHHh-cCCCeeeeccc-cCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 845 LRESAITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 845 ~~~~~~~~i~~v~~~P~~~~~rl~~~l~-~~~DWcISRqr-~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
+++.+++.+++. ++|+..++.+.+|++ +++|||||||+ +||+|||.
T Consensus 210 ~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~------------------------------- 257 (560)
T 3h99_A 210 FSEMLQAWTRSG-ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN------------------------------- 257 (560)
T ss_dssp GHHHHHHHHHTS-CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT-------------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC-------------------------------
Confidence 899999999885 457777999999999 89999999999 89999993
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcc-c------CccccCCcCee-----eeecccccchhhHHHHH
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR-G------SHKKQLIFPAD-----LYLEGSDQHRGWFHSSL 990 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~-~------~~~~~~~~p~D-----l~~~G~D~~rgwf~s~l 990 (2492)
.+.+|+|||||+.+.+.+.+. . ...+..+||+| +++.|+||++ ||..+
T Consensus 258 ------------------~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~--fh~~~ 317 (560)
T 3h99_A 258 ------------------APGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVY--FLSLF 317 (560)
T ss_dssp ------------------CTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHH--HHHTH
T ss_pred ------------------CCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccch--hHHHH
Confidence 023589999999998877652 1 12235689999 9999999998 55666
Q ss_pred HHHHHh--cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhcc-Ccc-cccccCHHHHHHH--
Q psy15223 991 LTSIIL--NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYS-KDLSISNEILNRV-- 1064 (2492)
Q Consensus 991 ~~~~~~--~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~-~~~-~d~~fs~~~l~~~-- 1064 (2492)
+++++. ....| ++|++|||+++ +|+|||||+||+|+|.+++++||+|++|||+++. +.. +|++|+++.+...
T Consensus 318 ~~a~l~~~g~~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 318 WPAMLEGSNFRKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp HHHHHHHTTBCCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 654433 33444 99999999997 9999999999999999999999999999999974 455 7999999987653
Q ss_pred HHHHHHHHHHHHHHhhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhH
Q psy15223 1065 VETYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 1143 (2492)
Q Consensus 1065 ~~~~~kl~n~~rf~l~~l~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Y 1143 (2492)
.+..++++|++.++++.+.. ++.. ++ ....|+|++++++++++.+.++|++|+|++|++.+++|+ +++|+|
T Consensus 396 ~~l~~~l~n~~~R~~~~~~~~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Y 467 (560)
T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGV---LA---SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRY 467 (560)
T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTB---CC---SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CC---CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHH
Confidence 34556677776544432211 1111 11 135799999999999999999999999999999999998 679999
Q ss_pred HHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccC
Q psy15223 1144 LDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1144 l~~~Kdrl~~~~-~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
++..|+|..... .+..++.+++.+++++++.+++||+|||||+|||||+.|+-
T Consensus 468 i~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 468 VDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 999998755432 34456677888999999999999999999999999999963
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-71 Score=739.95 Aligned_cols=487 Identities=19% Similarity=0.261 Sum_probs=390.7
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHH
Q psy15223 1595 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 1674 (2492)
Q Consensus 1595 ~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~ 1674 (2492)
.+.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||+||+||+.+|++. ++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~----- 84 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQ----- 84 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHH-----
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh---CCCHHH-----
Confidence 456789999999999999999999999999999999999999999999999999999999999987 788876
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeee
Q psy15223 1675 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKY 1754 (2492)
Q Consensus 1675 ~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~ 1754 (2492)
++.++.+.++++|++||+ +|+++|.|+++.|.+.++++|.+|+++|+||++...++||+.|+|+|+|.+|+- .
T Consensus 85 --~~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g---~ 157 (560)
T 3h99_A 85 --MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKG---T 157 (560)
T ss_dssp --HHHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEE---E
T ss_pred --HHHHHHHHHHHHHHHcCC--CCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCC---C
Confidence 677888999999999999 567899999999999999999999999999999999999999999999987740 0
Q ss_pred cceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHH
Q psy15223 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 1834 (2492)
Q Consensus 1755 ~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 1834 (2492)
.|.
T Consensus 158 --------------------------------------------------cp~--------------------------- 160 (560)
T 3h99_A 158 --------------------------------------------------CPK--------------------------- 160 (560)
T ss_dssp --------------------------------------------------CTT---------------------------
T ss_pred --------------------------------------------------CCC---------------------------
Confidence 000
Q ss_pred HHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcc
Q psy15223 1835 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 1914 (2492)
Q Consensus 1835 ~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~ 1914 (2492)
+|.
T Consensus 161 ------------------------------------------------------------c~~----------------- 163 (560)
T 3h99_A 161 ------------------------------------------------------------CKS----------------- 163 (560)
T ss_dssp ------------------------------------------------------------TCC-----------------
T ss_pred ------------------------------------------------------------CCC-----------------
Confidence 000
Q ss_pred cccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHH
Q psy15223 1915 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKS 1994 (2492)
Q Consensus 1915 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~ 1994 (2492)
.+..|..++.|+.+- ...+...|+|+|||++++++.++|||+++++
T Consensus 164 --~~~~gd~ce~cg~~~------------------------~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~-------- 209 (560)
T 3h99_A 164 --PDQYGDNCEVCGATY------------------------SPTELIEPKSVVSGATPVMRDSEHFFFDLPS-------- 209 (560)
T ss_dssp --SSEETTBCTTTCCBC------------------------CGGGCEEEEETTTCCCCEEEEEEEEEECGGG--------
T ss_pred --cccccchhhhccccC------------------------ChhhhcCCccccCCCCceEEecceEEEEHHH--------
Confidence 001111122222110 0011123899999999999999999999999
Q ss_pred HHHHHHHhhhcceEecccchhHHHHhhh-CCCCccccccc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1995 LRESAITAINKIKFFPSWGKDRLKSMIL-NRPDWTISRQR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1995 ~k~~~~~~~~~v~~~P~~~~~~~~~~l~-~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++.+++++++. ++|+..++.+.+|++ +++|||||||+ +||+|||..
T Consensus 210 ~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~------------------------------ 258 (560)
T 3h99_A 210 FSEMLQAWTRSG-ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNA------------------------------ 258 (560)
T ss_dssp GHHHHHHHHHTS-CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTC------------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCC------------------------------
Confidence 889999999874 467778999999999 89999999999 899999920
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccC-------CccccCCcCce-----eeecccchhhhhHHHHH
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRG-------SHKKQLIFPAD-----LYLEGSDQHRGWFHSSL 2140 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~-------~~~~~~~~P~D-----l~~~G~D~~r~wf~~~l 2140 (2492)
+.+|+|||||+.+.|++.+.. ...++.+||.| +++.|+||++ ||..+
T Consensus 259 -------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~--fh~~~ 317 (560)
T 3h99_A 259 -------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVY--FLSLF 317 (560)
T ss_dssp -------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHH--HHHTH
T ss_pred -------------------CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccch--hHHHH
Confidence 235899999999988776521 12235568999 9999999998 45555
Q ss_pred HHHHHh--cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhcc-CCC-CcccccHHHHHHH--
Q psy15223 2141 LTSIIL--NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAST-DYS-KDLSISNEILNRV-- 2214 (2492)
Q Consensus 2141 ~~~~~l--~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~-~~~-~d~~fs~~~l~~~-- 2214 (2492)
++++++ ....| ++|++||||++ +|+|||||+||+|+|.+++++||+|++|||+++. +.. +|++|+++.+...
T Consensus 318 ~~a~l~~~g~~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 318 WPAMLEGSNFRKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp HHHHHHHTTBCCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 544433 23445 99999999997 9999999999999999999999999999999974 556 8999999987653
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhH
Q psy15223 2215 VETYRRIRNTLRFLLANTSD-FNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFY 2293 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Y 2293 (2492)
.+..++++|++.++...+.. ++.. .+ ....|+|++++++++++.++++|++|+|++|++.+++|+ +++|+|
T Consensus 396 ~~l~~~l~n~~~R~~~~~~~~~~~~---~~---~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Y 467 (560)
T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGV---LA---SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRY 467 (560)
T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTB---CC---SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CC---CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHH
Confidence 33556677766443322111 1110 11 124689999999999999999999999999999999998 679999
Q ss_pred HHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHccc
Q psy15223 2294 LDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSD 2346 (2492)
Q Consensus 2294 le~~K~~l~~~~-~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~ 2346 (2492)
++..|++..... .+...+.+++.+++++++.+++||+|||||+|||||+.|+-
T Consensus 468 i~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 468 VDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 999998754332 33455667788999999999999999999999999999963
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-71 Score=733.27 Aligned_cols=457 Identities=21% Similarity=0.320 Sum_probs=381.9
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+++.|||||||.|||||+++++++|+++||+||+||+|++++|||+||+||+.+|++. +.++.+ ++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---g~~~~~-------~~ 71 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKA-------FV 71 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHH-------HH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc---CCCHHH-------HH
Confidence 46899999999999999999999999999999999999999999999999999999999987 778765 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
.++++.++++|++||+++ |.+++|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|++++.++.
T Consensus 72 ~~~~~~~~~~~~~lgi~~--d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--------- 140 (500)
T 2d5b_A 72 DRVSGRFKRAWDLLGIAY--DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--------- 140 (500)
T ss_dssp HHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---------
T ss_pred HHHHHHHHHHHHHhCCcC--CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---------
Confidence 889999999999999965 568999999999999999999999999999999999999999887553210
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
+
T Consensus 141 ------------------------------~------------------------------------------------- 141 (500)
T 2d5b_A 141 ------------------------------E------------------------------------------------- 141 (500)
T ss_dssp ------------------------------T-------------------------------------------------
T ss_pred ------------------------------C-------------------------------------------------
Confidence 0
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++|||||+|++++.++|||+++++ +++.
T Consensus 142 --------------------------------------------g~c~~~~~~v~~~~~~~wf~~l~~--------~~~~ 169 (500)
T 2d5b_A 142 --------------------------------------------GLCPIHGRPVERRKEGNYFFRMEK--------YRPW 169 (500)
T ss_dssp --------------------------------------------TBCTTTCSBCEEEEEEEEEECGGG--------GHHH
T ss_pred --------------------------------------------CcCCCCCCeeeEEecCceEEEcHH--------HHHH
Confidence 139999999999999999999999 8999
Q ss_pred HHHhhhc-c-eEecccchhHHHHhhh-CCCCccccc--cc-CCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1999 AITAINK-I-KFFPSWGKDRLKSMIL-NRPDWTISR--QR-HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1999 ~~~~~~~-v-~~~P~~~~~~~~~~l~-~~~DW~ISR--qr-~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
+++.+++ . .+.|+..++++.+|++ +++|||||| || +||+|||..
T Consensus 170 l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~------------------------------ 219 (500)
T 2d5b_A 170 LQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD------------------------------ 219 (500)
T ss_dssp HHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE------------------------------
T ss_pred HHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC------------------------------
Confidence 9999986 3 4579999999999996 679999999 77 699999930
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc--ccCCcCceeeecccchhhhhHHHHHHHHHH-hcCC
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK--KQLIFPADLYLEGSDQHRGWFHSSLLTSII-LNKS 2149 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~--~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~-l~~~ 2149 (2492)
+++|+||||||+++|++.+....+ ++.+||+|+|++|+||++ ||..++++.+ ..|.
T Consensus 220 -------------------~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~~~~~g~ 278 (500)
T 2d5b_A 220 -------------------ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILK--PHAVFWPTMLKAAGI 278 (500)
T ss_dssp -------------------EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHH--HHHTHHHHHHHHHTC
T ss_pred -------------------CCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEEEEeechhh--hHHHHHHHHHHHcCC
Confidence 235899999999999887654421 234589999999999999 5666654443 2377
Q ss_pred ccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHHH--HHHHHHHHH
Q psy15223 2150 APYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVET--YRRIRNTLR 2226 (2492)
Q Consensus 2150 ~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~~--~~kl~n~~r 2226 (2492)
.||+++++||||++.+|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.+.+..+. .++++|+..
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~ 358 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQ 358 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988999999999999999999999999999999997 79999999999998776542 233455543
Q ss_pred HHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccC
Q psy15223 2227 FLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK 2306 (2492)
Q Consensus 2227 ~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~ 2306 (2492)
.+...+.+...+ ..+.. .++|++++++++.+.+.++|++|+|+.|++.+++|+ .++|+|++..|++.....
T Consensus 359 r~~~~~~~~~~~--~~~~~----~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~- 429 (500)
T 2d5b_A 359 RTRAMLFRFAEG--RIPEP----VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKK- 429 (500)
T ss_dssp HHHHHHHHHSTT--BCCCC----CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHH-
T ss_pred HHHHHHHHhcCC--CCCch----hHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccC-
Confidence 322211110000 01111 137889999999999999999999999999999999 478999999998754321
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccC
Q psy15223 2307 NSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2307 ~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
+..+.++++.+++++++.++++|+|||||+|||||+.|+..
T Consensus 430 ~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 430 EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 22334567888999999999999999999999999999753
|
| >4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-53 Score=498.36 Aligned_cols=241 Identities=32% Similarity=0.565 Sum_probs=219.1
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCcee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTI 279 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i 279 (2492)
|||+|||++.++..++.+.|+++++||+ +|||+++||.|.|+||+|++|.|+|++++++ +.+.+++....+.+++++|
T Consensus 1 MrmpRff~~~~l~~~~~i~L~~~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~~~e~~~~v 80 (251)
T 4e8b_A 1 MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHI 80 (251)
T ss_dssp --CCEEECSSCCCTTCEEECCHHHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEEEEEEECCCCCSSEE
T ss_pred CCCCEEEECcccCCCCEEEeCHHHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEEeeeecCCCCCCceE
Confidence 9999999999999999999999999999 9999999999999999999999999999765 6677888888888888999
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
+|+||++|+++|||+|||||||||++|+|+.|+||++++++++..+|.+||++|++||||||+|+++|+|.++.+|++++
T Consensus 81 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~~~~~l 160 (251)
T 4e8b_A 81 HLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC 160 (251)
T ss_dssp EEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEEHHHHH
T ss_pred EEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccc
Q psy15223 360 ISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGV 439 (2492)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~l 439 (2492)
........++++++....+..+. ...+++.++||||||||++|++.+.++||++|||||||||||||+++|++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als~l~~~ 238 (251)
T 4e8b_A 161 AEQDEGLKLNLHPRASNSINTLP--LPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVR 238 (251)
T ss_dssp HCCCSSEEEEECTTCSCBGGGSC--SCCCEEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred hhcCcCceEeechhhhCchhhcc--ccCCcEEEEECCCCCCCHHHHHHHHHCCCEEecCCCCceeHHHHHHHHHHHHHHH
Confidence 87666666677766555443332 2346799999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy15223 440 WGEIK 444 (2492)
Q Consensus 440 y~~~~ 444 (2492)
++++-
T Consensus 239 ~GdlG 243 (251)
T 4e8b_A 239 FGDLG 243 (251)
T ss_dssp TSSTT
T ss_pred HccCC
Confidence 98874
|
| >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-51 Score=484.53 Aligned_cols=242 Identities=34% Similarity=0.580 Sum_probs=206.9
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCcee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTI 279 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i 279 (2492)
|+|+|||++.++..+..+.|+++++||+ +|||+++||.|.|+||+|++|.|+|++++++ ..+.+.+....+++++++|
T Consensus 3 M~m~r~f~~~~~~~~~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~~~l 82 (257)
T 1vhy_A 3 LRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKI 82 (257)
T ss_dssp --CCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEECCCCCSSCE
T ss_pred CcccEEEECcccCCCCEEEeCHHHHHHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEEEecccCCCCceE
Confidence 7899999988776788999999999999 9999999999999999999999999998765 5677776666677778899
Q ss_pred eEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHH
Q psy15223 280 TLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWL 359 (2492)
Q Consensus 280 ~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l 359 (2492)
+|+||+||+++|||+|||||||||++|+|+.|+||++++++++..||.+||++|++||||||+|+++|+|.++.+|++++
T Consensus 83 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~l 162 (257)
T 1vhy_A 83 HLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWC 162 (257)
T ss_dssp EEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHH
T ss_pred EEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeeccc
Q psy15223 360 ISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGV 439 (2492)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~l 439 (2492)
........++++++....+..+. ....+++.++||||||||++|++.+.++||++|||||||||||||+++|+++++..
T Consensus 163 ~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~als~l~~~ 241 (257)
T 1vhy_A 163 AENDGALKLNLHPRAHYSIKTLP-TIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQIC 241 (257)
T ss_dssp TCCSSCEEEEECTTCCCBGGGCC-CCCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEcCCCccchhhhh-ccCCCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHHHHHHHHHHHHH
Confidence 74333445555655443332221 11234799999999999999999999999999999999999999999999999987
Q ss_pred ccccc
Q psy15223 440 WGEIK 444 (2492)
Q Consensus 440 y~~~~ 444 (2492)
++.+.
T Consensus 242 ~~~~~ 246 (257)
T 1vhy_A 242 FGDLG 246 (257)
T ss_dssp HSGGG
T ss_pred hchhh
Confidence 77654
|
| >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=481.41 Aligned_cols=242 Identities=28% Similarity=0.384 Sum_probs=196.7
Q ss_pred ccccccccccccc---CCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCC
Q psy15223 202 IKMLRFYYPIPFI---IGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELP 276 (2492)
Q Consensus 202 m~M~r~f~~~~~~---~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~ 276 (2492)
|+|+|||++.++. .+..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ ..+.+.+....+++++
T Consensus 1 M~m~r~f~~~~~~~~~~~~~i~L~~~~~~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~ 80 (268)
T 1vhk_A 1 MSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP 80 (268)
T ss_dssp ---CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEECCCCCCCS
T ss_pred CCCcEEEECccccccCCCCEEEeCHHHHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEEeccCCCCC
Confidence 8899999987765 577899999999999 9999999999999999999999999998765 5677777666677778
Q ss_pred ceeeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchh
Q psy15223 277 YTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFN 356 (2492)
Q Consensus 277 ~~i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~ 356 (2492)
++|+|+||+||+++|||+|||||||||++|+|+.|+||++++++++..||.+||++|++||||||+|+++|+|.++.+|+
T Consensus 81 ~~v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~ 160 (268)
T 1vhk_A 81 IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQ 160 (268)
T ss_dssp SEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHH
T ss_pred ccEEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCCHH
Confidence 89999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHhhccc-ccEEEeccCCccccccc------ccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccc
Q psy15223 357 NWLISKIS-CARILLSPRGRKKLSCW------ANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETAS 429 (2492)
Q Consensus 357 ~~l~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~ 429 (2492)
+++..... ...++++++.......+ .......++.++||||||||++|++.+.++||++|||||||||+|||+
T Consensus 161 ~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~ 240 (268)
T 1vhk_A 161 QLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAP 240 (268)
T ss_dssp HHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSSCCCTTTHH
T ss_pred HHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHHH
Confidence 99975433 23455555432111111 111112379999999999999999999999999999999999999999
Q ss_pred hhheeeeccccccc
Q psy15223 430 LVALAILNGVWGEI 443 (2492)
Q Consensus 430 ~~~~~~v~~ly~~~ 443 (2492)
++|+++++..++.+
T Consensus 241 i~als~l~~~~~~~ 254 (268)
T 1vhk_A 241 LYALSAISYQTELL 254 (268)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998877654
|
| >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=462.24 Aligned_cols=226 Identities=27% Similarity=0.400 Sum_probs=197.1
Q ss_pred cccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccceEEEEEeeeecccCCCceee
Q psy15223 202 IKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQIISFLFREIELPYTIT 280 (2492)
Q Consensus 202 m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (2492)
|+|+|||++ +..+.|+++++||+ +|||+++||.|.|+||+| .|.|+|+++++...+.+.+....+++++++|+
T Consensus 1 M~m~r~f~~-----~~~~~L~~~~~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~~~~~~i~~~~~~~~~~~~~v~ 74 (228)
T 1v6z_A 1 MRPHRAFSP-----GLTGVLPLRETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRVLEERRPEREVGVEVV 74 (228)
T ss_dssp -CCCEEECG-----GGCSBCCHHHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCSSCEEEEEEEECCCCSCSSCEE
T ss_pred CCccEEEEC-----CCEEEeCHHHHHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCCeEEEEEEEEeccccCCCccEE
Confidence 889999997 46788999999999 999999999999999999 99999999876555777776666778788999
Q ss_pred EEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 281 LVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 281 L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
|+||+||+++|||+|||||||||++|+|+.|+||++++ +..+|.+||++|++||||||+|+++|+|.++.+|++++.
T Consensus 75 L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~---~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~~~~l~ 151 (228)
T 1v6z_A 75 LYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKE---MGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQ 151 (228)
T ss_dssp EEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSC---CCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCC
T ss_pred EEEEecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeec---cccchHHHHHHHHHHHHHHcCCCcCcEEecCCCHHHHhh
Confidence 99999999999999999999999999999999999988 446789999999999999999999999999999999986
Q ss_pred hcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecccc
Q psy15223 361 SKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVW 440 (2492)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ly 440 (2492)
. ...++++++....+..+. . ..+++.++||||||||++|++.+.++||++|||||||||+|||+++|+++++..+
T Consensus 152 --~-~~~l~~~~~~~~~l~~~~-~-~~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~~~~~~ 226 (228)
T 1v6z_A 152 --V-AQGLVAHVGATARVREVL-D-PEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGE 226 (228)
T ss_dssp --C-SSEEEECTTCCCCHHHHC-C-TTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHHHTGGG
T ss_pred --C-CCEEEEeCCCccchhhhc-c-CCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEeHHHHHHHHHHHHHHh
Confidence 2 445666655433222221 1 1257999999999999999999999999999999999999999999999988765
Q ss_pred c
Q psy15223 441 G 441 (2492)
Q Consensus 441 ~ 441 (2492)
+
T Consensus 227 g 227 (228)
T 1v6z_A 227 G 227 (228)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=450.19 Aligned_cols=224 Identities=29% Similarity=0.369 Sum_probs=194.4
Q ss_pred cccccccccccCCcEEEeCcchhhHHHHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCce-eeE
Q psy15223 204 MLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYT-ITL 281 (2492)
Q Consensus 204 M~r~f~~~~~~~~~~i~L~~~~~~Hl~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~-i~L 281 (2492)
|+|||++ +..+..+.|+++++||++|||+++||.|.| ||+|+.|.|+|++++++ ..+.+.+.... ++ +++ |+|
T Consensus 1 m~r~f~~--~~~~~~~~L~~~~~~Hl~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i~~~~~~-~e-~~~~i~L 75 (229)
T 2egv_A 1 MHVFYSE--ERRGNLLILREGEVKHFRVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEIVEELET-KL-PPKDITL 75 (229)
T ss_dssp CCEEECS--CEETTEEEEETHHHHHHHHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEEEEECCC-CC-CSSEEEE
T ss_pred CcEEEEe--cCCCCEEEeCHHHHHHHHhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEEEEEecC-CC-CCceEEE
Confidence 7899998 445788999999999999999999999999 99999999999998765 55667665555 66 778 999
Q ss_pred EEec-CCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHh
Q psy15223 282 VQAL-PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLI 360 (2492)
Q Consensus 282 ~~al-~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~ 360 (2492)
+||+ ||+++|||+|||||||||++|+|+.|+||++++ ++..+|.+||++|++||||||+|+++|+|.++.+|++++.
T Consensus 76 ~~al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~--~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~~~~~~l~ 153 (229)
T 2egv_A 76 YQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--EAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIP 153 (229)
T ss_dssp EEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCH--HHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGGCCC
T ss_pred EEecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecc--cchhhHHHHHHHHHHHHHHHcCCCcCcEEcccCCHHHHHh
Confidence 9999 999999999999999999999999999999998 6678899999999999999999999999999999999987
Q ss_pred hcccccEEEeccCCcccccccccCCCCC-ceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecc
Q psy15223 361 SKISCARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNG 438 (2492)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ 438 (2492)
... ...++++++....+..+ ...+ ++.++||||||||++|++.+.++||++|||||||||+|||+++|++++++
T Consensus 154 ~~~-~~~li~~~~~~~~l~~~---~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~~~~ 228 (229)
T 2egv_A 154 ESE-ENIILDNFYEGVKPKDV---NLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSILMN 228 (229)
T ss_dssp CSS-EEEEECTTSCCBCGGGS---CTTCSEEEEEECCTTCCCHHHHHHHHHTTCEEECCSSSCCCHHHHHHHHHHHHHH
T ss_pred hCC-CCEEEEcCCccchhhhh---ccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEhHHHHHHHHHHHhc
Confidence 432 33455565443333222 1134 79999999999999999999999999999999999999999999987753
|
| >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=454.34 Aligned_cols=234 Identities=27% Similarity=0.322 Sum_probs=196.0
Q ss_pred ccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCce
Q psy15223 201 NIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYT 278 (2492)
Q Consensus 201 ~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~ 278 (2492)
.|+|++||.+.. . ..+.|+++++||+ +|||+++||.|.|+||+|+.|.|+|++++++ +.+++++....+++++++
T Consensus 2 ~~~m~~f~~~~~--~-~~~~L~~~~~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~~~e~~~~ 78 (257)
T 3kw2_A 2 SLSLPLFYAPDI--E-QSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDR 78 (257)
T ss_dssp ---CCEEECTTT--T-TCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCSSCSC
T ss_pred CccceEEEcCCC--C-CeEEeCHHHHHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEEEecccCCCCCCc
Confidence 488999998754 2 2788999999999 9999999999999999999999999998765 567777777766788889
Q ss_pred eeEEEecCC-chhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhH
Q psy15223 279 ITLVQALPE-NRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNN 357 (2492)
Q Consensus 279 i~L~~al~K-~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~ 357 (2492)
|+|+||+|| ++||||+|||||||||++|+|+.|+||+.+ .+|.+||++|++||||||+|+++|+|.++.+|++
T Consensus 79 i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~------~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~ 152 (257)
T 3kw2_A 79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERR------RIKAERLERIAISAMKQSLKASFPVIRVNIPIQT 152 (257)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCS------CCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHH
T ss_pred eEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhh------hhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHH
Confidence 999999999 599999999999999999999999999743 4689999999999999999999999999999999
Q ss_pred HHhh-cccccEEEecc-CC-------cccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeecccc
Q psy15223 358 WLIS-KISCARILLSP-RG-------RKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETA 428 (2492)
Q Consensus 358 ~l~~-~~~~~~~l~~~-~~-------~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta 428 (2492)
++.. ......++++. +. ...+.... ....+++.++||||||||++|++.+.++||.+|||||||||||||
T Consensus 153 ~l~~~~~~~~~li~~~~e~~~~~~~~~~~l~~~~-~~~~~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA 231 (257)
T 3kw2_A 153 VIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDF-YHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETA 231 (257)
T ss_dssp HHHHSCTTSEEEEECCCTTCC-----CCCCGGGT-CCTTSCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSSCCCHHHH
T ss_pred HHhhccccCCEEEEEcccccccccccccchhHhh-ccCCCcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCCcchHHHH
Confidence 9975 23333455552 22 12221111 112468999999999999999999999999999999999999999
Q ss_pred chhheeeecccccccc
Q psy15223 429 SLVALAILNGVWGEIK 444 (2492)
Q Consensus 429 ~~~~~~~v~~ly~~~~ 444 (2492)
+++|+++++..++..+
T Consensus 232 ~i~als~~~~~~~~~~ 247 (257)
T 3kw2_A 232 GLVACQWIHTLQACYR 247 (257)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999988766543
|
| >1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=425.82 Aligned_cols=220 Identities=26% Similarity=0.306 Sum_probs=181.6
Q ss_pred cccccccccccCCcEEEeCcchhhHHHHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeeeecccCCCceeeEE
Q psy15223 204 MLRFYYPIPFIIGQYLYLPDNIVNHLNVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFLFREIELPYTITLV 282 (2492)
Q Consensus 204 M~r~f~~~~~~~~~~i~L~~~~~~Hl~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~~~~~~~~~~i~L~ 282 (2492)
|+..+- ++..+..+.|+++++||++|||+++||.|.|+||+|+.|.|+|++++++ ..+++.+....+++++++|+|+
T Consensus 13 ~~~~~~--~~~~~~~~~L~~~~~~Hl~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~~~~~~~~e~~~~i~L~ 90 (234)
T 1z85_A 13 MPHLFY--GTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVV 90 (234)
T ss_dssp -CCCEE--CEEETTEEEECHHHHHHHHHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCCCSSCEEEE
T ss_pred CCCCCC--ccCCCCEEEeCHHHHHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEEEEeccCCCCCceEEEE
Confidence 555544 4567788999999999999999999999999999999999999998765 5677777766667778899999
Q ss_pred EecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCCchhHHHhhc
Q psy15223 283 QALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYFNNWLISK 362 (2492)
Q Consensus 283 ~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~~~~~~l~~~ 362 (2492)
||+||+++|||+|||||||||++|+|+.|+ |+++ .+|.+||++|++||||||+|+++|+|. +.+|++++...
T Consensus 91 ~al~K~~r~e~ilqkatELGV~~I~p~~s~-s~~~------~~k~eRw~~i~~eAaeQs~R~~~P~v~-~~~~~~~l~~~ 162 (234)
T 1z85_A 91 VPIGRWERTRFLIEKCVELGVDEIFFHKFE-RSQH------EISLDKAKIVVREAAKQCKRYLFPKVS-FLEKLEFSGNV 162 (234)
T ss_dssp EECCCHHHHHHHHHHHHHTTCSEEEEECCT-TCCC------CCCHHHHHHHHHHHHHHHTCSBCCEEE-ECCSCCCCSEE
T ss_pred EeccchHHHHHHHHHHHHhCCCEEEEEEEE-EEec------hhhHHHHHHHHHHHHHHcCCCccceEE-eccHHHHHhhC
Confidence 999999999999999999999999999999 9887 358999999999999999999999999 99999998643
Q ss_pred ccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhheeeecccccc
Q psy15223 363 ISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWGE 442 (2492)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~~v~~ly~~ 442 (2492)
. .. +++++... +..+. ++++.++||||||||++|++.+.++ |++|||||||||+|||+++|+++++..++.
T Consensus 163 ~--~~-lv~e~~~~-l~~~~----~~~i~l~IGPEGGfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala~l~~~~~~ 233 (234)
T 1z85_A 163 I--TL-DLDASQNL-LDANL----EGSITVVVGPEGGFSEKERELLRSS-TTIVSLGKKILRFETAAILTVGYIALKKQK 233 (234)
T ss_dssp E--EE-CC---CCC-SSSCC----CSSEEEEECCTTCCCHHHHHHHHHH-SEEC------CCHHHHHHHHHHHHHHHTTC
T ss_pred C--Ce-EEECCcch-hhhcc----CCCEEEEEcCCCCCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHHHHHHHhcC
Confidence 2 23 44544433 32221 2579999999999999999999999 999999999999999999999998876653
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=392.98 Aligned_cols=143 Identities=23% Similarity=0.239 Sum_probs=127.7
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccCC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 2200 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~~ 2200 (2492)
+.|++.+|.|++|+|+.++++++.++.++ ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||++++++
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~y 301 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHY 301 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCT
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCC
Confidence 57999999999999999999999999988 99999999988999999999999999999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Q psy15223 2201 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 2279 (2492)
Q Consensus 2201 ~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~a~~ 2279 (2492)
+++++||++.++++.+.+++|+|+++++... . + + .+..+.+.+.++|+ +|+...|+.
T Consensus 302 r~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~----~------~-------~-----~~~~~~~~~~~a~~dD~nt~~a~~ 359 (462)
T 3tqo_A 302 RNPLSYSKENLENGRLALERFYLALRGLPVV----N------H-------E-----KTSSYTDRFYEAMDDDFNTPIAFA 359 (462)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHHHHTTCCC----------------------------CHHHHHHHHHHTBTCCHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc----c------c-------h-----hHHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999865210 0 0 0 13456778889997 899999999
Q ss_pred HHHHHHH
Q psy15223 2280 KLQIYCS 2286 (2492)
Q Consensus 2280 ~l~~f~~ 2286 (2492)
.|++++.
T Consensus 360 ~l~~~~~ 366 (462)
T 3tqo_A 360 LLFEMVR 366 (462)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=391.51 Aligned_cols=149 Identities=23% Similarity=0.223 Sum_probs=130.7
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~ 1050 (2492)
+.|+|.+|.|++++|+.++++++.++.|. ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||+++++|
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~y 301 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHY 301 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCT
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCC
Confidence 57999999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccchHHHHH
Q psy15223 1051 SKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYEFHMIVS 1129 (2492)
Q Consensus 1051 ~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~f~~a~~ 1129 (2492)
+++++||++.++++.+.+++|+|+++++... . . + .+..+...+.++|+ .|+...|+.
T Consensus 302 r~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~----~-------~------~-----~~~~~~~~~~~a~~dD~nt~~a~~ 359 (462)
T 3tqo_A 302 RNPLSYSKENLENGRLALERFYLALRGLPVV----N-------H------E-----KTSSYTDRFYEAMDDDFNTPIAFA 359 (462)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHHHHTTCCC----------------------------CHHHHHHHHHHTBTCCHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc----c-------c------h-----hHHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999999999875321 0 0 0 13456778888998 899999999
Q ss_pred HHHHHHhhhhhhhHH
Q psy15223 1130 KLQIYCSEDLGSFYL 1144 (2492)
Q Consensus 1130 ~l~~f~~~~ls~~Yl 1144 (2492)
.|++++.. .|.++
T Consensus 360 ~l~~~~~~--~n~~~ 372 (462)
T 3tqo_A 360 LLFEMVRE--INRFR 372 (462)
T ss_dssp HHHHHHHH--HHHHH
T ss_pred HHHHHHHH--Hhhhh
Confidence 99999842 34444
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=391.13 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=116.5
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhcc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAST 1048 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s~ 1048 (2492)
|.|+|.+|+|++++|+.+.++++.++++. ||.++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||++++
T Consensus 253 ~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~ 330 (501)
T 3sp1_A 253 ALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330 (501)
T ss_dssp CCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc
Confidence 57999999999999999999999999985 99999999 7776 7999999999999999999999 9999999999999
Q ss_pred CcccccccCHHHHHHHHHH----HHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccc
Q psy15223 1049 DYSKDLSISNEILNRVVET----YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYE 1123 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~~~----~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~-~~~ 1123 (2492)
+|++|++||++.++++.+. +++|+|+++.+......-... ... ... ...+..+...+.+||+ .++
T Consensus 331 ~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~-~~~--------~~~~~~~~~~f~~am~dDln 400 (501)
T 3sp1_A 331 HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLK-NFG--------FSVEKEYYDSFVEKISFDLN 400 (501)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTT-SCS--------SHHHHHHHHHHHHHHHBTSC
T ss_pred cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-ccc-chh--------hhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999 899999887542111000000 000 000 1234567778889998 899
Q ss_pred hHHHHHHHHHHHh
Q psy15223 1124 FHMIVSKLQIYCS 1136 (2492)
Q Consensus 1124 f~~a~~~l~~f~~ 1136 (2492)
...|+..|++++.
T Consensus 401 t~~al~~l~~~~~ 413 (501)
T 3sp1_A 401 VAQGLALLWEIIK 413 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999984
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=340.27 Aligned_cols=184 Identities=33% Similarity=0.593 Sum_probs=160.5
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.|+++||+|++.+.... ...+.+++||||||||||||+||||||+++|++++..+ +.+++++++++++
T Consensus 2 ~S~~i~V~F~~~~~~~~---------~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~---~~~i~a~~~~~~~ 69 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD---EALILEEGLGRKL 69 (186)
T ss_dssp -CCEEEEEEEBSCGGGG---------TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETT---EEEEEEHHHHHHH
T ss_pred ccceEEEEEEeCCCccc---------cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCC---cchHHHHHHHHHH
Confidence 58999999999753100 01257999999999999999999999999999999855 7899999999998
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCC-CceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCC
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINY-NRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSD 762 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~-~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~ 762 (2492)
.++ +...+.+++|.+|.|++|.||+.. . ++.+||+.++||+++.|||+||+|||||++||++|++||| +
T Consensus 70 ~~~---~~~~~~~~~G~~l~g~~~~~P~~~----~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L---~ 139 (186)
T 1wny_A 70 LGE---GTPVLKTFPGKALEGLPYTPPYPQ----ALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---P 139 (186)
T ss_dssp HCT---TSCEEEEEEHHHHTTCBBCCSSCC----CCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTC---C
T ss_pred hhc---CcEEEEEEEcccccCcEEECCccc----cCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCC---c
Confidence 764 334569999999999999999951 1 5789999999999999999999999999999999999999 8
Q ss_pred cccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccc
Q psy15223 763 IINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 811 (2492)
Q Consensus 763 ~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 811 (2492)
++++||++|+|+++ + |.|+++++|++.|++.|+++|.+++.++|+||
T Consensus 140 i~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 140 LLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CCCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred eEeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 88999999999988 7 99999999999999999999999999999996
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=383.11 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=115.9
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAST 2198 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s~ 2198 (2492)
|.|+|.+|+|++|+|+.+.++++.+++++ ||.++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||++++
T Consensus 253 ~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~ 330 (501)
T 3sp1_A 253 ALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS 330 (501)
T ss_dssp CCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc
Confidence 67999999999999999999999999885 99999999 7776 7999999999999999999999 9999999999999
Q ss_pred CCCCcccccHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh-ccc
Q psy15223 2199 DYSKDLSISNEILNRVVET----YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR-MYE 2273 (2492)
Q Consensus 2199 ~~~~d~~fs~~~l~~~~~~----~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~ 2273 (2492)
++++|++||++.++++.+. +++|+|+++.+.......... ... ... ...+..+.+.+.++|+ +++
T Consensus 331 ~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~-~~~--------~~~~~~~~~~f~~am~dDln 400 (501)
T 3sp1_A 331 HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLK-NFG--------FSVEKEYYDSFVEKISFDLN 400 (501)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTT-SCS--------SHHHHHHHHHHHHHHHBTSC
T ss_pred cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-ccc-chh--------hhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999 899998887532110000000 000 000 1134566778889997 899
Q ss_pred HHHHHHHHHHHHH
Q psy15223 2274 FHMIVSKLQIYCS 2286 (2492)
Q Consensus 2274 f~~a~~~l~~f~~ 2286 (2492)
...|+..|++++.
T Consensus 401 t~~al~~l~~~~~ 413 (501)
T 3sp1_A 401 VAQGLALLWEIIK 413 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999984
|
| >4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=357.14 Aligned_cols=165 Identities=33% Similarity=0.580 Sum_probs=150.0
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
....++|++|+||+++|||+|||||||||++|+|+.|+||++++++++..+|.+||++|++||||||+|+++|+|.++.+
T Consensus 76 ~~~~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~ 155 (251)
T 4e8b_A 76 SPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMD 155 (251)
T ss_dssp CSSEEEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEE
T ss_pred CCceEEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALA 1566 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~ 1566 (2492)
|++|+.......+++++++....+.... ...++++++||||||||++|+++|.++||++|||||||||||||+++|++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als 233 (251)
T 4e8b_A 156 LEAWCAEQDEGLKLNLHPRASNSINTLP--LPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAIT 233 (251)
T ss_dssp HHHHHHCCCSSEEEEECTTCSCBGGGSC--SCCCEEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHH
T ss_pred HHHHHhhcCcCceEeechhhhCchhhcc--ccCCcEEEEECCCCCCCHHHHHHHHHCCCEEecCCCCceeHHHHHHHHHH
Confidence 9999998777777888877665544332 23568999999999999999999999999999999999999999999999
Q ss_pred hhccccC
Q psy15223 1567 ILNGELS 1573 (2492)
Q Consensus 1567 ~~~a~l~ 1573 (2492)
++++.+-
T Consensus 234 ~l~~~~G 240 (251)
T 4e8b_A 234 ALQVRFG 240 (251)
T ss_dssp HHHHHTS
T ss_pred HHHHHHc
Confidence 9987654
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=374.20 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=114.3
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhh-cChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~-yGaD~lRl~l~s 1047 (2492)
.|.|+|++|+||+++|+.+...++.++.+..||+++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||+++
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 389999999999999999999999999888899999999 6766 6999999999999999999999 999999999999
Q ss_pred cCcccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHH
Q psy15223 1048 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHM 1126 (2492)
Q Consensus 1048 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~ 1126 (2492)
+++++|++||++.+.++.+.+++|+|+++++ .+ + .++++.+++.++| ++|+|++
T Consensus 322 ~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~~--------~-------------~~~~~~~~v~~a~~d~~~~~~ 376 (414)
T 3c8z_A 322 GHYREDRFWSNEVLDEANARLARWRSATALP----EA--------P-------------DATDVIARVRQYLADDLDTPK 376 (414)
T ss_dssp SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----CB--------S-------------CCHHHHHHHHHHHHBTCCHHH
T ss_pred cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----cc--------h-------------hHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999987643 10 0 1256788899999 7999999
Q ss_pred HHHHHHHHHh
Q psy15223 1127 IVSKLQIYCS 1136 (2492)
Q Consensus 1127 a~~~l~~f~~ 1136 (2492)
|+..|++|+.
T Consensus 377 Al~~i~~~~~ 386 (414)
T 3c8z_A 377 ALAALDGWCT 386 (414)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999994
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=378.53 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=113.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhc-cChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNL-FGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~l~s 2197 (2492)
.|+|+|++|+||+++|+....+.+.++.+..||+++++| ||+. .+|+|||||+||+|+|.+++++ ||+|++|||+++
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~ 321 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS 321 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEe
Confidence 489999999999999999999999999888899999999 6766 6999999999999999999999 999999999999
Q ss_pred cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHM 2276 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~ 2276 (2492)
+++++|++|+++.+.++.+.+++|+|+++++ . . + .++++.+++.++| ++|+|++
T Consensus 322 ~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~----~----~-------------~~~~~~~~v~~a~~d~~~~~~ 376 (414)
T 3c8z_A 322 GHYREDRFWSNEVLDEANARLARWRSATALP----E----A----P-------------DATDVIARVRQYLADDLDTPK 376 (414)
T ss_dssp SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----C----B----S-------------CCHHHHHHHHHHHHBTCCHHH
T ss_pred cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----c----c----h-------------hHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999987543 1 0 0 1256788899999 7999999
Q ss_pred HHHHHHHHHH
Q psy15223 2277 IVSKLQIYCS 2286 (2492)
Q Consensus 2277 a~~~l~~f~~ 2286 (2492)
|+..|++|+.
T Consensus 377 Al~~i~~~~~ 386 (414)
T 3c8z_A 377 ALAALDGWCT 386 (414)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999994
|
| >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=355.21 Aligned_cols=163 Identities=36% Similarity=0.586 Sum_probs=139.5
Q ss_pred cceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCCh
Q psy15223 1408 NFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYF 1487 (2492)
Q Consensus 1408 ~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~ 1487 (2492)
..+++|++|+||+++|||+|||||||||++|+|+.|+||++++++++.++|.+||++|+++|||||+|+++|+|.+|.+|
T Consensus 79 ~~~l~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~ 158 (257)
T 1vhy_A 79 HLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKL 158 (257)
T ss_dssp SSCEEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEH
T ss_pred CceEEEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCH
Confidence 45799999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred hHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhhh
Q psy15223 1488 NNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 1567 (2492)
Q Consensus 1488 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~~ 1567 (2492)
++|+........++++++....+.... ....++++++||||||||++|+++|.++||++|||||||||||||+++|++.
T Consensus 159 ~~~l~~~~~~~~l~~~~~~~~~l~~~~-~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~als~ 237 (257)
T 1vhy_A 159 QDWCAENDGALKLNLHPRAHYSIKTLP-TIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISA 237 (257)
T ss_dssp HHHHTCCSSCEEEEECTTCCCBGGGCC-CCCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEcCCCccchhhhh-ccCCCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHHHHHHHHHH
Confidence 999985444556777765443332221 1123589999999999999999999999999999999999999999999998
Q ss_pred hccc
Q psy15223 1568 LNGE 1571 (2492)
Q Consensus 1568 ~~a~ 1571 (2492)
+++.
T Consensus 238 l~~~ 241 (257)
T 1vhy_A 238 LQIC 241 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=353.09 Aligned_cols=165 Identities=30% Similarity=0.400 Sum_probs=131.5
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
....++|++|+||+++|||+|||||||||++|+|+.|+||++++++++..+|.+||++|+++|||||+|+++|+|.+|.+
T Consensus 79 ~~~~v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~ 158 (268)
T 1vhk_A 79 LPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHS 158 (268)
T ss_dssp CSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBC
T ss_pred CCccEEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCC
Confidence 34579999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred hhHHHhcccc-cceEEeccCCccccccc------ccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeec
Q psy15223 1487 FNNWLISKIS-CARILLSPRGRKKLSCW------ANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTET 1559 (2492)
Q Consensus 1487 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ET 1559 (2492)
|++|+..... ...++++++.......+ ......++++|+||||||||++|+++|.++||++||||||||||||
T Consensus 159 ~~~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtET 238 (268)
T 1vhk_A 159 FQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTET 238 (268)
T ss_dssp HHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSSCCCTTT
T ss_pred HHHHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeehHH
Confidence 9999985433 34566665532211111 1112224899999999999999999999999999999999999999
Q ss_pred cchhhhhhhccc
Q psy15223 1560 ASLVALAILNGE 1571 (2492)
Q Consensus 1560 A~~~~~~~~~a~ 1571 (2492)
|+++|++.+++.
T Consensus 239 A~i~als~l~~~ 250 (268)
T 1vhk_A 239 APLYALSAISYQ 250 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988643
|
| >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=330.02 Aligned_cols=185 Identities=34% Similarity=0.606 Sum_probs=158.7
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
.|+++||+|++.+.... ...+.+++||||||||||||+||||||+++|++++..+ +.+++++++++++
T Consensus 2 ~S~~i~V~F~~~~~~~~---------~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~---~~~i~a~~~~~~~ 69 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD---EALILEEGLGRKL 69 (186)
T ss_dssp -CCEEEEEEEBSCGGGG---------TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETT---EEEEEEHHHHHHH
T ss_pred ccceEEEEEEeCCCccc---------cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCC---cchHHHHHHHHHH
Confidence 58999999998653100 01257999999999999999999999999999999753 6799999999988
Q ss_pred HHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCc
Q psy15223 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913 (2492)
Q Consensus 1834 ~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~ 1913 (2492)
.+. . ...+.+++|.+|.|++|.||+... .++.+||+.++||++++|||+||+|||||++||++|++||| ++
T Consensus 70 ~~~-~--~~~~~~~~G~~l~g~~~~~P~~~~---~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L---~i 140 (186)
T 1wny_A 70 LGE-G--TPVLKTFPGKALEGLPYTPPYPQA---LEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PL 140 (186)
T ss_dssp HCT-T--SCEEEEEEHHHHTTCBBCCSSCCC---CSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTC---CC
T ss_pred hhc-C--cEEEEEEEcccccCcEEECCcccc---CCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCC---ce
Confidence 764 2 223489999999999999999610 05789999999999999999999999999999999999999 89
Q ss_pred ccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccc
Q psy15223 1914 INPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHS 1961 (2492)
Q Consensus 1914 ~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~ 1961 (2492)
++++|++|+|+++ + |.|+++++|++.|++.|+++|.+++.++|.||
T Consensus 141 ~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 141 LKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred EeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 9999999999987 7 99999999999999999999999999999996
|
| >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=342.18 Aligned_cols=156 Identities=29% Similarity=0.366 Sum_probs=136.8
Q ss_pred cce-eEEEEec-CCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCC
Q psy15223 1408 NFV-KNKIQAL-PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 1485 (2492)
Q Consensus 1408 ~~~-~~l~~a~-~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~ 1485 (2492)
... ++|++|+ ||+++|||+|||||||||++|+|+.|+||++++ ++..+|.+||++|+++|||||+|+++|+|.+|.
T Consensus 69 ~~~~i~L~~al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~--~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~ 146 (229)
T 2egv_A 69 PPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKE--EAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPV 146 (229)
T ss_dssp CSSEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCH--HHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCE
T ss_pred CCceEEEEEecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecc--cchhhHHHHHHHHHHHHHHHcCCCcCcEEcccC
Confidence 456 9999999 999999999999999999999999999999998 566789999999999999999999999999999
Q ss_pred ChhHHHhcccccceEEeccCCcccccccccCCCCC-ceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1486 YFNNWLISKISCARILLSPRGRKKLSCWANNQSPQ-EVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1486 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+|++|+.... ...++++++....+... ...+ +++++||||||||++|+++|.++||++|||||||||||||+++|
T Consensus 147 ~~~~~l~~~~-~~~li~~~~~~~~l~~~---~~~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~a 222 (229)
T 2egv_A 147 RLSDLIPESE-ENIILDNFYEGVKPKDV---NLEAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSI 222 (229)
T ss_dssp EGGGCCCCSS-EEEEECTTSCCBCGGGS---CTTCSEEEEEECCTTCCCHHHHHHHHHTTCEEECCSSSCCCHHHHHHHH
T ss_pred CHHHHHhhCC-CCEEEEcCCccchhhhh---ccCCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEhHHHHHHH
Confidence 9999987533 45666676544333221 1234 79999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q psy15223 1565 LAILN 1569 (2492)
Q Consensus 1565 ~~~~~ 1569 (2492)
++.+.
T Consensus 223 la~~~ 227 (229)
T 2egv_A 223 VSILM 227 (229)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
|
| >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=341.17 Aligned_cols=156 Identities=28% Similarity=0.399 Sum_probs=137.0
Q ss_pred cceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCCh
Q psy15223 1408 NFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYF 1487 (2492)
Q Consensus 1408 ~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~ 1487 (2492)
..+++|++|+||+++|||+|||||||||++|+|+.|+||++++ +..+|.+||++|+++|||||+|+++|+|.+|.+|
T Consensus 70 ~~~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~---~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~ 146 (228)
T 1v6z_A 70 GVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKE---MGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPL 146 (228)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSC---CCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEG
T ss_pred CccEEEEEEecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeec---cccchHHHHHHHHHHHHHHcCCCcCcEEecCCCH
Confidence 4579999999999999999999999999999999999999998 4467899999999999999999999999999999
Q ss_pred hHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhhh
Q psy15223 1488 NNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 1567 (2492)
Q Consensus 1488 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~~ 1567 (2492)
++|+. . ...++++++....+.... . ..++++++||||||||++|++++.++||++|||||||||||||+++|++.
T Consensus 147 ~~~l~--~-~~~l~~~~~~~~~l~~~~-~-~~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~ala~ 221 (228)
T 1v6z_A 147 KAVPQ--V-AQGLVAHVGATARVREVL-D-PEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLAL 221 (228)
T ss_dssp GGCCC--C-SSEEEECTTCCCCHHHHC-C-TTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHH
T ss_pred HHHhh--C-CCEEEEeCCCccchhhhc-c-CCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCCeeEeHHHHHHHHHH
Confidence 99987 2 566777766543322221 1 13589999999999999999999999999999999999999999999998
Q ss_pred hccc
Q psy15223 1568 LNGE 1571 (2492)
Q Consensus 1568 ~~a~ 1571 (2492)
+++.
T Consensus 222 ~~~~ 225 (228)
T 1v6z_A 222 CTAG 225 (228)
T ss_dssp HTGG
T ss_pred HHHH
Confidence 8764
|
| >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=337.49 Aligned_cols=159 Identities=28% Similarity=0.299 Sum_probs=133.7
Q ss_pred cccceeEEEEecCC-CchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccC
Q psy15223 1406 RRNFVKNKIQALPE-NRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPN 1484 (2492)
Q Consensus 1406 rr~~~~~l~~a~~k-~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~ 1484 (2492)
.....++|++|+|| ++||||+|||||||||++|+|+.|+||+++ .+|.+||++|+++|||||+|+++|+|.+|
T Consensus 74 e~~~~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~------~~k~eRw~~I~~eAaeQs~R~~~P~v~~~ 147 (257)
T 3kw2_A 74 PWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERR------RIKAERLERIAISAMKQSLKASFPVIRVN 147 (257)
T ss_dssp SSCSCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCS------CCCHHHHHHHHHHHHHHTTCSBCCEEEEE
T ss_pred CCCCceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhh------hhhHHHHHHHHHHHHHHcCCCcCCEecCc
Confidence 34567999999999 599999999999999999999999999754 25789999999999999999999999999
Q ss_pred CChhHHHhc-ccccceEEeccCC--------cccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccc
Q psy15223 1485 IYFNNWLIS-KISCARILLSPRG--------RKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRIL 1555 (2492)
Q Consensus 1485 ~~~~~~l~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rIL 1555 (2492)
.+|++|+.. .....++++++.. ...+..... ...++++++||||||||++|+++|.++||++||||||||
T Consensus 148 ~~~~~~l~~~~~~~~~li~~~~e~~~~~~~~~~~l~~~~~-~~~~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~rIL 226 (257)
T 3kw2_A 148 IPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFY-HVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRL 226 (257)
T ss_dssp EEHHHHHHHSCTTSEEEEECCCTTCC-----CCCCGGGTC-CTTSCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSSCC
T ss_pred CCHHHHHhhccccCCEEEEEcccccccccccccchhHhhc-cCCCcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCCcc
Confidence 999999976 3344556666322 122211111 125689999999999999999999999999999999999
Q ss_pred eeeccchhhhhhhccc
Q psy15223 1556 RTETASLVALAILNGE 1571 (2492)
Q Consensus 1556 R~ETA~~~~~~~~~a~ 1571 (2492)
|||||+++|++++++.
T Consensus 227 RtETA~i~als~~~~~ 242 (257)
T 3kw2_A 227 RTETAGLVACQWIHTL 242 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999988643
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-32 Score=352.77 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=129.6
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEe-eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
|.|+|++|+|++|+|+.....++.++.|. ||.++++| ||+. .+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~ 297 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSC
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCC
Confidence 68999999999999988888888888776 78888777 8887 489999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hcccHHHHH
Q psy15223 2200 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIV 2278 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~ 2278 (2492)
+++|++||++.+.++.+.+.+++|+++++. . . .+ + | .+..+.+.+.++| ++|+++.|+
T Consensus 298 ~~~~~~fs~~~l~~~~~~l~rl~n~~~~~~----~-~-----~~-----~-d-----~l~~~~~~~~~am~dd~n~~~Al 356 (461)
T 1li5_A 298 YRSQLNYSEENLKQARAALERLYTALRGTD----K-T-----VA-----P-A-----GGEAFEARFIEAMDDDFNTPEAY 356 (461)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHTTCC----T-T-----SC-----C-C-----SCHHHHHHHHHHHHBTSCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhh----c-C-----CC-----H-H-----HHHHHHHHHHHHHHhccCHHHHH
Confidence 999999999999999999999999987541 1 0 11 1 2 3567788999999 899999999
Q ss_pred HHHHHHHHhhhhhhHHH
Q psy15223 2279 SKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2279 ~~l~~f~~~~ls~~Yle 2295 (2492)
..|++|+. ..|.|++
T Consensus 357 ~~l~~l~~--~~N~~~~ 371 (461)
T 1li5_A 357 SVLFDMAR--EVNRLKA 371 (461)
T ss_dssp HHHHHHHH--HHHHHHH
T ss_pred HHHHHHHH--HHHHHHh
Confidence 99999994 3688875
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-32 Score=347.79 Aligned_cols=150 Identities=20% Similarity=0.210 Sum_probs=129.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe-eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccC
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH-GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 1049 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h-G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~ 1049 (2492)
|.|+|++|+|++++|+.....++.++.|. ||.++++| ||+. .+|+|||||+||+|+|.+++++||+|++|||+++++
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~ 297 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSC
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCC
Confidence 68999999999999998998888888776 78777777 8887 489999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH-hccchHHHH
Q psy15223 1050 YSKDLSISNEILNRVVETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY-RMYEFHMIV 1128 (2492)
Q Consensus 1050 ~~~d~~fs~~~l~~~~~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-~~~~f~~a~ 1128 (2492)
+++|++||++.+.++.+.+.+++|+++++.. . ++ + | .+..+.+.+.++| ++|+++.|+
T Consensus 298 ~~~~~~fs~~~l~~~~~~l~rl~n~~~~~~~-----~-----~~-----~-d-----~l~~~~~~~~~am~dd~n~~~Al 356 (461)
T 1li5_A 298 YRSQLNYSEENLKQARAALERLYTALRGTDK-----T-----VA-----P-A-----GGEAFEARFIEAMDDDFNTPEAY 356 (461)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHTTCCT-----T-----SC-----C-C-----SCHHHHHHHHHHHHBTSCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-----C-----CC-----H-H-----HHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999999999999999876411 0 11 1 2 3567888999999 899999999
Q ss_pred HHHHHHHhhhhhhhHHH
Q psy15223 1129 SKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1129 ~~l~~f~~~~ls~~Yl~ 1145 (2492)
..|++|+. ..|.|++
T Consensus 357 ~~l~~l~~--~~N~~~~ 371 (461)
T 1li5_A 357 SVLFDMAR--EVNRLKA 371 (461)
T ss_dssp HHHHHHHH--HHHHHHH
T ss_pred HHHHHHHH--HHHHHHh
Confidence 99999994 3577775
|
| >1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-33 Score=325.08 Aligned_cols=149 Identities=26% Similarity=0.283 Sum_probs=121.2
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
....++|++|+||+++|||+|||||||||++|+|+.|+ |+++ .+|.+||++|+++|||||+|+++|+|. |.+
T Consensus 83 ~~~~i~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~-s~~~------~~k~eRw~~i~~eAaeQs~R~~~P~v~-~~~ 154 (234)
T 1z85_A 83 PTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFE-RSQH------EISLDKAKIVVREAAKQCKRYLFPKVS-FLE 154 (234)
T ss_dssp CSSCEEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCT-TCCC------CCCHHHHHHHHHHHHHHHTCSBCCEEE-ECC
T ss_pred CCceEEEEEeccchHHHHHHHHHHHHhCCCEEEEEEEE-EEec------hhhHHHHHHHHHHHHHHcCCCccceEE-ecc
Confidence 34579999999999999999999999999999999999 9887 257899999999999999999999999 999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALA 1566 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~ 1566 (2492)
|++|+.... .. ++ +++... +... . +++++++||||||||++|+++|.++ |++|||||||||||||+++|++
T Consensus 155 ~~~~l~~~~-~~-lv-~e~~~~-l~~~---~-~~~i~l~IGPEGGfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala 225 (234)
T 1z85_A 155 KLEFSGNVI-TL-DL-DASQNL-LDAN---L-EGSITVVVGPEGGFSEKERELLRSS-TTIVSLGKKILRFETAAILTVG 225 (234)
T ss_dssp SCCCCSEEE-EE-CC----CCC-SSSC---C-CSSEEEEECCTTCCCHHHHHHHHHH-SEEC------CCHHHHHHHHHH
T ss_pred HHHHHhhCC-Ce-EE-ECCcch-hhhc---c-CCCEEEEEcCCCCCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHH
Confidence 999987532 33 34 554433 2221 1 3589999999999999999999999 9999999999999999999999
Q ss_pred hhcccc
Q psy15223 1567 ILNGEL 1572 (2492)
Q Consensus 1567 ~~~a~l 1572 (2492)
.+++.+
T Consensus 226 ~l~~~~ 231 (234)
T 1z85_A 226 YIALKK 231 (234)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887654
|
| >1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=284.93 Aligned_cols=140 Identities=23% Similarity=0.307 Sum_probs=127.8
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
.++++||+|++ +. +.+++||||||||||||+||||||+++
T Consensus 3 ~~~~~~v~F~~-~~---------------~~~l~i~TTrP~Tl~g~~aiav~P~~~------------------------ 42 (147)
T 1wka_A 3 PGKLYTLRYEV-EG---------------GGFIEIATVRPETVFADQAIAVHPEDE------------------------ 42 (147)
T ss_dssp -CEEEEEEEEB-TT---------------SCEEEEEESCGGGGGGCCEEEECTTCT------------------------
T ss_pred cceEEEEEEEC-CC---------------CcEEEEEECCceecccceEEEECCCCc------------------------
Confidence 57899999998 42 358999999999999999999999953
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
++ ++|.|++|.||+. ++++||+.++||+++.|||+||+|||||++||++|++||| ++
T Consensus 43 --~~------------~~l~g~~~~~P~~------~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~ 99 (147)
T 1wka_A 43 --RY------------RHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL---KP 99 (147)
T ss_dssp --TT------------GGGTTCEEECTTS------SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC---CC
T ss_pred --hH------------HHhcCCEEECCCC------CCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCC---Cc
Confidence 11 5799999999998 8899999999999999999999999999999999999999 88
Q ss_pred ccccCCCCcccccCCC----CCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 764 INPVMDDGNFISTLPL----FGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
+++||++|+| +.++ |.|+++++|++.|++.|+++|.+++.++|
T Consensus 100 ~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 100 VSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 8999999999 5666 99999999999999999999999998765
|
| >3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=314.23 Aligned_cols=164 Identities=19% Similarity=0.196 Sum_probs=140.0
Q ss_pred CeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCce-----eeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEE
Q psy15223 633 KGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL-----LILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINF 707 (2492)
Q Consensus 633 ~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~-----~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~ 707 (2492)
..+++||||||||||||+||||||+++|+.+...+ ... |++++++++++.++.+.+...+.+++|. |.|++|
T Consensus 37 ~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~ 113 (219)
T 3o0a_A 37 RIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACI--GERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGV-FLGVYA 113 (219)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHH--HHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEE
T ss_pred CCEEEEEECCcchhhcccEEEECCCCcEEEEEecC--CccccchhHHHHHHHHHHHHhhccccceeEEEeeeE-EcCCEE
Confidence 47899999999999999999999999999877543 122 2788999988876554333333678898 999999
Q ss_pred ecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC-------CCccccc----
Q psy15223 708 FHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD-------DGNFIST---- 776 (2492)
Q Consensus 708 ~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~-------~G~~~~~---- 776 (2492)
.|||+ ++.+||+.+|||+++.|||+||+|||||++||++|++||| +++++||+ +|.|+++
T Consensus 114 ~~Pl~------~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L---pi~~vi~~~~~~~~~~g~ft~~g~~~ 184 (219)
T 3o0a_A 114 TNPAN------GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL---PIKVVVKPEGAWDFEKGAYEGKGTLV 184 (219)
T ss_dssp ECTTT------CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSCCCTTTCCCCSCCEEC
T ss_pred ECCCC------CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC---CceeeeCCccccccccccccccceEe
Confidence 99998 8999999999999999999999999999999999999999 77788886 5777765
Q ss_pred -CCCCCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 777 -LPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 777 -~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
.+.|.||++++|++.|++.|+++|.+.+...|
T Consensus 185 ~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 185 NSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp SCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 37899999999999999999999999887655
|
| >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-32 Score=301.75 Aligned_cols=154 Identities=29% Similarity=0.593 Sum_probs=143.7
Q ss_pred ccccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE
Q psy15223 42 LIETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV 121 (2492)
Q Consensus 42 ~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~ 121 (2492)
..++|..||+.|+++|+++...|++|||||||+||+||++|+|......||+.|||++||++|++.++++++. |+||||
T Consensus 12 ~~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~-g~tlYv 90 (179)
T 2nx8_A 12 SLEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLL-DTTLFV 90 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCccc-ceEEEE
Confidence 3456788999999999999888999999999999999999999999999999999999999999998887776 999999
Q ss_pred cCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCccc
Q psy15223 122 TLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVK 196 (2492)
Q Consensus 122 t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~~~ 196 (2492)
|+|||+||++||+|+||+|||||+.+|+.++.|++++++...+++|+++|++|++++||.+|++.||+++|...+
T Consensus 91 TlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~~ 165 (179)
T 2nx8_A 91 TIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKK 165 (179)
T ss_dssp EECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988664443
|
| >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=295.76 Aligned_cols=152 Identities=45% Similarity=0.786 Sum_probs=142.1
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||+.|+++|+++...|+.|||||||+||+||++|+|....+.||+.|||++||++|++.++.+.+. |+|||||+|
T Consensus 8 ~d~~~M~~A~~~A~~a~~~~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~-~~tlYvTlE 86 (168)
T 1z3a_A 8 SHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLI-DATLYVTLE 86 (168)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCccc-ccEEEEcCC
Confidence 5678999999999999877899999999999999999999999889999999999999999998877775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCcccc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKN 197 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~~~~ 197 (2492)
||+||++||+|+||+|||||+.+|+.++.|++++++...+++|++.|++|++++||.+|++.||+++|..++.
T Consensus 87 PC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~~~ 159 (168)
T 1z3a_A 87 PCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKA 159 (168)
T ss_dssp CCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTCC-
T ss_pred CcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887755544
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=309.83 Aligned_cols=173 Identities=19% Similarity=0.178 Sum_probs=143.3
Q ss_pred CCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC-----cCcEEEEEecccccCC
Q psy15223 631 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF-----KGNIIGICKGIKLSKI 705 (2492)
Q Consensus 631 ~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-----~~~~~~~~~G~~l~g~ 705 (2492)
+.+.+++||||||||||||+||||||+++|++++..+ ..+++++++.+.+++..+. +...+.+++|.+|.|+
T Consensus 30 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~ 106 (261)
T 2wfg_A 30 ENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGN---GDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGS 106 (261)
T ss_dssp TSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECST---TEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTC
T ss_pred CCCCEEEEEECCchHHhhhheEEECCCCceEEEEecC---ceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCC
Confidence 4568999999999999999999999999999999854 4577777788877765543 2233489999999999
Q ss_pred EEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHH-------cC-------CCCCCcccccCC--
Q psy15223 706 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-------QN-------MKDSDIINPVMD-- 769 (2492)
Q Consensus 706 ~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~-------~~-------l~~~~~~~~vd~-- 769 (2492)
+|.|||+. ++.+||++++||+++.|||+||+|||||++||.+|++ || | +++++||.
T Consensus 107 ~~~~Pl~~-----~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L---~i~~vId~~~ 178 (261)
T 2wfg_A 107 RIDAPYAV-----NKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQT---DIVPIVHTEK 178 (261)
T ss_dssp EEECTTCS-----SCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCC---CCCCCEEBTT
T ss_pred EEECCCCC-----CceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccC---CceeEEcCcc
Confidence 99999972 4689999999999999999999999999999999999 99 7 67788876
Q ss_pred CC---------------------------------ccccc--CCCCCCcchhhchHHHHHHHHhcCCeeeeeeecccccc
Q psy15223 770 DG---------------------------------NFIST--LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 814 (2492)
Q Consensus 770 ~G---------------------------------~~~~~--~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~ 814 (2492)
+| +|+.. .++|.|+++++|++.|++.|+++|.+.+..+++|+-.|
T Consensus 179 ~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 179 YGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHH 258 (261)
T ss_dssp TBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred cCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecccc
Confidence 33 33333 68899999999999999999999999999999998755
|
| >1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=280.02 Aligned_cols=140 Identities=23% Similarity=0.307 Sum_probs=127.6
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
.++++||+|++ +. +.+++||||||||||||+||||||+++
T Consensus 3 ~~~~~~v~F~~-~~---------------~~~l~i~TTrP~Tl~g~~aiav~P~~~------------------------ 42 (147)
T 1wka_A 3 PGKLYTLRYEV-EG---------------GGFIEIATVRPETVFADQAIAVHPEDE------------------------ 42 (147)
T ss_dssp -CEEEEEEEEB-TT---------------SCEEEEEESCGGGGGGCCEEEECTTCT------------------------
T ss_pred cceEEEEEEEC-CC---------------CcEEEEEECCceecccceEEEECCCCc------------------------
Confidence 57899999998 32 358999999999999999999999953
Q ss_pred HHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCc
Q psy15223 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 1913 (2492)
Q Consensus 1834 ~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~ 1913 (2492)
++ ++|.|++|.||++ ++++||+.++||++++|||+||+|||||++||++|++||| ++
T Consensus 43 --~~------------~~l~g~~~~~P~~------~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L---~~ 99 (147)
T 1wka_A 43 --RY------------RHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL---KP 99 (147)
T ss_dssp --TT------------GGGTTCEEECTTS------SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC---CC
T ss_pred --hH------------HHhcCCEEECCCC------CCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCC---Cc
Confidence 11 3789999999998 8999999999999999999999999999999999999999 99
Q ss_pred ccccCCCCccccCCCC----CCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1914 INPVMDDGNFISTLPL----FGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1914 ~~~vd~~G~~~~~~~~----~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
++++|++|+| ++++ |.|+++++|++.|++.|+++|.+++.+.|
T Consensus 100 ~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 100 VSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999 6776 99999999999999999999999988765
|
| >3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-31 Score=305.79 Aligned_cols=164 Identities=19% Similarity=0.196 Sum_probs=137.2
Q ss_pred ccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCce-----ehhhHHhHHHHHHHcCCcCceEEEEecccccccEE
Q psy15223 1783 KGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLL-----LILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINF 1857 (2492)
Q Consensus 1783 ~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~-----~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~ 1857 (2492)
..+++||||||||||||+||||||+++|+.+...+ ... +++++++++++.++.+.+...+.+++|. |.|++|
T Consensus 37 ~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~ 113 (219)
T 3o0a_A 37 RIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACI--GERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGV-FLGVYA 113 (219)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHH--HHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEE
T ss_pred CCEEEEEECCcchhhcccEEEECCCCcEEEEEecC--CccccchhHHHHHHHHHHHHhhccccceeEEEeeeE-EcCCEE
Confidence 47899999999999999999999999999876542 112 2788888888765433222222568898 999999
Q ss_pred eCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC-------CCccccC----
Q psy15223 1858 FHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD-------DGNFIST---- 1926 (2492)
Q Consensus 1858 ~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~-------~G~~~~~---- 1926 (2492)
.|||+ ++.+||+.+|||++++|||+||+|||||++||++|++||| +++++||+ +|.|+++
T Consensus 114 ~~Pl~------~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L---pi~~vi~~~~~~~~~~g~ft~~g~~~ 184 (219)
T 3o0a_A 114 TNPAN------GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL---PIKVVVKPEGAWDFEKGAYEGKGTLV 184 (219)
T ss_dssp ECTTT------CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCCEECSSCCCTTTCCCCSCCEEC
T ss_pred ECCCC------CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC---CceeeeCCccccccccccccccceEe
Confidence 99999 8999999999999999999999999999999999999999 78888876 4666554
Q ss_pred -CCCCCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1927 -LPLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1927 -~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
++.|.||++++|++.|++.|+++|.+.+...|
T Consensus 185 ~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 185 NSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp SCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 47899999999999999999999999876654
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=294.56 Aligned_cols=169 Identities=21% Similarity=0.179 Sum_probs=139.3
Q ss_pred CCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC------cCcEEEEEecccccC
Q psy15223 631 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF------KGNIIGICKGIKLSK 704 (2492)
Q Consensus 631 ~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~------~~~~~~~~~G~~l~g 704 (2492)
+++++++||||||||||||+||||||+++|++++..+ ++.||+|+++++++..+... ...++.+++|++|.|
T Consensus 77 g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~--ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G 154 (311)
T 3pz6_A 77 NAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINK--DEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLL 154 (311)
T ss_dssp SCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEET--TEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTT
T ss_pred CCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECC--CCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcC
Confidence 4578999999999999999999999999999999843 37899999999997544321 234559999999999
Q ss_pred CEEecCCcccccCCCc-eecEEecCCcccCCCCccEEecCCCCHHHHHHHHH-----------cCC---------CCCCc
Q psy15223 705 INFFHPLSNIDINYNR-LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-----------QNM---------KDSDI 763 (2492)
Q Consensus 705 ~~~~~P~~~~~~~~~~-~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~-----------~~l---------~~~~~ 763 (2492)
++|.|||. ++ .+||++++||++++|||+||+|||||++||.+|++ ||| ++.++
T Consensus 155 ~~~~hPl~------~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipv 228 (311)
T 3pz6_A 155 ATVRAPLS------PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPI 228 (311)
T ss_dssp CEEECTTC------SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCC
T ss_pred CEEECCCC------CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEE
Confidence 99999998 54 89999999999999999999999999999997766 775 33333
Q ss_pred cccc--------------------C----------------CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeee
Q psy15223 764 INPV--------------------M----------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 807 (2492)
Q Consensus 764 ~~~v--------------------d----------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 807 (2492)
|.+- | .+|.|. .+.|+|++|.+|++.|.+.|.+.|..+...+
T Consensus 229 I~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 229 IEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp EEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEHHHHHHHHHHHHHHCCCceEEcc
Confidence 3310 1 035554 4789999999999999999999999877655
Q ss_pred ec
Q psy15223 808 FE 809 (2492)
Q Consensus 808 ~~ 809 (2492)
.+
T Consensus 307 pe 308 (311)
T 3pz6_A 307 PE 308 (311)
T ss_dssp C-
T ss_pred cc
Confidence 43
|
| >2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-30 Score=305.69 Aligned_cols=173 Identities=19% Similarity=0.177 Sum_probs=140.3
Q ss_pred CCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC----cCceE-EEEeccccccc
Q psy15223 1781 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF----KGNII-GICKGIKLSKI 1855 (2492)
Q Consensus 1781 ~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~----~~~~v-~~~~G~~l~g~ 1855 (2492)
+.+.+++||||||||||||+||||||+++|++++..+ ..++++.++...+++..+. ....+ .+++|.+|.|+
T Consensus 30 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~ 106 (261)
T 2wfg_A 30 ENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGN---GDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGS 106 (261)
T ss_dssp TSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECST---TEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTC
T ss_pred CCCCEEEEEECCchHHhhhheEEECCCCceEEEEecC---ceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCC
Confidence 3568999999999999999999999999999999753 3456666676766654442 12233 89999999999
Q ss_pred EEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHH-------cC-------CCCCCcccccCC--
Q psy15223 1856 NFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-------QN-------MKDSDIINPVMD-- 1919 (2492)
Q Consensus 1856 ~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~-------~~-------l~~~~~~~~vd~-- 1919 (2492)
+|.||++. ++.+||++++||++++|||+||+|||||++||++|++ || | +++++||.
T Consensus 107 ~~~~Pl~~-----~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L---~i~~vId~~~ 178 (261)
T 2wfg_A 107 RIDAPYAV-----NKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQT---DIVPIVHTEK 178 (261)
T ss_dssp EEECTTCS-----SCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCC---CCCCCEEBTT
T ss_pred EEECCCCC-----CceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccC---CceeEEcCcc
Confidence 99999972 4689999999999999999999999999999999999 99 7 77777765
Q ss_pred CCc---------------------------------cccC--CCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccc
Q psy15223 1920 DGN---------------------------------FIST--LPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 1964 (2492)
Q Consensus 1920 ~G~---------------------------------~~~~--~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~ 1964 (2492)
+|. |+.. +++|.|+++++|++.|++.|+++|.+....+++|+-.|
T Consensus 179 ~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 179 YGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHH 258 (261)
T ss_dssp TBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred cCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecccc
Confidence 333 2222 68899999999999999999999999999999998654
|
| >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-31 Score=288.42 Aligned_cols=149 Identities=40% Similarity=0.705 Sum_probs=140.2
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||..|+++|+++...+++|||||||+||+||++|+|....+.|++.|||++||++|++.++.+.+. |+|||||+|
T Consensus 6 ~d~~~m~~A~~~A~~a~~~~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~-~~tlyvT~E 84 (159)
T 2b3j_A 6 NDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLE-GCTLYVTLE 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcc-eeEEEECCC
Confidence 5677999999999999888999999999999999999999998888999999999999999988877775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 194 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~ 194 (2492)
||+||++||+|+||+||||++.+|+.++.|++++++...+++++++|++|++++||.+|++.||.++|..
T Consensus 85 PC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~ 154 (159)
T 2b3j_A 85 PCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRAN 154 (159)
T ss_dssp CCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887644
|
| >2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-30 Score=296.07 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=136.6
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
-+++++|+|++.+ .+.+++||||||||||||+||||||+++|+.+...+ +++++.+
T Consensus 9 ~~~g~~v~F~~~~---------------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~---------~~~~~~~ 64 (196)
T 2ajg_A 9 MGEGVEITFNVND---------------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAF 64 (196)
T ss_dssp --CEEEEEEEBTT---------------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT---------CHHHHHH
T ss_pred cCceEEEEEEeCC---------------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC---------HHHHHHH
Confidence 3689999999853 246899999999999999999999999998764322 2334444
Q ss_pred HHHcC----CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCC
Q psy15223 684 LKKFG----FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 759 (2492)
Q Consensus 684 ~~~~~----~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~ 759 (2492)
.++.+ .+...+...+|.+|.|++|.|||+ ++.+||+.++||+++.|||+||+|||||++||++|++|||
T Consensus 65 ~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~------~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L- 137 (196)
T 2ajg_A 65 IDECRNTKVAEAEMATMEKKGVDTGFKAVHPLT------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL- 137 (196)
T ss_dssp HHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTT------CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTC-
T ss_pred HHHhhcccccceEEEeeeeCCEEcCCEEECCCC------CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCC-
Confidence 43322 122222233444899999999998 8899999999999999999999999999999999999999
Q ss_pred CCCcccccC---------CCCcccccC-----CCCCCcchhhchHHHHHHHHhcCCeee
Q psy15223 760 DSDIINPVM---------DDGNFISTL-----PLFGGMSIWKASKLICSYLKKSKTLFN 804 (2492)
Q Consensus 760 ~~~~~~~vd---------~~G~~~~~~-----~~~~G~~v~~a~~~i~~~L~~~g~l~~ 804 (2492)
+++++|| ++|+|+++. ++|.|+++++|++.|++.|+++|.+.+
T Consensus 138 --~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 138 --NIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp --CCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred --CceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 7778896 588888765 679999999999999999999998765
|
| >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-31 Score=293.74 Aligned_cols=153 Identities=29% Similarity=0.491 Sum_probs=130.2
Q ss_pred cccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC------cccCCC
Q psy15223 43 IETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN------YRFSKN 116 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~------~~l~~~ 116 (2492)
..+|..||+.|+++|+++...+++|||||||+||+||++|+|++....|++.|||++||++|++.... +.+ .|
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l-~g 101 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVF-EH 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHH-TT
T ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccccccc-CC
Confidence 34678899999999999988899999999999999999999998888899999999999999875322 124 49
Q ss_pred eEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhc--CCCceeEEeccccHHHHHHHHHHHHHhccCc
Q psy15223 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK--KLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 194 (2492)
Q Consensus 117 ~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~--~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~ 194 (2492)
||||||+|||+||++||+|+||+|||||+.+|+.|+.|+.+.++... ..+|+++|++|++++||.+|++.||+++++.
T Consensus 102 ~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~~~~~ 181 (189)
T 3dh1_A 102 TVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPN 181 (189)
T ss_dssp EEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC----
T ss_pred eEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888877666432 3456799999999999999999999886554
Q ss_pred cc
Q psy15223 195 VK 196 (2492)
Q Consensus 195 ~~ 196 (2492)
.+
T Consensus 182 ~P 183 (189)
T 3dh1_A 182 AP 183 (189)
T ss_dssp --
T ss_pred CC
Confidence 44
|
| >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-30 Score=282.47 Aligned_cols=148 Identities=36% Similarity=0.546 Sum_probs=139.1
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||..|+++|+++...+++|||||||+||+||++|+|....+.||+.|||++||++|++.++.+.+. |+|||||+|
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~-~~tlYvT~E 100 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLE-GCELYVTLE 100 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCT-TEEEEESSC
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccC-ceEEEECCC
Confidence 3567999999999999888999999999999999999999999999999999999999999988777775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNF 194 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~ 194 (2492)
||+||++||+|+||+||||++.+|+.++.|++++++...+++++++|++ ++++||.+|++.||+++|..
T Consensus 101 PC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~~ 169 (171)
T 1wwr_A 101 PCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRNN 169 (171)
T ss_dssp CBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 99999999999999987744
|
| >2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=288.36 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=133.7
Q ss_pred ecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHH
Q psy15223 1754 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833 (2492)
Q Consensus 1754 ~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 1833 (2492)
..++++|+|++.+ .+.+++||||||||||||+||||||+++|+++...+ +++++.+
T Consensus 9 ~~~g~~v~F~~~~---------------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~---------~~~~~~~ 64 (196)
T 2ajg_A 9 MGEGVEITFNVND---------------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN---------NPELAAF 64 (196)
T ss_dssp --CEEEEEEEBTT---------------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT---------CHHHHHH
T ss_pred cCceEEEEEEeCC---------------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC---------HHHHHHH
Confidence 3689999999843 246899999999999999999999999998764221 1223333
Q ss_pred HHHcCCc---CceE-EEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCC
Q psy15223 1834 LKKFGFK---GNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMK 1909 (2492)
Q Consensus 1834 ~~~~~~~---~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~ 1909 (2492)
.++.+.. ...+ ...+|..|.|++|.||++ ++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 65 ~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~------~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L- 137 (196)
T 2ajg_A 65 IDECRNTKVAEAEMATMEKKGVDTGFKAVHPLT------GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGL- 137 (196)
T ss_dssp HHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTT------CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTC-
T ss_pred HHHhhcccccceEEEeeeeCCEEcCCEEECCCC------CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCC-
Confidence 3322110 1122 223344899999999998 8899999999999999999999999999999999999999
Q ss_pred CCCcccccC---------CCCccccCC-----CCCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1910 DSDIINPVM---------DDGNFISTL-----PLFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1910 ~~~~~~~vd---------~~G~~~~~~-----~~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
+++++|| ++|.|+++. ++|.|+++++|++.|++.|+++|.+.+
T Consensus 138 --~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 138 --NIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp --CCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred --CceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 8888885 477777653 679999999999999999999998754
|
| >3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=288.39 Aligned_cols=169 Identities=20% Similarity=0.156 Sum_probs=139.4
Q ss_pred CCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC-----cCceE-EEEecccccc
Q psy15223 1781 SGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF-----KGNII-GICKGIKLSK 1854 (2492)
Q Consensus 1781 ~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-----~~~~v-~~~~G~~l~g 1854 (2492)
+.+++++||||||||||||+||||||+.+|++++..+ ++.+|+|+++++++...... ..+.+ .+++|++|.|
T Consensus 77 g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~--ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G 154 (311)
T 3pz6_A 77 NAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINK--DEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLL 154 (311)
T ss_dssp SCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEET--TEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTT
T ss_pred CCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECC--CCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcC
Confidence 3578999999999999999999999999999999853 37899999999987533211 23444 8999999999
Q ss_pred cEEeCCCCccccCCCc-eecEEecCccccCCCCceEEcCCCCChhhHHHHHH-----------cCC---------CCCCc
Q psy15223 1855 INFFHPLSNIDINYNR-LSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKK-----------QNM---------KDSDI 1913 (2492)
Q Consensus 1855 ~~~~~Pl~~~~~~~~~-~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~-----------~~l---------~~~~~ 1913 (2492)
++|.|||+ ++ .+||++++||++++|||+||+|||||++||.++++ ||+ ++.++
T Consensus 155 ~~~~hPl~------~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipv 228 (311)
T 3pz6_A 155 ATVRAPLS------PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPI 228 (311)
T ss_dssp CEEECTTC------SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCC
T ss_pred CEEECCCC------CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEE
Confidence 99999998 64 89999999999999999999999999999996655 775 33344
Q ss_pred cccc--------------------C----------------CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeee
Q psy15223 1914 INPV--------------------M----------------DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 1957 (2492)
Q Consensus 1914 ~~~v--------------------d----------------~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 1957 (2492)
+.+- | .+|.|. .+.|+|++|.+|++.|++.|.++|....+.+
T Consensus 229 I~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 229 IEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp EEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEHHHHHHHHHHHHHHCCCceEEcc
Confidence 4310 1 146766 5899999999999999999999999887766
Q ss_pred ec
Q psy15223 1958 FE 1959 (2492)
Q Consensus 1958 ~~ 1959 (2492)
.+
T Consensus 307 pe 308 (311)
T 3pz6_A 307 PE 308 (311)
T ss_dssp C-
T ss_pred cc
Confidence 54
|
| >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-30 Score=276.48 Aligned_cols=142 Identities=35% Similarity=0.536 Sum_probs=122.5
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||+.|+++|+++...+++|||||||+||+||++|+|....+.||+.|||++||++|++.++.+.+. |+|||||+|
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~-~~tly~T~e 81 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLP-GADLYVTLE 81 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCT-TCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccC-CeEEEECCC
Confidence 5677999999999999888899999999999999999999999889999999999999999988777775 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHH
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 187 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~ 187 (2492)
||+||++||+|+||+||||+..+|+.++.|++++++...+++++++|++|++++||.+||+.|
T Consensus 82 PC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 82 PCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred ChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999876
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=290.46 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=142.6
Q ss_pred EEEeccCchh-hHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1760 VGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1760 v~f~~~~~~~-~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
|+|++.++.. ....++ +.+.+++||||||||||||+||||||+++|++++..+ ++.+|+++.+++.+..+-.
T Consensus 10 ikf~v~~~~~~~~~~~~-----~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~--~~~~i~a~~~~~~~~~~~~ 82 (252)
T 2wfd_A 10 LKLKVLEPYPSKLSGLK-----GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVN--GDIFICTQKAARNMSYQGF 82 (252)
T ss_dssp EEEEEESSCCGGGGGGT-----TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTT--SCEEEECHHHHHHHHTTTS
T ss_pred EEEEccCcchhhhhhcc-----CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecC--CcEEEEhhhhHHHHHHHHh
Confidence 6787654321 111221 3468999999999999999999999999999998742 2678999888776532210
Q ss_pred ---CcCc-eEEEEecccccccEEeCCCCccccCCC-ceecEEecCccccCCCCceEEcCCCCChhhHH----------HH
Q psy15223 1839 ---FKGN-IIGICKGIKLSKINFFHPLSNIDINYN-RLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL----------IF 1903 (2492)
Q Consensus 1839 ---~~~~-~v~~~~G~~l~g~~~~~Pl~~~~~~~~-~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~----------~~ 1903 (2492)
.... .+.+++|.+|.|++|.||++ + +.+||++++||++++|||+||+|||||++||+ ++
T Consensus 83 ~~~~~~~~~~~~~~G~~l~G~~~~~Pl~------~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa 156 (252)
T 2wfd_A 83 TKDNGVVPVVKELMGEEILGASLSAPLT------SYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALR 156 (252)
T ss_dssp SSSTTCCCEEEECCHHHHTTCEEECSSC------SSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHH
T ss_pred hccCcccEEEEEEEcccccCCEEEcCCC------CCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHH
Confidence 0223 34899999999999999998 6 57999999999999999999999999999999 58
Q ss_pred HHcCCCCC-----CcccccC----------------------C-----------------CCccccCCCCCCCccHHhhh
Q psy15223 1904 KKQNMKDS-----DIINPVM----------------------D-----------------DGNFISTLPLFGGMSIWKAS 1939 (2492)
Q Consensus 1904 ~~~~l~~~-----~~~~~vd----------------------~-----------------~G~~~~~~~~~~G~~v~~a~ 1939 (2492)
++|||+.+ +++.+++ + +|+|+ +++|.|+++++|+
T Consensus 157 ~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~ 234 (252)
T 2wfd_A 157 AKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVK 234 (252)
T ss_dssp HTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHH
T ss_pred HHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHH
Confidence 88999521 1222221 1 58887 7899999999999
Q ss_pred HHHHHHHHhcCCcceee
Q psy15223 1940 KLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1940 ~~i~~~L~~~g~l~~~~ 1956 (2492)
+.|++.|+++|.+..+.
T Consensus 235 ~~Ii~~L~~~g~~~~~~ 251 (252)
T 2wfd_A 235 KTIQKKMIDAGDALIYM 251 (252)
T ss_dssp HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCcccc
Confidence 99999999999886653
|
| >2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=288.25 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=144.4
Q ss_pred EEEeecCCchh-hhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHc
Q psy15223 609 YVGFSFSEPEK-IKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKF 687 (2492)
Q Consensus 609 yv~f~~~~~~~-~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~ 687 (2492)
-|+|++.+... ....+ .+.+.+++||||||||||||+||||||+++|+.++..+ ++.||+|+.+.+.+..+-
T Consensus 9 ~ikf~v~~~~~~~~~~~-----~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~--~~~~i~a~~~~~~~~~~~ 81 (252)
T 2wfd_A 9 LLKLKVLEPYPSKLSGL-----KGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVN--GDIFICTQKAARNMSYQG 81 (252)
T ss_dssp EEEEEEESSCCGGGGGG-----TTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTT--SCEEEECHHHHHHHHTTT
T ss_pred EEEEEccCcchhhhhhc-----cCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecC--CcEEEEhhhhHHHHHHHH
Confidence 37888755321 11112 24568999999999999999999999999999998733 268999999888764331
Q ss_pred C----CcCcEEEEEecccccCCEEecCCcccccCCC-ceecEEecCCcccCCCCccEEecCCCCHHHHHH----------
Q psy15223 688 G----FKGNIIGICKGIKLSKINFFHPLSNIDINYN-RLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLI---------- 752 (2492)
Q Consensus 688 ~----~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~-~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~---------- 752 (2492)
. .+...+.+++|.+|.|++|.||++ + +.+||++++||+++.|||+||+|||||++||.+
T Consensus 82 ~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~------~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~f 155 (252)
T 2wfd_A 82 FTKDNGVVPVVKELMGEEILGASLSAPLT------SYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQAL 155 (252)
T ss_dssp SSSSTTCCCEEEECCHHHHTTCEEECSSC------SSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHH
T ss_pred hhccCcccEEEEEEEcccccCCEEEcCCC------CCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhH
Confidence 0 122345899999999999999998 5 579999999999999999999999999999995
Q ss_pred HHHcCCCCC-----CcccccC----------------------C-----------------CCcccccCCCCCCcchhhc
Q psy15223 753 FKKQNMKDS-----DIINPVM----------------------D-----------------DGNFISTLPLFGGMSIWKA 788 (2492)
Q Consensus 753 ~~~~~l~~~-----~~~~~vd----------------------~-----------------~G~~~~~~~~~~G~~v~~a 788 (2492)
|++|||+.+ +++.+|+ + +|+|+ .++|+|+++++|
T Consensus 156 a~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA 233 (252)
T 2wfd_A 156 RAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDV 233 (252)
T ss_dssp HHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHH
T ss_pred HHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHH
Confidence 788999621 1222221 1 58887 689999999999
Q ss_pred hHHHHHHHHhcCCeeee
Q psy15223 789 SKLICSYLKKSKTLFNI 805 (2492)
Q Consensus 789 ~~~i~~~L~~~g~l~~~ 805 (2492)
++.|++.|+++|.+...
T Consensus 234 ~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 234 KKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCccc
Confidence 99999999999998764
|
| >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-29 Score=278.81 Aligned_cols=145 Identities=29% Similarity=0.429 Sum_probs=131.1
Q ss_pred cCCCCCCCcccccccccccC-CcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcC
Q psy15223 45 TDSPYLSPIPHRAKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTL 123 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~-~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~ 123 (2492)
.|..||+.|+++|+++...+ ++|||||||+||+||++|+|....+.||+.|||++||++|++.++++++. |+|||||+
T Consensus 10 ~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~-g~tlYvT~ 88 (164)
T 1wkq_A 10 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD-DCILYTSC 88 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCT-TEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcC-ceEEEEeC
Confidence 45669999999999998888 99999999999999999999999889999999999999999998887876 99999999
Q ss_pred CChHhHHHHHHHhCCceEEEecCCCCCCccc----hhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhc
Q psy15223 124 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKR 191 (2492)
Q Consensus 124 EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g----~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~ 191 (2492)
|||+||++||+|+||+|||||..+++.++.| +.++++.....++.+.+ .|++++||.+||+.||++.
T Consensus 89 EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~ 159 (164)
T 1wkq_A 89 EPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFA 159 (164)
T ss_dssp CCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCT
T ss_pred CChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988888 77777766555666655 7899999999999999764
|
| >2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-28 Score=276.82 Aligned_cols=146 Identities=22% Similarity=0.377 Sum_probs=127.8
Q ss_pred ccccCCCCCCCcccccccccccCCcceeeeeee-C-CEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccC----C
Q psy15223 42 LIETDSPYLSPIPHRAKLALIAGEVPVGAVLVK-N-NLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS----K 115 (2492)
Q Consensus 42 ~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv~-~-~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~----~ 115 (2492)
...+|..||+.|+++|+++...++.|||||||+ | |+||++|+|++....|++.|||++||++|++.+++++|. +
T Consensus 24 ~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~ 103 (197)
T 2g84_A 24 VLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLP 103 (197)
T ss_dssp BCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSC
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcC
Confidence 345678899999999999986668999999996 8 999999999999889999999999999999988877764 4
Q ss_pred CeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccc--------hhhhHHhhcCCCceeEEeccccHHHHHHHHHHH
Q psy15223 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG--------SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 187 (2492)
Q Consensus 116 ~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g--------~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~ 187 (2492)
|+|||||+|||+||++||+|+||+|||||+.+|+.++.| .+...+.+.+ ++|++|++++||.+|++.|
T Consensus 104 g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~----i~V~~gvl~~e~~~ll~~f 179 (197)
T 2g84_A 104 ACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARG----ITVTTGLLRDAACALLREY 179 (197)
T ss_dssp CEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTT----CEEECCTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCC----CEEEecCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999887766 3444455554 4599999999999999999
Q ss_pred HHhc
Q psy15223 188 FIKR 191 (2492)
Q Consensus 188 ~~~~ 191 (2492)
|.+.
T Consensus 180 ~~~~ 183 (197)
T 2g84_A 180 NACN 183 (197)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9863
|
| >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-27 Score=257.87 Aligned_cols=141 Identities=27% Similarity=0.432 Sum_probs=122.5
Q ss_pred ccccCCCCCCCcccccccccccCCcceeeeee--eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEE
Q psy15223 42 LIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKI 119 (2492)
Q Consensus 42 ~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv--~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~l 119 (2492)
...+|..||..|+++|+++...+++||||||| +||+||++|+|......||+.|||++||++|++.. ...+ +|+||
T Consensus 10 ~~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~-~~~~-~~~tl 87 (161)
T 1p6o_A 10 ASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLE-GKVY-KDTTL 87 (161)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCC-HHHH-TTEEE
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhC-Cccc-ccccc
Confidence 34567789999999999998888999999999 79999999999998888999999999999998741 2234 49999
Q ss_pred EEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhcc
Q psy15223 120 YVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 192 (2492)
Q Consensus 120 y~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~ 192 (2492)
|||+|||+||++||+|+||+|||||..+++.| ++..++.+.++. |.. ++++||.+|++.||+++|
T Consensus 88 YvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~~l~~~gi~----v~~-~~~~e~~~l~~~f~~~~r 152 (161)
T 1p6o_A 88 YTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKYLQTRGHE----VVV-VDDERCKKIMKQFIDERP 152 (161)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHHHHHTTCE----EEE-CCCHHHHHHHHHHHHHCH
T ss_pred ccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHHHHHhcCCE----EEE-ecHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999988754 567888876654 665 899999999999998754
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=264.60 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=143.7
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCce-EEEEeeEE-EcCCC--ccccccCCCccCcchhhhhcChhhHHHHhhcc
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFV-VDSKG--KKMSKSKGNIIKPQKLCNLFGAEILRLWVAST 1048 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~hG~v-ld~~G--~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~ 1048 (2492)
-+|+.|.||+ +||+++. .+....|..|.+ .++.|||| ++.+| +|||||+||+|+|.|+++++|+|++|||+++.
T Consensus 238 ~Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~ 315 (464)
T 3fnr_A 238 CINIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK 315 (464)
T ss_dssp EEEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS
T ss_pred EEEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc
Confidence 3789999999 7999854 444445555655 78999999 66666 49999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHH---------HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy15223 1049 DYSKDLSISNEILNRVV---------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHY 1119 (2492)
Q Consensus 1049 ~~~~d~~fs~~~l~~~~---------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~ 1119 (2492)
++.+|++|+++.+.+.. .++.|+++++|... ..++++.. .+...+...|++++.++.++.+.+.+++
T Consensus 316 ~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--~~~~~~~~--~~~~~L~~~e~~Ll~~L~~~~~~v~~a~ 391 (464)
T 3fnr_A 316 KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--KKIDDVMK--ADLQSLNQDGVNLLFEALNLKAVLNDAF 391 (464)
T ss_dssp CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT--CCTTTSTT--CCCTTCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh--ccCCCccc--cChhhCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875432 25788999988752 22222211 1223344459999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHHHHHHHHHHhcccch
Q psy15223 1120 RMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWHINQSLLRLISPILS 1184 (2492)
Q Consensus 1120 ~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~-~~~r~sa~~~L~~il~~l~~lLaPilP 1184 (2492)
++|+|+++++.|++++ ..+++||-+. +....+.+ ...|....... +|+..+.||.-=.|
T Consensus 392 ~~~ep~~i~~yL~~La-~~~n~fY~~~---~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 392 EARALQKIPDYLKNLA-ANFHKFYNEN---KVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHTCTTHHHHHHHHHH-HHHHHHHHHC---CCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HcCCHHHHHHHHHHHH-HHHHHHHHhC---cCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 9999999999999999 5899988652 22221111 12233322222 67777777755444
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-24 Score=283.99 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=118.7
Q ss_pred eEEEEeeEEEcCCCccccccCCCccCcchhhhh-------------------------cChhhHHHHhhccCcccccccC
Q psy15223 1003 KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-------------------------FGAEILRLWVASTDYSKDLSIS 1057 (2492)
Q Consensus 1003 k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~-------------------------yGaD~lRl~l~s~~~~~d~~fs 1057 (2492)
-.++.||||. .+|+|||||+||+|+|+|++++ +|+|++||++++..+.+|++|+
T Consensus 380 ~~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd 458 (592)
T 1iq0_A 380 AHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFR 458 (592)
T ss_dssp EEEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEEC
T ss_pred EEEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeec
Confidence 4578899998 6899999999999999999999 9999999999998889999999
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q psy15223 1058 NEILNRVV--------ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVS 1129 (2492)
Q Consensus 1058 ~~~l~~~~--------~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~ 1129 (2492)
++.+.... .++.|+.+.++.... .. .+ + .....+.++.++..+.++.+.+.+++++++++.+++
T Consensus 459 ~d~~~~~~~~~~~ylqya~aR~~sil~k~~~--~~-~~--~---~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~ 530 (592)
T 1iq0_A 459 YQEALSFEGDTGPYVQYAHARAHSILRKAGE--WG-AP--D---LSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQ 530 (592)
T ss_dssp HHHHHCSSSSSHHHHHHHHHHHHHHHHHHCC--CC-CC--C---GGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhcc--cC-CC--c---cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99885432 234566666654311 11 01 1 111245577788899999999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHhhhh-----hhccccCC-hHHHHHHHHHHHHHHHHHHHHhccc
Q psy15223 1130 KLQIYCSEDLGSFYLDILKD-----RLYTTKKN-SHARRSAQTSIWHINQSLLRLISPI 1182 (2492)
Q Consensus 1130 ~l~~f~~~~ls~~Yl~~~Kd-----rl~~~~~~-~~~r~sa~~~L~~il~~l~~lLaPi 1182 (2492)
.+++++ ..++.|| +..++ +....+.. ...|.........+|...+.+|.-=
T Consensus 531 yl~~La-~~fn~fy-~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~ 587 (592)
T 1iq0_A 531 YLLDLA-ASWNAYY-NARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIP 587 (592)
T ss_dssp HHHHHH-HHHHHHH-HCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH-HHHHHHH-HhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999998 4565555 54543 33332211 2345555566677777777777643
|
| >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=274.31 Aligned_cols=180 Identities=23% Similarity=0.338 Sum_probs=147.8
Q ss_pred cCCCCCCCcccccccccc--cCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc
Q psy15223 45 TDSPYLSPIPHRAKLALI--AGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT 122 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~--~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t 122 (2492)
.|..||+.|+++|+++.. .+++|||||||+||+||++|+|... ++.|||++||++|++.+ +|||||||
T Consensus 13 ~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----~~~HAE~~Ai~~a~~~~------~g~tlyvT 82 (373)
T 2b3z_A 13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKY----GEAHAEVHAIHMAGAHA------EGADIYVT 82 (373)
T ss_dssp CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCST----TSCCHHHHHHHHHGGGG------TTCEEEES
T ss_pred hHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCCC----CCcCHHHHHHHHhhHhc------CCeEEEEe
Confidence 456799999999999864 6899999999999999999999874 48999999999997642 49999999
Q ss_pred CCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccC
Q psy15223 123 LEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRN 193 (2492)
Q Consensus 123 ~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~ 193 (2492)
+||| |||++||+++||+|||||+.||+.++.|++++++++.++. |..|++++||.+|++.||++ +||
T Consensus 83 lePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~----v~~g~l~~e~~~l~~~f~~~~~~~rP 158 (373)
T 2b3z_A 83 LEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE----VREGILADQAERLNEKFLHFMRTGLP 158 (373)
T ss_dssp SCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCE----EEECTTHHHHHHHTHHHHHHHHHSSC
T ss_pred CCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeE----EEeCCcccccccccceeeeeccccch
Confidence 9999 8999999999999999999999999999999999987765 88999999999999999965 789
Q ss_pred cccccccccccccccccccccCCcEEEeCcchhhH-HHHHhhcCCCEEEEE
Q psy15223 194 FVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNH-LNVLRVKYKNTIILF 243 (2492)
Q Consensus 194 ~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~H-l~VlR~~~gd~i~v~ 243 (2492)
+++.|.|. ++ .-|+... .|..-.+++++.+. .+-+|.. .|.|.+.
T Consensus 159 ~V~lk~A~-SL-DG~Ia~~--~G~~~Wit~~~~~~~~~~lr~~-~daILvG 204 (373)
T 2b3z_A 159 YVTLKAAA-SL-DGKIATS--TGDSKWITSEAARQDAQQYRKT-HQSILVG 204 (373)
T ss_dssp EEEEEEEE-ET-TSBSSCT--TSCCTTSSCHHHHHHHTTHHHH-SSEEEEE
T ss_pred hheeeeee-cC-CCceecc--CCCccccCCHHHHHHHHHHHHH-CCEEEEC
Confidence 99999988 32 3344322 23333456555554 3767765 5666654
|
| >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=276.15 Aligned_cols=182 Identities=24% Similarity=0.362 Sum_probs=150.6
Q ss_pred cccCCCCCCCccccccccc--ccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEE
Q psy15223 43 IETDSPYLSPIPHRAKLAL--IAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIY 120 (2492)
Q Consensus 43 ~etD~~~M~~a~~~a~~~~--~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly 120 (2492)
.+.|..||+.|+++|+++. .++++|||||||+||+||++|+|... ++.|||++||++|++.. +|||||
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----g~~HAE~~Ai~~a~~~~------~g~tly 96 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRA----GEPHAEVHALRMAGEKA------KGATAY 96 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCT----TSCCHHHHHHHHHGGGG------GSSCEE
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCCC----CccHHHHHHHHHhhHhc------CCeEEE
Confidence 4578889999999999986 46899999999999999999999874 48999999999997653 489999
Q ss_pred EcCCCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---c
Q psy15223 121 VTLEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---R 191 (2492)
Q Consensus 121 ~t~EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~ 191 (2492)
||+||| |||++||+|+||+|||||..+|+..+.|.++.+|++.|+. |..|++++||.+|++.|+++ +
T Consensus 97 vt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi~----v~~g~l~~e~~~l~~~f~~~~~~~ 172 (402)
T 2g6v_A 97 VTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID----VSHGLMMSEAEQLNKGFLKRMRTG 172 (402)
T ss_dssp ESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCC----EEECTTTTHHHHHTHHHHHHHHSS
T ss_pred EeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCcE----EEeCCcchhhHHHhhhhhhccccc
Confidence 999999 7999999999999999999999998889899999998887 88899999999999999976 7
Q ss_pred cCcccccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 192 RNFVKNKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 192 ~~~~~~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
||+++.|.|. ++ .-|+..+ .|..-.+++++++.. +-+|.+. |.|.+.
T Consensus 173 rP~V~~k~A~-SL-DG~IA~~--~G~s~Wit~~~~r~~~~~lra~~-DAILvG 220 (402)
T 2g6v_A 173 FPYIQLKLGA-SL-DGRTAMA--SGESQWITSPQARRDVQLLRAQS-HAILTS 220 (402)
T ss_dssp SCEEEEEEEE-CT-TCBBCC-----CCSCSSCHHHHHHHHHHHHHC-SEEEEE
T ss_pred cchheeeeee-cC-CCCCccC--CCCcCCcCCHHHHHHHHHHHHhC-CEEEEC
Confidence 8999999988 32 3344332 333345677776665 8888774 455543
|
| >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-24 Score=267.75 Aligned_cols=178 Identities=24% Similarity=0.379 Sum_probs=144.0
Q ss_pred CCCCCcccccccccc--cCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCC
Q psy15223 48 PYLSPIPHRAKLALI--AGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEP 125 (2492)
Q Consensus 48 ~~M~~a~~~a~~~~~--~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EP 125 (2492)
.||+.|+++|+++.. .+++|||||||+||+||++|+|... ++.|||++||++|++.. ..+ .|||||||+||
T Consensus 16 ~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----~~~HAE~~Ai~~a~~~~--~~~-~g~tlYvTlEP 88 (360)
T 2hxv_A 16 TFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYF----GGPHAERMAIESARKKG--EDL-RGATLIVTLEP 88 (360)
T ss_dssp HHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCST----TSCCHHHHHHHHHHHTT--CCC-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCCC----CCcCHHHHHHHHHHhcC--CCc-CCcEEEEecCc
Confidence 389999999999864 4799999999999999999999874 48999999999997532 244 49999999999
Q ss_pred h------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHh---ccCccc
Q psy15223 126 C------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK---RRNFVK 196 (2492)
Q Consensus 126 C------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~---~~~~~~ 196 (2492)
| |||++||+++||+|||||+.+|+. +.|++++++++.|+. |..|++++||.+|++.||++ +||+++
T Consensus 89 C~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~----v~~g~l~~e~~~l~~~f~~~~~~~rP~V~ 163 (360)
T 2hxv_A 89 CDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIE----VIEGVLEEEVKKLCEFFITYVTKKRPFVA 163 (360)
T ss_dssp CCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCE----EEECTTHHHHHHHTHHHHHHHHHSSCEEE
T ss_pred ccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcE----EEECCccccchhccceeeeccccchhhhe
Confidence 9 799999999999999999999998 888899999887765 88899999999999999965 789999
Q ss_pred ccccccccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEE
Q psy15223 197 NKSINIKMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILF 243 (2492)
Q Consensus 197 ~~~a~m~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~ 243 (2492)
.|.|. ++ .-|+..+ .|..-.++ ++.+.. +-+|.+. |.|.+.
T Consensus 164 lk~A~-SL-DG~IA~~--~G~s~Wit-~~~~~~~~~lr~~~-DAILvG 205 (360)
T 2hxv_A 164 LKYAS-TL-DGKIADH--RGDSKWIT-DKLRFKVHEMRNIY-SAVLVG 205 (360)
T ss_dssp EEEEE-ET-TSEEECT--TSCCTTSC-STTHHHHHHHHHHS-SEEEEE
T ss_pred eehhh-cc-CCcccCC--CCCcccCC-HHHHHHHHHHHHHC-CEEEEC
Confidence 99988 32 3344332 23223345 555544 8888774 455543
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=254.18 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=127.6
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCcccc-EEEEeeeE-EcCCC--ceeeeccCCccCcchhhhccChhHHHHHHhccC
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFV-VDSKG--KKMSKSKGNIIKPQKLCNLFGAEILRLWVASTD 2199 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk-~v~~hG~v-ld~~G--~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~~ 2199 (2492)
+|+.|.||+ +||.++. .++...|..|.+ .++.|||| ++.+| +|||||+||+|+|.++++++|+|++|||+++.+
T Consensus 239 Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp EEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred EEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 789999999 7998854 444444555555 68899999 65666 599999999999999999999999999999988
Q ss_pred CCCcccccHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2200 YSKDLSISNEILNRV---------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYR 2270 (2492)
Q Consensus 2200 ~~~d~~fs~~~l~~~---------~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e 2270 (2492)
+.+|++|+++.+.+. ...+.|+.++++.... .++.+.. .....+...|++++.++.++.+.+.++++
T Consensus 317 ~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~--~~~~~~~--~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~ 392 (464)
T 3fnr_A 317 CDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK--KIDDVMK--ADLQSLNQDGVNLLFEALNLKAVLNDAFE 392 (464)
T ss_dssp TTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC--CTTTSTT--CCCTTCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc--cCCCccc--cChhhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887432 2357788888887521 2222211 11223444599999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhhhhHHH
Q psy15223 2271 MYEFHMIVSKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2271 ~~~f~~a~~~l~~f~~~~ls~~Yle 2295 (2492)
+++|+.+++.+++++ ..+++||-+
T Consensus 393 ~~ep~~i~~yL~~La-~~~n~fY~~ 416 (464)
T 3fnr_A 393 ARALQKIPDYLKNLA-ANFHKFYNE 416 (464)
T ss_dssp HTCTTHHHHHHHHHH-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHHHHHHHh
Confidence 999999999999998 588888864
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=258.98 Aligned_cols=204 Identities=14% Similarity=0.100 Sum_probs=140.3
Q ss_pred eeecccccchhhHHHHHHHHHHhcCCCC---ceEEEEeeEEEcCCCccccccCC--CccCcchhhhh-------------
Q psy15223 974 LYLEGSDQHRGWFHSSLLTSIILNKSAP---YKALLTHGFVVDSKGKKMSKSKG--NIIKPQKLCNL------------- 1035 (2492)
Q Consensus 974 l~~~G~D~~rgwf~s~l~~~~~~~~~~p---~k~v~~hG~vld~~G~KMSKS~G--N~i~p~~ii~~------------- 1035 (2492)
+|+.|.||. ++|..+.....++ |..+ .-.++.||||. .+|.|||||+| |+|+++|++++
T Consensus 380 IyV~g~~q~-~~~~~l~~~l~~l-G~~~~~~~~~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~ 456 (629)
T 2zue_A 380 INVIGAEQK-HPQLAIKYALQLL-GFEDAAANLYHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN 456 (629)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHT-TCHHHHHTEEEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCcHh-hHHHHHHHHHHHc-CCCCCCCeEEEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcC
Confidence 444455655 5566654444344 3322 24688999998 67899999999 99999999999
Q ss_pred --------------cChhhHHHHhhccCcccccccCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCC--ccc
Q psy15223 1036 --------------FGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPN--INI 1091 (2492)
Q Consensus 1036 --------------yGaD~lRl~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~rf~l~~l~~~~~~--~~~ 1091 (2492)
+|+|++||++++.++.+|++||++.+.+ ...++.|+.+.++.........+.. ...
T Consensus 457 ~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~ 536 (629)
T 2zue_A 457 PALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKN 536 (629)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999998742 2346678888887642211000000 000
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHH
Q psy15223 1092 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWH 1170 (2492)
Q Consensus 1092 ~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~-~~~r~sa~~~L~~ 1170 (2492)
.......+.++.++..+.++.+.+.++++++++|.++..+++++ ..++.||=+. +....+.. ...|.....+...
T Consensus 537 ~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy~~~---~vl~~~~~~~~~RL~L~~a~~~ 612 (629)
T 2zue_A 537 ADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFYMDH---PVLKAEEGVREARLLLVMAVEQ 612 (629)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHHHHC---CSTTSCTTHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHHHhc---cccCCChHHHHHHHHHHHHHHH
Confidence 00111245677788999999999999999999999999999998 6788877432 33322222 2346655566677
Q ss_pred HHHHHHHHhcccch
Q psy15223 1171 INQSLLRLISPILS 1184 (2492)
Q Consensus 1171 il~~l~~lLaPilP 1184 (2492)
+|...+.||.-=.|
T Consensus 613 vL~~gL~lLGI~ap 626 (629)
T 2zue_A 613 VLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCcc
Confidence 78888877754333
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=262.02 Aligned_cols=167 Identities=15% Similarity=0.171 Sum_probs=116.6
Q ss_pred EEEEeeeEEcCCCceeeeccCCccCcchhhhc-------------------------cChhHHHHHHhccCCCCcccccH
Q psy15223 2154 ALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL-------------------------FGAEILRLWVASTDYSKDLSISN 2208 (2492)
Q Consensus 2154 ~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-------------------------yGaD~lR~~l~s~~~~~d~~fs~ 2208 (2492)
.++.||||+ .+|+|||||+||+|++.|++++ +|+|++||++++..+.+|++|++
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECH
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecH
Confidence 467889997 5899999999999999999999 99999999999988899999999
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q psy15223 2209 EILNRV--------VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280 (2492)
Q Consensus 2209 ~~l~~~--------~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~ 2280 (2492)
+.+... ...+.|+.+.++.... .. .+ + .....+.|+.++..+.++.+.+.+++++++++.+++.
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~--~~-~~--~---~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~y 531 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGE--WG-AP--D---LSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQY 531 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCC--CC-CC--C---GGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcc--cC-CC--c---cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988542 3344555555554311 01 01 1 1112456788889999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHhhhh-----hhccccCC-hHHHHHHHHHHHHHHHHHHHHHhc
Q psy15223 2281 LQIYCSEDLGSFYLDILKD-----RLYTTKKN-SHARRSAQTSIWHINQSLLRLISP 2331 (2492)
Q Consensus 2281 l~~f~~~~ls~~Yle~~K~-----~l~~~~~~-~~~r~~~~~~l~~il~~l~~lLaP 2331 (2492)
+++++ ..++. |++..++ +....... ...|.........+|...+.+|.-
T Consensus 532 l~~La-~~fn~-fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi 586 (592)
T 1iq0_A 532 LLDLA-ASWNA-YYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586 (592)
T ss_dssp HHHHH-HHHHH-HHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHH-HHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99998 45555 4454433 33332211 223554445666777777777753
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=247.73 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=138.4
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCcc---ccEEEEeeeEEcCCCceeeeccC--CccCcchhhhc-------------
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAP---YKALLTHGFVVDSKGKKMSKSKG--NIIKPQKLCNL------------- 2185 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~p---fk~v~~hG~vld~~G~KMSKS~G--Nvi~p~~ii~~------------- 2185 (2492)
+|+.|.||. +||..+.....++ |..+ .-.++.||||. .+|.|||||+| |+|+++|++++
T Consensus 380 IyV~g~~q~-~~~~~l~~~l~~l-G~~~~~~~~~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~ 456 (629)
T 2zue_A 380 INVIGAEQK-HPQLAIKYALQLL-GFEDAAANLYHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN 456 (629)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHT-TCHHHHHTEEEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCcHh-hHHHHHHHHHHHc-CCCCCCCeEEEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcC
Confidence 444455555 4565554333333 3322 23578899998 67899999999 99999999999
Q ss_pred --------------cChhHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCC--ccc
Q psy15223 2186 --------------FGAEILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPN--INI 2241 (2492)
Q Consensus 2186 --------------yGaD~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~--~~~ 2241 (2492)
+|+|++||++++.++.+|++||++.+.+ +.+.+.|+.+.++............ ...
T Consensus 457 ~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~ 536 (629)
T 2zue_A 457 PALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKN 536 (629)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999998899999999998742 4556778888887643211000000 000
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHH
Q psy15223 2242 IKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWH 2320 (2492)
Q Consensus 2242 ~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~-~~~r~~~~~~l~~ 2320 (2492)
.......+.++.++..+.++.+.+..++++++++.++..+++++ ..++.+|=+ . +....... ...|.....+...
T Consensus 537 ~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy~~-~--~vl~~~~~~~~~RL~L~~a~~~ 612 (629)
T 2zue_A 537 ADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFYMD-H--PVLKAEEGVREARLLLVMAVEQ 612 (629)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHHHH-C--CSTTSCTTHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHHHh-c--cccCCChHHHHHHHHHHHHHHH
Confidence 00111245678899999999999999999999999999999998 578777743 2 33322222 2345555566677
Q ss_pred HHHHHHHHHhc
Q psy15223 2321 INQSLLRLISP 2331 (2492)
Q Consensus 2321 il~~l~~lLaP 2331 (2492)
+|...+.+|.-
T Consensus 613 vL~~gL~lLGI 623 (629)
T 2zue_A 613 VLKNALYLMGI 623 (629)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 78887777754
|
| >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-22 Score=224.52 Aligned_cols=116 Identities=31% Similarity=0.396 Sum_probs=101.9
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCC---------------CCCCcHHHHHHHHHHHhc
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRN---------------DPTAHAEIIALRMASKLL 108 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~---------------~~~~HaE~~ai~~a~~~~ 108 (2492)
++|..||+.|+.+|+++. .+++|||||||+||+||++|+|....+. +++.|||++||++|++..
T Consensus 40 ~~de~~M~~A~~~A~~s~-~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g 118 (184)
T 2hvw_A 40 SWQDYFMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG 118 (184)
T ss_dssp CHHHHHHHHHHHHGGGCC-CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC
Confidence 467789999999999985 6899999999999999999999976542 789999999999998864
Q ss_pred cCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCC
Q psy15223 109 NNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLN 166 (2492)
Q Consensus 109 ~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~ 166 (2492)
..+ +|+|||||+|||+||+++|+++||+||||+..+++... +.++|++.|+.
T Consensus 119 --~~l-~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~---~~~~L~~aGIe 170 (184)
T 2hvw_A 119 --ISA-NNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF---AIELMTQKEVE 170 (184)
T ss_dssp --CCC-TTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH---HHHHHHHHTCE
T ss_pred --CCc-eeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH---HHHHHHHCCCE
Confidence 234 49999999999999999999999999999998876532 48899999987
|
| >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-22 Score=228.55 Aligned_cols=126 Identities=26% Similarity=0.327 Sum_probs=104.5
Q ss_pred CCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCC-----------------------------------
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRN----------------------------------- 90 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~----------------------------------- 90 (2492)
|..||..|..+|++|. .++.|||||||+||+||++|+|.++.+.
T Consensus 3 d~~fM~~A~~~A~rs~-~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESK-CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGST 81 (193)
T ss_dssp HHHHHHHHHHHHTTCC-CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-------------------
T ss_pred HHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccccc
Confidence 5679999999999985 5799999999999999999999988642
Q ss_pred ------------------CCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCc
Q psy15223 91 ------------------DPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGA 152 (2492)
Q Consensus 91 ------------------~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~ 152 (2492)
+++.|||++||++|++.. ..+ .|+|||||+|||+||+++|+++||+||||+..+|+.+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g--~~~-~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~- 157 (193)
T 1vq2_A 82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENG--SSI-EGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK- 157 (193)
T ss_dssp -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHT--CCC-TTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC-
T ss_pred cccccchhhccccccccCCCCCCHHHHHHHHHHhcC--CCc-CCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc-
Confidence 248899999999999874 234 4999999999999999999999999999997776654
Q ss_pred cchhhhHHhhcCCCceeEEeccccHHHHHH
Q psy15223 153 CGSIINLFQEKKLNHHTILTGGVMQKQCEK 182 (2492)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~ 182 (2492)
|...++|.+.|+. |.. +..++|.+
T Consensus 158 -~~~~~~l~~aGI~----v~~-~~~~~~~~ 181 (193)
T 1vq2_A 158 -PGWDDILRNAGIE----VFN-VPKKNLNK 181 (193)
T ss_dssp -TTTTHHHHHTTCE----EEE-CCGGGCCS
T ss_pred -hHHHHHHHHCCCE----EEE-eCHHHHHH
Confidence 4446899999987 443 55555543
|
| >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-22 Score=224.62 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=103.2
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccC------------CCC-------CCcHHHHHHHH
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITR------------NDP-------TAHAEIIALRM 103 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~------------~~~-------~~HaE~~ai~~ 103 (2492)
..|..||..|+.+|+++. .+++||||||| +||+||++|+|....+ ++| +.|||++||++
T Consensus 11 ~~d~~~M~~A~~~A~~s~-~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~ 89 (178)
T 2w4l_A 11 EWPEYFMAVAFLSAQRSK-DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMN 89 (178)
T ss_dssp CHHHHHHHHHHHHHTTCC-CSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHH
Confidence 457789999999999986 45899999999 7999999999988643 344 79999999999
Q ss_pred HHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCC-CCccchhhhHHhhcCCCceeEEeccccHHHHHH
Q psy15223 104 ASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFK-TGACGSIINLFQEKKLNHHTILTGGVMQKQCEK 182 (2492)
Q Consensus 104 a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~-~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~ 182 (2492)
|.. ..+ +|+|||||+|||+||+++|+++||+||||+..++. ......+..+|++.|+.. .. ++++|.+
T Consensus 90 a~g----~~~-~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~aGI~V----~~--~~~~~~~ 158 (178)
T 2w4l_A 90 KNL----TDV-KGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTF----RK--FIPKCSK 158 (178)
T ss_dssp --------CC-TTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEE----EE--CCCSCSE
T ss_pred hcC----CCc-cccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHCCCEE----EE--ccHHHHH
Confidence 752 234 49999999999999999999999999999987322 211123578999999873 32 5666666
Q ss_pred HHHHHH
Q psy15223 183 LLKSFF 188 (2492)
Q Consensus 183 l~~~~~ 188 (2492)
|+..|.
T Consensus 159 l~~~f~ 164 (178)
T 2w4l_A 159 IVIDFD 164 (178)
T ss_dssp EEEEGG
T ss_pred HHHHHH
Confidence 666653
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-20 Score=248.52 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=98.6
Q ss_pred HhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--hHH--H-HH
Q psy15223 1582 KWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--MPI--E-IQ 1656 (2492)
Q Consensus 1582 ~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hG--lPi--e-~~ 1656 (2492)
.|......+.... ..+++.| +..+.|+|||.+||||+++.+..|+++||.+++|++|.|+.++|.|| -.| + ..
T Consensus 3 ~W~~~~a~~~~~~-~~~~~~y-v~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~ 80 (523)
T 1irx_A 3 HWADYIADKIIRE-RGEKEKY-VVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ 80 (523)
T ss_dssp CHHHHHHHHHHHH-SCCCSEE-EEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCG
T ss_pred chHHHHHHHHHHh-cCCCCeE-EECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHH
Confidence 3555555444322 1223344 55567999999999999999999999999999999999999999999 322 1 11
Q ss_pred H-HHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHH-HHHHHHHHHHhCC-ceEE
Q psy15223 1657 I-EKLYGKNLSP----IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA-NELRAFGIIFKKG-YVYH 1728 (2492)
Q Consensus 1657 a-~k~~~~~~~~----~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~-~~~~~F~~L~~kG-liyr 1728 (2492)
+ ++.+|. ++ ..+ ..|++++.++.+.++++|+.||+. ||.. ++++. |.. .+++++.+|.++| .||+
T Consensus 81 a~~~~~G~--~~~~~p~p~-~~~~~~~~~~~~~~~~~l~~Lgi~--~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 81 EWKDYLGM--PISEVPDPW-GCHESYAEHFMRKFEEEVEKLGIE--VDLL-YASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp GGGGGTTS--BGGGSCCTT-SSSSSHHHHHHHHHHHHHHTTTCC--CEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCC--CcccCCcch-hhHHHHHHHHHHHHHHHHHHcCCC--ceEE-echhh-ccchHHHHHHHHHHHchHHHHH
Confidence 1 111232 22 011 136779999999999999999995 5543 55543 666 7899999999999 7774
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-20 Score=241.32 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=92.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCC--chH--H-HHH-HHHhCcCCCH----HH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHG--MPI--E-IQI-EKLYGKNLSP----IE 519 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hG--lpi--E-~~a-~k~~~~~~~~----~e 519 (2492)
+.|++ .+.|+|||.+||||+++.+..|+++||.+++|++|.|+.++|.|| -.| + .++ ++.+|. ++ ..
T Consensus 20 ~~yv~-~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~--~~~~~p~p 96 (523)
T 1irx_A 20 EKYVV-ESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGM--PISEVPDP 96 (523)
T ss_dssp SEEEE-EEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTS--BGGGSCCT
T ss_pred CeEEE-CCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCC--CcccCCcc
Confidence 34555 456899999999999999999999999999999999999999999 333 1 111 111232 22 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHH-HHHHHHHHHHHcC-CeEE
Q psy15223 520 IQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA-NELRAFGIIFKKG-YVYH 578 (2492)
Q Consensus 520 ~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~-~~~~~f~~l~~kG-liyr 578 (2492)
+ ..|+++++++.+.++++|+.|||. ||. |++++. |.. ..++++.+|.++| .||+
T Consensus 97 ~-~~~~~~~~~~~~~~~~~l~~Lgi~--~D~-~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 W-GCHESYAEHFMRKFEEEVEKLGIE--VDL-LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp T-SSSSSHHHHHHHHHHHHHHTTTCC--CEE-EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHcCCC--ceE-Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 1 236779999999999999999994 554 455544 666 8899999999999 7775
|
| >3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-19 Score=193.61 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=80.9
Q ss_pred CcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHH
Q psy15223 52 PIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAG 131 (2492)
Q Consensus 52 ~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ 131 (2492)
++.+.++.+-..+|+|||||||++|+||+.|.+ ++.|||++||+ ...+ .|||||||+|||+||++
T Consensus 8 q~vd~~k~~~t~PNPpVGAVIVkDGeIIA~Ge~-------gTaHAEInAIr-------g~~L-~GaTLYVTLEPC~MCAg 72 (278)
T 3g8q_A 8 QTVDVKKILNEIPKRTVTAALLEGGEIVAVEEA-------DDEHAERKLVR-------RHDV-EGKVVFVTARPCLYCAR 72 (278)
T ss_dssp EEEEHHHHHHHSCCSSCEEEEEETTEEEEEEEC-------SSSCHHHHHHH-------HSCC-TTCEEEESSCCCHHHHH
T ss_pred cchhHhHHhccCCCCCEEEEEEECCEEEEecCC-------CCCCHHHHHhC-------CCCC-CCcEEEEeCCchHHHHH
Confidence 344555566668999999999999999999922 79999999997 1234 49999999999999999
Q ss_pred HHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCce
Q psy15223 132 AIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHH 168 (2492)
Q Consensus 132 ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~ 168 (2492)
||+|+||+|||||+.+. |.+..+|+++|+...
T Consensus 73 AII~AGIkRVVYGa~~~-----G~G~e~LreAGIEV~ 104 (278)
T 3g8q_A 73 ELAEAGVAGVVYLGRGR-----GLGPYYLARSGVEVV 104 (278)
T ss_dssp HHHTTTCCEEEEEECSS-----CCHHHHHHTTTCEEE
T ss_pred HHHHhCCCEEEEEecCC-----ChhHHHHHHCCCEEE
Confidence 99999999999999652 446789999999853
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=191.77 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=132.1
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEe---eEEEcCCCccccccCCCccCcchhhhhcCh-----------
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNLFGA----------- 1038 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~h---G~vld~~G~KMSKS~GN~i~p~~ii~~yGa----------- 1038 (2492)
-+|+.|.||. ++|..+.....++ |. |+...+.| |++. |||||+||+|+++|++++++.
T Consensus 367 ~IyV~g~~q~-~~f~q~~~~~~~l-G~-~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~ 438 (607)
T 1f7u_A 367 MIYVIASQQD-LHAAQFFEILKQM-GF-EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNEN 438 (607)
T ss_dssp EEEECCGGGH-HHHHHHHHHHHHT-TC-GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHH
T ss_pred EEEEEcChHh-hHHHHHHHHHHHc-CC-CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 3667788887 5676655444444 43 45444555 3443 799999999999999998844
Q ss_pred -----------------hhHHHHhhccCcccccccCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCCCCc-ccc
Q psy15223 1039 -----------------EILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNI-NII 1092 (2492)
Q Consensus 1039 -----------------D~lRl~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~rf~l~~l~~~~~~~-~~~ 1092 (2492)
.++||+.++.++.++++|+++.+.. ...++.|+.+++|...+ ..+.. ...
T Consensus 439 ~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~----~~~~~~~~~ 514 (607)
T 1f7u_A 439 KYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASG----ITQEKWINA 514 (607)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTT----SCHHHHTTS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----CCccccccc
Confidence 4799999999999999999998743 23467788888886421 11100 000
Q ss_pred ccccc-chHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccC-ChHHHHHHHHHHHH
Q psy15223 1093 KISDM-VEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKK-NSHARRSAQTSIWH 1170 (2492)
Q Consensus 1093 ~~~~~-~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~-~~~~r~sa~~~L~~ 1170 (2492)
+...+ .+.++.++..|.++.+.+.++++++++|.++..+++++ ..|+.||=.. +....+. -...|.........
T Consensus 515 ~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La-~~fn~fY~~~---~Vl~~~~~~~~aRL~L~~a~~~ 590 (607)
T 1f7u_A 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT-HQVSSCYDVL---WVAGQTEELATARLALYGAARQ 590 (607)
T ss_dssp CGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHC---CSTTSCHHHHHHHHHHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHH
Confidence 11112 35567788899999999999999999999999999999 6899998431 2222211 11245555566667
Q ss_pred HHHHHHHHhcc
Q psy15223 1171 INQSLLRLISP 1181 (2492)
Q Consensus 1171 il~~l~~lLaP 1181 (2492)
+|+..+.||.-
T Consensus 591 vL~~gL~LLGI 601 (607)
T 1f7u_A 591 VLYNGMRLLGL 601 (607)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhcCC
Confidence 77777777754
|
| >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=170.10 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=101.4
Q ss_pred Ccceeeeeee-----CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHh---
Q psy15223 65 EVPVGAVLVK-----NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHV--- 136 (2492)
Q Consensus 65 ~~pvGaviv~-----~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~--- 136 (2492)
+..+.|..|+ ++.||++|+|.. .+++.|||++||++|++.++ ..+..|+|+|||+|||+||+++|+++
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~-~~~~~g~TlYvTlePC~~Ca~aIi~al~~ 107 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAFD-PALRYNVTWYVSSSPCAACADRIIKTLSK 107 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhcC-ccccCCeEEEEEcChHHHHHHHHHHhhhh
Confidence 5667888884 256999999976 36799999999999987553 34444899999999999999999999
Q ss_pred --CCceEEEecCCCCC--CccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHH-hcc---Ccccccccc
Q psy15223 137 --RLGEIIYGTPSFKT--GACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFI-KRR---NFVKNKSIN 201 (2492)
Q Consensus 137 --gi~rvv~g~~~~~~--~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~-~~~---~~~~~~~a~ 201 (2492)
||++||||+.++.. -....+...|.++|+.... +..+++...+..|.. .++ ||++.+...
T Consensus 108 ~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~-----~~~~e~~~~w~~fv~~~~~~~~pf~~W~~l~ 175 (190)
T 2nyt_A 108 TKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRI-----MKPQDFEYVWQNFVEQEEGESKAFQPWEDIQ 175 (190)
T ss_pred cCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEE-----ecHHHHHHHHHHHHHccCCcCCccHhHHhch
Confidence 99999999887642 1123678899999998432 345678888888988 677 999888766
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=182.36 Aligned_cols=192 Identities=14% Similarity=0.059 Sum_probs=131.4
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCccccEEEEe---eeEEcCCCceeeeccCCccCcchhhhccCh------------
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTH---GFVVDSKGKKMSKSKGNIIKPQKLCNLFGA------------ 2188 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~h---G~vld~~G~KMSKS~GNvi~p~~ii~~yGa------------ 2188 (2492)
+|+.|.||. +||..+.....++ |. |+.+.+.| |++. |||||+||+|+++|++++++.
T Consensus 368 IyV~g~~q~-~~f~q~~~~~~~l-G~-~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~ 439 (607)
T 1f7u_A 368 IYVIASQQD-LHAAQFFEILKQM-GF-EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNENK 439 (607)
T ss_dssp EEECCGGGH-HHHHHHHHHHHHT-TC-GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHH
T ss_pred EEEEcChHh-hHHHHHHHHHHHc-CC-CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCccc
Confidence 667777877 4566554433333 43 45444556 3443 799999999999999998744
Q ss_pred ----------------hHHHHHHhccCCCCcccccHHHHHH--------HHHHHHHHHHHHHHHHhcCCCCCCCc-cccc
Q psy15223 2189 ----------------EILRLWVASTDYSKDLSISNEILNR--------VVETYRRIRNTLRFLLANTSDFNPNI-NIIK 2243 (2492)
Q Consensus 2189 ----------------D~lR~~l~s~~~~~d~~fs~~~l~~--------~~~~~~kl~n~~r~~~~~~~~~~~~~-~~~~ 2243 (2492)
.++||++++.++.++++|+++.+.. +..++.|+.+++|...+ ..+.. ....
T Consensus 440 ~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~----~~~~~~~~~~ 515 (607)
T 1f7u_A 440 YAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASG----ITQEKWINAD 515 (607)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTT----SCHHHHTTSC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----CCcccccccc
Confidence 4899999999999999999998753 45677788888876421 11100 0000
Q ss_pred ccc-cchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCC-hHHHHHHHHHHHHH
Q psy15223 2244 ISD-MVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKN-SHARRSAQTSIWHI 2321 (2492)
Q Consensus 2244 ~~~-~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~-~~~r~~~~~~l~~i 2321 (2492)
... ..+.++.++..|.++.+.+..++++++++.++..++++. ..|+.||=+ -+....... ...|.........+
T Consensus 516 ~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La-~~fn~fY~~---~~Vl~~~~~~~~aRL~L~~a~~~v 591 (607)
T 1f7u_A 516 FSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT-HQVSSCYDV---LWVAGQTEELATARLALYGAARQV 591 (607)
T ss_dssp GGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHH---CCSTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHHh---CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 145678889999999999999999999999999999998 689998843 122222111 12344555556667
Q ss_pred HHHHHHHHhc
Q psy15223 2322 NQSLLRLISP 2331 (2492)
Q Consensus 2322 l~~l~~lLaP 2331 (2492)
|+..+.||.-
T Consensus 592 L~~gL~LLGI 601 (607)
T 1f7u_A 592 LYNGMRLLGL 601 (607)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhcCC
Confidence 7777777743
|
| >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.4e-14 Score=153.93 Aligned_cols=83 Identities=37% Similarity=0.770 Sum_probs=74.7
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||++++++|++++||.+|++.||+++|.
T Consensus 76 l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~ 155 (168)
T 1z3a_A 76 LIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQ 155 (168)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHT
T ss_pred ccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 45664444 69999999999999999999999999999999999999888899999999999999999999999999887
Q ss_pred ceeE
Q psy15223 1409 FVKN 1412 (2492)
Q Consensus 1409 ~~~~ 1412 (2492)
.++.
T Consensus 156 ~~~~ 159 (168)
T 1z3a_A 156 EIKA 159 (168)
T ss_dssp TCC-
T ss_pred cccc
Confidence 6543
|
| >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-14 Score=156.06 Aligned_cols=82 Identities=28% Similarity=0.584 Sum_probs=73.9
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhccc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 1407 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr 1407 (2492)
.+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||+++|++|++++||.+|++.||+++|
T Consensus 82 ~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r 161 (179)
T 2nx8_A 82 RLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGR 161 (179)
T ss_dssp CCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHH
T ss_pred cccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHH
Confidence 345664444 6999999999999999999999999999999999999988889999999999999999999999999887
Q ss_pred cce
Q psy15223 1408 NFV 1410 (2492)
Q Consensus 1408 ~~~ 1410 (2492)
..+
T Consensus 162 ~~~ 164 (179)
T 2nx8_A 162 ERK 164 (179)
T ss_dssp HHH
T ss_pred hcC
Confidence 553
|
| >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.6e-14 Score=156.02 Aligned_cols=80 Identities=23% Similarity=0.502 Sum_probs=68.8
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc--cCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK--KLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~--~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
.+..|..++ .|||+||++||+|+||+|||||++++++|++|+.++++... ..+|+++|++|++++||.+|++.||++
T Consensus 98 ~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~ 177 (189)
T 3dh1_A 98 VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQ 177 (189)
T ss_dssp HHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC
T ss_pred ccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHH
Confidence 467775555 69999999999999999999999999999999999987553 456789999999999999999999998
Q ss_pred ccc
Q psy15223 1406 RRN 1408 (2492)
Q Consensus 1406 rr~ 1408 (2492)
++.
T Consensus 178 ~~~ 180 (189)
T 3dh1_A 178 ENP 180 (189)
T ss_dssp ---
T ss_pred hcC
Confidence 764
|
| >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=151.85 Aligned_cols=82 Identities=38% Similarity=0.771 Sum_probs=73.2
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||++++++|++++||.+|++.||+++|.
T Consensus 74 l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~ 153 (159)
T 2b3j_A 74 LEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRA 153 (159)
T ss_dssp CTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 45664444 69999999999999999999999999999999999999888899999999999999999999999999886
Q ss_pred cee
Q psy15223 1409 FVK 1411 (2492)
Q Consensus 1409 ~~~ 1411 (2492)
.++
T Consensus 154 ~~~ 156 (159)
T 2b3j_A 154 NKK 156 (159)
T ss_dssp C--
T ss_pred ccc
Confidence 553
|
| >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-13 Score=146.01 Aligned_cols=79 Identities=30% Similarity=0.511 Sum_probs=71.7
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||+++|++ ++++||.+||+.||+++|.
T Consensus 90 l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 90 LEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp CTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 45664444 699999999999999999999999999999999999998888999999999 9999999999999999885
Q ss_pred c
Q psy15223 1409 F 1409 (2492)
Q Consensus 1409 ~ 1409 (2492)
+
T Consensus 169 ~ 169 (171)
T 1wwr_A 169 N 169 (171)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-12 Score=138.17 Aligned_cols=73 Identities=27% Similarity=0.510 Sum_probs=54.5
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .|||+||++||+|+||+|||||+++++.|++|+.++++....+||+++|++|++++||.+||+.|
T Consensus 71 ~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 71 LPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred cCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 45664444 69999999999999999999999999999999999999888899999999999999999999987
|
| >2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=7e-12 Score=142.64 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=63.9
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc----cCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK----KLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~----~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
+|..|..++ .|||+||++||+|+||+|||||+++++.|++|+.....+.. ..+|+++|++|++++||.+|++.||
T Consensus 101 ~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~ 180 (197)
T 2g84_A 101 GLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYN 180 (197)
T ss_dssp TSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHH
T ss_pred CcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecCCHHHHHHHHHHHH
Confidence 477885555 69999999999999999999999999999888432221111 1258899999999999999999999
Q ss_pred hcc
Q psy15223 1404 IKR 1406 (2492)
Q Consensus 1404 ~~r 1406 (2492)
++.
T Consensus 181 ~~~ 183 (197)
T 2g84_A 181 ACN 183 (197)
T ss_dssp HHC
T ss_pred HcC
Confidence 864
|
| >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-12 Score=139.25 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=64.9
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCccc----ceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACG----SIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g----~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
.+..|..++ .|||+||++||+|+||+|||||+++++.|++| +.++++.....+|++++ +|++++||.+||+.||
T Consensus 78 ~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~ 156 (164)
T 1wkq_A 78 QLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWR 156 (164)
T ss_dssp SCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHH
T ss_pred CcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHH
Confidence 356775554 69999999999999999999999999999999 66777655556677766 7799999999999999
Q ss_pred hcc
Q psy15223 1404 IKR 1406 (2492)
Q Consensus 1404 ~~r 1406 (2492)
++.
T Consensus 157 ~~~ 159 (164)
T 1wkq_A 157 NFA 159 (164)
T ss_dssp HCT
T ss_pred hcc
Confidence 764
|
| >1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-10 Score=123.97 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=76.7
Q ss_pred CCCCCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-
Q psy15223 46 DSPYLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t- 122 (2492)
|..+|..|.+.++++..- ++.||||+|+ +||+|+ +|+|......+++.|||++||.+|... +...+. .+++|++
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~-~~~l~~~~ 79 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQ-MLAVAADT 79 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEE-EEEEEESC
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeE-EEEEEeCC
Confidence 345677788888888765 7899999999 589999 799999888899999999999999987 555664 7999995
Q ss_pred ---CCChHhHHHHHHHhC
Q psy15223 123 ---LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 ---~EPC~mC~~ai~~~g 137 (2492)
++||.||..+|.+.+
T Consensus 80 ~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 80 PGPVSPCGACRQVISELC 97 (136)
T ss_dssp SSSCCCCHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHcC
Confidence 999999999999997
|
| >2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-10 Score=120.10 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=78.3
Q ss_pred cccccCCCCCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeE
Q psy15223 41 MLIETDSPYLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYK 118 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ 118 (2492)
+..+++..+|..|.+.++.+... ++.||||+|+ +||+|+ +|.|......+++.|||++||.+|... +...+. .+.
T Consensus 10 ~~~~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~-~i~ 86 (146)
T 2fr5_A 10 VEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-GYKDFR-AIA 86 (146)
T ss_dssp -CCHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEE-EEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-CCCceE-EEE
Confidence 33444566888888877777654 6889999999 799988 799998888889999999999999987 555664 788
Q ss_pred EEEc-----CCChHhHHHHHHHhC
Q psy15223 119 IYVT-----LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 119 ly~t-----~EPC~mC~~ai~~~g 137 (2492)
+|++ ++||.||..+|.+.+
T Consensus 87 v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 87 ISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp EEESCSSSCCCCCHHHHHHHHHTC
T ss_pred EEeCCCCcccCCCHHHHHHHHHhC
Confidence 9998 999999999999997
|
| >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-09 Score=120.75 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=57.1
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||.+++..| +..+++ .+|++++.+ ++++||.+|++.||+++|.
T Consensus 82 ~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~~l----~~~gi~v~~-~~~~e~~~l~~~f~~~~r~ 153 (161)
T 1p6o_A 82 YKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKYL----QTRGHEVVV-VDDERCKKIMKQFIDERPQ 153 (161)
T ss_dssp HTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHHH----HHTTCEEEE-CCCHHHHHHHHHHHHHCHH
T ss_pred ccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHHHH----HhcCCEEEE-ecHHHHHHHHHHHHHhChh
Confidence 45664454 69999999999999999999999887654 222222 237789988 9999999999999998876
Q ss_pred c
Q psy15223 1409 F 1409 (2492)
Q Consensus 1409 ~ 1409 (2492)
.
T Consensus 154 ~ 154 (161)
T 1p6o_A 154 D 154 (161)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-09 Score=110.80 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=76.4
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE-
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV- 121 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~- 121 (2492)
+.|..+|..|.+.++++...++.||||+|+ +||+|+ +|.|.. ..+++.|||+.||.+|... +...+. ..++|+
T Consensus 5 ~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~-~i~vv~~ 79 (130)
T 2z3g_A 5 QEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLT-CIVAIGN 79 (130)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEE-EEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CCCceE-EEEEEEC
Confidence 345567888888888877667899999999 789988 699987 4678999999999999987 444554 678888
Q ss_pred ----cCCChHhHHHHHHHhCCc-eEEE
Q psy15223 122 ----TLEPCAMCAGAIIHVRLG-EIIY 143 (2492)
Q Consensus 122 ----t~EPC~mC~~ai~~~gi~-rvv~ 143 (2492)
+++||.||..+|.+.+-. +|+.
T Consensus 80 ~~~~~~~PCG~Crq~l~e~~~~~~v~~ 106 (130)
T 2z3g_A 80 ENRGILSPCGRCRQVLLDLHPGIKAIV 106 (130)
T ss_dssp TTTEEECCCHHHHHHHHHHCTTCEEEE
T ss_pred CCCCccCcCHHHHHHHHHhCCCCEEEE
Confidence 689999999999998733 3443
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-07 Score=119.01 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=70.1
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==||.|||.||||||.+.++...++| +|.+.|+.=+|.. ++.. -..+++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDt----------------D~~R-------~~~e~~ 148 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDT----------------DPRR-------VDPEAY 148 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCC----------------CGGG-------CCTTHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcC----------------Cccc-------ccHHHH
Confidence 45666899999999999999999777777 3445555444433 2221 134678
Q ss_pred HHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +|+..|+.++ |.........+|.++|+.|.
T Consensus 149 ~~I~edL~wLGl--~wd~~~~qSd--r~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 149 DMIPADLEWLGV--EWDETVIQSD--RMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHTC--CCSEEEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCccccc--CHHHHHHHHHHHHHcCCcee
Confidence 899999999999 8887666654 55666778899999999997
|
| >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.8e-08 Score=121.69 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred chhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .||| +||++||+|+||+|||||+.++..+..|+.++.+. +++++|.+|++++||.+|++.|
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~----~~gi~v~~g~l~~e~~~l~~~f 149 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EAGIEVREGILADQAERLNEKF 149 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH----TTTCEEEECTTHHHHHHHTHHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHH----hCCeEEEeCCccccccccccee
Confidence 56674444 6999 79999999999999999999998888887666543 4678999999999999999999
Q ss_pred Hhccc--cceeEEEEecCCCc
Q psy15223 1403 FIKRR--NFVKNKIQALPENR 1421 (2492)
Q Consensus 1403 ~~~rr--~~~~~l~~a~~k~~ 1421 (2492)
|+++| .+.+.+..|+.-..
T Consensus 150 ~~~~~~~rP~V~lk~A~SLDG 170 (373)
T 2b3z_A 150 LHFMRTGLPYVTLKAAASLDG 170 (373)
T ss_dssp HHHHHHSSCEEEEEEEEETTS
T ss_pred eeeccccchhheeeeeecCCC
Confidence 98754 45567777655443
|
| >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-07 Score=118.22 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=66.3
Q ss_pred chhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .||| +||++||+|+||+|||||+.++.. ..|+.++.+. +++++|.+|++++||.+|++.|
T Consensus 77 ~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f 151 (360)
T 2hxv_A 77 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFR----NHGIEVIEGVLEEEVKKLCEFF 151 (360)
T ss_dssp CTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHH----TTTCEEEECTTHHHHHHHTHHH
T ss_pred cCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhhHHHHHH----hCCcEEEECCccccchhcccee
Confidence 56675554 6999 799999999999999999998876 6665555433 4778999999999999999999
Q ss_pred Hhccc--cceeEEEEecC
Q psy15223 1403 FIKRR--NFVKNKIQALP 1418 (2492)
Q Consensus 1403 ~~~rr--~~~~~l~~a~~ 1418 (2492)
|+++| .+.+.+..++.
T Consensus 152 ~~~~~~~rP~V~lk~A~S 169 (360)
T 2hxv_A 152 ITYVTKKRPFVALKYAST 169 (360)
T ss_dssp HHHHHHSSCEEEEEEEEE
T ss_pred eeccccchhhheeehhhc
Confidence 97743 34566666544
|
| >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-07 Score=116.71 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=67.7
Q ss_pred chhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSF 1402 (2492)
Q Consensus 1330 C~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f 1402 (2492)
+..|..++ .||| +||++||+|+||+|||||+.++..+..|...+.+. ++.++|.+|++++||.+|++.|
T Consensus 90 ~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f 165 (402)
T 2g6v_A 90 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEQLNKGF 165 (402)
T ss_dssp GGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHH----HTTCCEEECTTTTHHHHHTHHH
T ss_pred cCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHH----hCCcEEEeCCcchhhHHHhhhh
Confidence 56674444 6999 79999999999999999999887766665555433 4678999999999999999999
Q ss_pred Hhcc--ccceeEEEEecCCCc
Q psy15223 1403 FIKR--RNFVKNKIQALPENR 1421 (2492)
Q Consensus 1403 ~~~r--r~~~~~l~~a~~k~~ 1421 (2492)
|.++ ..+.+.+-.++.=..
T Consensus 166 ~~~~~~~rP~V~~k~A~SLDG 186 (402)
T 2g6v_A 166 LKRMRTGFPYIQLKLGASLDG 186 (402)
T ss_dssp HHHHHSSSCEEEEEEEECTTC
T ss_pred hhccccccchheeeeeecCCC
Confidence 9874 445566666654333
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.2e-06 Score=106.00 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=64.9
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|.|||.||||||++.+....++|- ..|.-++.+-=+|. .. ...++++.+.
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~~i~ 57 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR-------------------ER-------SRPEYTENIL 57 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS-------------------SS-------CCHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc-------------------cc-------cchHHHHHHH
Confidence 37899999999999999998777773 34555554444431 00 1245778999
Q ss_pred HHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 537 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
++++.||+ +|+. +|+.++ +...-.....+|.++|++|.
T Consensus 58 ~dL~wLGl--~wde~~~~QS~--r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 58 EGLQWLGL--TWDEGPYFQSD--RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCC--CCCCCCccccC--CHHHHHHHHHHHHHCCCceE
Confidence 99999999 9986 666544 23344567788999999997
|
| >3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-06 Score=94.73 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=71.1
Q ss_pred CCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc--
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-- 122 (2492)
|..+|..|.+.++++..-.. ||||+|+ +||+|+ +|.|......+++.|||.+||.+|..... ..+ +...++.+
T Consensus 4 ~~~L~~~A~~a~~~ayaPyS-~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~-~~~-~~~~v~~~~~ 79 (142)
T 3b8f_A 4 EQQLYDVVKQLIEQRYPNDW-GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQK-KVT-HSICLARENE 79 (142)
T ss_dssp HHHHHHHHHHHHHHHCSSSC-EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTC-CEE-EEEEEEESST
T ss_pred HHHHHHHHHHHHHhcCCCCC-CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCC-CcE-EEEEEEecCC
Confidence 34466666666777766556 9999998 789988 89998888888999999999999988643 232 24566663
Q ss_pred ------CCChHhHHHHHHHhCCceEEE
Q psy15223 123 ------LEPCAMCAGAIIHVRLGEIIY 143 (2492)
Q Consensus 123 ------~EPC~mC~~ai~~~gi~rvv~ 143 (2492)
+-||.||...|.+.+-.-.|+
T Consensus 80 ~~~~~~~sPCG~CRq~l~e~~~~~~v~ 106 (142)
T 3b8f_A 80 HSELKVLSPCGVCQERLFYWGPEVQCA 106 (142)
T ss_dssp TSCCEECCCCHHHHHHHGGGCTTCEEE
T ss_pred CCCCCCCCcHHHHHHHHHHhCCCCEEE
Confidence 449999999999997444444
|
| >1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=4.8e-06 Score=89.35 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCCCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-
Q psy15223 46 DSPYLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t- 122 (2492)
+..++..|.+.++.+.. -.+.+|||+|+ +||+|+ +|.|-.....+++.|||.+||.+|........+. ...++..
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~-~i~vv~~~ 88 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGWK-CMVICGDS 88 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCC-EEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCCCceE-EEEEEeCC
Confidence 34566666666666654 25889999999 689887 6999887777889999999999999875442254 5777774
Q ss_pred ---C-CChHhHHHHHHHhC
Q psy15223 123 ---L-EPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 ---~-EPC~mC~~ai~~~g 137 (2492)
. .||.||...|.+.+
T Consensus 89 ~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 89 EDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp SSSCCCCCHHHHHHHHTTS
T ss_pred CCcccCHHHHHHHHHHHhC
Confidence 5 89999999999986
|
| >3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.3e-06 Score=88.56 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc--
Q psy15223 47 SPYLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-- 122 (2492)
Q Consensus 47 ~~~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-- 122 (2492)
...+..|.+.+.+++. -.+.+|||+|+ +||+|+ +|.|-......++.|||.+||.+|..... ..+ ..++++
T Consensus 11 ~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~-~~i---~aiav~~~ 85 (138)
T 3r2n_A 11 DTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGG-GRL---VAVYCVDG 85 (138)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCE---EEEEEECT
T ss_pred HHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCC-Cce---EEEEEEcC
Confidence 3355555555555543 34789999998 689987 99998877777899999999999988753 343 245665
Q ss_pred ----CCChHhHHHHHHHhCCceEEEe
Q psy15223 123 ----LEPCAMCAGAIIHVRLGEIIYG 144 (2492)
Q Consensus 123 ----~EPC~mC~~ai~~~gi~rvv~g 144 (2492)
..||.+|...|.+.+-..|+..
T Consensus 86 ~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 86 NGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp TSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 7999999999999863335443
|
| >2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=2e-05 Score=83.98 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=63.1
Q ss_pred CCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc----
Q psy15223 49 YLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT---- 122 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t---- 122 (2492)
++..|.+.+++|..- .+.+|||+++ +||+|+ +|.|-.......+.|||.+||.+|..... ..+. ...+++.
T Consensus 15 L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~-~~~~-aiav~~~~~~~ 91 (141)
T 2d30_A 15 LIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD-KEFV-AIAIVADTKRP 91 (141)
T ss_dssp HHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEE-EEEEEESCSSC
T ss_pred HHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCC-CceE-EEEEEeCCCCc
Confidence 344444445555432 5789999999 689877 99998877677899999999999998743 3332 2334443
Q ss_pred CCChHhHHHHHHHhC
Q psy15223 123 LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 123 ~EPC~mC~~ai~~~g 137 (2492)
..||.||...|...+
T Consensus 92 ~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred cCcCHHHHHHHHHhc
Confidence 689999999999986
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.8e-05 Score=91.68 Aligned_cols=54 Identities=22% Similarity=0.462 Sum_probs=50.3
Q ss_pred CHHHHHHHHHcCcEEEecccccc-cccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTF-KNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
+.++|++++++|+||||+|.+++ +++..+++++..+|++|+++|||.|||.+..
T Consensus 163 ~~e~a~~~l~~G~yis~~g~i~~~k~~~~l~~~v~~ip~drlLlETD~P~l~p~~ 217 (287)
T 3rcm_A 163 EREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRS 217 (287)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTCGGGHHHHTTSCTTSEEECCCTTSCCCTT
T ss_pred CHHHHHHHHHCCcEEEECchhccccCHHHHHHHHHhcCCccEEEeccCCccCccc
Confidence 57899999999999999999999 7888999999999999999999999998754
|
| >3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} | Back alignment and structure |
|---|
Probab=97.45 E-value=2.5e-05 Score=86.48 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=29.0
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSF 1363 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~ 1363 (2492)
...|..++ .|||+||++||+|+||+|||||+.+.
T Consensus 55 L~GaTLYVTLEPC~MCAgAII~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 55 VEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGR 89 (278)
T ss_dssp CTTCEEEESSCCCHHHHHHHHTTTCCEEEEEECSS
T ss_pred CCCcEEEEeCCchHHHHHHHHHhCCCEEEEEecCC
Confidence 45675554 69999999999999999999999864
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=89.96 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=45.0
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.|+|++++++||||||+|. ++++++ .++++..+|++|+++|||.|||.+..
T Consensus 204 s~e~a~~~l~lG~yis~~G~-~~k~~~-~~~~v~~iPldrlLlETDaP~l~~~~ 255 (325)
T 3ipw_A 204 TEEEMNQILNEGWDIGVTGN-SLQSIE-LLNVMKQIPIERLHIETDCPYCGIKK 255 (325)
T ss_dssp CHHHHHHHHHTTCEEEECSG-GGSSHH-HHHHHTTSCGGGEEECCCTTSCCCCT
T ss_pred CHHHHHHHHhcCcEEeeCcc-ccCcHH-HHHHHHhCCcccEEEeCCCccccccc
Confidence 57999999999999999996 666555 44899999999999999999997643
|
| >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 | Back alignment and structure |
|---|
Probab=97.28 E-value=2.5e-05 Score=89.05 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=43.3
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHH
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKL 1398 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l 1398 (2492)
+..|..++ .|||+||++||+++||+||||+.+.++.++.+ ..++.. ..++|.. +..+||.++
T Consensus 120 ~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~~~~--~~~l~~----aGI~v~~-~~~~~~~~~ 182 (193)
T 1vq2_A 120 IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW--DDILRN----AGIEVFN-VPKKNLNKL 182 (193)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCCTTT--THHHHH----TTCEEEE-CCGGGCCSS
T ss_pred cCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcchHH--HHHHHH----CCCEEEE-eCHHHHHHh
Confidence 34564444 69999999999999999999998888765332 333333 3357776 666666543
|
| >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=4.8e-06 Score=93.01 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=45.5
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcC-CCc-ccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFK-TGA-CGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~-~g~-~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
.+..|..++ .|||.||++||+|+||+||||+..... ... .++ ..++.. ..++|.. +.+||.+++..|++.
T Consensus 94 ~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~-~~~L~~----aGI~V~~--~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 94 DVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAA-RLLFNM----AGVTFRK--FIPKCSKIVIDFDSI 166 (178)
T ss_dssp CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHH-HHHHHH----HTCEEEE--CCCSCSEEEEEGGGC
T ss_pred CccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHH-HHHHHH----CCCEEEE--ccHHHHHHHHHHHhh
Confidence 345675554 699999999999999999999987221 111 111 222222 3456666 667777777777655
Q ss_pred ccc
Q psy15223 1406 RRN 1408 (2492)
Q Consensus 1406 rr~ 1408 (2492)
+..
T Consensus 167 ~~~ 169 (178)
T 2w4l_A 167 NSR 169 (178)
T ss_dssp ---
T ss_pred ccC
Confidence 443
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=86.88 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=65.3
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 456 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 535 (2492)
Q Consensus 456 dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~ 535 (2492)
==+|.|||.|||||+++.+.....+|- +.+.|+-=+|..- +.. -..++++.+
T Consensus 9 RFAPsPtG~LHiG~~rtal~n~l~Ar~-----~~g~~ilRieDtD----------------~~R-------~~~~~~~~I 60 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALGSYLQARA-----RQGRWLVRIEDID----------------PPR-------EVPGAAETI 60 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHHHHHHHHH-----TTCEEEEEECCSC----------------GGG-------SCTTHHHHH
T ss_pred EECcCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEEecCC----------------chh-------hHHHHHHHH
Confidence 347899999999999999977666663 3344443333321 111 114577899
Q ss_pred HHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 536 KMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 536 ~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.++++.||+ +|+. +|+.++ +.........+|.++|++|.-
T Consensus 61 ~~dL~~LGl--~~D~~~~~qSe--r~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 61 LRQLEHYGL--HWDGDVLWQSQ--RHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp HHHHHHTTC--CCSSCCEEGGG--CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCC--CCCCCCeeeeC--CHHHHHHHHHHHHHcCCcccC
Confidence 999999999 8886 555554 345667888999999999974
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=86.97 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=66.0
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+==+|.|||.|||||+++.+.....+| ++.+.|+.=+|..--+ . -..++++
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~----------------R-------~~~~~~~ 58 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP----------------R-------EVPGAAE 58 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG----------------G-------SCTTHHH
T ss_pred EEEECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch----------------h-------hHHHHHH
Confidence 3345899999999999999996666665 3344444444433211 0 1145678
Q ss_pred HHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+.||+ +|+. +|+.++ +......+..+|.++|++|.-
T Consensus 59 ~I~~dL~~LGl--~~D~~~~~qSe--r~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 59 TILRQLEHYGL--HWDGDVLWQSQ--RHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp HHHHHHHHTTC--CCSSCCEEGGG--CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCC--CCCCCCeeeeC--CHHHHHHHHHHHHHcCCcccC
Confidence 99999999999 8886 555554 445667788999999999964
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=85.86 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=45.3
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M 50 (2492)
|.++|++++++||||||+|.++ +++++++++..+|++|+++|||.||+
T Consensus 153 ~~e~a~~~l~~G~yis~~g~~~--~~~~~~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 153 SVTELRRAISLGCWFSVGPTMV--RTQKGAALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp CHHHHHHHHHTTCEEEECHHHH--TSHHHHHHHHHSCGGGEEECCCTTTS
T ss_pred CHHHHHHHHcCCcEEEECcccC--chHHHHHHHHHcCCCeEEEeCCCCcc
Confidence 5789999999999999999999 67789999999999999999999997
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=91.27 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=71.0
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==||.|||.||||||++.++...++| +|++.|+.=+|..- +.. -..+++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD----------------~~R-------~~~e~~ 148 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTD----------------PRR-------VDPEAY 148 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCC----------------GGG-------CCTTHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCC----------------ccc-------ccHHHH
Confidence 45677899999999999999999777776 45555655555442 211 134577
Q ss_pred HHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++++.||+ +|+..|+.+ +|.........+|.++|++|.
T Consensus 149 ~~I~edL~wLGl--~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 149 DMIPADLEWLGV--EWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHTC--CCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 899999999999 887766666 455666777889999999997
|
| >1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00048 Score=82.46 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=67.9
Q ss_pred CCCCCccccccccccc-CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC-cccCCCeEEEEcCC
Q psy15223 48 PYLSPIPHRAKLALIA-GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN-YRFSKNYKIYVTLE 124 (2492)
Q Consensus 48 ~~M~~a~~~a~~~~~~-~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly~t~E 124 (2492)
..+..|.+.++++..- .+.||||+|+ +||+|+ +|.|-.+...+++.|||..||.++...... ..+. ...++.+.+
T Consensus 190 ~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~-~i~vv~~~~ 267 (294)
T 1ctt_A 190 ALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQ-RAVLAEKAD 267 (294)
T ss_dssp HHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEE-EEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEE-EEEEEecCC
Confidence 3444455555555443 3789999999 678654 899999888899999999999999876432 2443 578888877
Q ss_pred ----ChHhHHHHHHHhCC
Q psy15223 125 ----PCAMCAGAIIHVRL 138 (2492)
Q Consensus 125 ----PC~mC~~ai~~~gi 138 (2492)
||.||...|...+-
T Consensus 268 ~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 268 APLIQWDATSATLKALGC 285 (294)
T ss_dssp CSSCCHHHHHHHHHHHTC
T ss_pred CCcCccHHHHHHHHHHCC
Confidence 99999999999764
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00039 Score=89.74 Aligned_cols=94 Identities=28% Similarity=0.334 Sum_probs=65.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||||||++.++...++| ...|. |+.=+|.. ++.. ...+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~---fiLRieDT----------------D~~R-------~~~e~~ 78 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQ---CNLRFDDT----------------NPVK-------EDIEYV 78 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCE---EEEEECCC----------------CGGG-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEECCC----------------Cchh-------cCHHHH
Confidence 55667899999999999999999888887 23444 44444433 2211 245678
Q ss_pred HHHHHHHHHhcccccc-cCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+.||+ +| +.+|+.++ |.......-.+|.++|++|.
T Consensus 79 ~~I~edL~wLGl--~wde~~~~qSe--r~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 79 ESIKNDVEWLGF--HWSGNVRYSSD--YFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp HHHHHHHHHTTC--CCSSSCEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCCeehcc--cHHHHHHHHHHHHHCCCcee
Confidence 899999999999 77 45666654 22222333459999999997
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00066 Score=87.65 Aligned_cols=94 Identities=27% Similarity=0.304 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==||.|||.||||||++.++...++|- ..|.-++-+-=+| +.. ...+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~--~gG~fiLRieDTD-------------------~~R-------~~~e~~ 78 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQD--YKGQCNLRFDDTN-------------------PVK-------EDIEYV 78 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCC-------------------GGG-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECCCC-------------------chh-------cCHHHH
Confidence 455668899999999999999998888873 3454444443333 221 345688
Q ss_pred HHHHHHHHHccccccc-cCeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +| +.+|+.++- .........+|.++|+.|.
T Consensus 79 ~~I~edL~wLGl--~wde~~~~qSer--~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 79 ESIKNDVEWLGF--HWSGNVRYSSDY--FDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp HHHHHHHHHTTC--CCSSSCEEGGGG--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCCeehccc--HHHHHHHHHHHHHCCCcee
Confidence 999999999999 88 456666552 2222344469999999997
|
| >3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00028 Score=75.30 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=64.6
Q ss_pred CCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE----c
Q psy15223 49 YLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV----T 122 (2492)
Q Consensus 49 ~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~----t 122 (2492)
.+..|.+....++. -.+.+|||++. .||+|+ +|.|-.......+.|||..||.+|..... ..+. ...++. .
T Consensus 28 L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~-~~i~-aiavv~~~~~~ 104 (150)
T 3mpz_A 28 LRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGG-GRLV-ALSCVGPDGGV 104 (150)
T ss_dssp HHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC-CCEE-EEEEECTTSCB
T ss_pred HHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCC-CceE-EEEEEcCCCCc
Confidence 44444444455543 35789999998 789988 99998877777799999999999988643 3442 122222 2
Q ss_pred CCChHhHHHHHHHhCCceEEE
Q psy15223 123 LEPCAMCAGAIIHVRLGEIIY 143 (2492)
Q Consensus 123 ~EPC~mC~~ai~~~gi~rvv~ 143 (2492)
..||-+|...|...+=..|++
T Consensus 105 ~~PCG~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 105 LMPCGRCRQVLLEHGGPELLI 125 (150)
T ss_dssp CCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCHHHHHHHHHhCCCCEEE
Confidence 589999999999975333443
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0016 Score=86.12 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=75.5
Q ss_pred Ccceeeccccchhheee---ecccccccc--ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccc
Q psy15223 419 GKRILRTETASLVALAI---LNGVWGEIK--ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYV 493 (2492)
Q Consensus 419 g~~ILr~eta~~~~~~~---v~~ly~~~~--~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~ 493 (2492)
-|+|+.-+-++....++ +..++..-. .+...++..+=.+ |.|||.|||||+++-++.+.++|. ..|.-++.+
T Consensus 92 VPkVie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi 168 (592)
T 3al0_C 92 VPGIHRGSGSGSGSMFITGAFFDILEVGPKKIRRCFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI 168 (592)
T ss_dssp EECC------------------------CCCCCCCCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB
T ss_pred EEEEcccCCCCCChHHHHHHHHHHHHcChhhcccCCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe
Confidence 47888777666544443 223322211 0111234555445 999999999999999999999996 467666665
Q ss_pred cccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccC---------eeecCChHHHHHHH
Q psy15223 494 PGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANEL 564 (2492)
Q Consensus 494 ~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~ 564 (2492)
==+| +.. ...++.+.+.++++.||+ +||. +|+.++- .....
T Consensus 169 eDtD-------------------~~r-------~~~~~~~~I~~dL~wlGl--~~D~~~~~gG~~gp~~qSer--~~~y~ 218 (592)
T 3al0_C 169 EDTD-------------------TER-------SSREYEQQILESLRWCGL--DWDEGPDIGGDFGPYRQSER--LEIYR 218 (592)
T ss_dssp CCCC-------------------SSS-------CCHHHHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBSTTC--HHHHH
T ss_pred cCcC-------------------hhh-------ccHHHHHHHHHHHHHcCC--CCCCCCCcCCCCCCeeeeCC--HHHHH
Confidence 3333 111 123467889999999999 8887 3565543 25667
Q ss_pred HHHHHHHHcCCeEEe
Q psy15223 565 RAFGIIFKKGYVYHG 579 (2492)
Q Consensus 565 ~~f~~l~~kGliyr~ 579 (2492)
....+|.++|++|.-
T Consensus 219 ~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 219 EYAEKLVEDKRAYYV 233 (592)
T ss_dssp HHHHHHHHTTTEEEE
T ss_pred HHHHHHHHcCCceEe
Confidence 788999999999874
|
| >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00022 Score=80.00 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=44.9
Q ss_pred Ccchhhhhhc-cCCccchhHHHHHh-----ccCeEEeCCCCcCCC--cccceEeeeecccCCCceEEEccccHHHHHHHH
Q psy15223 1328 DLCNRCFNNL-FEPCAMCAGAIIHV-----RLGEIIYGTPSFKTG--ACGSIINLFQEKKLNHHTILTGGVMQKQCEKLL 1399 (2492)
Q Consensus 1328 ~LC~RC~~~v-~~~c~mC~~a~~~~-----~i~~vv~g~~~~~~g--~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~ 1399 (2492)
.++.+|..++ .|||+||++||+++ ||++||||++++... ...-....+. .+.++|.. +..+|+...+
T Consensus 80 ~~~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~----~aGI~V~~-~~~~e~~~~w 154 (190)
T 2nyt_A 80 ALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLK----EAGCKLRI-MKPQDFEYVW 154 (190)
T ss_pred cccCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHH----HCCCEEEE-ecHHHHHHHH
Confidence 3454664444 69999999999999 999999998865321 0000011111 24456653 3345777777
Q ss_pred HHHHh
Q psy15223 1400 KSFFI 1404 (2492)
Q Consensus 1400 ~~f~~ 1404 (2492)
.+|..
T Consensus 155 ~~fv~ 159 (190)
T 2nyt_A 155 QNFVE 159 (190)
T ss_pred HHHHH
Confidence 77766
|
| >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00019 Score=80.37 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.4
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcC
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFK 1364 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~ 1364 (2492)
+..|..++ .|||+||++||+|+||+|||||...+.
T Consensus 121 l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~ 156 (184)
T 2hvw_A 121 ANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRI 156 (184)
T ss_dssp CTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCC
Confidence 55664444 699999999999999999999998654
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00057 Score=85.54 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=43.5
Q ss_pred CHHHHHHHHHcC--cEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELG--FYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
|.|+|++++++| |||||+|. +++++ +.++++..+|++|+++|||.|||..
T Consensus 258 s~e~a~~~l~lG~~~yis~~g~-~~k~~-~~~e~v~~iPldrLLlETDaP~~~i 309 (401)
T 3e2v_A 258 SAIDLQKLLNLSPNIFIGVNGC-SLRTE-ENLAVVKQIPTERLLLETDAPWCEI 309 (401)
T ss_dssp CHHHHHHHHHHCTTEEEEECGG-GGSSH-HHHHHHHTSCGGGEEECCCTTSCCC
T ss_pred CHHHHHHHHhCCCCEEEEeCCE-ecCCH-HHHHHHHhCCchhEEEecCCCCccc
Confidence 579999999999 99999996 66554 4559999999999999999999753
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0014 Score=86.69 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
+..+=.+ |.|||.||+||+++-+..+.++|. ..|.-++.+==+| +.. ...+
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD-------------------~~r-------~~~~ 179 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTD-------------------TER-------SSRE 179 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-------------------SSS-------CCHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcC-------------------hhh-------ccHH
Confidence 4444444 999999999999999999999986 4676666653333 110 1334
Q ss_pred HHHHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1681 KIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.+.++|+.+|+ +||. +|+.++- .........+|.++|++|.-
T Consensus 180 ~~~~I~~dL~wlGl--~~D~~~~~gG~~gp~~qSer--~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 180 YEQQILESLRWCGL--DWDEGPDIGGDFGPYRQSER--LEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp HHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBSTTC--HHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCCCcCCCCCCeeeeCC--HHHHHHHHHHHHHcCCceEe
Confidence 66789999999999 8887 3666543 25567788899999999875
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0013 Score=88.61 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=68.8
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|.|||.||||||++.++...++|- |.+.|+.=+|.. ++.. ...+++
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~-----~gG~fiLRIEDT----------------D~~R-------~~~e~~ 118 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ-----YGGQFNLRMDDT----------------NPEL-------ARQEYV 118 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCC----------------CTTT-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEECcC----------------Cccc-------ccHHHH
Confidence 455668999999999999999998877773 444455444443 1211 145678
Q ss_pred HHHHHHHHHhcccccc-cCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1683 EQQKMDFMRLGILGEW-DNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw-~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.++|+.||+ +| +.+|+.+ +|.........+|.++|++|.
T Consensus 119 ~~IledL~wLGl--~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 119 DSIADDLKWLGL--DWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 899999999999 78 4566665 445556667789999999997
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00095 Score=86.36 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q psy15223 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 1680 (2492)
Q Consensus 1601 ~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~ 1680 (2492)
.++++-=+|.|||.||+||+++-++.|.++|. ..|+-|+.+=-+|. .. ...+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~---------------~r-----------~~~~ 63 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL---------------ER-----------SERE 63 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC---------------CS-----------GGGH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc---------------cc-----------cHHH
Confidence 46677789999999999999999999999998 68887777543331 01 1233
Q ss_pred HHHHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1681 KIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1681 ~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
+.+.+.++++.+|+ +|+. +|+.++ +......+..+|.++|.+|.
T Consensus 64 ~~~~I~~~l~wlGl--~~de~p~~gg~~g~y~QS~--r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 64 YEEKLMESLRWLGL--LWDEGPDVGGDHGPYRQSE--RVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCcccCCCCCceeeec--cHHHHHHHHHHHHHCCCeeE
Confidence 55667888999999 7875 355443 34445567888999999874
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0016 Score=83.57 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=69.8
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+==+|.|||.||+||+++.+..+.++|. ..|.-++.+=-.|. .. ...++++
T Consensus 27 ~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~ 78 (490)
T 4g6z_A 27 RTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV-------------------ER-------SSQEAVD 78 (490)
T ss_dssp EEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG-------------------GG-------CCHHHHH
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc-------------------cc-------ccHHHHH
Confidence 34457999999999999999999999885 36666665544442 10 1245778
Q ss_pred HHHHHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+.||+ +|+. +|+.++ +...-+....+|.++|++|.-
T Consensus 79 ~i~~dl~wlGl--~~d~~~~~qS~--r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 79 AILEGMAWLGL--DYDEGPYYQMQ--RMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HHHHHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCC--CCCCCCccccc--CHHHHHHHHHHHHHCCCEEeC
Confidence 89999999999 8886 455554 444556778899999999865
|
| >1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0018 Score=77.45 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=55.8
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccC--CCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITR--NDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~--~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~g 137 (2492)
.+.+|||+++ +||+|+ +|.|-...+ ...+.|||.+||.+|..... ..+ ..+.++..||.||...|.+.+
T Consensus 69 S~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~-~~~---~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 69 SNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGE-KAL---AAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp TCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTC-CCE---EEEEESSCCCHHHHHHHTTBT
T ss_pred CCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCC-CcE---EEEEEEcCCCHHHHHHHHHhC
Confidence 4889999999 689877 899976543 23588999999999988642 233 467889999999999999985
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0016 Score=83.44 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=69.8
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==+|.|||.|||||+++.+..+.++|. ..|.-++-+=-+|. .. ...++++.
T Consensus 28 ~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~~ 79 (490)
T 4g6z_A 28 TRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV-------------------ER-------SSQEAVDA 79 (490)
T ss_dssp EEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG-------------------GG-------CCHHHHHH
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc-------------------cc-------ccHHHHHH
Confidence 3446899999999999999999999985 36766665554442 11 12457889
Q ss_pred HHHHHHHccccccccC-eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 535 QKMDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.++++.||+ +|+. +|+.++ +.........+|.++|++|.-
T Consensus 80 i~~dl~wlGl--~~d~~~~~qS~--r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 80 ILEGMAWLGL--DYDEGPYYQMQ--RMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HHHHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCC--CCCCCCccccc--CHHHHHHHHHHHHHCCCEEeC
Confidence 9999999999 8886 466544 444556788899999999874
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0019 Score=87.03 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=68.1
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+++==+|.|||.||||||++.++...++|. ..| .|+.=+|.. ++.. ...+++
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG---~fiLRIEDT----------------D~~R-------~~~e~~ 118 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGG---QFNLRMDDT----------------NPEL-------ARQEYV 118 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTC---EEEEEECCC----------------CTTT-------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEECcC----------------Cccc-------ccHHHH
Confidence 455558899999999999999998888773 244 444333333 2221 145688
Q ss_pred HHHHHHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++++-||+ +|+ .+|+.++ |.........+|.++|+.|.
T Consensus 119 ~~IledL~wLGl--~wde~~~~qSe--r~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 119 DSIADDLKWLGL--DWGEHFYYASD--YFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccHhh--hHHHHHHHHHHHHHCCCcEe
Confidence 999999999999 884 5666554 44556677889999999997
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=80.78 Aligned_cols=69 Identities=30% Similarity=0.375 Sum_probs=51.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. |..+..-++ +....| .+++|.++.+.+|+|||||.||+|++.| .+|.+|..+.+
T Consensus 169 ~~~~~v~~G~DQ~~---~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~ 238 (323)
T 2cyb_A 169 LGVDLAVGGIDQRK---IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRK 238 (323)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCCEEEechhhHH---HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHh
Confidence 46899999999984 333322222 222333 4778899999999999999999999987 48999999886
Q ss_pred c
Q psy15223 1048 T 1048 (2492)
Q Consensus 1048 ~ 1048 (2492)
+
T Consensus 239 a 239 (323)
T 2cyb_A 239 A 239 (323)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0034 Score=81.26 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Q psy15223 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYE 530 (2492)
Q Consensus 451 ~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~ 530 (2492)
-+++.-=+|.|||.|||||+++-++.|.++|. ..|+-++-+--+| ++. ....
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD-------------------~~r-------~~~~ 63 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD-------------------LER-------SERE 63 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS-------------------CCS-------GGGH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC-------------------ccc-------cHHH
Confidence 35666778999999999999999999999998 6788777654333 111 1233
Q ss_pred HHHHHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 531 KIEQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 531 ~i~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.+.++++-||+ +|+. +|+.++ +-.....+..+|.++|..|.
T Consensus 64 ~~~~I~~~l~wlGl--~~de~p~~gg~~g~y~QS~--r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 64 YEEKLMESLRWLGL--LWDEGPDVGGDHGPYRQSE--RVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCcccCCCCCceeeec--cHHHHHHHHHHHHHCCCeeE
Confidence 56677889999999 7875 355433 33445567889999999875
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0029 Score=78.17 Aligned_cols=69 Identities=30% Similarity=0.375 Sum_probs=51.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.+.|.||.. |..+-.-++ +....| ..+.+.++.+.+|+|||||.||.|++.| .+|.+|..+.+
T Consensus 169 ~~~~~v~~G~DQ~~---~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~ 238 (323)
T 2cyb_A 169 LGVDLAVGGIDQRK---IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRK 238 (323)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCCEEEechhhHH---HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHh
Confidence 46899999999985 333322222 223333 4778899999999999999999999987 49999999986
Q ss_pred c
Q psy15223 2198 T 2198 (2492)
Q Consensus 2198 ~ 2198 (2492)
+
T Consensus 239 a 239 (323)
T 2cyb_A 239 A 239 (323)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0029 Score=81.83 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=64.0
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|.|||.||+||+++.+....++|- ..|.-++.+==+|. .. ...++++.+.
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~---------------~R-----------~~~~~~~~i~ 57 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR---------------ER-----------SRPEYTENIL 57 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS---------------SS-----------CCHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc---------------cc-----------cchHHHHHHH
Confidence 47999999999999999997777763 34544444433331 00 1245678899
Q ss_pred HHHHHhcccccccC-eeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1687 MDFMRLGILGEWDN-SYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~~-~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
++|+.||+ +|+. +|+.++ +...-.....+|.++|++|.
T Consensus 58 ~dL~wLGl--~wde~~~~QS~--r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 58 EGLQWLGL--TWDEGPYFQSD--RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHTTC--CCSEEEEEGGG--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCC--CCCCCCccccC--CHHHHHHHHHHHHHCCCceE
Confidence 99999999 8986 566554 23344556778999999997
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0041 Score=74.95 Aligned_cols=53 Identities=30% Similarity=0.527 Sum_probs=48.9
Q ss_pred CHHHHHHHHHcCcEEEeccccc-ccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVT-FKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+++++++++|+||||+|.++ ++++..+++++..+|++|++.+||.||+.+.
T Consensus 161 ~~~~~~~~~~~g~yi~~~g~~~~~~~~~~l~~~~~~~~~drll~eTD~P~~~~~ 214 (264)
T 1xwy_A 161 TREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPR 214 (264)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTSHHHHHHGGGSCGGGEEECCCTTSCCCT
T ss_pred CHHHHHHHHHCCeEEEECccccCCcCcHHHHHHHHhCCHHHEEEecCCCCcCcc
Confidence 4678999999999999999999 9888899999999999999999999998764
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0034 Score=75.37 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=48.7
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+++++++++|+||||+|.++++++..+++++..+|++|++.|||.||+.+.
T Consensus 162 ~~~~~~~~~~~g~~i~~~g~~~~~~~~~~~~~~~~~~~dril~eTD~P~~~p~ 214 (259)
T 1zzm_A 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLN 214 (259)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTCSHHHHHHHSCGGGEEECCCBTSSCCT
T ss_pred CHHHHHHHHHCCCEEEECceeeccccHHHHHHHHhCCHHHEEEecCCCCccCC
Confidence 35789999999999999999999888889999999999999999999999764
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0017 Score=77.61 Aligned_cols=46 Identities=11% Similarity=0.461 Sum_probs=35.7
Q ss_pred CHHHHHHHHHcCcEEEec---ccccccccHHHHHHhhhcccCccccccCCCC
Q psy15223 1 SLDVAREIIELGFYISFS---GIVTFKNSKILQKVMGSISLKNMLIETDSPY 49 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~ 49 (2492)
+.++|++++++||||||+ |.+++++. ++++..+|++|+++|||.||
T Consensus 162 ~~~~a~~~l~~G~yis~~~~pg~~t~~~~---~~~v~~ipldrlLlETD~P~ 210 (261)
T 3guw_A 162 NFETLDMVLETEYWIGLTVQPGKLSAEDA---ARIVAEHGPERFMLNSDAGY 210 (261)
T ss_dssp CTTTHHHHHTSSSEEEEECC-------CC---TTGGGGCC-CCEEEECCCCC
T ss_pred CHHHHHHHHhCCEEEEecCCCCcccHHHH---HHHHHhCCcceEEEecCCCC
Confidence 457899999999999999 99999765 68899999999999999999
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0072 Score=78.05 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
+.+==+|-|||.|||||+++-+..-.++|- ..|.-++.+==+| +.. ...++.
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD-------------------~~R-------~~~~~~ 77 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTD-------------------TER-------SSREYE 77 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-------------------TTT-------CCHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCC-------------------ccc-------ccHHHH
Confidence 345567899999999999999999888885 3565555443332 221 133567
Q ss_pred HHHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 533 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.+.++++.||+ |||. +|+.++- .........+|.++|++|.-
T Consensus 78 ~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QSer--~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 78 QQILESLRWCGL--DWDEGPDIGGDFGPYRQSER--LEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp HHHHHHHHHTTC--CCSBBTTTBCTTCCCBGGGC--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCC--CCCcCCCCCCCCCCeeeeCC--HHHHHHHHHHHHHcCCeEec
Confidence 889999999999 8987 3665542 24667788999999999874
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0039 Score=77.60 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=46.7
Q ss_pred CHHHHHHHHHcCcEEEec--ccccc------------------cccHHHHHHhhhcccCccccccCCCC-CC
Q psy15223 1 SLDVAREIIELGFYISFS--GIVTF------------------KNSKILQKVMGSISLKNMLIETDSPY-LS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~--~~~~~------------------~~~~~~~~~~~~~p~~~~~~etD~~~-M~ 51 (2492)
+.|+|++++++|+||||+ |.+|| +++..+++++...|++++++|||.|| |.
T Consensus 202 ~~e~a~~~~~~G~~i~~~~~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~~l~ 273 (330)
T 2ob3_A 202 DLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTFGFS 273 (330)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCSEEC
T ss_pred CHHHHHHHHhCCCEEEeCCCccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCcc
Confidence 468999999999999999 99998 77778999999999999999999998 54
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.018 Score=74.46 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+.+==+|-|||.||+||+++-+..-.++|- ..|.-++.+==+|. .. ...++.
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~ 77 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT-------------------ER-------SSREYE 77 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCT-------------------TT-------CCHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCc-------------------cc-------ccHHHH
Confidence 345567999999999999999999888875 35655555433332 11 133466
Q ss_pred HHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++|+.+|+ +||. +|+.++ +...-+....+|.++|++|.-
T Consensus 78 ~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QSe--r~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 78 QQILESLRWCGL--DWDEGPDIGGDFGPYRQSE--RLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp HHHHHHHHHTTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCC--CCCcCCCCCCCCCCeeeeC--CHHHHHHHHHHHHHcCCeEec
Confidence 789999999999 8887 366554 235567788899999999875
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0077 Score=72.71 Aligned_cols=53 Identities=32% Similarity=0.703 Sum_probs=48.9
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.+++++++++|+|+||+|.++++++..+++++..+|.+|++.+||.||+.+.
T Consensus 169 ~~~~~~~~~~~g~y~~~sg~~~~~~~~~l~~~i~~~~~driL~eTD~P~~~~~ 221 (268)
T 1j6o_A 169 DYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQ 221 (268)
T ss_dssp CHHHHHHHHHHTEEEEECGGGGCTTCHHHHHHHHHHCGGGEEECCCBTSCCCG
T ss_pred CHHHHHHHHHCCCeEEecccccccchHHHHHHHHhCChhhEEEecCCCCCCCc
Confidence 35789999999999999999999888899999999999999999999999764
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.016 Score=74.46 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 1607 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 1686 (2492)
Q Consensus 1607 ~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~ 1686 (2492)
=+|-|||.||+||+++-++.-.++|- ..|.-++.+==+|. .. ...++.+.+.
T Consensus 6 FaPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-------------------~R-------~~~~~~~~I~ 57 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTDR-------------------AR-------YVPGAEERIL 57 (468)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT-------------------TS-------CCTTHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------cc-------cChHHHHHHH
Confidence 47999999999999999999998884 45655554433332 11 1234567889
Q ss_pred HHHHHhcccccccCe---------eccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1687 MDFMRLGILGEWDNS---------YKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1687 ~~~~~lGi~~Dw~~~---------y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
++++.+|+ |||.. |+.++ +-..-.....+|.++|++|.-
T Consensus 58 ~dl~wlGl--~wd~~~~~gG~~gp~~QS~--r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 58 AALKWLGL--SYDEGPDVGGPHGPYRQSE--RLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp HHHHHTTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHcCC--CCCCCCCCCCCCCCeeccC--CHHHHHHHHHHHHHcCCeEEc
Confidence 99999999 89875 55554 233445667889999999875
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0097 Score=73.13 Aligned_cols=50 Identities=32% Similarity=0.605 Sum_probs=43.8
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.++|++++++|+||||+|. +++++. .++++..+|++|++.|||.|||.+
T Consensus 176 ~~~~~~~~l~~g~yi~~~g~-~~~~~~-~~~~~~~~p~drlLleTD~P~~~~ 225 (301)
T 2xio_A 176 TKEAAAALIDLDLYIGFNGC-SLKTEA-NLEVLKSIPSEKLMIETDAPWCGV 225 (301)
T ss_dssp CHHHHHHHHHTTCEEEECGG-GSSSHH-HHHHHHTSCGGGEEECCCTTSCCC
T ss_pred CHHHHHHHHhcCcEEEEccc-ccCChH-HHHHHHhCChHHEEEecCCCcccc
Confidence 46899999999999999997 676655 469999999999999999999864
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.017 Score=74.67 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=67.8
Q ss_pred EcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Q psy15223 455 HDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQ 534 (2492)
Q Consensus 455 ~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~ 534 (2492)
+==+|-|||.|||||+++-+..-.++|- ..|.-++.+==+ ++.. ...++.+.
T Consensus 9 ~RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDt-------------------D~~R-------~~~~~~~~ 60 (498)
T 2ja2_A 9 VRFCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDT-------------------DAQR-------DSEESYLA 60 (498)
T ss_dssp EEECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCC-------------------CTTT-------CCHHHHHH
T ss_pred EEECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcC-------------------CCcc-------cChHHHHH
Confidence 3347899999999999999999999995 356555544322 2222 22346789
Q ss_pred HHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 535 QKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 535 ~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
+.++++-||+ |||. +|+.++ +-..-.....+|.++|++|.-
T Consensus 61 I~~~L~wlGl--~wDegp~~gG~~~~~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 61 LLDALRWLGL--DWDEGPEVGGPYGPYRQSQ--RAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCC--CcCCCcCcCCCCCCeeeec--CHHHHHHHHHHHHHcCCeEEe
Confidence 9999999999 9987 566655 233445678899999999874
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.03 Score=72.26 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=68.0
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
.+==+|-|||.||+||+++-+..-.++|- ..|.-++.+==+| +.. ...++.+
T Consensus 8 r~RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD-------------------~~R-------~~~~~~~ 59 (498)
T 2ja2_A 8 RVRFCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTD-------------------AQR-------DSEESYL 59 (498)
T ss_dssp EEEECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC-------------------TTT-------CCHHHHH
T ss_pred eEEECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCC-------------------Ccc-------cChHHHH
Confidence 33457999999999999999999999984 4666555543332 211 1234667
Q ss_pred HHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+-+|+ |||. +|+.++ +...-+....+|.++|++|.-
T Consensus 60 ~I~~~L~wlGl--~wDegp~~gG~~~~~~QS~--r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 60 ALLDALRWLGL--DWDEGPEVGGPYGPYRQSQ--RAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCC--CcCCCcCcCCCCCCeeeec--CHHHHHHHHHHHHHcCCeEEe
Confidence 89999999999 8987 566655 233445677899999999875
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=74.13 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=46.7
Q ss_pred CHHHHHHHHHcCcEEEeccc---ccc----------cccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGI---VTF----------KNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~---~~~----------~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.++|++++++|+||||+|. ++| +++..+++++...|++|+++++|.+||.+.
T Consensus 236 ~~e~a~~~l~~G~~I~~~g~g~~~tf~~~~~~~~d~~~a~~l~~li~~g~~drilleTD~p~l~~~ 301 (365)
T 3rhg_A 236 DIDYQCKMLDRGVWLEFDMIGLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVFLKQMW 301 (365)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCCCBCSSSCBCCCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGS
T ss_pred CHHHHHHHHhCCCEEEecCCCccccccccccccchHHHHHHHHHHHHhCCCCcEEEeCCCCCCCCC
Confidence 46899999999999999997 677 456679999999999999999999998664
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.016 Score=71.98 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=35.6
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+....| -.+++.++...+|+|||||.||.|+..| ++-.++.++=.+.+
T Consensus 209 ~~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 209 YGCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp HCCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 37899999999983 32222212222333333 4567788888899999999999998877 23455555555554
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.029 Score=71.31 Aligned_cols=73 Identities=19% Similarity=0.131 Sum_probs=47.5
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. ++....=.+.-+ .+.. .-.+++.++.+.+|+|||||.||.|+..+- +-.++.++=++.+
T Consensus 185 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~--~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~~ 258 (420)
T 1jil_A 185 LNCKIQVGGSDQWG-NITSGIELMRRMYGQTD--AYGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWIN 258 (420)
T ss_dssp HCEEEEEEEGGGHH-HHHHHHHHHHHHHCCCC--CEEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhcCCCC--eeEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 47899999999984 221111112223 3333 346778888889999999999999988762 3345555544443
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.017 Score=75.59 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=63.2
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||||||++-++.-.++|- ..|.-++.+= +.++.. ...++.+.+.
T Consensus 29 FAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRie-------------------DtD~~R-------~~~~~~~~I~ 80 (512)
T 4gri_A 29 YAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIE-------------------DTDQSR-------YSPEAENDLY 80 (512)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBC-------------------CCCTTS-------CCHHHHHHHH
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeC-------------------cCCCCc-------CCHHHHHHHH
Confidence 38999999999999999999999884 3565544432 233322 1234678889
Q ss_pred HHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 537 MDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
++|+-||+ +||. +|+-++ +...-.....+|.++|++|.-
T Consensus 81 ~~L~wlGl--~wDe~p~~~g~~~py~QS~--r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 81 SSLKWLGI--SFDEGPVVGGDYAPYVQSQ--RSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCC--CCCcCCccCCCCCCccccc--hHHHHHHHHHHHHHcCCcccc
Confidence 99999999 8874 333322 223334577889999999874
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.022 Score=70.81 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=36.3
Q ss_pred cCceeeecccchhhhhHHHHHHHH--HHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTS--IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~--~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. |-.+-.- .-+....| -.+++.++.+.+|+|||||.||.|+..| ++-.++.++=.+.+
T Consensus 209 ~~~~i~p~G~DQ~~---~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 209 YGCRVQLGGSDQLG---NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp HCCCEEEEEGGGHH---HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 37899999999984 2222222 22333333 4567788888899999999999999877 24556666666654
|
| >3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.017 Score=62.49 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=59.3
Q ss_pred CCCCCCCcccccccccccCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc--
Q psy15223 46 DSPYLSPIPHRAKLALIAGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-- 122 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-- 122 (2492)
|...+..|.+....+.-+...+|||++. .||+|+ +|.|-.. -..+.|||..||-+|...... .+. ..+-++
T Consensus 31 d~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~~Avs~G~~-~~~--ai~vv~~~ 104 (158)
T 3oj6_A 31 GQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLGVAAAAGAT-KLT--HIVAIANE 104 (158)
T ss_dssp HHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHHHHHHTTCC-CEE--EEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHHHHHHhCCC-ceE--EEEEEeCC
Confidence 4445544444333221122378999998 689987 9999763 345889999999999876532 222 222332
Q ss_pred ----CCChHhHHHHHHHhCCc-eEEE
Q psy15223 123 ----LEPCAMCAGAIIHVRLG-EIIY 143 (2492)
Q Consensus 123 ----~EPC~mC~~ai~~~gi~-rvv~ 143 (2492)
.-||-+|-..|...+-. +|+.
T Consensus 105 ~~~~~~PCG~CRQvL~Ef~~~~~vil 130 (158)
T 3oj6_A 105 GRGILSPCGRCRQVLADLHPGIKAIV 130 (158)
T ss_dssp TTEEECCCHHHHHHHHHHSTTCEEEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 25999999999997632 3443
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.015 Score=71.41 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=50.2
Q ss_pred cCceeeecccchhhhhHHHHHHH--HHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLT--SIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~--~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+++|+.++|.||.. + -.+-. +.-+....+ -.+++.++.+.+|+|||||.||.|+..| ++..++.++=.+.+
T Consensus 190 ~~~~v~~gG~DQ~~-~--i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWG-N--ITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHH-H--HHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHH-H--HHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 37899999999984 2 22222 122233333 3557788888899999999999999887 56778777766664
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.027 Score=71.25 Aligned_cols=71 Identities=18% Similarity=0.064 Sum_probs=46.5
Q ss_pred cCceeeecccchhhhhHHHHHHH--HHHh-cCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLT--SIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~--~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
|.+|+.++|.||.. |-.+-. +.-+ .+.. .-.+++.++.+.+|+|||||.||.|+..+- +-+++.++=++.
T Consensus 184 ~~~~i~~gG~DQ~~---ni~lgrdlarr~~~~~~--~~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~ 256 (419)
T 2ts1_A 184 EGCRLQIGGSDQWG---NITAGLELIRKTKGEAR--AFGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWI 256 (419)
T ss_dssp HCEEEEEEEGGGHH---HHHHHHHHHHHHHC--C--CEEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH---HHHHHHHHHHHhcCCCC--eeecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 47899999999984 222221 1122 2233 346778888889999999999999998762 334555554444
Q ss_pred c
Q psy15223 2197 S 2197 (2492)
Q Consensus 2197 s 2197 (2492)
+
T Consensus 257 ~ 257 (419)
T 2ts1_A 257 N 257 (419)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.025 Score=71.04 Aligned_cols=61 Identities=28% Similarity=0.230 Sum_probs=40.1
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh-------------cCCCC--ceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL-------------NKSAP--YKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~-------------~~~~p--~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+.+|+.+.|.||. +++....=.+.-. ....+ -.-.+++.++...+|+|||||.||.|+..+
T Consensus 231 ~~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC
Confidence 4799999999996 2322211111111 11111 145668888889999999999999998876
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.03 Score=70.95 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=47.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCC-ccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-vi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+.+|+.++|.||.. ++....=.+.-+....| -.+++.++...+|+|||||.|| .|+..+ ++.+++.++=++.+
T Consensus 186 ~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 186 HGCTLQIGGADQWG-NIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp HCCCEEEECSTTHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 47899999999984 22111111122233333 4677888888999999999999 898876 23455555555554
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.019 Score=70.63 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=49.8
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+....+ -.+++.++...+|+|||||.||.|+..| ++..++.++=.+.+
T Consensus 190 ~~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWG-NITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHH-HHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 37999999999983 32222222222333333 3457778888899999999999999887 55667777766654
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.011 Score=73.42 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=45.6
Q ss_pred CHHHHHHHHHcCcEEEeccccc---------ccccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVT---------FKNSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
+.++|++++++|+||||+|..+ ++++..+++++...|++|++++||.|||.
T Consensus 226 ~~e~a~~~l~~G~~i~~~g~~t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~p~~~ 285 (339)
T 3gtx_A 226 DPAYHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHW 285 (339)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEEE
T ss_pred CHHHHHHHHHcCcEEEEccCccccccCCCchHHHHHHHHHHHHhcCCCeEEEecCCCccc
Confidence 4689999999999999999753 47778899999999999999999999973
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.047 Score=71.42 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=62.5
Q ss_pred cCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q psy15223 1606 DGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQ 1685 (2492)
Q Consensus 1606 ~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~ 1685 (2492)
==+|-|||.||||||++-++.-.+||- ..|.-++.+==+| ++. ...++.+.+
T Consensus 28 RFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD-------------------~~R-------~~~~~~~~I 79 (512)
T 4gri_A 28 RYAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTD-------------------QSR-------YSPEAENDL 79 (512)
T ss_dssp EECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCC-------------------TTS-------CCHHHHHHH
T ss_pred EeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-------------------CCc-------CCHHHHHHH
Confidence 348999999999999999999998874 4565554442222 211 123456788
Q ss_pred HHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1686 KMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1686 ~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.++|+-||+ +||. +|+-++ +...-+....+|.++|++|.-
T Consensus 80 ~~~L~wlGl--~wDe~p~~~g~~~py~QS~--r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 80 YSSLKWLGI--SFDEGPVVGGDYAPYVQSQ--RSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHHTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCC--CCCcCCccCCCCCCccccc--hHHHHHHHHHHHHHcCCcccc
Confidence 899999999 7774 233322 122234567789999999864
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=72.80 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=44.8
Q ss_pred CHHHHHHHHHcCcEEEeccccc---c-----------cccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVT---F-----------KNSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~---~-----------~~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
+.++|++++++|+||||+|..+ | +++..+++++...|++|++++||.+++.
T Consensus 245 ~~e~a~~~l~~G~~I~f~g~gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~drilleTD~p~~~ 309 (364)
T 3k2g_A 245 DPVYQATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVKM 309 (364)
T ss_dssp CHHHHHHHHHHTCEEEECCTTCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred CHHHHHHHHhCCcEEEecCCcccccccccccccccHHHHHHHHHHHHHhCCcccEEEeCCCCCCC
Confidence 4689999999999999999755 5 4567799999999999999999999863
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.037 Score=69.62 Aligned_cols=75 Identities=20% Similarity=0.120 Sum_probs=45.4
Q ss_pred cCceeeecccchhhhhHHHH--HHHHHH-h----------cCCcc--ccEEEEeeeEEcCCCceeeeccCCccCcchhhh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSS--LLTSII-L----------NKSAP--YKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCN 2184 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~--l~~~~~-l----------~~~~p--fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 2184 (2492)
+.+|+.++|.||.. ++... +....- . ..+.+ -.-.+++.++.+.+|+|||||.||.|+..+-
T Consensus 231 ~~~~i~~gG~DQ~~-ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~-- 307 (392)
T 1y42_X 231 QGVQMQIGGSDQYG-NIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY-- 307 (392)
T ss_dssp HCEEEEEECTTCHH-HHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT--
T ss_pred CCccEEecCcchHh-HHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC--
Confidence 47999999999962 22111 111100 0 11111 2346788888899999999999999988762
Q ss_pred ccChhHHHHHHhc
Q psy15223 2185 LFGAEILRLWVAS 2197 (2492)
Q Consensus 2185 ~yGaD~lR~~l~s 2197 (2492)
+-+++.++=++.+
T Consensus 308 ~tsp~~i~qki~~ 320 (392)
T 1y42_X 308 QTSVFDFYGYFVR 320 (392)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 2345445444443
|
| >3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.045 Score=57.81 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=52.9
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC-cccCCCeEEEEc------CCChHhHHHHHHH
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN-YRFSKNYKIYVT------LEPCAMCAGAIIH 135 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly~t------~EPC~mC~~ai~~ 135 (2492)
.+.+|||++. +||+|+ +|.|-.+.....+.|||..||-+|...... ..+. .+.++ .-||-+|-..|.+
T Consensus 30 S~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~---aiavv~~~~~~~~PCG~CRQ~l~E 105 (138)
T 3dmo_A 30 SNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFA---AIAVVGETHGPIAPCGACRQVMIE 105 (138)
T ss_dssp TCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEE---EEEEEESCSSSCCCCHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEE---EEEEEcCCCCccCCCHHHHHHHHH
Confidence 4678999998 688876 899987766666899999999999876432 0232 23333 5699999999998
Q ss_pred hC
Q psy15223 136 VR 137 (2492)
Q Consensus 136 ~g 137 (2492)
.+
T Consensus 106 f~ 107 (138)
T 3dmo_A 106 LG 107 (138)
T ss_dssp HH
T ss_pred hC
Confidence 74
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.039 Score=70.98 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHH
Q psy15223 457 GPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQK 536 (2492)
Q Consensus 457 gPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~~~~ 536 (2492)
=+|-|||.||||||++-++.-.++|- ..|.-++.+==+| +.. ...++++.+.
T Consensus 6 FaPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD-------------------~~R-------~~~~~~~~I~ 57 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTD-------------------RAR-------YVPGAEERIL 57 (468)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCC-------------------TTS-------CCTTHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-------------------Ccc-------cChHHHHHHH
Confidence 37999999999999999999999884 3565544443332 211 1234678999
Q ss_pred HHHHHccccccccCe---------eecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 537 MDFMRLGILGEWDNS---------YKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 537 ~~~~~lGi~~Dw~~~---------y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
++++-||+ |||.. |+.++ +-..-.....+|.++|++|.-
T Consensus 58 ~dl~wlGl--~wd~~~~~gG~~gp~~QS~--r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 58 AALKWLGL--SYDEGPDVGGPHGPYRQSE--RLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp HHHHHTTC--CCSBBTTTBCTTCCCBGGG--CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHcCC--CCCCCCCCCCCCCCeeccC--CHHHHHHHHHHHHHcCCeEEc
Confidence 99999999 89874 55544 233445678899999999874
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.039 Score=69.83 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=45.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+.+|+.+.|.||.. ++....=.+.-+ .+.. .-.+++.++...+|+|||||.||.|+..+= +-.++.++=++.
T Consensus 184 ~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~~lt~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~qki~ 256 (419)
T 2ts1_A 184 EGCRLQIGGSDQWG-NITAGLELIRKTKGEAR--AFGLTIPLVTKADGTKFGKTESGTIWLDKE--KTSPYEFYQFWI 256 (419)
T ss_dssp HCEEEEEEEGGGHH-HHHHHHHHHHHHHC--C--CEEEEECCCCCTTSCCTTCCSSCCCBSSTT--TSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhcCCCC--eeecccccccCCCcccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 47999999999983 222221112222 2222 356678888889999999999999988761 233444444444
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.043 Score=69.67 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+.+|+.+.|.||.. ++....=.+.-+ .+.. .-.+++.++...+|+|||||.||.|+..+= +-.++.++=++.
T Consensus 185 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~--~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~tsp~~i~~ki~ 257 (420)
T 1jil_A 185 LNCKIQVGGSDQWG-NITSGIELMRRMYGQTD--AYGLTIPLVTKSDGKKFGKSESGAVWLDAE--KTSPYEFYQFWI 257 (420)
T ss_dssp HCEEEEEEEGGGHH-HHHHHHHHHHHHHCCCC--CEEEEECCCBCTTSCBTTBCSSSBCBSSTT--TSCHHHHHHHHH
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhcCCCC--eeEeecccccCCccccccCCCCCeEecCCC--CCCHHHHHHHHh
Confidence 47999999999983 222222122223 3332 456678888889999999999999988761 233444444444
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.043 Score=69.57 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=46.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCC-ccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN-~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
+.+|+.+.|.||.. ++....=.+.-+.... .-.+++.++...+|+|||||.|| .|+..+ ++-+++.++=++.+
T Consensus 186 ~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~--~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 186 HGCTLQIGGADQWG-NIIAGVRLVRQKLGAT--VHALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp HCCCEEEECSTTHH-HHHHHHHHHHHHHCCC--CEEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHH-HHHHHHHHHHHhCCCC--ccccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 47899999999983 2222211222233333 34566788888999999999999 898776 23344444444443
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.033 Score=67.23 Aligned_cols=50 Identities=30% Similarity=0.445 Sum_probs=45.0
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSP 52 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~ 52 (2492)
+.+++++++++|+||||+|.+++. ..+++++..+|.++++.+||.|||.+
T Consensus 173 ~~~~~~~~~~~g~~i~~~g~~~~~--~~~~~~~~~~~~drll~eTD~P~~~p 222 (272)
T 2y1h_A 173 RPSVAMEGVRAGYFFSIPPSIIRS--GQKQKLVKQLPLTSICLETDSPALGP 222 (272)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGTC--HHHHHHHHHSCGGGEEECCCTTSSCS
T ss_pred CHHHHHHHHHCCCEEEECCcccCc--HHHHHHHHhCCHHHEEEecCCCCCCC
Confidence 358899999999999999998863 47999999999999999999999876
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.022 Score=71.13 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=43.8
Q ss_pred CHHHHHHHH-HcCcEEEeccccccc------ccHHHHHHhhhcccCccccccCCCCC
Q psy15223 1 SLDVAREII-ELGFYISFSGIVTFK------NSKILQKVMGSISLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~-~~g~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~etD~~~M 50 (2492)
+.++|++++ ++|+||||+|..+++ ++..+++++...|++|++++||.||+
T Consensus 222 ~~~~a~~~l~~~G~yI~f~g~~~~~~~~~~~ra~~l~~lv~~~p~drILleTDap~~ 278 (363)
T 3ovg_A 222 DKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRI 278 (363)
T ss_dssp CHHHHHHHHHHHCCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CHHHHHHHHHHCCcEEEECCeeccccCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Confidence 357899999 999999999987553 55679999999999999999999965
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.034 Score=68.70 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=43.2
Q ss_pred CHHHHHHHHHcCcEEEeccccccc------ccHHHHHHhhhcccCccccccCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFK------NSKILQKVMGSISLKNMLIETDSPYL 50 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~etD~~~M 50 (2492)
+.++|++++++|+||||+|..+++ +...+++++...|++|+++++|.||+
T Consensus 221 ~~e~a~~~l~~G~~i~~~g~~t~~~~~~~~~~~~l~~lv~~g~~drilleTD~p~~ 276 (330)
T 3pnz_A 221 DPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTARK 276 (330)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CHHHHHHHHHcCcEEEEccCcccCCCChHHHHHHHHHHHHcCCCCeEEEeCCCCCC
Confidence 468999999999999999987642 34568889999999999999999995
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.067 Score=68.04 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=48.5
Q ss_pred CceeeecccchhhhhHHHHHHHHHHh-cCCccccEEEEeeeEEcCCCc-eeeeccCCccCcchhhhccChhHHHHHHhcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILRLWVAST 2198 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk~v~~hG~vld~~G~-KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s~ 2198 (2492)
-+|+.++|.||.. |-.+-.-++- .+..| ...+++.++...+|. |||||.||.|+..| .++.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~~---ni~l~rdlarr~~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQRF---NLLVGREVQRAYGQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHHHHTTCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHHH---HHHHHHHHHHHhCCCC-ceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 4799999999973 2222222221 22222 457788898889996 99999999999887 677777766653
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.063 Score=68.27 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=48.1
Q ss_pred CeeeeecccccchhhHHHHHHHHHHh-cCCCCceEEEEeeEEEcCCCc-cccccCCCccCcchhhhhcChhhHHHHhhcc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILRLWVAST 1048 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~-~~~~p~k~v~~hG~vld~~G~-KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~ 1048 (2492)
.+|+.+.|.||.. |-.+..-++- .+.. ....+++.++...+|. |||||.||.|+..| .++.++=.+.+.
T Consensus 187 ~~~l~~gG~DQ~~---ni~l~rdlarr~~~~-~~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQRF---NLLVGREVQRAYGQS-PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHHHHTTCC-CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHHH---HHHHHHHHHHHhCCC-CceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 4899999999973 3232222221 1222 2457788898889996 99999999999887 677777666653
|
| >2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.19 Score=56.47 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=94.7
Q ss_pred ccccHHHHHHHHHHHHhc---cccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccc-cchhhHhHHHHHHHH
Q psy15223 1388 GGVMQKQCEKLLKSFFIK---RRNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCII-QLNNERIIKKRIRWK 1463 (2492)
Q Consensus 1388 ~g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~-~~~~~~~~~~~~r~~ 1463 (2492)
.|=+.-=|..|+..+|.. |++-.+.+..-= +. .-.+.+-+...+-.. .++. .|+-
T Consensus 27 ~GR~DIl~r~l~~al~~s~~~R~dv~vyl~l~~--~p------------~p~~ti~f~g~~v~~v~Pde-------R~~~ 85 (197)
T 2qmm_A 27 AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLG--PP------------SPPKSILIKGDEVRRMSPDE-------RNVA 85 (197)
T ss_dssp TTSHHHHHHHHHHHHEETTEECTTEEEEEEECC--SS------------SCCEEEEEETTTCCSCCSSH-------HHHH
T ss_pred CCCceeHHHHHHHHHhhhhcccCCeEEEEEECC--CC------------CCCeeEEecCCeEEEcChhH-------HHHH
Confidence 666666788888888865 444444333321 11 223344444444322 2222 1555
Q ss_pred HHHHHHHhhhCCCCCCeecc-----CCChhHHHhccc-ccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHH
Q psy15223 1464 NIIISATEQSGRNILPVLAP-----NIYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEE 1537 (2492)
Q Consensus 1464 ~i~~~a~~Q~~r~~~p~i~~-----~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~ 1537 (2492)
..+..|.+-......++..+ -.+|++++.... ....+++++.|...-.. +-+++.++++|--|||+++|.
T Consensus 86 gli~kaL~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~----~~~~~~~fvlGdH~~f~~e~~ 161 (197)
T 2qmm_A 86 GHIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA----QLPPNPLFVIGDHEGLTEEQE 161 (197)
T ss_dssp HHHHHHHHSCCCSSCEEEETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS----CCCSSEEEEEECTTCCCHHHH
T ss_pred HHHHHHHHhccCcccCCCCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchh----hcCCCCEEEEeCCCCCCHHHH
Confidence 66666666522222233322 248888887543 23477888877653221 113577899999999999999
Q ss_pred HHHHHcCCeEeecCCccceeeccchhh
Q psy15223 1538 NLAYECGVIILSLGKRILRTETASLVA 1564 (2492)
Q Consensus 1538 ~~~~~~gf~~vsLG~rILR~ETA~~~~ 1564 (2492)
+++.+.+...+|+||..|=|.+++...
T Consensus 162 ~~l~~~~~~~iSigp~~L~A~~vi~~v 188 (197)
T 2qmm_A 162 KVVERYAALKLSLSPLSLLAEQCVVIA 188 (197)
T ss_dssp HHHHTTCSEEEECCSSCCCHHHHHHHH
T ss_pred HHHHHhcCeEEEECCchhHHHHHHHHH
Confidence 999999999999999999888876554
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.066 Score=67.15 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=38.9
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCceeeeccCC-ccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-vi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
|-+|+.+.|.||.. +..+-.-++ +.... ...+.+.++.+.+|+|||||.|| .|+..|= ++.++=.+.
T Consensus 177 ~~a~~v~~G~DQ~~---~~~l~rdl~~r~~~~~--p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~ 246 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK---IFTFAEKYLPALGYSK--RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLK 246 (372)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCC--CEEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHH
T ss_pred hcCCEEEcChhHHH---HHHHHHHHHHHcCCCC--CEEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHH
Confidence 34689999999984 222222221 22223 34667889888999999999999 6887654 666776665
Q ss_pred c
Q psy15223 2197 S 2197 (2492)
Q Consensus 2197 s 2197 (2492)
+
T Consensus 247 ~ 247 (372)
T 1n3l_A 247 K 247 (372)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.22 Score=55.96 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhhCCCCcceecc-----CCchhHHHhhcc-cccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCH
Q psy15223 329 RWKNIIISATEQSGRNILPVLAP-----NIYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTE 402 (2492)
Q Consensus 329 rw~~i~~ea~~Qs~r~~~p~i~~-----~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~ 402 (2492)
|+-..+..|.+-......++..+ -.+|++++.... ....++++++|...... . -+.+..+++|--|||++
T Consensus 83 ~~~gli~kaL~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~-~---~~~~~~fvlGdH~~f~~ 158 (197)
T 2qmm_A 83 NVAGHIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA-Q---LPPNPLFVIGDHEGLTE 158 (197)
T ss_dssp HHHHHHHHHHHSCCCSSCEEEETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS-C---CCSSEEEEEECTTCCCH
T ss_pred HHHHHHHHHHHhccCcccCCCCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchh-h---cCCCCEEEEeCCCCCCH
Confidence 44445555554421222333333 357788876543 23477888887753221 1 13577899999999999
Q ss_pred HHHHHHHHcCceEeecCcceeeccccchhhee
Q psy15223 403 KEENLAYECGVIILSLGKRILRTETASLVALA 434 (2492)
Q Consensus 403 ~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~~ 434 (2492)
+|.+.+...+...+|+||..|=|.++...+..
T Consensus 159 e~~~~l~~~~~~~iSigp~~L~A~~vi~~vh~ 190 (197)
T 2qmm_A 159 EQEKVVERYAALKLSLSPLSLLAEQCVVIAHH 190 (197)
T ss_dssp HHHHHHHTTCSEEEECCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCeEEEECCchhHHHHHHHHHHH
Confidence 99999999999999999999999998876543
|
| >4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.16 Score=60.55 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=54.2
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccC--CCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITR--NDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRL 138 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~--~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi 138 (2492)
.+.+|||++. .||+|+ +|.|-...+ -..+.|||..||-+|...... .+ ..+.+..-||-+|-.-|.+.+-
T Consensus 72 S~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~-~i---~~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 72 SEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK-GV---ADITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp TCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS-CE---EEEEESSCCCHHHHHHHTTBTT
T ss_pred CCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC-ce---EEEEeecCCCHHHHHHHHHhcC
Confidence 4789999998 688866 899976432 234789999999999876432 33 3577789999999999998763
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.071 Score=66.87 Aligned_cols=70 Identities=23% Similarity=0.177 Sum_probs=38.3
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCC-ccCcchhhhhcChhhHHHHhhc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGN-IIKPQKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN-~i~p~~ii~~yGaD~lRl~l~s 1047 (2492)
|-+|+.+.|.||.. ++....-....+.... ...+++.++.+.+|+|||||.|| .|+..|= ++.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~--p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRK-IFTFAEKYLPALGYSK--RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC--CEEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred hcCCEEEcChhHHH-HHHHHHHHHHHcCCCC--CEEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 34789999999984 2221111111222223 34667889989999999999999 6877654 5666655554
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.098 Score=62.68 Aligned_cols=52 Identities=50% Similarity=0.945 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.+++++++++|+|++++|.+++++...+++++..+|.+|++.+||.||+.+.
T Consensus 161 ~~~~~~~~~~g~~~~~sg~~~~~~~~~~~~~~~~~~~drll~~TD~P~~~~~ 212 (265)
T 1yix_A 161 RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPV 212 (265)
T ss_dssp HHHHHHHHTTTCEEEECGGGGSTTCHHHHHHHHHSCGGGEEECCCBTSCCCT
T ss_pred HHHHHHHHHCCcEEEECCccccCchHHHHHHHHhCChHHEEEecCCCCCCCc
Confidence 5788999999999999999999888889999999999999999999998664
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.086 Score=65.15 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=46.2
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcC---CccccEEEE-eeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNK---SAPYKALLT-HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~---~~pfk~v~~-hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
|-+|+...|.||.... +.+-+....- ..+ ..| ..+++ +.++.+.+|+|||||.||.|+..| .++.++=
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 4579999999998411 1122222221 113 122 23344 578888899999999999998877 6777777
Q ss_pred HHhc
Q psy15223 2194 WVAS 2197 (2492)
Q Consensus 2194 ~l~s 2197 (2492)
.+.+
T Consensus 226 Ki~~ 229 (340)
T 2g36_A 226 TILR 229 (340)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6664
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.077 Score=65.61 Aligned_cols=71 Identities=27% Similarity=0.317 Sum_probs=45.2
Q ss_pred cCeeeeecccccchhhHH--HHHHHHHH-hcC---CCCceEEEE-eeEEEcCCCccccccCCCccCcchhhhhcChhhHH
Q psy15223 970 FPADLYLEGSDQHRGWFH--SSLLTSII-LNK---SAPYKALLT-HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~--s~l~~~~~-~~~---~~p~k~v~~-hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lR 1042 (2492)
|-+|+...|.||.. ++. +-+..... ..| ..| ..+++ +.++.+.+|+|||||.||.|+..| .++.++
T Consensus 152 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~ 224 (340)
T 2g36_A 152 YKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELE 224 (340)
T ss_dssp TTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHH
T ss_pred hCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHH
Confidence 45799999999984 222 11222211 113 122 33344 577888899999999999998877 566666
Q ss_pred HHhhc
Q psy15223 1043 LWVAS 1047 (2492)
Q Consensus 1043 l~l~s 1047 (2492)
=.+.+
T Consensus 225 ~Ki~~ 229 (340)
T 2g36_A 225 QTILR 229 (340)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65554
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.083 Score=66.77 Aligned_cols=68 Identities=25% Similarity=0.208 Sum_probs=36.6
Q ss_pred cCceeeecccchhhhhHHHHHHHHH--HhcCCccccEEEEeeeEEcCC-CceeeeccCCc-cCcchhhhccChhHHHHHH
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSI--ILNKSAPYKALLTHGFVVDSK-GKKMSKSKGNI-IKPQKLCNLFGAEILRLWV 2195 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~--~l~~~~pfk~v~~hG~vld~~-G~KMSKS~GNv-i~p~~ii~~yGaD~lR~~l 2195 (2492)
|.+|+.+.|.||.. +..+-.-+ .+.... ...+.|.++.+.+ |+|||||.||. |+..|- ++.+|=-+
T Consensus 181 ~~~~~v~~G~DQ~~---~~~l~rdl~~r~~~~~--p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kKI 250 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK---IFVLAEENLPSLGYKK--RAHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKKI 250 (394)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHGGGGTCCC--CEEEEECCCCCCC----------CCSCBTTCC-----HHHHHHHH
T ss_pred hCCCEEecCccHHH---HHHHHHHHHHHcCCCC--CEEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHHH
Confidence 45789999999984 22222222 222222 4567788888888 99999999996 887653 55666555
Q ss_pred hc
Q psy15223 2196 AS 2197 (2492)
Q Consensus 2196 ~s 2197 (2492)
.+
T Consensus 251 ~k 252 (394)
T 2dlc_X 251 NS 252 (394)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.097 Score=64.21 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=45.0
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHHh-cCC-ccc-cEEE--EeeeEEcCCCceeeeccCCccCcchhhhccChhHHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSIIL-NKS-APY-KALL--THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRL 2193 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~l-~~~-~pf-k~v~--~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 2193 (2492)
|-+|+...|.||.... +.+-+....-. .+. -|- +.++ ++.++.+.+|+|||||.||.|+..| .++.++=
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~~ 212 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLKK 212 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHHH
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHHH
Confidence 4479999999998421 11222222211 121 111 2333 3678888899999999999998876 4666766
Q ss_pred HHhc
Q psy15223 2194 WVAS 2197 (2492)
Q Consensus 2194 ~l~s 2197 (2492)
.+.+
T Consensus 213 KI~~ 216 (322)
T 3tzl_A 213 QISS 216 (322)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6653
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.085 Score=64.71 Aligned_cols=71 Identities=23% Similarity=0.223 Sum_probs=43.4
Q ss_pred cCeeeeecccccchhhHH--HHHHHHHHh-cCC-CCc-eEEE--EeeEEEcCCCccccccCCCccCcchhhhhcChhhHH
Q psy15223 970 FPADLYLEGSDQHRGWFH--SSLLTSIIL-NKS-APY-KALL--THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 1042 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~--s~l~~~~~~-~~~-~p~-k~v~--~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lR 1042 (2492)
|-+|+...|.||.. ++. +-+....-. .+. -|- +.++ ++.++.+.+|+|||||.||.|+..| .++.++
T Consensus 138 ~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 45799999999984 221 122222111 121 111 3343 3678888999999999999998765 355555
Q ss_pred HHhh
Q psy15223 1043 LWVA 1046 (2492)
Q Consensus 1043 l~l~ 1046 (2492)
=.+.
T Consensus 212 ~KI~ 215 (322)
T 3tzl_A 212 KQIS 215 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.09 Score=66.46 Aligned_cols=69 Identities=23% Similarity=0.178 Sum_probs=35.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCC-CccccccCCCc-cCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSK-GKKMSKSKGNI-IKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~-G~KMSKS~GN~-i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
|.+|+.+.|.||.. ++....-....+... -...++|.++.+.+ |+|||||.||. |+..|= ++.+|=-+.
T Consensus 181 ~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~--~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kKI~ 251 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK-IFVLAEENLPSLGYK--KRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKKIN 251 (394)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCC--CCEEEEECCCCCCC----------CCSCBTTCC-----HHHHHHHHH
T ss_pred hCCCEEecCccHHH-HHHHHHHHHHHcCCC--CCEEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHHHH
Confidence 45789999999984 222222122222222 24566788888889 99999999996 877653 444554444
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.14 Score=61.28 Aligned_cols=52 Identities=46% Similarity=0.773 Sum_probs=47.2
Q ss_pred HHHHHHHHH-cCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 2 LDVAREIIE-LGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 2 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
.++++++++ .|+|++++|.+++.++..+++++...|.+|++.+||.||+.+.
T Consensus 159 ~~~~~~~l~~~~~y~~~sg~~~~~~~~~~~~~i~~~~~dril~gSD~P~~~~~ 211 (265)
T 2gzx_A 159 PEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPH 211 (265)
T ss_dssp HHHHHHHHHTSCCEEEECGGGGCSSCCHHHHHHHHSCTTTEEECCCTTSCCCT
T ss_pred HHHHHHHHHHCCceEEecceeecCCcHHHHHHHHhCChhhEEEccCCCCCCCc
Confidence 578889999 8999999999998877789999999999999999999998764
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.42 E-value=0.17 Score=62.46 Aligned_cols=72 Identities=26% Similarity=0.213 Sum_probs=43.5
Q ss_pred cCeeeeecccccchhhHHHH--HHHHHH-hcCC-CCceEEEEe---eEEEcCCC-ccccccCCCccCcchhhhhcChhhH
Q psy15223 970 FPADLYLEGSDQHRGWFHSS--LLTSII-LNKS-APYKALLTH---GFVVDSKG-KKMSKSKGNIIKPQKLCNLFGAEIL 1041 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~--l~~~~~-~~~~-~p~k~v~~h---G~vld~~G-~KMSKS~GN~i~p~~ii~~yGaD~l 1041 (2492)
|-+|+...|.||.. ++... +....- ..|. .+-...+++ .++.+.+| +|||||.||.|+..|= ++.+
T Consensus 140 ~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~i 213 (337)
T 2el7_A 140 YKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EESI 213 (337)
T ss_dssp TTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHHH
T ss_pred hCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcCC-----HHHH
Confidence 45899999999984 22211 111110 1131 111233333 58888899 9999999999987763 5566
Q ss_pred HHHhhc
Q psy15223 1042 RLWVAS 1047 (2492)
Q Consensus 1042 Rl~l~s 1047 (2492)
+=.+.+
T Consensus 214 ~~Ki~~ 219 (337)
T 2el7_A 214 WQKIQH 219 (337)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655554
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=0.15 Score=62.54 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=43.3
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCC-ceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG-KKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G-~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
-+|+.+.|.||.. +..+..-+ .. |-..++.+.++.+.+| +|||||.||.|+..|- +|.+|==+.
T Consensus 163 ~~~~v~~G~DQ~~---~~~l~R~i--~~--~~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~-----~~~i~~KI~ 227 (314)
T 2zp1_A 163 GVDVAVGGMEQRK---IHMLAREL--LP--KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS-----PEEIRAKIK 227 (314)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHH--SS--SCCEEEEECCCBCTTSSSBCCTTTTCSCBTTCC-----HHHHHHHHH
T ss_pred CCCEEEcChhHHH---HHHHHHHh--cC--CCcEEeeccccccCCcccccCCCCcceecCCCC-----HHHHHHHHH
Confidence 3689999999985 22333222 22 2234577788888899 7999999999987653 455554444
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.33 E-value=0.19 Score=62.10 Aligned_cols=73 Identities=26% Similarity=0.204 Sum_probs=44.4
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcCC-ccccEEEEe---eeEEcCCC-ceeeeccCCccCcchhhhccChhHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNKS-APYKALLTH---GFVVDSKG-KKMSKSKGNIIKPQKLCNLFGAEILR 2192 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~~-~pfk~v~~h---G~vld~~G-~KMSKS~GNvi~p~~ii~~yGaD~lR 2192 (2492)
|-+|+...|.||.... +.+-+....- ..|. .+-+..+++ .++.+.+| +|||||.||.|+..|- ++.++
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~i~ 214 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EESIW 214 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHHHH
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcCC-----HHHHH
Confidence 4579999999998411 1111121111 1131 111233333 58888899 9999999999988763 66777
Q ss_pred HHHhc
Q psy15223 2193 LWVAS 2197 (2492)
Q Consensus 2193 ~~l~s 2197 (2492)
=.+.+
T Consensus 215 ~Ki~~ 219 (337)
T 2el7_A 215 QKIQH 219 (337)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66654
|
| >3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.42 Score=53.31 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCcHHHHHHHHHHHh-ccCcccCCCeEEEEcCCChHhHHHHHHHh-----CCceEEEecCCCCC-CccchhhhHHhhcCC
Q psy15223 93 TAHAEIIALRMASKL-LNNYRFSKNYKIYVTLEPCAMCAGAIIHV-----RLGEIIYGTPSFKT-GACGSIINLFQEKKL 165 (2492)
Q Consensus 93 ~~HaE~~ai~~a~~~-~~~~~l~~~~~ly~t~EPC~mC~~ai~~~-----gi~rvv~g~~~~~~-~~~g~~~~~~~~~~~ 165 (2492)
..|||+.-|.+.... +.+..-. .-|-|+|..||+-||..|+.. ++.=.+|.+.--.. ...-.|...|.++|+
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y-~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~~~~~~~gLr~L~~aG~ 156 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDY-RVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRCQEGLRTLAEAGA 156 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeE-EEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeecccCchHHHHHHHHHHCCC
Confidence 579999999988753 3221111 367899999999999999885 34434444331111 112346788888887
Q ss_pred CceeEEeccccHHHHHHHHHHHHHh-ccCcccccccc
Q psy15223 166 NHHTILTGGVMQKQCEKLLKSFFIK-RRNFVKNKSIN 201 (2492)
Q Consensus 166 ~~~~~v~~gv~~~e~~~l~~~~~~~-~~~~~~~~~a~ 201 (2492)
...+ . --.|=.--...|... .+||.+.+...
T Consensus 157 ~v~i--M---~~~ef~~CW~~FV~nqg~pF~PW~~L~ 188 (203)
T 3v4k_A 157 KISI--M---TYSEFKHCWDTFVDHQGAPFQPWDGLD 188 (203)
T ss_pred eEEe--c---CHHHHHHHHHHHccCCCCCCCchhHHH
Confidence 6433 1 234555566777754 57888776655
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.16 Score=62.31 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=38.8
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC-ccccccCCCccCcchh
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG-KKMSKSKGNIIKPQKL 1032 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G-~KMSKS~GN~i~p~~i 1032 (2492)
-+|+.+.|.||.. +..+..-+ .. |-..++++.++.+.+| +|||||.||.|+..|=
T Consensus 163 ~~~~v~~G~DQ~~---~~~l~R~i--~~--~~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~ 218 (314)
T 2zp1_A 163 GVDVAVGGMEQRK---IHMLAREL--LP--KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 (314)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHH--SS--SCCEEEEECCCBCTTSSSBCCTTTTCSCBTTCC
T ss_pred CCCEEEcChhHHH---HHHHHHHh--cC--CCcEEeeccccccCCcccccCCCCcceecCCCC
Confidence 4789999999984 22332222 22 2234577888889999 7999999999987653
|
| >4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.36 Score=57.53 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccC-cccCCCeEEEEc----CCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNN-YRFSKNYKIYVT----LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~-~~l~~~~~ly~t----~EPC~mC~~ai~~~g 137 (2492)
.+.+|||+|. +||+|. +|.|-.....+++..||..||-++...+.. ..+. ...+... .-||.+|-..|...+
T Consensus 211 S~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~-aiv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 211 TQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIE-AAALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp TCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEE-EEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred cCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeE-EEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 3679999999 688866 899988888899999999999999876432 1232 2333322 248999999998875
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=0.12 Score=64.15 Aligned_cols=70 Identities=30% Similarity=0.307 Sum_probs=42.2
Q ss_pred cCeeeeecccccchhhHHHH--HHHHHH-hcC---CCCceEEEE-eeEEEcCCCc-cccccCCCccCcchhhhhcChhhH
Q psy15223 970 FPADLYLEGSDQHRGWFHSS--LLTSII-LNK---SAPYKALLT-HGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEIL 1041 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~--l~~~~~-~~~---~~p~k~v~~-hG~vld~~G~-KMSKS~GN~i~p~~ii~~yGaD~l 1041 (2492)
|-+|+...|.||.. ++... +....- ..| ..| ..+++ +.++.+.+|+ |||||.||.|+..|= ++.+
T Consensus 161 ~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i 233 (351)
T 1yi8_B 161 FGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEV 233 (351)
T ss_dssp HTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHH
T ss_pred cCCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHH
Confidence 35799999999984 22211 111111 123 122 34454 5678888997 999999998876653 4445
Q ss_pred HHHhh
Q psy15223 1042 RLWVA 1046 (2492)
Q Consensus 1042 Rl~l~ 1046 (2492)
+=.+.
T Consensus 234 ~~Ki~ 238 (351)
T 1yi8_B 234 ARKVM 238 (351)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.53 E-value=0.19 Score=62.79 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=37.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCce-EEEEeeEEEcC-CCc-cccccC-CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFVVDS-KGK-KMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~hG~vld~-~G~-KMSKS~-GN~i~p~~ 1031 (2492)
+-+|+.+.|.||-. |-.+..-++-.-...|+ .++++.++.+. +|. |||||. +|.|+..|
T Consensus 199 l~ad~vpgG~DQ~~---~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDICQLGIDQRK---VNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEEEcchhhHH---HHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC
Confidence 34789999999984 33333222221112232 46778888885 885 999999 57887653
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=0.13 Score=63.81 Aligned_cols=72 Identities=29% Similarity=0.253 Sum_probs=43.7
Q ss_pred cCceeeecccchhhhh-HHHHHHHHHH-hcC---CccccEEEE-eeeEEcCCCc-eeeeccCCccCcchhhhccChhHHH
Q psy15223 2120 FPADLYLEGSDQHRGW-FHSSLLTSII-LNK---SAPYKALLT-HGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILR 2192 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~w-f~~~l~~~~~-l~~---~~pfk~v~~-hG~vld~~G~-KMSKS~GNvi~p~~ii~~yGaD~lR 2192 (2492)
|-+|+...|.||.... +.+-+....- ..| ..| ..+++ +.++.+.+|+ |||||.||.|+..|= ++.++
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~ 234 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVA 234 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHH
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHH
Confidence 3479999999998411 1111121111 123 122 33444 5688888997 999999998887654 66666
Q ss_pred HHHhc
Q psy15223 2193 LWVAS 2197 (2492)
Q Consensus 2193 ~~l~s 2197 (2492)
=.+.+
T Consensus 235 ~Ki~~ 239 (351)
T 1yi8_B 235 RKVMG 239 (351)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55553
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.30 E-value=0.21 Score=62.48 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=41.9
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-cCCcccc-EEEEeeeEEcC-CCc-eeeecc-CCccCcchhhhccChhHHHHH
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYK-ALLTHGFVVDS-KGK-KMSKSK-GNIIKPQKLCNLFGAEILRLW 2194 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk-~v~~hG~vld~-~G~-KMSKS~-GNvi~p~~ii~~yGaD~lR~~ 2194 (2492)
+-+|+..+|.||.. |-.+..-++- ++. .|+ .++++.++.+. +|. |||||. +|.|+..|- ++.+|==
T Consensus 199 l~ad~vpgG~DQ~~---~l~l~Rdla~r~~~-~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~-----p~~i~~K 269 (373)
T 3vgj_A 199 LNVDICQLGIDQRK---VNMLAREYCDIKKI-KKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS-----ESDVNRK 269 (373)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHHTC-SCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCC-----HHHHHHH
T ss_pred cCCcEEEcchhhHH---HHHHHHHHHHHhCC-CCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCCC-----HHHHHHH
Confidence 34789999999984 3333322221 122 222 46778888885 885 999999 578876543 4455544
Q ss_pred Hh
Q psy15223 2195 VA 2196 (2492)
Q Consensus 2195 l~ 2196 (2492)
+.
T Consensus 270 I~ 271 (373)
T 3vgj_A 270 IK 271 (373)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=88.56 E-value=0.18 Score=63.21 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=32.2
Q ss_pred ceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCCccCcchhhhccChhHHHHHH
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGNIIKPQKLCNLFGAEILRLWV 2195 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GNvi~p~~ii~~yGaD~lR~~l 2195 (2492)
+|+..+|.||-. |-.+..-++ +....| .++.+.++.+.+| .|||||.||.|+..| .++.++==+
T Consensus 225 ~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI 292 (395)
T 3i05_A 225 FCLIPQAIDQDP---YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKI 292 (395)
T ss_dssp EEEEEEEGGGHH---HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC-----CHHHHHHHH
T ss_pred ceEEEeccchHH---HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHH
Confidence 789999999984 222222222 233333 4677888888899 799999999998765 345555333
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=0.22 Score=63.37 Aligned_cols=57 Identities=28% Similarity=0.223 Sum_probs=33.8
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++...+| +|||||.|| .|++.|
T Consensus 248 ~~~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP---YFRVCRDVADKLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH---HHHHHHHHHHHHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH---HHHHHHHHHHHhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 45788999999984 222222222 222344 3577889889999 999999999 787765
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=88.22 E-value=0.19 Score=63.05 Aligned_cols=55 Identities=27% Similarity=0.253 Sum_probs=27.9
Q ss_pred eeeeecccccchhhHHHHHHHHH--HhcCCCCceEEEEeeEEEcCCC--ccccccCCCccCcch
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSI--ILNKSAPYKALLTHGFVVDSKG--KKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~--~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN~i~p~~ 1031 (2492)
+|+...|.||-. +-.+..-+ -+....| .++++.++...+| .|||||.||.|+..|
T Consensus 225 ~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDP---YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHH---HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHH---HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 789999999984 22222222 2233333 4677888888899 799999999997655
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.22 Score=63.30 Aligned_cols=57 Identities=28% Similarity=0.216 Sum_probs=34.0
Q ss_pred cCeeeeecccccchhhHHHHHHHHH--HhcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSI--ILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~--~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~ 1031 (2492)
|-+++...|.||-. |-.+..-+ -+....| .++++.++...+| +|||||.|| .|+..|
T Consensus 248 ~~~~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP---YFRVCRDVADKLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH---HHHHHHHHHHHHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH---HHHHHHHHHHHhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 55889999999984 22222222 2222345 3578889999999 999999999 787655
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.89 E-value=0.26 Score=61.69 Aligned_cols=57 Identities=25% Similarity=0.075 Sum_probs=37.7
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
+|+...|.||.. |-.+..-++-.-.-+-...+.+.++.+.+| .|||||.+| .|...|
T Consensus 208 a~~vpvG~DQ~~---hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDP---YWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHH---HHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHH---HHHHHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCC
Confidence 688899999984 333333333211112234667888888888 699999998 876543
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.27 Score=61.53 Aligned_cols=56 Identities=25% Similarity=0.073 Sum_probs=37.4
Q ss_pred eeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcc
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQ 1030 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~ 1030 (2492)
+|+...|.||.. |-.+..-++-.-+-+-...+++.++...+| .|||||.+| .|...
T Consensus 208 a~~vpvG~DQ~~---hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 208 RCLIPAAIDQDP---YWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp CEEEEEEGGGHH---HHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred CceeecccchHH---HHHHHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCC
Confidence 788899999983 333333333221112234667888888888 599999999 88654
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.75 E-value=0.3 Score=60.95 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=43.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCC-----------------Ccccccc-CCCccCc
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSK-----------------GKKMSKS-KGNIIKP 1029 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~-----------------G~KMSKS-~GN~i~p 1029 (2492)
|-+|+.+.|.||.. |-.+..-++ +....| .+++|.++.+.+ |+||||| .+|.|+.
T Consensus 176 ~~~~~v~~G~DQ~~---~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L 250 (364)
T 2cya_A 176 MDLDIALGGMDQRK---AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFV 250 (364)
T ss_dssp TTCSEEEEEGGGHH---HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBT
T ss_pred cCCCEEeccchHHH---HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeec
Confidence 34789999999984 333332222 222333 357788888887 7999999 7899987
Q ss_pred chhhhhcChhhHHHHhhc
Q psy15223 1030 QKLCNLFGAEILRLWVAS 1047 (2492)
Q Consensus 1030 ~~ii~~yGaD~lRl~l~s 1047 (2492)
.|= ++.++=.+.+
T Consensus 251 ~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 251 VDS-----DDDIRRKIRK 263 (364)
T ss_dssp TCC-----HHHHHHHHHT
T ss_pred cCC-----HHHHHHHHHh
Confidence 654 5555555543
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=87.75 E-value=0.28 Score=60.86 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=38.2
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcC-CC-ccccccC-CCccCcch
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDS-KG-KKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~-~G-~KMSKS~-GN~i~p~~ 1031 (2492)
-+|+.+.|.||.. |-.+..-++-.-...+..++.+.++... +| .|||||. ||.|+..|
T Consensus 186 ~~~~~~~G~DQ~~---~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRK---VNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHH---HHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHH---HHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEeecC
Confidence 4789999999984 2233333332222333456777888877 56 7999999 58887654
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=87.58 E-value=0.3 Score=60.59 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=37.7
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcC-CC-ceeeecc-CCccCcch
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDS-KG-KKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~-~G-~KMSKS~-GNvi~p~~ 2181 (2492)
-+|+..+|.||.. |-.+..-++-.-...+..++.+.++.+. +| .|||||. ||.|+..|
T Consensus 186 ~~~~~~~G~DQ~~---~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRK---VNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHH---HHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHH---HHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEeecC
Confidence 3689999999984 2233333332222233456777788877 56 7999999 58887654
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.58 E-value=0.32 Score=60.77 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=44.3
Q ss_pred CceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCC-----------------Cceeeec-cCCccCcc
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSK-----------------GKKMSKS-KGNIIKPQ 2180 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~-----------------G~KMSKS-~GNvi~p~ 2180 (2492)
-+|+.+.|.||.. |-.+..-++ +....| .++.+.++.+.+ |+||||| .+|.|+..
T Consensus 177 ~~~~v~~G~DQ~~---~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 177 DLDIALGGMDQRK---AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred CCCEEeccchHHH---HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 4789999999984 333332222 222333 357778888777 7999999 78999877
Q ss_pred hhhhccChhHHHHHHhc
Q psy15223 2181 KLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2181 ~ii~~yGaD~lR~~l~s 2197 (2492)
|- ++.++=.+.+
T Consensus 252 d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 252 DS-----DDDIRRKIRK 263 (364)
T ss_dssp CC-----HHHHHHHHHT
T ss_pred CC-----HHHHHHHHHh
Confidence 64 6666666654
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.55 E-value=0.33 Score=61.02 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=38.4
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeecc-CCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSK-GNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~-GNvi~p~~ 2181 (2492)
|-+|+...|.||.. |-.+..-++ +.... ..++.+.++.+.+| .|||||. +|.|+..|
T Consensus 242 ~~a~lvpvG~DQ~~---~i~l~Rdla~r~~~~~--p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 242 GAMCLVPAAVDQDP---FFRLARDKAKALGEKK--PSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCC--CEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCCeEEeeccchHH---HHHHHHHHHHHcCCCC--ceeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 45788999999984 222222222 22223 34667888888899 6999999 68887654
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=86.47 E-value=0.42 Score=60.67 Aligned_cols=57 Identities=26% Similarity=0.188 Sum_probs=38.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++.+.+| .|||||.|| .|+..|
T Consensus 255 ~~~~lVpvG~DQ~~---~i~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHH---HHHHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 34566668999984 333333332 222334 4578889999999 899999999 788765
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=86.37 E-value=0.35 Score=60.64 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=26.0
Q ss_pred eeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcch
Q psy15223 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 2181 (2492)
Q Consensus 2123 Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~ 2181 (2492)
++..+|.||.. |-.+..-++-.-..|-..++.+.++.+.+| .|||||.+| .|+..|
T Consensus 222 ~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP---YFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH---HHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH---HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 45689999984 233333222211222234678888888899 799999998 787654
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.31 E-value=0.36 Score=60.66 Aligned_cols=59 Identities=20% Similarity=0.091 Sum_probs=38.4
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC--ccccccC-CCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSK-GNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G--~KMSKS~-GN~i~p~~ 1031 (2492)
+-+|+...|.||-. |-.+..-++-.-..|-..++++.++...+| .|||||. +|.|+..|
T Consensus 242 ~~a~lvpvG~DQ~~---~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 242 GAMCLVPAAVDQDP---FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCCeEEeeccchHH---HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 45789999999984 222222222111122234567888888899 6999999 68887654
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=86.25 E-value=0.43 Score=60.55 Aligned_cols=57 Identities=26% Similarity=0.159 Sum_probs=38.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHh--cCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIIL--NKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~--~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~ 1031 (2492)
|-+++...|.||.. |-.+..-++- ....| .++++.++...+| .|||||.|| .|+..|
T Consensus 255 ~~~~lVpvG~DQ~~---~i~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHH---HHHHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 44667778999983 3333332222 22334 4578899999999 899999999 787654
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=85.42 E-value=0.51 Score=58.98 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=37.7
Q ss_pred eeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCCCc-ccccc-CCCccCcch
Q psy15223 972 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGK-KMSKS-KGNIIKPQK 1031 (2492)
Q Consensus 972 ~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~G~-KMSKS-~GN~i~p~~ 1031 (2492)
+++...|.||.. |-.+..-++ +....| .++.+.++...+|. ||||| .||.|...|
T Consensus 225 a~~VpvG~DQ~~---hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQ---FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHH---HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 666667999984 333332222 233444 66788888888995 99999 899997654
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=85.41 E-value=0.4 Score=60.16 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=25.8
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcch
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQK 1031 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~ 1031 (2492)
++...|.||-. |-.+..-++-.-..|-..++++.++.+.+| .|||||.+| .|+..|
T Consensus 222 ~lvp~G~DQ~~---~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP---YFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH---HHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH---HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 45689999984 223322222221222235678888888899 799999998 776543
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=84.89 E-value=0.56 Score=60.46 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=38.8
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCC--ceeeeccCC-ccCcchh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQKL 2182 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~~i 2182 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++.+.+| .|||||.|| .|++.|=
T Consensus 302 ~~~~~VpvG~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHH---HHHHHHHHHHHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 34566668999984 223333222 222344 3677889999999 899999999 7876643
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=84.79 E-value=0.38 Score=59.15 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=35.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--h---cC-CCCc-eEEEE--eeEEEcCCC--ccccccCCC-c--cCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--L---NK-SAPY-KALLT--HGFVVDSKG--KKMSKSKGN-I--IKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~---~~-~~p~-k~v~~--hG~vld~~G--~KMSKS~GN-~--i~p~~ 1031 (2492)
|-+|+...|.||.. + -.+..-++ + .| ..+- .-+++ +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~-~--iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQ-H--IELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHH-H--HHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHH-H--HHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 45899999999984 2 22221111 1 12 1111 23332 567778888 999999999 6 76543
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=0.54 Score=58.53 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=43.8
Q ss_pred CHHHHHHHHHcCcEEEecccc---------cccccHHHHHHhhhcccCccccccCC-------CCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIV---------TFKNSKILQKVMGSISLKNMLIETDS-------PYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~etD~-------~~M~~a~ 54 (2492)
+.+.+++++++|+|+||.+.- ++++...+++++...|.+|+++++|. ||+.|..
T Consensus 246 d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~py~~p~p 315 (360)
T 3tn4_A 246 DPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPEP 315 (360)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCHH
T ss_pred CHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHHHHHHhcCcceEEEecCCCcccccCCCCCccc
Confidence 467899999999999998632 24555678999999999999999998 7776543
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=84.64 E-value=0.56 Score=58.64 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=42.4
Q ss_pred ceeeecccchhhhhHHHHHHHHHH--hcCCccccEEEEeeeEEcCCCc-eeeec-cCCccCcchhhhccChhHHHHHHh
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKGK-KMSKS-KGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~--l~~~~pfk~v~~hG~vld~~G~-KMSKS-~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
+++...|.||.. |-.+..-++ +....| .++.+.++.+.+|. ||||| .||.|...| .++.++=-+.
T Consensus 225 a~~VpvG~DQ~~---hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~ 293 (386)
T 3hzr_A 225 RCLVLDSIKNVQ---FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKIN 293 (386)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHH
T ss_pred ccccccccchHH---HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHH
Confidence 566666999984 333332222 233444 56688888888885 99999 899998765 3555554443
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=84.57 E-value=0.38 Score=59.67 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=41.5
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--h---cCC-ccccEEEE---eeeEEcCCC--ceeeeccCC---ccCcchhhhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--L---NKS-APYKALLT---HGFVVDSKG--KKMSKSKGN---IIKPQKLCNL 2185 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l---~~~-~pfk~v~~---hG~vld~~G--~KMSKS~GN---vi~p~~ii~~ 2185 (2492)
|-+|+...|.||.. |-.+..-++ + +|. .+-...++ +.++.+.+| +|||||.|| .|++.|=
T Consensus 146 ~~a~~vpvG~DQ~~---~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~--- 219 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQ---HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDP--- 219 (348)
T ss_dssp TCCSEEECCGGGHH---HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCC---
T ss_pred hCccEEEecccHHH---HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCC---
Confidence 45799999999984 222222111 1 121 11223333 567777888 999999999 7877643
Q ss_pred cChhHHHHHHh
Q psy15223 2186 FGAEILRLWVA 2196 (2492)
Q Consensus 2186 yGaD~lR~~l~ 2196 (2492)
+|.+|==+.
T Consensus 220 --~~~i~~KI~ 228 (348)
T 2yy5_A 220 --KEVVVKKIR 228 (348)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 445554444
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=84.53 E-value=0.58 Score=60.26 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=39.0
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--hcCCCCceEEEEeeEEEcCCC--ccccccCCC-ccCcchh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--LNKSAPYKALLTHGFVVDSKG--KKMSKSKGN-IIKPQKL 1032 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~~~~~p~k~v~~hG~vld~~G--~KMSKS~GN-~i~p~~i 1032 (2492)
|-+++...|.||.. |-.+..-++ +....| .++++.++...+| .|||||.|| .|+..|=
T Consensus 302 ~~~~~VpvG~DQ~~---~i~l~Rdla~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDP---YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHH---HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHH---HHHHHHHHHHHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 45667778999984 223332222 222344 3578889999999 899999999 7876543
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=84.42 E-value=0.42 Score=58.78 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=35.7
Q ss_pred cCceeeecccchhhhhHHHHHHHHHH--h---cCC-ccccE-EEE--eeeEEcCCC--ceeeeccCC-c--cCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSII--L---NKS-APYKA-LLT--HGFVVDSKG--KKMSKSKGN-I--IKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~--l---~~~-~pfk~-v~~--hG~vld~~G--~KMSKS~GN-v--i~p~~ 2181 (2492)
|-+|+...|.||.. |-.+..-++ + ++. .+... +++ +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~---~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQ---HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHH---HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHH---HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 45799999999984 222222111 1 121 11123 332 567778888 999999999 6 77654
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=83.72 E-value=0.38 Score=59.62 Aligned_cols=59 Identities=27% Similarity=0.348 Sum_probs=36.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHH--h---cCC-CCceEEEE---eeEEEcCCC--ccccccCCC---ccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSII--L---NKS-APYKALLT---HGFVVDSKG--KKMSKSKGN---IIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~--~---~~~-~p~k~v~~---hG~vld~~G--~KMSKS~GN---~i~p~~ 1031 (2492)
|-+|+...|.||.. |-.+..-++ + .|. .+-...++ +.++.+.+| +|||||.|| .|...|
T Consensus 146 ~~a~~vpvG~DQ~~---~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQ---HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHH---HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHH---HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 45899999999984 222222111 1 121 11223333 467777888 999999999 787654
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=83.69 E-value=0.47 Score=60.15 Aligned_cols=53 Identities=28% Similarity=0.273 Sum_probs=35.1
Q ss_pred eeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCc--eeeeccCC-ccCc
Q psy15223 2124 LYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSKGN-IIKP 2179 (2492)
Q Consensus 2124 l~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~--KMSKS~GN-vi~p 2179 (2492)
+...|.||.. |-.+..-++-.-..|-..++.+.++.+.+|. |||||.+| .|..
T Consensus 290 ~VPvG~DQ~~---hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP---YFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH---HHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH---HHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 5677999995 4444444443222333456778888888885 99999998 5654
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=83.29 E-value=0.47 Score=60.17 Aligned_cols=54 Identities=28% Similarity=0.249 Sum_probs=35.7
Q ss_pred eeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCc--cccccCCC-ccCc
Q psy15223 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK--KMSKSKGN-IIKP 1029 (2492)
Q Consensus 973 Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~--KMSKS~GN-~i~p 1029 (2492)
.+...|.||.. |-.+..-++-.-+.|-..++.+.++.+.+|. |||||.+| .|..
T Consensus 289 ~~VPvG~DQ~~---hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 289 CLIASGIEQDP---YFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEEECTTTHH---HHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred ceeeeecchHH---HHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 35677999994 3344444443333344456778888888885 99999998 5654
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=83.06 E-value=0.8 Score=55.41 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=42.4
Q ss_pred CHHHHHHHHHcCcEEEeccc--c-ccc---ccHHHHHHhhhcccCccccccCCCCCC
Q psy15223 1 SLDVAREIIELGFYISFSGI--V-TFK---NSKILQKVMGSISLKNMLIETDSPYLS 51 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~--~-~~~---~~~~~~~~~~~~p~~~~~~etD~~~M~ 51 (2492)
+.+++++++++|+||+|+|. + +++ +...+++++...|+++++.+||.|++.
T Consensus 191 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~ 247 (291)
T 1bf6_A 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRS 247 (291)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred CHHHHHHHHHCCCEEEEccCcccCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCCc
Confidence 46889999999999999976 3 233 455688999999999999999999863
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=0.65 Score=62.49 Aligned_cols=57 Identities=28% Similarity=0.292 Sum_probs=37.4
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCce-EEEEeeEEEcC-CCc-cccccCC-CccCcc
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK-ALLTHGFVVDS-KGK-KMSKSKG-NIIKPQ 1030 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k-~v~~hG~vld~-~G~-KMSKS~G-N~i~p~ 1030 (2492)
-+|+...|.||.. |-.+..-++-.-+..|+ .++++.++.+. +|. |||||.+ |.|+..
T Consensus 183 ~ad~vpvG~DQ~~---~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 183 KADICQLGLDQRK---VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TCSEECCBGGGHH---HHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred CCCEEeccccHHH---HHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 4789999999984 33333322222222232 46778888887 884 9999998 678754
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=82.29 E-value=0.72 Score=62.05 Aligned_cols=57 Identities=28% Similarity=0.300 Sum_probs=37.2
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHh-cCCcccc-EEEEeeeEEcC-CC-ceeeeccC-CccCcc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIIL-NKSAPYK-ALLTHGFVVDS-KG-KKMSKSKG-NIIKPQ 2180 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l-~~~~pfk-~v~~hG~vld~-~G-~KMSKS~G-Nvi~p~ 2180 (2492)
|-+|+...|.||.. |-.+..-++- ++.. ++ .++.+.++.+. +| +|||||.+ |.|+..
T Consensus 182 ~~ad~vpvG~DQ~~---~l~l~Rdla~r~n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 182 LKADICQLGLDQRK---VNMLAREYCDLIGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TTCSEECCBGGGHH---HHHHHHHHHHHTTCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred hCCCEEeccccHHH---HHHHHHHHHHHhCCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 34789999999984 3333332222 2222 22 46678888887 88 49999998 677754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2492 | ||||
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 3e-51 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 3e-51 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 1e-39 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 1e-30 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 5e-50 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 5e-50 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 9e-37 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 2e-28 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 6e-43 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 1e-37 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 8e-12 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 8e-12 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 5e-09 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 5e-09 | |
| d1ffya1 | 273 | a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (Il | 7e-43 | |
| d1ffya1 | 273 | a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (Il | 7e-43 | |
| d1nxza2 | 174 | c.116.1.5 (A:74-247) Hypothetical protein HI0303 { | 2e-40 | |
| d1nxza2 | 174 | c.116.1.5 (A:74-247) Hypothetical protein HI0303 { | 2e-35 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-38 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-36 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-36 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 5e-33 | |
| d1vhka2 | 180 | c.116.1.5 (A:74-253) Hypothetical protein YqeU {Ba | 4e-36 | |
| d1vhka2 | 180 | c.116.1.5 (A:74-253) Hypothetical protein YqeU {Ba | 6e-32 | |
| d1v6za2 | 162 | c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 | 1e-35 | |
| d1v6za2 | 162 | c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 | 5e-30 | |
| d1wwra1 | 151 | c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { | 9e-32 | |
| d1wwra1 | 151 | c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { | 2e-16 | |
| d2g84a1 | 189 | c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr | 3e-29 | |
| d2g84a1 | 189 | c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr | 5e-10 | |
| d2a8na1 | 130 | c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de | 2e-27 | |
| d2a8na1 | 130 | c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de | 1e-11 | |
| d1ffya2 | 194 | b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il | 6e-27 | |
| d1ffya2 | 194 | b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il | 6e-27 | |
| d1z3aa1 | 156 | c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA | 9e-27 | |
| d1z3aa1 | 156 | c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA | 5e-15 | |
| d1wkqa_ | 158 | c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub | 2e-26 | |
| d1wkqa_ | 158 | c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub | 3e-14 | |
| d2b3ja1 | 151 | c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { | 1e-25 | |
| d2b3ja1 | 151 | c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { | 1e-13 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 2e-24 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 2e-24 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 3e-08 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 3e-08 | |
| d1p6oa_ | 156 | c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S | 6e-24 | |
| d1p6oa_ | 156 | c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S | 8e-10 | |
| d1udza_ | 179 | b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T | 4e-22 | |
| d1udza_ | 179 | b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T | 4e-22 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 9e-18 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 9e-18 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 3e-16 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 3e-16 | |
| d2b3za2 | 145 | c.97.1.2 (A:1-145) Riboflavin biosynthesis protein | 1e-17 | |
| d2b3za2 | 145 | c.97.1.2 (A:1-145) Riboflavin biosynthesis protein | 4e-12 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 1e-16 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 1e-16 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 2e-14 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 2e-14 | |
| d1h3na2 | 192 | b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS | 3e-15 | |
| d1h3na2 | 192 | b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS | 3e-15 | |
| d2hxva2 | 147 | c.97.1.2 (A:1-147) Riboflavin biosynthesis protein | 2e-12 | |
| d2hxva2 | 147 | c.97.1.2 (A:1-147) Riboflavin biosynthesis protein | 6e-05 | |
| d1nxza1 | 72 | b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Ha | 4e-12 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 1e-10 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 1e-10 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 7e-05 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 7e-05 | |
| d1vq2a_ | 193 | c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop | 4e-10 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 1e-08 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 4e-08 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 1e-06 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 1e-06 | |
| d1bf6a_ | 291 | c.1.9.3 (A:) Phosphotriesterase homology protein { | 1e-08 | |
| d1vhka1 | 72 | b.122.1.2 (A:2-73) Hypothetical protein YqeU {Baci | 7e-08 | |
| d1wkaa1 | 143 | b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) | 2e-07 | |
| d1wkaa1 | 143 | b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) | 2e-07 | |
| d1j6oa_ | 260 | c.1.9.12 (A:) Hypothetical protein TM0667 {Thermot | 5e-07 | |
| d1yixa1 | 265 | c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH | 2e-06 | |
| d1ivsa2 | 218 | a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) | 6e-05 | |
| d1ivsa2 | 218 | a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) | 6e-05 | |
| d1zzma1 | 259 | c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV | 2e-04 |
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 186 bits (473), Expect = 3e-51
Identities = 111/279 (39%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 795 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 854
+ S++ E+ H WR K P+I+R T QWF ++ K+ ++ AI
Sbjct: 185 WSPSSESSLAEAEIEY--PHDWRTKKPVIFRATPQWFASISKVRQDILD--------AIE 234
Query: 855 KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914
F +WGK R+ +M+ +R +W ISRQR WGVP+ F + + K E + +A
Sbjct: 235 NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK--ETVNHVADL 292
Query: 915 IELNGIEIWQNLDIKEF-------LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 967
+G IW + K+ G + K D +DVWFDSG +H+ V+ + +
Sbjct: 293 FAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE--TRPE 350
Query: 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027
L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+HGFV+D +GKKMSKS GN+I
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 1028 KPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066
P ++ GA+I RLWV+STDY D+ IS+EIL + +
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 186 bits (473), Expect = 3e-51
Identities = 111/279 (39%), Positives = 161/279 (57%), Gaps = 21/279 (7%)
Query: 1945 YLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN 2004
+ S++ E+ H WR K P+I+R T QWF ++ K+ ++ AI
Sbjct: 185 WSPSSESSLAEAEIEY--PHDWRTKKPVIFRATPQWFASISKVRQDILD--------AIE 234
Query: 2005 KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 2064
F +WGK R+ +M+ +R +W ISRQR WGVP+ F + + K E + +A
Sbjct: 235 NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK--ETVNHVADL 292
Query: 2065 IELNGIEIWQNLDIKEF-------LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 2117
+G IW + K+ G + K D +DVWFDSG +H+ V+ + +
Sbjct: 293 FAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE--TRPE 350
Query: 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 2177
L FPAD+YLEGSDQ+RGWF+SS+ TS+ +PYK LL+HGFV+D +GKKMSKS GN+I
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 2178 KPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 2216
P ++ GA+I RLWV+STDY D+ IS+EIL + +
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 152 bits (385), Expect = 1e-39
Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDII 1629
G L +EP +KW + YH+ + + FILHDGPPYANG++H+GHA+NKILKD I
Sbjct: 18 GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFI 77
Query: 1630 VKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--NLSPIEIQNKARALAYEKIEQQKM 1687
V++ M GF A YVPG+D HG+PIE + K +S E + K + A E+IE QK
Sbjct: 78 VRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKK 137
Query: 1688 DFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 1747
DF RLG+ G++++ Y T+ EA ++R FG + KG +Y G KPV W +S+LAEAE
Sbjct: 138 DFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE 197
Query: 1748 IEYKKKYDF 1756
IEY +
Sbjct: 198 IEYPHDWRT 206
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 125 bits (315), Expect = 1e-30
Identities = 78/167 (46%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
++ + FILHDGPPYANG++H+GHA+NKILKD IV++ M GF A YVPG+D HG+
Sbjct: 40 ALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99
Query: 502 PIEIQIEKLYGK--NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLN 559
PIE + K +S E + K + A E+IE QK DF RLG+ G++++ Y T+
Sbjct: 100 PIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEY 159
Query: 560 EANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606
EA ++R FG + KG +Y G KPV W +S+LAEAEIEY +
Sbjct: 160 EAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRT 206
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 183 bits (464), Expect = 5e-50
Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 14/280 (5%)
Query: 793 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 852
Y + T + Y HCWR TP++Y T WFI ++ +
Sbjct: 178 VPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQ------ 231
Query: 853 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSG--KLHPKTLELIEL 910
P + R + N DW +SR R+WG P+ ++ + G + EL
Sbjct: 232 -EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKAR 290
Query: 911 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 969
K + +D E ++ +DVW+DSG + + + +
Sbjct: 291 ATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF 350
Query: 970 ---FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 1026
FPAD EG DQ RGWF+S ++L S +K ++ HG ++D KG+KMSKSKGN+
Sbjct: 351 RESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV 410
Query: 1027 IKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 1065
+ P + FGA+ LR ++ D ++ V
Sbjct: 411 VDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV 450
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 183 bits (464), Expect = 5e-50
Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 14/280 (5%)
Query: 1943 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 2002
Y + T + Y HCWR TP++Y T WFI ++ +
Sbjct: 178 VPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQ------ 231
Query: 2003 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSG--KLHPKTLELIEL 2060
P + R + N DW +SR R+WG P+ ++ + G + EL
Sbjct: 232 -EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKAR 290
Query: 2061 IAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI- 2119
K + +D E ++ +DVW+DSG + + + +
Sbjct: 291 ATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF 350
Query: 2120 ---FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNI 2176
FPAD EG DQ RGWF+S ++L S +K ++ HG ++D KG+KMSKSKGN+
Sbjct: 351 RESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV 410
Query: 2177 IKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVV 2215
+ P + FGA+ LR ++ D ++ V
Sbjct: 411 VDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV 450
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 143 bits (362), Expect = 9e-37
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 1572 LSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVK 1631
K E + W+ +KI+ + + P++ +++GPP ANG H+GHA + KD+ +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPR 69
Query: 1632 FYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQ 1684
+ M G+ A G+D HG+P+E+++EK G R + ++
Sbjct: 70 YKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKE 129
Query: 1685 QKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 1739
+ R+ + +++Y T++ + + +F +G +Y K V +C C
Sbjct: 130 WEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 118 bits (297), Expect = 2e-28
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 442 EIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGM 501
++ P++ +++GPP ANG H+GHA + KD+ ++ M G+ A G+D HG+
Sbjct: 30 SVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89
Query: 502 PIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKT 554
P+E+++EK G R + ++ + R+ + +++Y T
Sbjct: 90 PVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYAT 149
Query: 555 MDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589
++ + + +F +G +Y K V +C C
Sbjct: 150 LEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 163 bits (413), Expect = 6e-43
Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 11/214 (5%)
Query: 1576 EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNM 1635
E W + W+EK R K + PY +GD+H+GH N + D++ +F M
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPG-GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 1636 DGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGIL 1695
G++ + G+D G+P E K + P + Y I Q K +GIL
Sbjct: 69 QGYEVLHPMGWDAFGLPAENAALKF---GVHPKDWT-------YANIRQAKESLRLMGIL 118
Query: 1696 GEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755
+WD T + F +++KG Y VNWC C++ LA ++ + +
Sbjct: 119 YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWR 178
Query: 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIW 1789
+ I + W
Sbjct: 179 HEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW 212
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 147 bits (372), Expect = 1e-37
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 10/203 (4%)
Query: 437 NGVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 496
G R K + PY +GD+H+GH N + D++ +F M G++ + G+
Sbjct: 20 KGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGW 79
Query: 497 DCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMD 556
D G+P E K + P + Y I Q K +GIL +WD T +
Sbjct: 80 DAFGLPAENAALKF---GVHPKDWT-------YANIRQAKESLRLMGILYDWDREVTTCE 129
Query: 557 FLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSE 616
F +++KG Y VNWC C++ LA ++ + +
Sbjct: 130 PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKREL 189
Query: 617 PEKIKSIFNLKNLPSGKGYIVIW 639
+ I + W
Sbjct: 190 EQWYLRITAYAERLLKDLEGLNW 212
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 68.1 bits (165), Expect = 8e-12
Identities = 35/260 (13%), Positives = 72/260 (27%), Gaps = 25/260 (9%)
Query: 803 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN---EKKSLRESAITAINKIKFF 859
+ + S W P+++ ++ + K + + + ++
Sbjct: 225 GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 284
Query: 860 PSWGKDRLKSM------------ILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 907
P + + W R F +K+ P
Sbjct: 285 PEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMP----- 339
Query: 908 IELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 967
++ +E + + + +FL D K + F G+ G + +
Sbjct: 340 VDQYIGGVEHAVLHLLYSRFFTKFLHDL--GMVKVEEPFQGLFTQGMVLAWTDFGPVEVE 397
Query: 968 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 1027
E + S+L + A + G + K MSKSKGN +
Sbjct: 398 --GSVVRLPEPTRIRLEIPESALSLEDVRKMGAELR-PHEDGTLHLWKPAVMSKSKGNGV 454
Query: 1028 KPQKLCNLFGAEILRLWVAS 1047
GA+I R+ +
Sbjct: 455 MVGPFVKEQGADIARITILF 474
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 68.1 bits (165), Expect = 8e-12
Identities = 35/260 (13%), Positives = 72/260 (27%), Gaps = 25/260 (9%)
Query: 1953 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKN---EKKSLRESAITAINKIKFF 2009
+ + S W P+++ ++ + K + + + ++
Sbjct: 225 GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 284
Query: 2010 PSWGKDRLKSM------------ILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLEL 2057
P + + W R F +K+ P
Sbjct: 285 PEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMP----- 339
Query: 2058 IELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 2117
++ +E + + + +FL D K + F G+ G + +
Sbjct: 340 VDQYIGGVEHAVLHLLYSRFFTKFLHDL--GMVKVEEPFQGLFTQGMVLAWTDFGPVEVE 397
Query: 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNII 2177
E + S+L + A + G + K MSKSKGN +
Sbjct: 398 --GSVVRLPEPTRIRLEIPESALSLEDVRKMGAELR-PHEDGTLHLWKPAVMSKSKGNGV 454
Query: 2178 KPQKLCNLFGAEILRLWVAS 2197
GA+I R+ +
Sbjct: 455 MVGPFVKEQGADIARITILF 474
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 58.8 bits (141), Expect = 5e-09
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 30/245 (12%)
Query: 806 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD 865
TP+ R QW++ + + K + +P K
Sbjct: 168 NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLK---------DLEGLNWPEKVKA 218
Query: 866 RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 925
++ I DW ISRQR+WG PI + G + EL L+ ++ I
Sbjct: 219 MQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 278
Query: 926 LDI-------KEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIF 970
+ + K+ DT+D +FDS + + +
Sbjct: 279 SPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM 338
Query: 971 PADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKG 1024
P D Y+ G + + +F L ++ P++ L T G V+ + +G
Sbjct: 339 PVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEG 398
Query: 1025 NIIKP 1029
++++
Sbjct: 399 SVVRL 403
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 58.8 bits (141), Expect = 5e-09
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 30/245 (12%)
Query: 1956 EMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKD 2015
TP+ R QW++ + + K + +P K
Sbjct: 168 NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLK---------DLEGLNWPEKVKA 218
Query: 2016 RLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQN 2075
++ I DW ISRQR+WG PI + G + EL L+ ++ I
Sbjct: 219 MQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 278
Query: 2076 LDI-------KEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIF 2120
+ + K+ DT+D +FDS + + +
Sbjct: 279 SPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM 338
Query: 2121 PADLYLEGSDQ------HRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKG 2174
P D Y+ G + + +F L ++ P++ L T G V+ + +G
Sbjct: 339 PVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEG 398
Query: 2175 NIIKP 2179
++++
Sbjct: 399 SVVRL 403
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 273 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 156 bits (395), Expect = 7e-43
Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 13/276 (4%)
Query: 1068 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 1127
YR+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60
Query: 1128 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 1187
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+
Sbjct: 61 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120
Query: 1188 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 1247
EE WS + + L V + LL K+ +R V + LE R+
Sbjct: 121 EEVWS-------HTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARN 173
Query: 1248 TGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLF-----QIKNLSEECII 1301
+IG SL+A++ + N K + + L + S V + Q I+
Sbjct: 174 EKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 233
Query: 1302 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 1337
I+ + +KC RCW+Y D+G D+ LC RC +
Sbjct: 234 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 269
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 273 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 156 bits (395), Expect = 7e-43
Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 13/276 (4%)
Query: 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMI 2277
YR+IRNTLRF+L N +DFNP+ + I S+++E+D+Y + + +++Y +++ I
Sbjct: 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNI 60
Query: 2278 VSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTS 2337
++Q + + +L +FYLD KD LY +++SH RRS QT ++ I + +L++PIL T+
Sbjct: 61 YQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 120
Query: 2338 EEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQKLEKIRS 2397
EE WS + + L V + LL K+ +R V + LE R+
Sbjct: 121 EEVWS-------HTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARN 173
Query: 2398 TGIIGSSLQAEIILKIN-KLDFEILNEFGEELKFFLLTSSVSLF-----QIKNLSEECII 2451
+IG SL+A++ + N K + + L + S V + Q I+
Sbjct: 174 EKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 233
Query: 2452 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL 2487
I+ + +KC RCW+Y D+G D+ LC RC +
Sbjct: 234 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVV 269
|
| >d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein HI0303 species: Haemophilus influenzae [TaxId: 727]
Score = 146 bits (368), Expect = 2e-40
Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNI 333
E I L Q + + + I+KSVELGV +I P+ + RC ++L+ ER+ KK +W+ I
Sbjct: 2 ESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKI 61
Query: 334 IISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELL 393
I+A EQ GRNI+P + P + +W ++ L PR + V LL
Sbjct: 62 AIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSI-KTLPTIPAGGVRLL 120
Query: 394 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWGEI 443
IG EGG + +E + G + LGKR+LRTETASL A++ L +G++
Sbjct: 121 IGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFGDL 170
|
| >d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein HI0303 species: Haemophilus influenzae [TaxId: 727]
Score = 131 bits (330), Expect = 2e-35
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
Q + + + I+KSVELGV +I P+ + RC ++L+ ER+ KK +W+ I I+A EQ
Sbjct: 10 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQC 69
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GRNI+P + P + +W ++ L PR + V LLIG EGG +
Sbjct: 70 GRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSI-KTLPTIPAGGVRLLIGSEGGLS 128
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
+E + G + LGKR+LRTETASL A++ L
Sbjct: 129 AQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICF 167
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 148 bits (375), Expect = 1e-38
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 1571 ELSKR------EPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKI 1624
+L K EP W +KW + + +P F++ PP G +H+GHA++
Sbjct: 2 DLPKAYDPKSVEPKWAEKWAKNPFVANPKS---GKPPFVIFMPPPNVTGSLHMGHALDNS 58
Query: 1625 LKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYG------KNLSPIEIQNKARALA 1678
L+D ++++ M GF+A ++PG D G+ ++ +E+L +L + +
Sbjct: 59 LQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118
Query: 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFD 1738
E RLG +W TMD AF + +G Y + VNWC
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 1739 CKSALAEAEIEYKKKYDFSIY 1759
C++ L++ E+E + I
Sbjct: 179 CETTLSDLEVETCSRCGTPIE 199
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 143 bits (360), Expect = 1e-36
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 30/265 (11%)
Query: 810 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 869
C R TPI Y QW++ M + + K LR I F P K
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRR------GDIAFVPERWKKVNMD 239
Query: 870 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 929
+ N DW ISRQ WG I + + ++ D
Sbjct: 240 WLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV----------------PRPERYLEDPT 283
Query: 930 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI---FPADLYLEGSDQHRGWF 986
+ K+ D D WF S + + + + + + +P D+ + G D W
Sbjct: 284 SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWV 343
Query: 987 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046
++ P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR +
Sbjct: 344 SRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALI 403
Query: 1047 S-TDYSKDLSISNEILNRVVETYRR 1070
+D+ + +E R
Sbjct: 404 YLATGGQDIRLDLRW----LEMARN 424
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 143 bits (360), Expect = 1e-36
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 30/265 (11%)
Query: 1960 HSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKS 2019
C R TPI Y QW++ M + + K LR I F P K
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRR------GDIAFVPERWKKVNMD 239
Query: 2020 MILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK 2079
+ N DW ISRQ WG I + + ++ D
Sbjct: 240 WLENVKDWNISRQLWWGHQIPAWYCEDCQAVNV----------------PRPERYLEDPT 283
Query: 2080 EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLI---FPADLYLEGSDQHRGWF 2136
+ K+ D D WF S + + + + + + +P D+ + G D W
Sbjct: 284 SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWV 343
Query: 2137 HSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196
++ P+K +L HG V+D KG+KMSKSKGN+I P ++ +GA+ LR +
Sbjct: 344 SRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALI 403
Query: 2197 S-TDYSKDLSISNEILNRVVETYRR 2220
+D+ + +E R
Sbjct: 404 YLATGGQDIRLDLRW----LEMARN 424
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 132 bits (332), Expect = 5e-33
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Query: 448 NRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQI 507
+P F++ PP G +H+GHA++ L+D ++++ M GF+A ++PG D G+ ++ +
Sbjct: 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVV 91
Query: 508 EKLYG------KNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEA 561
E+L +L + + E RLG +W TMD
Sbjct: 92 ERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSR 151
Query: 562 NELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609
AF + +G Y + VNWC C++ L++ E+E + I
Sbjct: 152 AVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIE 199
|
| >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Score = 133 bits (336), Expect = 4e-36
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNI 333
ELP + + LP+ K + II+K ELG P R +++L++++ KKR RW I
Sbjct: 3 ELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKI 62
Query: 334 IISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL-------SCWANNQS 386
A EQS RN +P + F L + +++ K + ++
Sbjct: 63 AKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPK 122
Query: 387 PQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILN 437
+ ++ GPEGG TE E E + LG RILRTETA L AL+ ++
Sbjct: 123 GSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAIS 173
|
| >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Score = 122 bits (306), Expect = 6e-32
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
LP+ K + II+K ELG P R +++L++++ KKR RW I A EQS
Sbjct: 11 ASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQS 70
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKL-------SCWANNQSPQEVELLI 1526
RN +P + F L + +++ K + ++ + ++
Sbjct: 71 YRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVF 130
Query: 1527 GPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGEL 1572
GPEGG TE E E + LG RILRTETA L AL+ ++ +
Sbjct: 131 GPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAISYQT 176
|
| >d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein TTHA0657 (TT1575) species: Thermus thermophilus [TaxId: 274]
Score = 132 bits (332), Expect = 1e-35
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNI 333
E+ + L AL + K ++ + ELG IQP++T + + E K R + +
Sbjct: 2 EVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPK---EMGEGKLRRLRAV 58
Query: 334 IISATEQSGRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELL 393
+ A +QSGR ++P + P I + + +++ + L
Sbjct: 59 ALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLA-----LA 113
Query: 394 IGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAILNGVWG 441
+GPEGGF E+E L G +SLG+RILR ETA+L LA+ G
Sbjct: 114 VGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEG 161
|
| >d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein TTHA0657 (TT1575) species: Thermus thermophilus [TaxId: 274]
Score = 115 bits (290), Expect = 5e-30
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 1414 IQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQS 1473
AL + K ++ + ELG IQP++T + + E K R + + + A +QS
Sbjct: 10 YVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPK---EMGEGKLRRLRAVALEAAKQS 66
Query: 1474 GRNILPVLAPNIYFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFT 1533
GR ++P + P I + + +++ + L +GPEGGF
Sbjct: 67 GRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLA-----LAVGPEGGFA 121
Query: 1534 EKEENLAYECGVIILSLGKRILRTETASLVALAILN 1569
E+E L G +SLG+RILR ETA+L LA+
Sbjct: 122 EEEVALLEARGFTPVSLGRRILRAETAALALLALCT 157
|
| >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Aquifex aeolicus [TaxId: 63363]
Score = 120 bits (301), Expect = 9e-32
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVPVGA++VK +IS +N DPTAHAE++A++ A + LN +
Sbjct: 14 AKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYL-EG 72
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
++YVTLEPC MC+ A++ R+ ++I+ K G S+ N+ E LNH +
Sbjct: 73 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL 132
Query: 177 QKQCEKLLKSFFIKRRN 193
++ +LL FF K RN
Sbjct: 133 -EEASELLSEFFKKLRN 148
|
| >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Aquifex aeolicus [TaxId: 63363]
Score = 76.0 bits (186), Expect = 2e-16
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 1299 CIIIKPSIYKKCNRCWHYQ----ADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHVRLG 1354
S+ + + H + + R + L EPC MC+ A++ R+
Sbjct: 36 ISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIE 95
Query: 1355 EIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
++I+ K G S+ N+ E LNH + ++ +LL FF K RN
Sbjct: 96 KVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL-EEASELLSEFFKKLRN 148
|
| >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Putative deaminase NE0047 species: Nitrosomonas europaea [TaxId: 915]
Score = 114 bits (286), Expect = 3e-29
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 57 AKLALIAGEVPVGAVLVKNN--LVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
+ + A P A + + + L+I+ G N+ + AHAEI+AL +A L+ + S
Sbjct: 37 VRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLS 96
Query: 115 K----NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGS----IINLFQEKKLN 166
++ + EPC MC GA+I + ++ S A G +
Sbjct: 97 ADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEA 156
Query: 167 HHTILTGGVMQKQCEKLLKSFF 188
+T G+++ LL+ +
Sbjct: 157 RGITVTTGLLRDAACALLREYN 178
|
| >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Putative deaminase NE0047 species: Nitrosomonas europaea [TaxId: 915]
Score = 59.0 bits (142), Expect = 5e-10
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 1304 PSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPS 1362
+ + + QA + D D C EPC MC GA+I + ++ S
Sbjct: 74 SAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARS 133
Query: 1363 FKTGACGS----IINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403
A G + +T G+++ LL+ +
Sbjct: 134 DDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYN 178
|
| >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytidine and deoxycytidylate deaminase CodA species: Agrobacterium tumefaciens [TaxId: 358]
Score = 107 bits (267), Expect = 2e-27
Identities = 48/118 (40%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
A+ A EVP+GAVLV + VI+ N+ ND TAHAEI +RMA + L R
Sbjct: 14 ARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERL-PG 72
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 174
+YVTLEPC MCA AI R+ + YG K GA S + F + +H + G
Sbjct: 73 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSG 130
|
| >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytidine and deoxycytidylate deaminase CodA species: Agrobacterium tumefaciens [TaxId: 358]
Score = 62.2 bits (150), Expect = 1e-11
Identities = 20/83 (24%), Positives = 27/83 (32%)
Query: 1307 YKKCNRCWHYQADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTG 1366
+ E L EPC MCA AI R+ + YG K G
Sbjct: 48 DVTAHAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGG 107
Query: 1367 ACGSIINLFQEKKLNHHTILTGG 1389
A S + F + +H + G
Sbjct: 108 AVESGVRFFSQPTCHHAPDVYSG 130
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 108 bits (269), Expect = 6e-27
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 603 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYAL 662
K SIYV F +K + K + +IWT+TPWTIP+N A+ VHPE Y
Sbjct: 3 KRSASIYVAF------NVK---DDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQ 53
Query: 663 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS 722
++ + ++ + V L + G +L + HP +R S
Sbjct: 54 YNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHP------FLDRES 107
Query: 723 PIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGG 782
+ GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F F G
Sbjct: 108 LVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEG 164
Query: 783 MSIWKASKLICSYLKKSKTLFNIEMFEHSY 812
M KA+K + L + L ++ HSY
Sbjct: 165 MFYDKANKAVTDLLTEKGALLKLDFITHSY 194
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 108 bits (269), Expect = 6e-27
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 1753 KYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYAL 1812
K SIYV F +K + K + +IWT+TPWTIP+N A+ VHPE Y
Sbjct: 3 KRSASIYVAF------NVK---DDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQ 53
Query: 1813 VHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLS 1872
++ + ++ + V L + G +L + HP +R S
Sbjct: 54 YNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHP------FLDRES 107
Query: 1873 PIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGG 1932
+ GD++T D+GTG VH+AP +G +D+++ ++ + +I+P+ D G F F G
Sbjct: 108 LVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL---PVISPIDDKGVFTEEGGQFEG 164
Query: 1933 MSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962
M KA+K + L + L ++ HSY
Sbjct: 165 MFYDKANKAVTDLLTEKGALLKLDFITHSY 194
|
| >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Escherichia coli [TaxId: 562]
Score = 106 bits (264), Expect = 9e-27
Identities = 64/137 (46%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A EVPVGAVLV NN VI G+N+ I R+DPTAHAEI+A L+ +
Sbjct: 18 AKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMA-LRQGGLVMQNYRLID 76
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAGA+IH R+G +++G KTGA GS++++ +NH +T G++
Sbjct: 77 ATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGIL 136
Query: 177 QKQCEKLLKSFFIKRRN 193
+C LL FF RR
Sbjct: 137 ADECAALLSDFFRMRRQ 153
|
| >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Escherichia coli [TaxId: 562]
Score = 72.6 bits (177), Expect = 5e-15
Identities = 32/95 (33%), Positives = 47/95 (49%)
Query: 1314 WHYQADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 1373
G L + EPC MCAGA+IH R+G +++G KTGA GS+++
Sbjct: 59 IMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMD 118
Query: 1374 LFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
+ +NH +T G++ +C LL FF RR
Sbjct: 119 VLHHPGMNHRVEITEGILADECAALLSDFFRMRRQ 153
|
| >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Guanine deaminase GuaD species: Bacillus subtilis [TaxId: 1423]
Score = 105 bits (262), Expect = 2e-26
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 57 AKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
A + AG P GAV+VK+ +I+ G N T NDPTAHAE+ A+R A K+L Y+
Sbjct: 16 ACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQL-D 74
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGV 175
+ +Y + EPC MC GAI R + Y G + ++ T
Sbjct: 75 DCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF 134
Query: 176 MQKQCEKLLKSFFIKRR 192
Q + L F R
Sbjct: 135 YQVTLTEHLSPFQAWRN 151
|
| >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Guanine deaminase GuaD species: Bacillus subtilis [TaxId: 1423]
Score = 70.7 bits (172), Expect = 3e-14
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 6/120 (5%)
Query: 1299 CIIIKPSIYKKCNRCWHYQADVGER----DDYPDLCNRCFNNLFEPCAMCAGAIIHVRLG 1354
+ ++ + H + + L + EPC MC GAI R
Sbjct: 39 IAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPK 98
Query: 1355 EIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFVKNKI 1414
+ Y G + ++ T Q + L F R NK
Sbjct: 99 AVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAWRNF--ANKK 156
|
| >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (255), Expect = 1e-25
Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Query: 57 AKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKN 116
AK A GEVP+GA++ K++ VI+ +N + T PTAHAE IA+ A+K+L ++R +
Sbjct: 15 AKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRL-EG 73
Query: 117 YKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVM 176
+YVTLEPC MCAG I+ R+ ++YG K G GS++NL Q+ NH I+ GV+
Sbjct: 74 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVL 133
Query: 177 QKQCEKLLKSFFIKRRN 193
++ C LL +FF R
Sbjct: 134 KEACSTLLTTFFKNLRA 150
|
| >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Staphylococcus aureus [TaxId: 1280]
Score = 68.1 bits (165), Expect = 1e-13
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 13/123 (10%)
Query: 1299 CIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNL-------------FEPCAMCA 1345
II K R L EPC MCA
Sbjct: 28 AIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCA 87
Query: 1346 GAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 1405
G I+ R+ ++YG K G GS++NL Q+ NH I+ GV+++ C LL +FF
Sbjct: 88 GTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKN 147
Query: 1406 RRN 1408
R
Sbjct: 148 LRA 150
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 2e-24
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
K ++ PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ- 61
Query: 511 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 570
++P + + E ++ + DF I +DN + T N + +
Sbjct: 62 --LGITPEQ-------MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRL 110
Query: 571 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 606
+ G++ + + + L + +
Sbjct: 111 KENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVM 146
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 2e-24
Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
K ++ PYANG IH+GH + I D+ V++ M G + ++ D HG PI ++ ++
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ- 61
Query: 1661 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720
++P + + E ++ + DF I +DN + T N + +
Sbjct: 62 --LGITPEQ-------MIGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRL 110
Query: 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDF 1756
+ G++ + + + L + +
Sbjct: 111 KENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVM 146
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 55.7 bits (133), Expect = 3e-08
Identities = 40/282 (14%), Positives = 71/282 (25%), Gaps = 50/282 (17%)
Query: 783 MSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 842
+ + + + L++ E + R + +F ++
Sbjct: 105 LIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPS------ 158
Query: 843 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHW-GVPIAFFIHKKSGKLH 901
E + W ISR + G I K
Sbjct: 159 --FSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWL 216
Query: 902 PKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR 961
+ + ++NL K Y K + T +++ G
Sbjct: 217 ------------DAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHS 264
Query: 962 GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSK 1021
L + F HG+V G KMSK
Sbjct: 265 LFWPAMLEG------SNFRKPSNLFV--------------------HGYVTV-NGAKMSK 297
Query: 1022 SKGNIIKPQKLCNLFGAEILRLWVAS--TDYSKDLSISNEIL 1061
S+G IK N F A+ LR + + + D+ ++ E
Sbjct: 298 SRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 339
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 55.7 bits (133), Expect = 3e-08
Identities = 40/282 (14%), Positives = 71/282 (25%), Gaps = 50/282 (17%)
Query: 1933 MSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEK 1992
+ + + + L++ E + R + +F ++
Sbjct: 105 LIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPS------ 158
Query: 1993 KSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHW-GVPIAFFIHKKSGKLH 2051
E + W ISR + G I K
Sbjct: 159 --FSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWL 216
Query: 2052 PKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIR 2111
+ + ++NL K Y K + T +++ G
Sbjct: 217 ------------DAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHS 264
Query: 2112 GSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSK 2171
L + F HG+V G KMSK
Sbjct: 265 LFWPAMLEG------SNFRKPSNLFV--------------------HGYVTV-NGAKMSK 297
Query: 2172 SKGNIIKPQKLCNLFGAEILRLWVAS--TDYSKDLSISNEIL 2211
S+G IK N F A+ LR + + + D+ ++ E
Sbjct: 298 SRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 339
|
| >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytosine deaminase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.0 bits (243), Expect = 6e-24
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 12/154 (7%)
Query: 41 MLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEI 98
M + D + A L G VP+G L+ K+ V+ G+N + + T H EI
Sbjct: 4 MASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEI 63
Query: 99 IALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIIN 158
L + + K+ +Y TL PC MC GAII + + G
Sbjct: 64 STLENCGR--LEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKG----- 116
Query: 159 LFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 192
EK L V ++C+K++K F +R
Sbjct: 117 ---EKYLQTRGHEVVVVDDERCKKIMKQFIDERP 147
|
| >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytosine deaminase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (138), Expect = 8e-10
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 1306 IYKKCNRCWHYQADVGERD----------DYPDLCNRCFNNLFEPCAMCAGAIIHVRLGE 1355
+ + N + + + + + PC MC GAII +
Sbjct: 44 LGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPR 103
Query: 1356 IIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 1407
+ G EK L V ++C+K++K F +R
Sbjct: 104 CVVGENVNFKSKG--------EKYLQTRGHEVVVVDDERCKKIMKQFIDERP 147
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 93.9 bits (232), Expect = 4e-22
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 666
S+YV F EP+K+ K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 2 SVYVRFPLKEPKKLGLE---------KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 52
Query: 667 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 726
++ +L + ++ G L + + P + + L
Sbjct: 53 DEALILEEGLGRKLLGEGTP------VLKTFPGKALEGLPYTPPYPQ---ALEKGYFVVL 103
Query: 727 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 786
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 104 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 158
Query: 787 KASKLICSYLKKSKTLFNIE 806
+A++ I L+ LF E
Sbjct: 159 EANRAILRDLRGRGFLFKEE 178
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 93.9 bits (232), Expect = 4e-22
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIK 1816
S+YV F EP+K+ K ++IWT+TPWT+P N A VHPE+ YA +
Sbjct: 2 SVYVRFPLKEPKKLGLE---------KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG 52
Query: 1817 NDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYL 1876
++ +L + ++ G L + + P + + L
Sbjct: 53 DEALILEEGLGRKLLGEGTP------VLKTFPGKALEGLPYTPPYPQ---ALEKGYFVVL 103
Query: 1877 GDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIW 1936
DY++ + GTGIVH APA+G ED + + ++ V ++G + F G+
Sbjct: 104 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLKTVDEEGKL--LVEPFKGLYFR 158
Query: 1937 KASKLICSYLKKSKTLFNIE 1956
+A++ I L+ LF E
Sbjct: 159 EANRAILRDLRGRGFLFKEE 178
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 85.5 bits (210), Expect = 9e-18
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 451 KFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 509
++++ PYANG IH GH + DI V++ + G D ++ G D HG PI + K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 510 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 569
+ SP EI ++ ++ K+ +D +T ++ F
Sbjct: 63 ---EGRSPREIVDEFHEQIKITFQRAKIS---------FDFFGRTELPIHYKLSQEFFLK 110
Query: 570 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 614
++ G++ + +C K L + + F +
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYI 155
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 85.5 bits (210), Expect = 9e-18
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNK-ILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEK 1659
++++ PYANG IH GH + DI V++ + G D ++ G D HG PI + K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 1660 LYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGI 1719
+ SP EI ++ ++ K+ +D +T ++ F
Sbjct: 63 ---EGRSPREIVDEFHEQIKITFQRAKIS---------FDFFGRTELPIHYKLSQEFFLK 110
Query: 1720 IFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSF 1764
++ G++ + +C K L + + F +
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYI 155
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 80.8 bits (198), Expect = 3e-16
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 33/274 (12%)
Query: 793 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 852
K +K + PI +R + ++I M E
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF--------AERLKRW 167
Query: 853 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 912
I K + P+ L + + I+R +WG+P+ GK+ E
Sbjct: 168 IEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFE------ 221
Query: 913 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA 972
I E + L++ + + H + +PA
Sbjct: 222 -------APIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPA 274
Query: 973 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 1032
+L +++ + + + ++ +GKK S S+ I +
Sbjct: 275 --FLMAYGKYKDEEVEAEWN--------LPYDIPANEYLTL-EGKKFSTSRNWAIWVHEF 323
Query: 1033 CNLFGAEILRLWVAST-DYSKDLSISNEILNRVV 1065
++F A+ LR ++ + ++D S +
Sbjct: 324 LDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRI 357
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 80.8 bits (198), Expect = 3e-16
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 33/274 (12%)
Query: 1943 CSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITA 2002
K +K + PI +R + ++I M E
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF--------AERLKRW 167
Query: 2003 INKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIA 2062
I K + P+ L + + I+R +WG+P+ GK+ E
Sbjct: 168 IEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFE------ 221
Query: 2063 KKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPA 2122
I E + L++ + + H + +PA
Sbjct: 222 -------APIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPA 274
Query: 2123 DLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKL 2182
+L +++ + + + ++ +GKK S S+ I +
Sbjct: 275 --FLMAYGKYKDEEVEAEWN--------LPYDIPANEYLTL-EGKKFSTSRNWAIWVHEF 323
Query: 2183 CNLFGAEILRLWVAST-DYSKDLSISNEILNRVV 2215
++F A+ LR ++ + ++D S +
Sbjct: 324 LDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRI 357
|
| >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Bacillus subtilis [TaxId: 1423]
Score = 79.5 bits (195), Expect = 1e-17
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 57 AKLALIAGEV--PVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS 114
AK E VGAV+VK+ ++ G + + AHAE+ A+ MA
Sbjct: 13 AKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYG----EAHAEVHAIHMAGAHAEGADIY 68
Query: 115 KNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 174
+ CA II+ + + G I++ +E + G
Sbjct: 69 VTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEV----REG 124
Query: 175 VMQKQCEKLLKSFFIKRRN 193
++ Q E+L + F R
Sbjct: 125 ILADQAERLNEKFLHFMRT 143
|
| >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Bacillus subtilis [TaxId: 1423]
Score = 64.1 bits (155), Expect = 4e-12
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 4/117 (3%)
Query: 1292 IKNLSEECIIIKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFEPCAMCAGAIIHV 1351
+K+ + + + + + CA II+
Sbjct: 31 VKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINS 90
Query: 1352 RLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
+ + G I++ +E + G++ Q E+L + F R
Sbjct: 91 GIKRVFVAMRDPNPLVAGRGISMMKEAGIEV----REGILADQAERLNEKFLHFMRT 143
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 82.0 bits (201), Expect = 1e-16
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 451 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 510
F + Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + +
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA- 62
Query: 511 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 570
P + K + LGI +D+ +T + ++ +
Sbjct: 63 --AGEDPKAFV-------DRVSGRFKRAWDLLGI--AYDDFIRTTEERHKKVVQLVLKKV 111
Query: 571 FKKGYVYHGLKPVNWCFDCKSALAE 595
++ G +Y+G +C C+ E
Sbjct: 112 YEAGDIYYGEYEGLYCVSCERFYTE 136
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 82.0 bits (201), Expect = 1e-16
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 1601 KFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL 1660
F + Y N + H+GHA ++ D + +++ +DG+ ++ G D HG + +
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA- 62
Query: 1661 YGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720
P + K + LGI +D+ +T + ++ +
Sbjct: 63 --AGEDPKAFV-------DRVSGRFKRAWDLLGI--AYDDFIRTTEERHKKVVQLVLKKV 111
Query: 1721 FKKGYVYHGLKPVNWCFDCKSALAE 1745
++ G +Y+G +C C+ E
Sbjct: 112 YEAGDIYYGEYEGLYCVSCERFYTE 136
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 75.1 bits (183), Expect = 2e-14
Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 5/269 (1%)
Query: 803 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSW 862
++ +Y R + Q + + E + +
Sbjct: 80 RAWDLLGIAYDDFIRTTEERHKKVV-QLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 863 GKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922
+ L + + + + ++ + +P + + + + I
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 923 WQNLD--IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFP-ADLYLEGS 979
K + N VWFD+ + + + + + +
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 980 DQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 1039
T + Y+ L GF++ G+KMSK+ GN++ P L +G +
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 1040 ILRLWVAS-TDYSKDLSISNEILNRVVET 1067
LR ++ Y +D +S E L E
Sbjct: 319 ALRYYLLREIPYGQDTPVSEEALRTRYEA 347
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 75.1 bits (183), Expect = 2e-14
Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 5/269 (1%)
Query: 1953 FNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSW 2012
++ +Y R + Q + + E + +
Sbjct: 80 RAWDLLGIAYDDFIRTTEERHKKVV-QLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 2013 GKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072
+ L + + + + ++ + +P + + + + I
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 2073 WQNLD--IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFP-ADLYLEGS 2129
K + N VWFD+ + + + + + +
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 2130 DQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAE 2189
T + Y+ L GF++ G+KMSK+ GN++ P L +G +
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 2190 ILRLWVAS-TDYSKDLSISNEILNRVVET 2217
LR ++ Y +D +S E L E
Sbjct: 319 ALRYYLLREIPYGQDTPVSEEALRTRYEA 347
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 74.2 bits (181), Expect = 3e-15
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 23/188 (12%)
Query: 624 FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683
F ++ + I ++T+ P T+ L + PE L + V++
Sbjct: 9 FPVEG---KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKR---EEVLAYVEAA 62
Query: 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAP 743
+K + G K +P PI+ DY+ GTG + + P
Sbjct: 63 KRKTEIERQAEGREKTGVFLGAYALNPA------TGERIPIWTADYVLFGYGTGAIMAVP 116
Query: 744 AYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-----------FGGMSIWKASKLI 792
A+ D+ +K + +I + F G + + +
Sbjct: 117 AHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKV 176
Query: 793 CSYLKKSK 800
++L++
Sbjct: 177 IAWLEEKG 184
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 74.2 bits (181), Expect = 3e-15
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 23/188 (12%)
Query: 1774 FNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 1833
F ++ + I ++T+ P T+ L + PE L + V++
Sbjct: 9 FPVEG---KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKR---EEVLAYVEAA 62
Query: 1834 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAP 1893
+K + G K +P PI+ DY+ GTG + + P
Sbjct: 63 KRKTEIERQAEGREKTGVFLGAYALNPA------TGERIPIWTADYVLFGYGTGAIMAVP 116
Query: 1894 AYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPL-----------FGGMSIWKASKLI 1942
A+ D+ +K + +I + F G + + +
Sbjct: 117 AHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKV 176
Query: 1943 CSYLKKSK 1950
++L++
Sbjct: 177 IAWLEEKG 184
|
| >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Thermotoga maritima [TaxId: 2336]
Score = 65.0 bits (157), Expect = 2e-12
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 6/138 (4%)
Query: 56 RAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSK 115
+ L + PVGAV+VK+ +I+ G++ A A + L
Sbjct: 14 KKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLI-V 72
Query: 116 NYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGV 175
+ C II + ++ GT + + NH + GV
Sbjct: 73 TLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEK-----FRNHGIEVIEGV 127
Query: 176 MQKQCEKLLKSFFIKRRN 193
++++ +KL + F
Sbjct: 128 LEEEVKKLCEFFITYVTK 145
|
| >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Thermotoga maritima [TaxId: 2336]
Score = 43.4 bits (101), Expect = 6e-05
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 1313 CWHYQADVGERDDYPDL-CNRCFNNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSI 1371
GE L + C II + ++ GT + +
Sbjct: 54 AIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGV 113
Query: 1372 INLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408
NH + GV++++ +KL + F
Sbjct: 114 EK-----FRNHGIEVIEGVLEEEVKKLCEFFITYVTK 145
|
| >d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Length = 72 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: YggJ N-terminal domain-like domain: Hypothetical protein HI0303 species: Haemophilus influenzae [TaxId: 727]
Score = 61.3 bits (149), Expect = 4e-12
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 206 RFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKKILI 263
R Y+PI YL ++ NH+ VLR+ + LF+G Y AK+I KK + +
Sbjct: 4 RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKV 63
Query: 264 QIIS 267
+I+
Sbjct: 64 EILG 67
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 63.0 bits (152), Expect = 1e-10
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 935 DAVNYKKSNDTLDVW-FDSGI---THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSL 990
D V +K S + W G + KQL D++ GSD + +
Sbjct: 180 DFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEI 239
Query: 991 LTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 1050
S + + G V +KMSKS GN + + + AE +R ++ S Y
Sbjct: 240 AQSTCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHY 298
Query: 1051 SKDLSISNEILN 1062
L+ S E L
Sbjct: 299 RSQLNYSEENLK 310
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 63.0 bits (152), Expect = 1e-10
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 2085 DAVNYKKSNDTLDVW-FDSGI---THQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSL 2140
D V +K S + W G + KQL D++ GSD + +
Sbjct: 180 DFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEI 239
Query: 2141 LTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDY 2200
S + + G V +KMSKS GN + + + AE +R ++ S Y
Sbjct: 240 AQSTCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHY 298
Query: 2201 SKDLSISNEILN 2212
L+ S E L
Sbjct: 299 RSQLNYSEENLK 310
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (105), Expect = 7e-05
Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 2/154 (1%)
Query: 459 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 518
HIGH + D++ ++ G+ +YV I + + ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 519 EIQNKARALAYEKIEQQKMDFMRL--GILGEWDNSYKTMDFLNEANELRAFGIIFKKGYV 576
+ ++ + + D + E + + A ++F
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149
Query: 577 YHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 610
D A A ++ K+ +
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVL 183
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (105), Expect = 7e-05
Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 2/154 (1%)
Query: 1609 PYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPI 1668
HIGH + D++ ++ G+ +YV I + + ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 1669 EIQNKARALAYEKIEQQKMDFMRL--GILGEWDNSYKTMDFLNEANELRAFGIIFKKGYV 1726
+ ++ + + D + E + + A ++F
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149
Query: 1727 YHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYV 1760
D A A ++ K+ +
Sbjct: 150 PTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVL 183
|
| >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Deoxycytidylate deaminase species: Bacteriophage T4 [TaxId: 10665]
Score = 59.5 bits (143), Expect = 4e-10
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 10/143 (6%)
Query: 46 DSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMAS 105
+ +L P A + E + L + + HAE+ A+ A+
Sbjct: 55 EQGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAA 114
Query: 106 KLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKL 165
+ ++ + +YVTL PC CA AI + +++Y K + L
Sbjct: 115 ENGSSI---EGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW-------DDIL 164
Query: 166 NHHTILTGGVMQKQCEKLLKSFF 188
+ I V +K KL
Sbjct: 165 RNAGIEVFNVPKKNLNKLNWENI 187
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 57.1 bits (136), Expect = 1e-08
Identities = 26/244 (10%), Positives = 76/244 (31%), Gaps = 12/244 (4%)
Query: 1587 KIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646
I +I + + K+++ G +G +H+G+ I+ G++ +++ +
Sbjct: 5 YIADKIIRERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMW 63
Query: 1647 DCHGMP------IEIQIEKLYGKNLSPIEIQN-KARALAYEKIEQQKMDFMRLGILGEWD 1699
D + + + + G +S + + A + + + + +LGI +
Sbjct: 64 DDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLL 123
Query: 1700 NSYKTMDFLNEANE----LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYD 1755
+ + + E I + Y + + E++++ +
Sbjct: 124 YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAE 183
Query: 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHI 1815
+ G + + + ++ SG + P D+ +
Sbjct: 184 IIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGS 243
Query: 1816 KNDP 1819
D
Sbjct: 244 SYDT 247
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.1 bits (131), Expect = 4e-08
Identities = 25/238 (10%), Positives = 74/238 (31%), Gaps = 12/238 (5%)
Query: 443 IKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMP 502
I+ + K+++ G +G +H+G+ I+ G++ +++ +D +
Sbjct: 11 IRERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRF 69
Query: 503 ------IEIQIEKLYGKNLSPIEIQN-KARALAYEKIEQQKMDFMRLGILGEWDNSYKTM 555
+ + + G +S + + A + + + + +LGI + + +
Sbjct: 70 RKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELY 129
Query: 556 DFLNEANE----LRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVG 611
+ E I + Y + + E++++ + + G
Sbjct: 130 KRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDG 189
Query: 612 FSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669
+ + + ++ SG + P D+ + D
Sbjct: 190 GWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDT 247
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.5 bits (119), Expect = 1e-06
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 7/172 (4%)
Query: 884 HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSN 943
+ + K L + + I W ++ +
Sbjct: 148 IMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDI 207
Query: 944 DTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK 1003
+ +V + D + + + + K AP
Sbjct: 208 RSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVA----GSSYDTGKEIIKEVYGKEAPL- 262
Query: 1004 ALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 1054
L + FV + + KMS SKGN+I L + ++R A +K++
Sbjct: 263 -SLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 313
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.5 bits (119), Expect = 1e-06
Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 7/172 (4%)
Query: 2034 HWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSN 2093
+ + K L + + I W ++ +
Sbjct: 148 IMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDI 207
Query: 2094 DTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYK 2153
+ +V + D + + + + K AP
Sbjct: 208 RSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVA----GSSYDTGKEIIKEVYGKEAPL- 262
Query: 2154 ALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDL 2204
L + FV + + KMS SKGN+I L + ++R A +K++
Sbjct: 263 -SLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI 313
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Score = 56.5 bits (135), Expect = 1e-08
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNS------KILQKVMGSISLKNMLIETDSPYLSPIP 54
+LD ++I+LG Y+ F I +L + L +++ D S +
Sbjct: 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK 250
Query: 55 HRAK 58
Sbjct: 251 ANGG 254
|
| >d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Length = 72 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: YggJ N-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Score = 49.5 bits (118), Expect = 7e-08
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 206 RFYYPIP---FIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISI-KKK 260
R++ + + V+H+ NV+R+ + II + G E +L S+ K K
Sbjct: 2 RYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDK 61
Query: 261 ILIQIISFL 269
+ +I +
Sbjct: 62 VSCLVIEWT 70
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 50.2 bits (119), Expect = 2e-07
Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 45/175 (25%)
Query: 632 GKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 691
G G+I I T P T+ A+QA+ VHPE +
Sbjct: 12 GGGFIEIATVRPETVFADQAIAVHPEDER------------------------------- 40
Query: 692 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL 751
PI + D GTG + PA+ D+
Sbjct: 41 -------------YRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYE 87
Query: 752 IFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 806
I ++ +K +IN G+ ++A + +++ L E
Sbjct: 88 IGERHGLKPVSVINL-EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE 141
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 50.2 bits (119), Expect = 2e-07
Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 45/175 (25%)
Query: 1782 GKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKG 1841
G G+I I T P T+ A+QA+ VHPE +
Sbjct: 12 GGGFIEIATVRPETVFADQAIAVHPEDER------------------------------- 40
Query: 1842 NIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFL 1901
PI + D GTG + PA+ D+
Sbjct: 41 -------------YRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYE 87
Query: 1902 IFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956
I ++ +K +IN G+ ++A + +++ L E
Sbjct: 88 IGERHGLKPVSVINL-EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE 141
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Score = 51.5 bits (122), Expect = 5e-07
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 2 LDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A++ I+LGF + G VT+ ++ L++V+ + L+ +++ETD P+L P P R K
Sbjct: 162 YEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGK 218
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Score = 49.6 bits (117), Expect = 2e-06
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
+ A ++++LGFYISFSGIVTF+N++ L+ + L +L+ETDSPYL+P+PHR K
Sbjct: 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGK 217
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 218 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 1071 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 1130
+ N RF+L + F + + D++ ++ +EI + Y + +
Sbjct: 4 LYNAARFVLLSREGFQAKEDTPTL-----ADRFMRSRLSRGVEEITALYEALDLAQAARE 58
Query: 1131 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 1190
+ + +YL+ K L ++ + LL+L+ P++ F + E
Sbjct: 59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTL------EEVLAVLLKLLHPMMPFLTSEL 112
Query: 1191 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQK 1241
+ + K + + + + +R+ +
Sbjct: 113 YQALTGKEELALEAWPEPGGRDEEAERAFE-----ALKQAVTAVRALKAEA 158
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 218 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 44.7 bits (104), Expect = 6e-05
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 16/171 (9%)
Query: 2221 IRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSK 2280
+ N RF+L + F + + D++ ++ +EI + Y + +
Sbjct: 4 LYNAARFVLLSREGFQAKEDTPTL-----ADRFMRSRLSRGVEEITALYEALDLAQAARE 58
Query: 2281 LQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEA 2340
+ + +YL+ K L ++ + LL+L+ P++ F + E
Sbjct: 59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTL------EEVLAVLLKLLHPMMPFLTSEL 112
Query: 2341 WSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKYMILKKIRSKVMQK 2391
+ + K + + + + +R+ +
Sbjct: 113 YQALTGKEELALEAWPEPGGRDEEAERAFE-----ALKQAVTAVRALKAEA 158
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Score = 43.5 bits (101), Expect = 2e-04
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 6 REIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPHRAK 58
++LG+ I G +T+ + + V+ + L ++L+ETD+P + + +
Sbjct: 167 ERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQ 219
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2492 | |||
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1udza_ | 179 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1nxza2 | 174 | Hypothetical protein HI0303 {Haemophilus influenza | 100.0 | |
| d1vhka2 | 180 | Hypothetical protein YqeU {Bacillus subtilis [TaxI | 100.0 | |
| d1ffya2 | 194 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1nxza2 | 174 | Hypothetical protein HI0303 {Haemophilus influenza | 100.0 | |
| d1udza_ | 179 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1vhka2 | 180 | Hypothetical protein YqeU {Bacillus subtilis [TaxI | 100.0 | |
| d1v6za2 | 162 | Hypothetical protein TTHA0657 (TT1575) {Thermus th | 100.0 | |
| d1ffya2 | 194 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1v6za2 | 162 | Hypothetical protein TTHA0657 (TT1575) {Thermus th | 100.0 | |
| d1wkaa1 | 143 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.98 | |
| d1wkaa1 | 143 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.97 | |
| d1z3aa1 | 156 | tRNA adenosine deaminase TadA {Escherichia coli [T | 99.97 | |
| d1wwra1 | 151 | tRNA adenosine deaminase TadA {Aquifex aeolicus [T | 99.97 | |
| d2b3ja1 | 151 | tRNA adenosine deaminase TadA {Staphylococcus aure | 99.97 | |
| d1h3na2 | 192 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.96 | |
| d1h3na2 | 192 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.95 | |
| d2a8na1 | 130 | Cytidine and deoxycytidylate deaminase CodA {Agrob | 99.95 | |
| d2g84a1 | 189 | Putative deaminase NE0047 {Nitrosomonas europaea [ | 99.94 | |
| d1wkqa_ | 158 | Guanine deaminase GuaD {Bacillus subtilis [TaxId: | 99.94 | |
| d1p6oa_ | 156 | Cytosine deaminase {Baker's yeast (Saccharomyces c | 99.94 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.93 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.92 | |
| d2hxva2 | 147 | Riboflavin biosynthesis protein RibD {Thermotoga m | 99.92 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.92 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.92 | |
| d2b3za2 | 145 | Riboflavin biosynthesis protein RibD {Bacillus sub | 99.91 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.9 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.9 | |
| d1vq2a_ | 193 | Deoxycytidylate deaminase {Bacteriophage T4 [TaxId | 99.8 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.7 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.65 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.54 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.51 | |
| d1z3aa1 | 156 | tRNA adenosine deaminase TadA {Escherichia coli [T | 99.44 | |
| d1wwra1 | 151 | tRNA adenosine deaminase TadA {Aquifex aeolicus [T | 99.38 | |
| d2b3ja1 | 151 | tRNA adenosine deaminase TadA {Staphylococcus aure | 99.33 | |
| d1nxza1 | 72 | Hypothetical protein HI0303 {Haemophilus influenza | 99.23 | |
| d2g84a1 | 189 | Putative deaminase NE0047 {Nitrosomonas europaea [ | 99.17 | |
| d2b3za2 | 145 | Riboflavin biosynthesis protein RibD {Bacillus sub | 99.03 | |
| d1vhka1 | 72 | Hypothetical protein YqeU {Bacillus subtilis [TaxI | 99.02 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.0 | |
| d2a8na1 | 130 | Cytidine and deoxycytidylate deaminase CodA {Agrob | 98.98 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 98.98 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 98.94 | |
| d2hxva2 | 147 | Riboflavin biosynthesis protein RibD {Thermotoga m | 98.91 | |
| d1p6oa_ | 156 | Cytosine deaminase {Baker's yeast (Saccharomyces c | 98.89 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 98.86 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 98.76 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 98.65 | |
| d1wkqa_ | 158 | Guanine deaminase GuaD {Bacillus subtilis [TaxId: | 98.64 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 98.61 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 98.55 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 98.55 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 97.92 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 97.79 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 97.76 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 97.62 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 97.5 | |
| d1vq2a_ | 193 | Deoxycytidylate deaminase {Bacteriophage T4 [TaxId | 97.31 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 96.92 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 96.84 | |
| d1r5ta_ | 141 | mono-domain cytidine deaminase {Baker's yeast (Sac | 96.25 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 96.08 | |
| d2d30a1 | 124 | mono-domain cytidine deaminase {Bacillus anthracis | 96.03 | |
| d1alna2 | 144 | Two-domain cytidine deaminase {Escherichia coli [T | 95.93 | |
| d1v6za1 | 63 | Hypothetical protein TTHA0657 (TT1575) {Thermus th | 95.9 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 95.89 | |
| d2fr5a1 | 136 | mono-domain cytidine deaminase {Mouse (Mus musculu | 95.72 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 95.72 | |
| d1alna1 | 150 | Two-domain cytidine deaminase {Escherichia coli [T | 95.71 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 95.25 | |
| d1uwza_ | 130 | mono-domain cytidine deaminase {Bacillus subtilis | 95.02 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 94.72 | |
| d2z3ga1 | 123 | Blasticidin-S deaminase {Aspergillus terreus [TaxI | 94.28 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 92.9 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 92.82 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 92.24 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 91.81 | |
| d2qwva1 | 201 | Uncharacterized protein VCA1059 {Vibrio cholerae [ | 88.35 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 87.88 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 87.42 | |
| d2qmma1 | 194 | Uncharacterized protein AF1056 {Archaeoglobus fulg | 84.86 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 84.04 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 83.13 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 82.78 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 81.61 |
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.1e-84 Score=841.85 Aligned_cols=426 Identities=46% Similarity=0.842 Sum_probs=390.7
Q ss_pred hhccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccc
Q psy15223 1567 ILNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGY 1646 (2492)
Q Consensus 1567 ~~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 1646 (2492)
+|+++++++|++||++|+++++|++..+.++++++|+|++|||||||.||||||+|++++||++||+||+||+|+|++||
T Consensus 15 ~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~ 94 (450)
T d1ffya3 15 PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94 (450)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEE
T ss_pred CCCCChHHHHHHHHHHHHHCCCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 57899999999999999999999987766778899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCC
Q psy15223 1647 DCHGMPIEIQIEKLYGK--NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKG 1724 (2492)
Q Consensus 1647 D~hGlPie~~a~k~~~~--~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kG 1724 (2492)
||||+|||.++++.... +++++++++.|++++.++++.++.+|++||+++||+++|.|+||.|++.++++|.+|+++|
T Consensus 95 D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G 174 (450)
T d1ffya3 95 DTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKG 174 (450)
T ss_dssp BCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcHHHHHHHhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcC
Confidence 99999999999887443 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEE
Q psy15223 1725 YVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHV 1804 (2492)
Q Consensus 1725 liyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v 1804 (2492)
+||++.+||+|||.|+|+|+++|++
T Consensus 175 ~iy~~~~~v~~~p~~~~~~~~~e~~------------------------------------------------------- 199 (450)
T d1ffya3 175 LIYKGKKPVYWSPSSESSLAEAEIE------------------------------------------------------- 199 (450)
T ss_dssp CEEEEEEEEEEETTTTEECCGGGEE-------------------------------------------------------
T ss_pred CeeccccccccccccCccccccccc-------------------------------------------------------
Confidence 9999999999999999998776543
Q ss_pred cCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCC
Q psy15223 1805 HPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDS 1884 (2492)
Q Consensus 1805 ~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~ 1884 (2492)
T Consensus 200 -------------------------------------------------------------------------------- 199 (450)
T d1ffya3 200 -------------------------------------------------------------------------------- 199 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccc
Q psy15223 1885 GTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMH 1964 (2492)
Q Consensus 1885 GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~ 1964 (2492)
+|+
T Consensus 200 -----------------------------------------------------------------------------~~~ 202 (450)
T d1ffya3 200 -----------------------------------------------------------------------------YPH 202 (450)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 256
Q ss_pred ccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEE
Q psy15223 1965 CWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIH 2044 (2492)
Q Consensus 1965 ~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~ 2044 (2492)
||||++|++++.++|||+++.. +++.+++.++.+++.|+..+.++..|+++++||||||||+||+|||+++|
T Consensus 203 ~~r~~~~~~~~~~~qwf~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dw~iSRqr~WG~piP~~~~ 274 (450)
T d1ffya3 203 DWRTKKPVIFRATPQWFASISK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYA 274 (450)
T ss_dssp ETTTCCBCEEEEEEEEEECHHH--------HHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEEC
T ss_pred cccccCCceeeccccceecccc--------ccccchhhcccccccccccceeeeccccCccchheeeecccccCcceeec
Confidence 8999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcC-------CCccCceecccccccccccCcchhhhccCCcccc
Q psy15223 2045 KKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLG-------DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQ 2117 (2492)
Q Consensus 2045 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~-------~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~ 2117 (2492)
.+++.+ ...+.+..+.+.....|...|......+... .....+.+++|++|+|||||+++...+.... .
T Consensus 275 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~~--~ 350 (450)
T d1ffya3 275 ENGEII--MTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRP--E 350 (450)
T ss_dssp TTSCEE--CCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTST--T
T ss_pred CCCCEe--cchhhhHHHHHhhhhcCccccccccccccccccccccCCCCCcceeeeeeecccccccccccccccccc--c
Confidence 887655 3456666777777777777666655554432 2356689999999999999999988876654 5
Q ss_pred CCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2118 LIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2118 ~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
.+||+|++++|+||+|+||+++++.+.++.+..||++|++||||+|.+|+|||||+||+|+|.++|++||+|+|||||++
T Consensus 351 ~~~P~d~~~~G~Di~r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s 430 (450)
T d1ffya3 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS 430 (450)
T ss_dssp CCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT
T ss_pred ccCCCcccccCcchhhHHHHHHHHHHHHhcCCCCcceEEEcceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccHHHHHHHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~ 2216 (2492)
+++++|++|+++.|+++.+
T Consensus 431 ~~~~~D~~fs~~~l~~~~~ 449 (450)
T d1ffya3 431 TDYLADVRISDEILKQTSD 449 (450)
T ss_dssp SCTTSCEECCHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHhhc
Confidence 8999999999999987754
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.2e-81 Score=813.45 Aligned_cols=405 Identities=46% Similarity=0.841 Sum_probs=371.0
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc--C
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--N 514 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--~ 514 (2492)
.+|.... +++++++|+|++|||||||.||||||+|+|++||++||+||+||+|+|++||||||+|||.++++.... +
T Consensus 35 ~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~ 114 (450)
T d1ffya3 35 DQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKK 114 (450)
T ss_dssp THHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTT
T ss_pred CCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCcccc
Confidence 4555544 566788999999999999999999999999999999999999999999999999999999999987543 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccc
Q psy15223 515 LSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALA 594 (2492)
Q Consensus 515 ~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLa 594 (2492)
++++++++.|++++.++++.|+++|++||+++||+++|.|+||.|++.++++|.+|+++|+||++.+||+|||.|+|+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~ 194 (450)
T d1ffya3 115 MSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLA 194 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECC
T ss_pred ccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceee
Q psy15223 595 EAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLI 674 (2492)
Q Consensus 595 e~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i 674 (2492)
++|++
T Consensus 195 ~~e~~--------------------------------------------------------------------------- 199 (450)
T d1ffya3 195 EAEIE--------------------------------------------------------------------------- 199 (450)
T ss_dssp GGGEE---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 76553
Q ss_pred eeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHH
Q psy15223 675 LAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFK 754 (2492)
Q Consensus 675 ~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~ 754 (2492)
T Consensus 200 -------------------------------------------------------------------------------- 199 (450)
T d1ffya3 200 -------------------------------------------------------------------------------- 199 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeec
Q psy15223 755 KQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINM 834 (2492)
Q Consensus 755 ~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~ 834 (2492)
||+||||++|++++.++|||+++
T Consensus 200 ---------------------------------------------------------~~~~~r~~~~~~~~~~~qwf~~~ 222 (450)
T d1ffya3 200 ---------------------------------------------------------YPHDWRTKKPVIFRATPQWFASI 222 (450)
T ss_dssp ---------------------------------------------------------EEEETTTCCBCEEEEEEEEEECH
T ss_pred ---------------------------------------------------------ccccccccCCceeeccccceecc
Confidence 35799999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHH
Q psy15223 835 DKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKK 914 (2492)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~ 914 (2492)
.. +++.+++.++.+++.|++++.++..|+++++||||||||+||+|||+++|.+++.. ...+.+..+.+.
T Consensus 223 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dw~iSRqr~WG~piP~~~~~~~~~~--~~~~~~~~~~~~ 292 (450)
T d1ffya3 223 SK--------VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEII--MTKETVNHVADL 292 (450)
T ss_dssp HH--------HHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEE--CCHHHHHHHHHH
T ss_pred cc--------ccccchhhcccccccccccceeeeccccCccchheeeecccccCcceeecCCCCEe--cchhhhHHHHHh
Confidence 88 99999999999999999999999999999999999999999999999999876554 356777788888
Q ss_pred HhhcCCccccccCchhhcC-------CCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHH
Q psy15223 915 IELNGIEIWQNLDIKEFLG-------DDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFH 987 (2492)
Q Consensus 915 ~~~~g~~~w~~~~~~~~~~-------~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~ 987 (2492)
....|...|......+++. .....+.+++|+||+|||||+++.+.+.... ..+||+|++++|+||+||||+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~~--~~~~P~d~~~~G~Di~r~w~~ 370 (450)
T d1ffya3 293 FAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRP--ELSFPADMYLEGSDQYRGWFN 370 (450)
T ss_dssp HHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTST--TCCSSBSEEEEEGGGGTTHHH
T ss_pred hhhcCccccccccccccccccccccCCCCCcceeeeeeecccccccccccccccccc--cccCCCcccccCcchhhHHHH
Confidence 8888888777766655432 2356789999999999999999988876654 578999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhccCcccccccCHHHHHHHHH
Q psy15223 988 SSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVASTDYSKDLSISNEILNRVVE 1066 (2492)
Q Consensus 988 s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s~~~~~d~~fs~~~l~~~~~ 1066 (2492)
++++.+.++.+..||++|++||||+|.+|+|||||+||+|+|.++|++||+|+||||++++++++|++||++.|+++++
T Consensus 371 ~~~~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~~~~~ 449 (450)
T d1ffya3 371 SSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449 (450)
T ss_dssp HHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcceEEEcceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHcCCCCCCcCcCHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988754
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4e-68 Score=698.92 Aligned_cols=430 Identities=27% Similarity=0.513 Sum_probs=363.1
Q ss_pred hccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccc
Q psy15223 1568 LNGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYD 1647 (2492)
Q Consensus 1568 ~~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 1647 (2492)
.+.|++++|++||++|+++++|+...+.++++++|+|++|||||||.|||||+++++++||++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D 85 (452)
T d1ilea3 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (452)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCccCCccccCCCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcC
Confidence 35788999999999999999999887778888999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHH
Q psy15223 1648 CHGMPIEIQIEKLYGK-------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGII 1720 (2492)
Q Consensus 1648 ~hGlPie~~a~k~~~~-------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L 1720 (2492)
+||+|||.+|++..+. ....+++.+.|++++.++.+.+.++++++|++.||+++|.|+|+.|.+.++++|.+|
T Consensus 86 ~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l 165 (452)
T d1ilea3 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (452)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccchhHHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHH
Confidence 9999999999987543 234578899999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhcccc
Q psy15223 1721 FKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQ 1800 (2492)
Q Consensus 1721 ~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ 1800 (2492)
+++|+||++..+++||+.|++.+++.+++
T Consensus 166 ~~~G~iy~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 194 (452)
T d1ilea3 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVA--------------------------------------------------- 194 (452)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHH---------------------------------------------------
T ss_pred HhcCCcccccccchhhccccccccccccc---------------------------------------------------
Confidence 99999999999999999998887653332
Q ss_pred EEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCcc
Q psy15223 1801 ALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYI 1880 (2492)
Q Consensus 1801 ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V 1880 (2492)
T Consensus 195 -------------------------------------------------------------------------------- 194 (452)
T d1ilea3 195 -------------------------------------------------------------------------------- 194 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecc
Q psy15223 1881 TVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEH 1960 (2492)
Q Consensus 1881 ~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h 1960 (2492)
+
T Consensus 195 -------------------------------------------------------------------------------~ 195 (452)
T d1ilea3 195 -------------------------------------------------------------------------------L 195 (452)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred ccccccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccc-hhHHHHhhhCCCCcccccccCCCcee
Q psy15223 1961 SYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPI 2039 (2492)
Q Consensus 1961 ~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~-~~~~~~~l~~~~DW~ISRqr~WG~pI 2039 (2492)
.+|+|+|||+|++++.+.|||++++. +++.+.+.+...++.|+.. ..++..|+++++||||||||+||+|+
T Consensus 196 ~~p~c~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~dw~IsR~~~wg~~i 267 (452)
T d1ilea3 196 GYPHCWRCSTPLMYYATESWFIKNTL--------FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPL 267 (452)
T ss_dssp TEEBCSSSCCBCEEEECCEEEECGGG--------GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBC
T ss_pred cCCCccCcCCceEEeeccchhhhhcc--------chhhhhhhhcccccCcchhhhceeeeeccCCccceeecccccccCC
Confidence 23689999999999999999999999 8888888888888888865 45788999999999999999999999
Q ss_pred eEEEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchh---hhcCCCccCceecccccccccccCcchhhhccCCccc
Q psy15223 2040 AFFIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIK---EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK 2116 (2492)
Q Consensus 2040 P~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~---~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~ 2116 (2492)
|++.++.++....... ............+...+...... +........+.+.+|++|+||+|++++........+.
T Consensus 268 p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~ 346 (452)
T d1ilea3 268 PIWVCQACGKEEAIGS-FQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEH 346 (452)
T ss_dssp CEEEESSSSCCEECCS-HHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSC
T ss_pred ccccccccCcccccch-hhhhhhhhccccCccccccccccccccccccccccccccccccccccccccchhhhccCccch
Confidence 9999988765432111 11111110000000000000000 0011223457789999999999999988877554322
Q ss_pred ----cCCcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHH
Q psy15223 2117 ----QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILR 2192 (2492)
Q Consensus 2117 ----~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR 2192 (2492)
..++|+|++++|.|++++|||+++++++++.+..||++|++|||+++.+|+|||||+||+|+|.+++++||+|+||
T Consensus 347 ~~~~~~~~p~~~~~~g~d~~~~~fh~l~~~~~l~~~~~~~~~v~~hg~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR 426 (452)
T d1ilea3 347 EEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALR 426 (452)
T ss_dssp HHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHH
T ss_pred hhhcccCCcchhheecCceechhhHHHHHhHHHHcCCCCCCeEEEeeEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHH
Confidence 2348999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-cCCCCcccccHHHHHHHHH
Q psy15223 2193 LWVAS-TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2193 ~~l~s-~~~~~d~~fs~~~l~~~~~ 2216 (2492)
|||++ +++++|++|+++.++++.+
T Consensus 427 ~yl~~~~~~~~d~~Fs~~~~~e~~~ 451 (452)
T d1ilea3 427 WYIYVSAPPEADRRFGPNLVRETVR 451 (452)
T ss_dssp HHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCcCHHHHhHHhc
Confidence 99986 7889999999999987653
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.5e-64 Score=653.14 Aligned_cols=406 Identities=27% Similarity=0.511 Sum_probs=350.8
Q ss_pred cccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccC
Q psy15223 1570 GELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCH 1649 (2492)
Q Consensus 1570 a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~h 1649 (2492)
.++.++|++||++|.+++.|.. .+.++++|+|++|||||||.|||||+++++++||++||+||+||+|+|++|||+|
T Consensus 7 ~~~~~~e~~~~~~w~~~~~~~~---~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~h 83 (425)
T d1ivsa4 7 YDPKSVEPKWAEKWAKNPFVAN---PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHA 83 (425)
T ss_dssp CCGGGTHHHHHHHHHSSCCCCC---TTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCC
T ss_pred CChHHHHHHHHHHHHHCCcccC---CCCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCC
Confidence 4788899999999999987764 4567899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhC
Q psy15223 1650 GMPIEIQIEKLYGK------NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKK 1723 (2492)
Q Consensus 1650 GlPie~~a~k~~~~------~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~k 1723 (2492)
|+||+.+|++.... +++++.++..|..++.++++.++.+|++||+++||+.+++|+++.|.+.++++|.+|+++
T Consensus 84 G~~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~ 163 (425)
T d1ivsa4 84 GIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHE 163 (425)
T ss_dssp THHHHHHHHHHHHTTTCCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHhhcccCCChHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhcc
Confidence 99999999987421 578889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEE
Q psy15223 1724 GYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALH 1803 (2492)
Q Consensus 1724 Gliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~ 1803 (2492)
|+||++.++|+|||.|+|+|++.+++
T Consensus 164 G~iy~~~~~~~~c~~~~~~l~~~~~~------------------------------------------------------ 189 (425)
T d1ivsa4 164 GLAYRAPRLVNWCPRCETTLSDLEVE------------------------------------------------------ 189 (425)
T ss_dssp SSEEEECCEEEEETTTTEECCGGGEE------------------------------------------------------
T ss_pred Ccccccceeecccccccccccccccc------------------------------------------------------
Confidence 99999999999999999988663321
Q ss_pred EcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccC
Q psy15223 1804 VHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVD 1883 (2492)
Q Consensus 1804 v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~ 1883 (2492)
T Consensus 190 -------------------------------------------------------------------------------- 189 (425)
T d1ivsa4 190 -------------------------------------------------------------------------------- 189 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccc
Q psy15223 1884 SGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYM 1963 (2492)
Q Consensus 1884 ~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p 1963 (2492)
T Consensus 190 -------------------------------------------------------------------------------- 189 (425)
T d1ivsa4 190 -------------------------------------------------------------------------------- 189 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcEEEeecccceeecCCCCcchhHHHHHHHHHhhh--cceEecccchhHHHHhhhCCCCcccccccCCCceeeE
Q psy15223 1964 HCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAF 2041 (2492)
Q Consensus 1964 ~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~--~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~ 2041 (2492)
.|++|+.+.+.+.++|||+.+++ ..+......+ ...|.|+..+..+..+++.++||||||++.||+|+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l~d~~isr~~~~g~~~~~ 261 (425)
T d1ivsa4 190 TCSRCGTPIEYAIFPQWWLRMRP--------LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA 261 (425)
T ss_dssp EETTTCSBCEEEECCEEEECHHH--------HHHHHHHHHHHTCCEESSSTHHHHHHHHHHTCCCEECEECCSSSCCCCC
T ss_pred cccccCcccccccccchhhccch--------hhccchhhhhcCCcceeccccceeeehhhhhcCcceeecccccCCccce
Confidence 35567778888889999999988 6666666654 5788999999999999999999999999999999999
Q ss_pred EEECCCCcccCCcHHHHHHHHHHHhhcCcccccccchhhhcCCCccCceecccccccccccCcchhhhccCCcc---ccC
Q psy15223 2042 FIHKKSGKLHPKTLELIELIAKKIELNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHK---KQL 2118 (2492)
Q Consensus 2042 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~---~~~ 2118 (2492)
+++..++....... ..|.... ...-......+....|++++||||++++++.+....+ .+.
T Consensus 262 ~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~~~~~~ 325 (425)
T d1ivsa4 262 WYCEDCQAVNVPRP---------------ERYLEDP-TSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKA 325 (425)
T ss_dssp EEETTTCCEECCCG---------------GGTTCCC-CSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTCSHHHH
T ss_pred eeccCcceeecCcc---------------ccccccc-cccccccCccccccCccccccccchhHHHHhhCCCcChHHHhC
Confidence 99988765432111 0000000 0000112345677889999999999999887754432 256
Q ss_pred CcCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-
Q psy15223 2119 IFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS- 2197 (2492)
Q Consensus 2119 ~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s- 2197 (2492)
++|+|++++|+|++++|+.+.++++.++.+..||++|++|||+|+.+|+|||||+||+|+|++++++||+|+|||||++
T Consensus 326 ~~p~di~~~G~Di~~~h~~~~~a~~~~~~~~~p~~~v~~hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~ 405 (425)
T d1ivsa4 326 FYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYL 405 (425)
T ss_dssp SCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCceEEEEEehhhhHHHHHHHHHHHHhcCCCccceEEEcceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCCCcccccHHHHHHHHH
Q psy15223 2198 TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2198 ~~~~~d~~fs~~~l~~~~~ 2216 (2492)
++.++|++|+++.++.+.+
T Consensus 406 ~~~~~d~dF~~~~~~~~~n 424 (425)
T d1ivsa4 406 ATGGQDIRLDLRWLEMARN 424 (425)
T ss_dssp CCTTCCEECCHHHHHHHHH
T ss_pred CCCCCCCccCHHHhhhccC
Confidence 6788999999998876544
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.8e-65 Score=668.73 Aligned_cols=405 Identities=27% Similarity=0.527 Sum_probs=343.0
Q ss_pred ccccccc-ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc---
Q psy15223 438 GVWGEIK-ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK--- 513 (2492)
Q Consensus 438 ~ly~~~~-~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~--- 513 (2492)
.+|+... +++++++|+|++|||||||.||||||++++++||++||+||+||+|+|++|||+||+|||.+|++..+.
T Consensus 25 ~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~~~~~~~ 104 (452)
T d1ilea3 25 KIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSK 104 (452)
T ss_dssp THHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSH
T ss_pred CCccCCccccCCCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHhhccccc
Confidence 4454444 567789999999999999999999999999999999999999999999999999999999999987543
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCC
Q psy15223 514 ----NLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDC 589 (2492)
Q Consensus 514 ----~~~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~ 589 (2492)
....++|.+.|++++.++.+.+.+++++||++.||+++|.|+|+.|.+.++++|.+|+++|+||++..+++||+.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~ 184 (452)
T d1ilea3 105 REIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184 (452)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTT
T ss_pred cchhHHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhccc
Confidence 2245789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCC
Q psy15223 590 KSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDP 669 (2492)
Q Consensus 590 ~taLae~Evey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~ 669 (2492)
++.+++.+++
T Consensus 185 ~~~~~~~~~~---------------------------------------------------------------------- 194 (452)
T d1ilea3 185 GTPLSSHEVA---------------------------------------------------------------------- 194 (452)
T ss_dssp TEECCHHHHH----------------------------------------------------------------------
T ss_pred cccccccccc----------------------------------------------------------------------
Confidence 8877653332
Q ss_pred CceeeeeHHhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHH
Q psy15223 670 PLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIED 749 (2492)
Q Consensus 670 ~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D 749 (2492)
T Consensus 195 -------------------------------------------------------------------------------- 194 (452)
T d1ilea3 195 -------------------------------------------------------------------------------- 194 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeeccc
Q psy15223 750 FLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQ 829 (2492)
Q Consensus 750 ~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~Q 829 (2492)
+.+|+|||||+|++++.+.|
T Consensus 195 ------------------------------------------------------------~~~p~c~~~~~~~~~~~~~~ 214 (452)
T d1ilea3 195 ------------------------------------------------------------LGYPHCWRCSTPLMYYATES 214 (452)
T ss_dssp ------------------------------------------------------------HTEEBCSSSCCBCEEEECCE
T ss_pred ------------------------------------------------------------ccCCCccCcCCceEEeeccc
Confidence 22478999999999999999
Q ss_pred ceeecCCCCcchhHHHHHHHHHHhhcceEecchh-hHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHH
Q psy15223 830 WFINMDKIPKNEKKSLRESAITAINKIKFFPSWG-KDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELI 908 (2492)
Q Consensus 830 WFi~~~~~~~~~~~~~~~~~~~~i~~v~~~P~~~-~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i 908 (2492)
||++++. +++.+.+.+....+.|... ..++..|+++++||||||||.||+|+|++.++.++....... ..
T Consensus 215 ~~~~~~~--------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~-~~ 285 (452)
T d1ilea3 215 WFIKNTL--------FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGS-FQ 285 (452)
T ss_dssp EEECGGG--------GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCS-HH
T ss_pred hhhhhcc--------chhhhhhhhcccccCcchhhhceeeeeccCCccceeecccccccCCccccccccCcccccch-hh
Confidence 9999998 8888888888888888765 568899999999999999999999999999988876432211 11
Q ss_pred HHHHHHHhhcCCccccccCch-------hhcCCCccCceecCCccccccccccccchhcccCccc----cCCcCeeeeec
Q psy15223 909 ELIAKKIELNGIEIWQNLDIK-------EFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK----QLIFPADLYLE 977 (2492)
Q Consensus 909 ~~~~~~~~~~g~~~w~~~~~~-------~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~----~~~~p~Dl~~~ 977 (2492)
. .........+...... +........+.+..|++|+||+|+.++........+. ..++|+|++++
T Consensus 286 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 361 (452)
T d1ilea3 286 E----LKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAE 361 (452)
T ss_dssp H----HHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEE
T ss_pred h----hhhhhccccCccccccccccccccccccccccccccccccccccccccchhhhccCccchhhhcccCCcchhhee
Confidence 1 1111111111111110 0011224557888999999999999988777654322 45689999999
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCccccccc
Q psy15223 978 GSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSI 1056 (2492)
Q Consensus 978 G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~f 1056 (2492)
|.||+++|||+++++++++.+..||++|++|||+++.+|+|||||+||+|+|.+++++||+|+|||||++ +++++|++|
T Consensus 362 g~d~~~~~fh~l~~~~~l~~~~~~~~~v~~hg~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~~d~~F 441 (452)
T d1ilea3 362 GIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRF 441 (452)
T ss_dssp EGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEEC
T ss_pred cCceechhhHHHHHhHHHHcCCCCCCeEEEeeEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 788999999
Q ss_pred CHHHHHHHH
Q psy15223 1057 SNEILNRVV 1065 (2492)
Q Consensus 1057 s~~~l~~~~ 1065 (2492)
|++.++++.
T Consensus 442 s~~~~~e~~ 450 (452)
T d1ilea3 442 GPNLVRETV 450 (452)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhHHh
Confidence 999998764
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.7e-61 Score=625.28 Aligned_cols=384 Identities=27% Similarity=0.504 Sum_probs=332.6
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCc------CCCHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGK------NLSPI 518 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~------~~~~~ 518 (2492)
++.++++|+|++|||||||+||||||++++++||++||+||+||+|+|++|||+||+||+.+|++.... +++++
T Consensus 29 ~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~ 108 (425)
T d1ivsa4 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGRE 108 (425)
T ss_dssp TTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTT
T ss_pred CCCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHH
Confidence 456789999999999999999999999999999999999999999999999999999999999986421 57888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccc
Q psy15223 519 EIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEI 598 (2492)
Q Consensus 519 e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Ev 598 (2492)
.++..|..++.++++.++.+|++||++.||+++|+|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~~~~ 188 (425)
T d1ivsa4 109 KFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEV 188 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEECCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeeccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988865332
Q ss_pred cccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHH
Q psy15223 599 EYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFN 678 (2492)
Q Consensus 599 ey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~ 678 (2492)
T Consensus 189 -------------------------------------------------------------------------------- 188 (425)
T d1ivsa4 189 -------------------------------------------------------------------------------- 188 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCC
Q psy15223 679 LVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 758 (2492)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l 758 (2492)
T Consensus 189 -------------------------------------------------------------------------------- 188 (425)
T d1ivsa4 189 -------------------------------------------------------------------------------- 188 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCC
Q psy15223 759 KDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIP 838 (2492)
Q Consensus 759 ~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~ 838 (2492)
+.|++|+.+.+.+.++|||+.++.
T Consensus 189 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-- 212 (425)
T d1ivsa4 189 ------------------------------------------------------ETCSRCGTPIEYAIFPQWWLRMRP-- 212 (425)
T ss_dssp ------------------------------------------------------EEETTTCSBCEEEECCEEEECHHH--
T ss_pred ------------------------------------------------------ccccccCcccccccccchhhccch--
Confidence 136678888888999999999987
Q ss_pred cchhHHHHHHHHHHhh--cceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHh
Q psy15223 839 KNEKKSLRESAITAIN--KIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIE 916 (2492)
Q Consensus 839 ~~~~~~~~~~~~~~i~--~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~ 916 (2492)
..+......+ ...|.|+..+.++..++++++||||||++.||+|+|++++..++.......
T Consensus 213 ------~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l~d~~isr~~~~g~~~~~~~~~~~~~~~~~~~----------- 275 (425)
T d1ivsa4 213 ------LAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRP----------- 275 (425)
T ss_dssp ------HHHHHHHHHHHTCCEESSSTHHHHHHHHHHTCCCEECEECCSSSCCCCCEEETTTCCEECCCG-----------
T ss_pred ------hhccchhhhhcCCcceeccccceeeehhhhhcCcceeecccccCCccceeeccCcceeecCcc-----------
Confidence 6666666554 478899999999999999999999999999999999999988776431110
Q ss_pred hcCCccccccCchhhcCCCccCceecCCccccccccccccchhcccCccc---cCCcCeeeeecccccchhhHHHHHHHH
Q psy15223 917 LNGIEIWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK---QLIFPADLYLEGSDQHRGWFHSSLLTS 993 (2492)
Q Consensus 917 ~~g~~~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~---~~~~p~Dl~~~G~D~~rgwf~s~l~~~ 993 (2492)
..|.... ...-......+....|++++||||++++.+.++...+. ..++|+|+|++|+|++++|+.+.++++
T Consensus 276 ----~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~~~~~~~~p~di~~~G~Di~~~h~~~~~a~~ 350 (425)
T d1ivsa4 276 ----ERYLEDP-TSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSG 350 (425)
T ss_dssp ----GGTTCCC-CSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTCSHHHHSCSBSCEEEEGGGTTTTHHHHHHHH
T ss_pred ----ccccccc-cccccccCccccccCccccccccchhHHHHhhCCCcChHHHhCCCCceEEEEEehhhhHHHHHHHHHH
Confidence 0000000 00001123456778899999999999998877654322 578999999999999999999999999
Q ss_pred HHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHH
Q psy15223 994 IILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 1066 (2492)
Q Consensus 994 ~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~ 1066 (2492)
.++.+..||++|++|||+|+.+|+|||||+||+|+|++++++||+|+|||||++ ++.++|++||++.++++.+
T Consensus 351 ~~~~~~~p~~~v~~hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~~~~~~d~dF~~~~~~~~~n 424 (425)
T d1ivsa4 351 YHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARN 424 (425)
T ss_dssp HHHSSSCSBSEEEEECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHH
T ss_pred HHhcCCCccceEEEcceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhcCCCCCCCccCHHHhhhccC
Confidence 999999999999999999999999999999999999999999999999999997 6778999999998876543
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.2e-61 Score=637.75 Aligned_cols=410 Identities=24% Similarity=0.390 Sum_probs=320.3
Q ss_pred ccccCCCCchhHHHhhhcccchhcccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCcccccccccc
Q psy15223 1569 NGELSKREPGWIKKWQEKKIYHQIRKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDC 1648 (2492)
Q Consensus 1569 ~a~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 1648 (2492)
+++.+++|++||++|+++++|+.. ..+.++++|+|++|||||||.||||||+|++++||++||+||+||+|+|+|||||
T Consensus 3 ~Y~p~~iE~~~~~~W~~~~~~~~~-~~~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~ 81 (494)
T d1h3na3 3 KYNPHAIEAKWQRFWEEKGFMKAK-DLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDA 81 (494)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCC-SSCCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCC
T ss_pred CCCHHHHHHHHHHHHHHCCCcccC-ccccCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCc
Confidence 578999999999999999999764 3456789999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1649 HGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1649 hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
||+|||.+|+|. +. .|++|+.++.+.|+++|++||+++||+++|+|||+.|.+.++++|.+|+++|+||+
T Consensus 82 ~G~~~e~~~~k~---~~-------~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~ 151 (494)
T d1h3na3 82 FGLPAENAALKF---GV-------HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (494)
T ss_dssp SSHHHHHHHHHT---TC-------CHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred chHHHHHHHHHh---CC-------ChHHHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEe
Confidence 999999999875 33 45669999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCcccccccccceeeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCC
Q psy15223 1729 GLKPVNWCFDCKSALAEAEIEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEF 1808 (2492)
Q Consensus 1729 ~~~~v~wcp~~~t~Lad~Evey~~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~ 1808 (2492)
+.++|+|||.|+|+|||+||+...
T Consensus 152 ~~~~~~~~~~~~t~l~~~ev~~~~-------------------------------------------------------- 175 (494)
T d1h3na3 152 AKGLVNWCPKCQTVLANEQVVEGR-------------------------------------------------------- 175 (494)
T ss_dssp EEEEEEEETTTTEEECGGGEETTE--------------------------------------------------------
T ss_pred eeEEEEeecCccceecchhcccCc--------------------------------------------------------
Confidence 999999999999999999985100
Q ss_pred CEEEEEecCCCCceehhhHHhHHHHHHHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCce
Q psy15223 1809 DYALVHIKNDPPLLLILAFNLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGI 1888 (2492)
Q Consensus 1809 ~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~ 1888 (2492)
T Consensus 176 -------------------------------------------------------------------------------- 175 (494)
T d1h3na3 176 -------------------------------------------------------------------------------- 175 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCChhhHHHHHHcCCCCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccccccccc
Q psy15223 1889 VHSAPAYGIEDFLIFKKQNMKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRH 1968 (2492)
Q Consensus 1889 V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~ 1968 (2492)
.+..+
T Consensus 176 ---------------------------------------------------------------------------~~~~~ 180 (494)
T d1h3na3 176 ---------------------------------------------------------------------------CWRHE 180 (494)
T ss_dssp ---------------------------------------------------------------------------ESSCT
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00123
Q ss_pred CCcEEEeecccceeecCCCCcchhHHHHHHHHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCC
Q psy15223 1969 KTPIIYRTTLQWFINMDKIPKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSG 2048 (2492)
Q Consensus 1969 ~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~ 2048 (2492)
+.+|+++.++|||+.++. .++.+...+.... .|...+++...|++++.||||||++.||+++|++++..+.
T Consensus 181 ~~~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~d~~Isr~~~~~~~i~i~~~~~~~ 251 (494)
T d1h3na3 181 DTPVEKRELEQWYLRITA--------YAERLLKDLEGLN-WPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVHCEACG 251 (494)
T ss_dssp TSBCEEEEEEEEEECGGG--------GHHHHHHTTTTCB-SCHHHHHHHHHHHCSCCCEECEESCSSSEECCEEEETTTE
T ss_pred CceEEeeccCchhhhhhc--------ccccccccccccc-cccccccccccccccccccccccccccccceEEEeeccce
Confidence 445667778899999988 6777776665443 4667788999999999999999999999999999987654
Q ss_pred cccCCcHHH------HHHHHHHHhhcCcc------cccccchhhhcCCCccCceecccccccccccCcchhhhccCCccc
Q psy15223 2049 KLHPKTLEL------IELIAKKIELNGIE------IWQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK 2116 (2492)
Q Consensus 2049 ~~~~~~~~~------~~~i~~~~~~~g~~------~w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~ 2116 (2492)
......... ...... ....+.. .|++. ..........++.+++++||++++.+..........
T Consensus 252 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~L~~~~~~~~~----~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 326 (494)
T d1h3na3 252 VVPVPEEELPVLLPDLKDVED-IRPKGKSPLEAHPEFYET----TCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDR 326 (494)
T ss_dssp EEECCGGGCCCCCCCCCCHHH-HSCSSSCGGGGCHHHHEE----ECTTTCSEEEECCCEECHHHHTTSHHHHTTSTTCSS
T ss_pred eecccccchhccccccccccc-CCCcCCChhHhCcceeee----ecccCCCceEEeceecccceeecchhhhhccccccc
Confidence 321100000 000000 0111111 11111 112234557788999999999999887776543221
Q ss_pred --------cCCcCceeeecccchhhhhHHHHHHHHHH------hcCCccccEEEEe------------------------
Q psy15223 2117 --------QLIFPADLYLEGSDQHRGWFHSSLLTSII------LNKSAPYKALLTH------------------------ 2158 (2492)
Q Consensus 2117 --------~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~------l~~~~pfk~v~~h------------------------ 2158 (2492)
..++|+|.+..|.++...|....-+.... .....||++++.|
T Consensus 327 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~G~v~~~~~~~~~~~~~~~~~~~~~ 406 (494)
T d1h3na3 327 LPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEP 406 (494)
T ss_dssp SSSCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHH
T ss_pred ccccccccccccCceecccccceeeeeeecccchhhhhhcccccccchhcccccccCcEecCcccccccccccccccCCc
Confidence 33489999999988865444333322221 1234566666655
Q ss_pred -----------------------------eeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccH
Q psy15223 2159 -----------------------------GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISN 2208 (2492)
Q Consensus 2159 -----------------------------G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~ 2208 (2492)
|+|+|.+|+|||||+||||+|.++|++||||+|||||++ ++.++|++||+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl~ll~~s~~g~di~~s~ 486 (494)
T d1h3na3 407 TRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTE 486 (494)
T ss_dssp HHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECH
T ss_pred ceeeeeccccccchhhhhcccccccccCCccEEeCCceeCCCCCCCcCCHHHHHHHhCHHHHHHHHHhcCCcccCCCcCh
Confidence 555666788999999999999999999999999999995 68899999999
Q ss_pred HHHHHH
Q psy15223 2209 EILNRV 2214 (2492)
Q Consensus 2209 ~~l~~~ 2214 (2492)
+.++++
T Consensus 487 ~~ieg~ 492 (494)
T d1h3na3 487 EGVQGA 492 (494)
T ss_dssp HHHHHH
T ss_pred hcCeec
Confidence 998765
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5e-58 Score=609.65 Aligned_cols=394 Identities=25% Similarity=0.383 Sum_probs=304.5
Q ss_pred cccccccccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCH
Q psy15223 438 GVWGEIKASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSP 517 (2492)
Q Consensus 438 ~ly~~~~~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~ 517 (2492)
.+|.....++++++|+|++|||||||.||||||+|+|++||++||+||+|++|+|+|||||||||||.+|+|.
T Consensus 21 ~~~~~~~~~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~------- 93 (494)
T d1h3na3 21 GFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF------- 93 (494)
T ss_dssp TTTCCCSSCCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHT-------
T ss_pred CCcccCccccCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHh-------
Confidence 3454433567889999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCccccccc
Q psy15223 518 IEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAE 597 (2492)
Q Consensus 518 ~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~E 597 (2492)
...|++|+.++.+.|+++|++||+++||+++|+|||+.|++.++++|.+|+++|+||++.+||+|||.|+||||++|
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~t~l~~~e 170 (494)
T d1h3na3 94 ---GVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQ 170 (494)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGG
T ss_pred ---CCChHHHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCccceecchh
Confidence 34467799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeH
Q psy15223 598 IEYKKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAF 677 (2492)
Q Consensus 598 vey~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~ 677 (2492)
|+...
T Consensus 171 v~~~~--------------------------------------------------------------------------- 175 (494)
T d1h3na3 171 VVEGR--------------------------------------------------------------------------- 175 (494)
T ss_dssp EETTE---------------------------------------------------------------------------
T ss_pred cccCc---------------------------------------------------------------------------
Confidence 85100
Q ss_pred HhHHHHHHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcC
Q psy15223 678 NLVKSCLKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN 757 (2492)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~ 757 (2492)
T Consensus 176 -------------------------------------------------------------------------------- 175 (494)
T d1h3na3 176 -------------------------------------------------------------------------------- 175 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCC
Q psy15223 758 MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKI 837 (2492)
Q Consensus 758 l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~ 837 (2492)
.+..++.||+++.++|||+.+..
T Consensus 176 --------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~- 198 (494)
T d1h3na3 176 --------------------------------------------------------CWRHEDTPVEKRELEQWYLRITA- 198 (494)
T ss_dssp --------------------------------------------------------ESSCTTSBCEEEEEEEEEECGGG-
T ss_pred --------------------------------------------------------cccccCceEEeeccCchhhhhhc-
Confidence 01123456777888999999988
Q ss_pred CcchhHHHHHHHHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCccccCcHH------HHHHH
Q psy15223 838 PKNEKKSLRESAITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHPKTLE------LIELI 911 (2492)
Q Consensus 838 ~~~~~~~~~~~~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~------~i~~~ 911 (2492)
.++.+...+.... .|...+++...|++++.||||||+|.||+++|++++..+......... .+...
T Consensus 199 -------~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~d~~Isr~~~~~~~i~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (494)
T d1h3na3 199 -------YAERLLKDLEGLN-WPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDV 270 (494)
T ss_dssp -------GHHHHHHTTTTCB-SCHHHHHHHHHHHCSCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCH
T ss_pred -------ccccccccccccc-cccccccccccccccccccccccccccccceEEEeeccceeecccccchhccccccccc
Confidence 7777777766544 467788999999999999999999999999999998765432200000 00000
Q ss_pred HHHHhhcCCccccccCchhh----cCCCccCceecCCccccccccccccchhcccCccc--------cCCcCeeeeeccc
Q psy15223 912 AKKIELNGIEIWQNLDIKEF----LGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--------QLIFPADLYLEGS 979 (2492)
Q Consensus 912 ~~~~~~~g~~~w~~~~~~~~----~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--------~~~~p~Dl~~~G~ 979 (2492)
. .+...+...... .+++ .........++.+++++||++++.+.......... ..++|+|.+..|.
T Consensus 271 ~-~~~~~~~~~L~~--~~~~~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 347 (494)
T d1h3na3 271 E-DIRPKGKSPLEA--HPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGV 347 (494)
T ss_dssp H-HHSCSSSCGGGG--CHHHHEEECTTTCSEEEECCCEECHHHHTTSHHHHTTSTTCSSSSSCHHHHHHHCSBSEEECCG
T ss_pred c-cCCCcCCChhHh--CcceeeeecccCCCceEEeceecccceeecchhhhhcccccccccccccccccccCceeccccc
Confidence 0 011111111000 0111 11234556788999999999998877665433211 4568999999998
Q ss_pred ccchhhHHHHHHHHHHh------cCCCCceEEEEe---------------------------------------------
Q psy15223 980 DQHRGWFHSSLLTSIIL------NKSAPYKALLTH--------------------------------------------- 1008 (2492)
Q Consensus 980 D~~rgwf~s~l~~~~~~------~~~~p~k~v~~h--------------------------------------------- 1008 (2492)
++...|....-+..... ....||++++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (494)
T d1h3na3 348 EHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMG 427 (494)
T ss_dssp GGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTT
T ss_pred ceeeeeeecccchhhhhhcccccccchhcccccccCcEecCcccccccccccccccCCcceeeeeccccccchhhhhccc
Confidence 88765544443333221 134555665554
Q ss_pred --------eEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHH
Q psy15223 1009 --------GFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 1064 (2492)
Q Consensus 1009 --------G~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~ 1064 (2492)
|+|+|.+|+|||||+||||+|.++|++||||+||||+++ ++.++|++||++.++++
T Consensus 428 ~~~~~~~~g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl~ll~~s~~g~di~~s~~~ieg~ 492 (494)
T d1h3na3 428 AELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGA 492 (494)
T ss_dssp CEEEECTTSSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred ccccccCCccEEeCCceeCCCCCCCcCCHHHHHHHhCHHHHHHHHHhcCCcccCCCcChhcCeec
Confidence 556677788999999999999999999999999999985 67899999999988775
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=2.2e-48 Score=495.31 Aligned_cols=343 Identities=22% Similarity=0.254 Sum_probs=276.7
Q ss_pred CcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n-~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
.+|+|+.|||||||.|||||+.+ +|..|+++||+||+||+|.|++|||+||+|||.+|++. +.+|++ ++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~---g~~~~~-------~~ 71 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPRE-------IV 71 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHH-------HH
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHc---CCCHHH-------HH
Confidence 37999999999999999999875 88899999999999999999999999999999999987 888877 78
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
..+...+.+++..+++ +|+..+.|.++.+...++++|..++++|++|++..+++||+.|++.+
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 134 (361)
T d1rqga2 72 DEFHEQIKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFL--------------- 134 (361)
T ss_dssp HHHHHHHHHHHHHHTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCC---------------
T ss_pred HHHHHhhccccccccc--ccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceec---------------
Confidence 8889999999999998 67889999999999999999999999999999999999998764311
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 135 -------------------------------------------------------------------------------- 134 (361)
T d1rqga2 135 -------------------------------------------------------------------------------- 134 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
T Consensus 135 -------------------------------------------------------------------------------- 134 (361)
T d1rqga2 135 -------------------------------------------------------------------------------- 134 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
.++|++||.|+.++.++|||+++.. ++++
T Consensus 135 -------------------------------------------~~~~~~~g~~~~~~~~~~~f~~~~~--------~~~~ 163 (361)
T d1rqga2 135 -------------------------------------------PDRFAICGRPISFRDSAHYYIKMQD--------FAER 163 (361)
T ss_dssp -------------------------------------------CGGGTTTCCBCEEEEEEEEEECGGG--------THHH
T ss_pred -------------------------------------------ccccccCCCcccccccceEEEecch--------hhhh
Confidence 0257889999999999999999988 8899
Q ss_pred HHHHhhcceEecchhhHHHHHHHhcCCCeeeeccccCCceeeEEEECCCCcccc-CcHHHHHHHHHHHhhcCCccccccC
Q psy15223 849 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHP-KTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 849 ~~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr~WGvpIP~~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
+++.++...|.|...+.....+.++++||||||||+||+|+|+|.+..++.... .............. |
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---- 233 (361)
T d1rqga2 164 LKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIE------H---- 233 (361)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHH------H----
T ss_pred hhhcccccccccchhhhhhhccccccccccccccccccccCccccccCCCeEEEeeccccccccccccc------C----
Confidence 999999999999999888888888999999999999999999987766655420 00000000000000 0
Q ss_pred chhhcCCCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcC---------
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK--------- 998 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~--------- 998 (2492)
.......+.|+..... ....+.+++..|.|+.+.|+........+...
T Consensus 234 ------------~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (361)
T d1rqga2 234 ------------FKRIGKPNEWKKYWLN-----------IDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290 (361)
T ss_dssp ------------HHHTTCTTTTHHHHBC-----------SSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBC
T ss_pred ------------cccCCchhHHHHhhhh-----------ccCCcceEEeccccccccchhhHHHHHHHhhcccccccccc
Confidence 0001111111111111 12346789999999999887776666555432
Q ss_pred CCCceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHH
Q psy15223 999 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 1064 (2492)
Q Consensus 999 ~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~ 1064 (2492)
..+++++++|||+. .+|+|||||+||+|+|.|++++||+|+||||+++ ++.++|++||++.+...
T Consensus 291 ~~~p~~~~~~g~l~-~~G~KMSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~ 356 (361)
T d1rqga2 291 WNLPYDIPANEYLT-LEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVR 356 (361)
T ss_dssp BCCCSBCCEECCEE-ETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHH
T ss_pred CCCCCEEEEeeeEE-eCCEecCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHHHHH
Confidence 23458899999987 5699999999999999999999999999999997 57789999999988654
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=5e-48 Score=492.00 Aligned_cols=343 Identities=22% Similarity=0.258 Sum_probs=274.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhh-hHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVN-KILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
.+|+|+.|||||||.|||||+++ ++..|+++||+||+||+|+|++|||+||+||+.+|++. +++|++ ++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~---g~~~~~-------~~ 71 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE---GRSPRE-------IV 71 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TCCHHH-------HH
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHc---CCCHHH-------HH
Confidence 47999999999999999999775 89999999999999999999999999999999999988 889877 78
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
..+...+.+++..+++ +|+..+.|.++.+...++++|..++++|++|++..+++|||.++++++
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 135 (361)
T d1rqga2 72 DEFHEQIKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLP-------------- 135 (361)
T ss_dssp HHHHHHHHHHHHHHTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCC--------------
T ss_pred HHHHHhhccccccccc--ccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecc--------------
Confidence 8888999999999988 677889999999999999999999999999999999999987743210
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 136 -------------------------------------------------------------------------------- 135 (361)
T d1rqga2 136 -------------------------------------------------------------------------------- 135 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
T Consensus 136 -------------------------------------------------------------------------------- 135 (361)
T d1rqga2 136 -------------------------------------------------------------------------------- 135 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
++|++||.|+.++.++|||+++.. +++.
T Consensus 136 --------------------------------------------~~~~~~g~~~~~~~~~~~f~~~~~--------~~~~ 163 (361)
T d1rqga2 136 --------------------------------------------DRFAICGRPISFRDSAHYYIKMQD--------FAER 163 (361)
T ss_dssp --------------------------------------------GGGTTTCCBCEEEEEEEEEECGGG--------THHH
T ss_pred --------------------------------------------cccccCCCcccccccceEEEecch--------hhhh
Confidence 247789999999999999999998 8899
Q ss_pred HHHhhhcceEecccchhHHHHhhhCCCCcccccccCCCceeeEEEECCCCcccC-CcHHHHHHHHHHHhhcCcccccccc
Q psy15223 1999 AITAINKIKFFPSWGKDRLKSMILNRPDWTISRQRHWGVPIAFFIHKKSGKLHP-KTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 1999 ~~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr~WG~pIP~~~~~~~~~~~~-~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
+++.++...+.|...+.....+.++++|||||||++||+|+|++.+..++.... .............. |.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 234 (361)
T d1rqga2 164 LKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIE------HF--- 234 (361)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHH------HH---
T ss_pred hhhcccccccccchhhhhhhccccccccccccccccccccCccccccCCCeEEEeeccccccccccccc------Cc---
Confidence 999999999999998888887778999999999999999999987665544310 00000000000000 00
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhccCCccccCCcCceeeecccchhhhhHHHHHHHHHHhcC---------
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNK--------- 2148 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~--------- 2148 (2492)
......+.|+..... ....+.+++..|.|+.+.|+........+...
T Consensus 235 -------------~~~g~~~~~~~~~~~-----------~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (361)
T d1rqga2 235 -------------KRIGKPNEWKKYWLN-----------IDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290 (361)
T ss_dssp -------------HHTTCTTTTHHHHBC-----------SSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBC
T ss_pred -------------ccCCchhHHHHhhhh-----------ccCCcceEEeccccccccchhhHHHHHHHhhcccccccccc
Confidence 000011111111000 12356789999999999887766665555432
Q ss_pred CccccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHH
Q psy15223 2149 SAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRV 2214 (2492)
Q Consensus 2149 ~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~ 2214 (2492)
-.+++++++|||++ .+|+|||||+||+|+|.|++++||+|+|||||++ ++.++|++||++.+...
T Consensus 291 ~~~p~~~~~~g~l~-~~G~KMSKSlGN~I~~~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~ 356 (361)
T d1rqga2 291 WNLPYDIPANEYLT-LEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVR 356 (361)
T ss_dssp BCCCSBCCEECCEE-ETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHH
T ss_pred CCCCCEEEEeeeEE-eCCEecCCCCCCCCCHHHHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHHHHH
Confidence 23458899999987 5699999999999999999999999999999997 67899999999988653
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-46 Score=470.33 Aligned_cols=338 Identities=21% Similarity=0.247 Sum_probs=264.9
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHH
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 529 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~ 529 (2492)
++|+|+.|||||||.||||||+++++.|+++||+|++||+|.|++|||+||+||+.+|.+. ++++++ ++.
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~---g~~~~~-------~~~ 71 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQ-------MIG 71 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHH-------HHH
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHc---CCCHHH-------HHH
Confidence 6899999999999999999999999999999999999999999999999999999999987 889988 778
Q ss_pred HHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEEE
Q psy15223 530 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 609 (2492)
Q Consensus 530 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~y 609 (2492)
++...+.++++.||| ||+..+.|.++.|.+.++++|.+|+++|++|++..+++|||.|+++|+|.++.
T Consensus 72 ~~~~~~~~~~~~l~i--~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~---------- 139 (350)
T d1pfva2 72 EMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVV---------- 139 (350)
T ss_dssp HHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTT----------
T ss_pred hHHHHHHHHHHHcCC--CcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCceec----------
Confidence 889999999999998 88999999999999999999999999999999999999999999888653221
Q ss_pred EEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcCC
Q psy15223 610 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 689 (2492)
Q Consensus 610 v~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 689 (2492)
T Consensus 140 -------------------------------------------------------------------------------- 139 (350)
T d1pfva2 140 -------------------------------------------------------------------------------- 139 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccCC
Q psy15223 690 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 769 (2492)
Q Consensus 690 ~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd~ 769 (2492)
T Consensus 140 -------------------------------------------------------------------------------- 139 (350)
T d1pfva2 140 -------------------------------------------------------------------------------- 139 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 770 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 849 (2492)
Q Consensus 770 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~~ 849 (2492)
||.+++.+.++|||+++++ +++.+
T Consensus 140 ------------------------------------------------~g~~~~~~~~~~~f~~l~~--------~~~~l 163 (350)
T d1pfva2 140 ------------------------------------------------SGATPVMRDSEHFFFDLPS--------FSEML 163 (350)
T ss_dssp ------------------------------------------------TCCCCEEEEEEEEEECGGG--------GHHHH
T ss_pred ------------------------------------------------cCCCccceecchheeehHH--------HHHHH
Confidence 2333445778899999998 88888
Q ss_pred HHHhhcceEecchhhHHHHHHHhcCCCeeeeccc-cCCceeeEEEECCCCccc-cCcHHHHHHHHHHHhhcCCccccccC
Q psy15223 850 ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQR-HWGVPIAFFIHKKSGKLH-PKTLELIELIAKKIELNGIEIWQNLD 927 (2492)
Q Consensus 850 ~~~i~~v~~~P~~~~~rl~~~l~~~~DWcISRqr-~WGvpIP~~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~~w~~~~ 927 (2492)
.+.++...|.|+........+.++++|||+||++ +||+++|. ..+... +........+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------ 227 (350)
T d1pfva2 164 QAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN----APGKYFYVWLDAPIGYMGSFK------------ 227 (350)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT----CTTEEECHHHHHHHHHHHHHH------------
T ss_pred HHHhhcCCCchhhHHHHHHHhhccCCccccccccccCCccccC----CCCcccccccccccchhhhhh------------
Confidence 8888877776655555556666789999999999 55777662 111111 00000000000000
Q ss_pred chhhcCCCccCceecCCccccccccccccchhcccCccccCCcCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEE
Q psy15223 928 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLT 1007 (2492)
Q Consensus 928 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~ 1007 (2492)
...+....+.||++.... .....++++.|+|++++|....+.++.+. +..|+.++++
T Consensus 228 -----------~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~G~D~~~~h~~~~~~~~~a~-~~~~~~~~~~ 284 (350)
T d1pfva2 228 -----------NLCDKRGDSVSFDEYWKK-----------DSTAELYHFIGKDIVYFHSLFWPAMLEGS-NFRKPSNLFV 284 (350)
T ss_dssp -----------HHHHHHTCSSHHHHHHBT-----------TCCSEEEEEEEGGGHHHHHTHHHHHHHHT-TBCCCSEEEE
T ss_pred -----------ccccccccchhhhhcccc-----------CCCcceeeccchhhHHHHHhhHHHHhhhc-CCCccceEEe
Confidence 000111223333332111 11134579999999998888877776665 5668889999
Q ss_pred eeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-c-CcccccccCHHHHHHHH
Q psy15223 1008 HGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-T-DYSKDLSISNEILNRVV 1065 (2492)
Q Consensus 1008 hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~-~~~~d~~fs~~~l~~~~ 1065 (2492)
|||++ .+|+|||||+||+|+|.|++++||+|+|||||++ . ...+|++|+++.|.+..
T Consensus 285 ~g~l~-~~G~KMSKS~GN~i~~~dll~~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~ 343 (350)
T d1pfva2 285 HGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRV 343 (350)
T ss_dssp ECCEE-ETTBSCCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHH
T ss_pred cccEE-ECCeEccCcCCCCCCHHHHHHHCCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHH
Confidence 99987 7899999999999999999999999999999996 3 44579999998886553
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-45 Score=468.12 Aligned_cols=338 Identities=21% Similarity=0.247 Sum_probs=262.9
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15223 1600 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAY 1679 (2492)
Q Consensus 1600 ~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~ 1679 (2492)
++|+|+.|||||||.|||||++++++.|+++||+||+||+|.|++|||+||+||+.+|.+. ++++++ ++.
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~---g~~~~~-------~~~ 71 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---GITPEQ-------MIG 71 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH---TSCHHH-------HHH
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHc---CCCHHH-------HHH
Confidence 6899999999999999999999999999999999999999999999999999999999988 889887 677
Q ss_pred HHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceEE
Q psy15223 1680 EKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSIY 1759 (2492)
Q Consensus 1680 ~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~y 1759 (2492)
++...+.++++.||+ ||+..+.|.+|.|.+.++++|.+|+++|++|++..+++|||.|+|+|+|.++.
T Consensus 72 ~~~~~~~~~~~~l~i--~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~---------- 139 (350)
T d1pfva2 72 EMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVV---------- 139 (350)
T ss_dssp HHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTT----------
T ss_pred hHHHHHHHHHHHcCC--CcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCceec----------
Confidence 888999999999998 88999999999999999999999999999999999999999999888663221
Q ss_pred EEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcCC
Q psy15223 1760 VGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFGF 1839 (2492)
Q Consensus 1760 v~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~~ 1839 (2492)
T Consensus 140 -------------------------------------------------------------------------------- 139 (350)
T d1pfva2 140 -------------------------------------------------------------------------------- 139 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccCC
Q psy15223 1840 KGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVMD 1919 (2492)
Q Consensus 1840 ~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd~ 1919 (2492)
T Consensus 140 -------------------------------------------------------------------------------- 139 (350)
T d1pfva2 140 -------------------------------------------------------------------------------- 139 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHHH
Q psy15223 1920 DGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRESA 1999 (2492)
Q Consensus 1920 ~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~~ 1999 (2492)
||.+++.+.++|||+++++ +++.+
T Consensus 140 ------------------------------------------------~g~~~~~~~~~~~f~~l~~--------~~~~l 163 (350)
T d1pfva2 140 ------------------------------------------------SGATPVMRDSEHFFFDLPS--------FSEML 163 (350)
T ss_dssp ------------------------------------------------TCCCCEEEEEEEEEECGGG--------GHHHH
T ss_pred ------------------------------------------------cCCCccceecchheeehHH--------HHHHH
Confidence 2333445678899999998 88888
Q ss_pred HHhhhcceEecccchhHHHHhhhCCCCccccccc-CCCceeeEEEECCCCccc-CCcHHHHHHHHHHHhhcCcccccccc
Q psy15223 2000 ITAINKIKFFPSWGKDRLKSMILNRPDWTISRQR-HWGVPIAFFIHKKSGKLH-PKTLELIELIAKKIELNGIEIWQNLD 2077 (2492)
Q Consensus 2000 ~~~~~~v~~~P~~~~~~~~~~l~~~~DW~ISRqr-~WG~pIP~~~~~~~~~~~-~~~~~~~~~i~~~~~~~g~~~w~~~~ 2077 (2492)
.+.++...+.|+........+.++++|||+||++ +||.++|. ..+... .........+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------ 227 (350)
T d1pfva2 164 QAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN----APGKYFYVWLDAPIGYMGSFK------------ 227 (350)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT----CTTEEECHHHHHHHHHHHHHH------------
T ss_pred HHHhhcCCCchhhHHHHHHHhhccCCccccccccccCCccccC----CCCcccccccccccchhhhhh------------
Confidence 8888877765555555555666789999999999 55777762 111110 00000000000000
Q ss_pred hhhhcCCCccCceecccccccccccCcchhhhccCCccccCCc-CceeeecccchhhhhHHHHHHHHHHhcCCccccEEE
Q psy15223 2078 IKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKKQLIF-PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALL 2156 (2492)
Q Consensus 2078 ~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~~~~~-P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~ 2156 (2492)
...+....+.||++.+. ... ..+++++|+|++++|....+..+.+. +..|+.+++
T Consensus 228 -----------~~~~~~~~~~~~~~~~~------------~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~-~~~~~~~~~ 283 (350)
T d1pfva2 228 -----------NLCDKRGDSVSFDEYWK------------KDSTAELYHFIGKDIVYFHSLFWPAMLEGS-NFRKPSNLF 283 (350)
T ss_dssp -----------HHHHHHTCSSHHHHHHB------------TTCCSEEEEEEEGGGHHHHHTHHHHHHHHT-TBCCCSEEE
T ss_pred -----------ccccccccchhhhhccc------------cCCCcceeeccchhhHHHHHhhHHHHhhhc-CCCccceEE
Confidence 00011122333332211 111 23479999999998887777776665 566888999
Q ss_pred EeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cC-CCCcccccHHHHHHHHH
Q psy15223 2157 THGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TD-YSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2157 ~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~-~~~d~~fs~~~l~~~~~ 2216 (2492)
+|||++ .+|+|||||+||+|+|.|++++||+|+|||||++ .+ ..+|++|+++.+.+..+
T Consensus 284 ~~g~l~-~~G~KMSKS~GN~i~~~dll~~~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N 344 (350)
T d1pfva2 284 VHGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 344 (350)
T ss_dssp EECCEE-ETTBSCCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred ecccEE-ECCeEccCcCCCCCCHHHHHHHCCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHH
Confidence 999987 7899999999999999999999999999999996 34 46799999998866543
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2e-44 Score=436.86 Aligned_cols=265 Identities=31% Similarity=0.556 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhh
Q psy15223 1068 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 1147 (2492)
Q Consensus 1068 ~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~ 1147 (2492)
||||||++||+++|+++|+|..+.++..+++.+|+|||++|+++.+++.++|++|+|++|++.|++|++++||+||++++
T Consensus 1 YRKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~ 80 (273)
T d1ffya1 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG 80 (273)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred CchHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhc
Confidence 78999999999999999998877778888999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHH
Q psy15223 1148 KDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYK 1227 (2492)
Q Consensus 1148 Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~ 1227 (2492)
|||||++..++..|+++|++|+++|..++++|||||||+|||+|+++++. ..+|+|...||+.+ +.+..+.+.
T Consensus 81 Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~~-----~~~sv~~~~~p~~~--~~~~~l~~~ 153 (273)
T d1ffya1 81 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-----KEESVHLADMPKVV--EVDQALLDK 153 (273)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-----SSSSGGGSCCCCCC--CCCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccchhhhccccccc--ccCHhHHHH
Confidence 99999999999999999999999999999999999999999999999753 35799999999864 445667889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCch-hHHHHHHhHHHHHHhhhccceEEeecCCC-----CceEEE
Q psy15223 1228 YMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL-DFEILNEFGEELKFFLLTSSVSLFQIKNL-----SEECII 1301 (2492)
Q Consensus 1228 ~~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~-~~~~l~~~~~~L~~l~~vs~v~i~~~~~~-----~~~~v~ 1301 (2492)
|+.++++|..++++++.+|+++.|++++++.|.|..++. ....+....++|.++++||+|++.+..+. .+.+|.
T Consensus 154 ~~~~~~ir~~v~~~ie~~R~~~~I~~sle~~v~i~~~~~~~~~~~l~~~~~l~~~~~vS~v~i~~~~~~~~~~~~~~~I~ 233 (273)
T d1ffya1 154 WRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGCSCHHHHTTSSEEEECSCCCTTSEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccceeEEeccHHHHHHHHHhhhhhhhhhhccccccccccccccccccCCceEE
Confidence 999999999999999999999999999999999987643 22333334467999999999999765432 347899
Q ss_pred EEecCCCCCccccccccccCCCCCCCCcchhhhhhccC
Q psy15223 1302 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFE 1339 (2492)
Q Consensus 1302 v~~~~~~kC~RCw~~~~~v~~~~~~~~LC~RC~~~v~~ 1339 (2492)
|.++.|.||||||+|+.++|.+.++++||+||..|+.+
T Consensus 234 v~~a~g~KC~RCW~~~~~v~~~~~~~~LC~RC~~vi~~ 271 (273)
T d1ffya1 234 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKS 271 (273)
T ss_dssp EEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHT
T ss_pred EEeCCCCcCcCCCCCCCCcCCCCCCCCcCHhHHHHHHH
Confidence 99999999999999999999888889999999999853
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.9e-43 Score=425.39 Aligned_cols=266 Identities=31% Similarity=0.552 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhh
Q psy15223 2218 YRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDIL 2297 (2492)
Q Consensus 2218 ~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~ 2297 (2492)
||||||++||+++|+++|+|..+.++..+++.+|+|||++++++.++++++|++|+|++|++.+++|++++||+||++++
T Consensus 1 YRKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~ 80 (273)
T d1ffya1 1 YRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG 80 (273)
T ss_dssp HHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred CchHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhc
Confidence 68999999999999999998877777788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHH
Q psy15223 2298 KDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYK 2377 (2492)
Q Consensus 2298 K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~ 2377 (2492)
|+|+|++..++..|++++++|++++..++++|||||||+|||+|+++++. ..++++...||+.+ +.++.+.+.
T Consensus 81 Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~~-----~~~sv~~~~~p~~~--~~~~~l~~~ 153 (273)
T d1ffya1 81 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV-----KEESVHLADMPKVV--EVDQALLDK 153 (273)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC-----SSSSGGGSCCCCCC--CCCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccchhhhccccccc--ccCHhHHHH
Confidence 99999999899999999999999999999999999999999999999764 35789999999864 456778889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChh-hHHHHHHhHHHHHHhhhcccEEEeecCCC-----CceEEE
Q psy15223 2378 YMILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKL-DFEILNEFGEELKFFLLTSSVSLFQIKNL-----SEECII 2451 (2492)
Q Consensus 2378 ~~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~-~~~~l~~~~~~L~~l~~vs~v~i~~~~~~-----~~~~v~ 2451 (2492)
|+.++++|..++++++.+|+++.|+.++++.|.|..++. ....+....++|.++++||+|++..+... ++.+|.
T Consensus 154 ~~~~~~ir~~v~~~ie~~R~~~~I~~sle~~v~i~~~~~~~~~~~l~~~~~l~~~~~vS~v~i~~~~~~~~~~~~~~~I~ 233 (273)
T d1ffya1 154 WRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIV 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGCSCHHHHTTSSEEEECSCCCTTSEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccceeEEeccHHHHHHHHHhhhhhhhhhhccccccccccccccccccCCceEE
Confidence 999999999999999999999999999999999987543 22223334467999999999999876432 367899
Q ss_pred EEeCCCCCCcccceEecCCCCCCCCCCCChhhHHhhhcc
Q psy15223 2452 IKPSIYKKCNRCWHYQADVGERDDYPDLCNRCFNNLFAE 2490 (2492)
Q Consensus 2452 v~~~~~~kC~RCw~~~~~~~~~~~~~~lC~rC~~~~~~~ 2490 (2492)
|.++++.||||||+|+.+++.++++++||+||.+||++.
T Consensus 234 v~~a~g~KC~RCW~~~~~v~~~~~~~~LC~RC~~vi~~l 272 (273)
T d1ffya1 234 IEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKSL 272 (273)
T ss_dssp EEECSSEECTTTCCEESCCEEETTEEEECHHHHHHHHTT
T ss_pred EEeCCCCcCcCCCCCCCCcCCCCCCCCcCHhHHHHHHHh
Confidence 999999999999999999887778889999999999864
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.4e-41 Score=423.29 Aligned_cols=336 Identities=22% Similarity=0.366 Sum_probs=254.9
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHH
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 528 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a 528 (2492)
+++|+|+.|||||||+|||||++++++.|+++||.||+||+|.|++|||+||+||+.+|.+. +.++++ ++
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~~-------~~ 71 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKA-------FV 71 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHH-------HH
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHc---CCCHHH-------hh
Confidence 46899999999999999999999999999999999999999999999999999999999987 788877 77
Q ss_pred HHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCcccccCCCCCcccccccccccceeccEE
Q psy15223 529 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 608 (2492)
Q Consensus 529 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~pv~w~p~~~taLae~Evey~~~~~~s~ 608 (2492)
..++..+++.++.+|+. +++.+.|..+.+...++.++.+++++|++|++..+++||++|++++++.++....
T Consensus 72 ~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 143 (348)
T d2d5ba2 72 DRVSGRFKRAWDLLGIA--YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGL------ 143 (348)
T ss_dssp HHHHHHHHHHHHHTTCC--CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTB------
T ss_pred hhHHHHHHHHHHhcCcc--ccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccccc------
Confidence 88889999999999995 4567889999999999999999999999999999999999999988776654110
Q ss_pred EEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHHcC
Q psy15223 609 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 688 (2492)
Q Consensus 609 yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 688 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (348)
T d2d5ba2 144 -------------------------------------------------------------------------------- 143 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccccC
Q psy15223 689 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 768 (2492)
Q Consensus 689 ~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~vd 768 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (348)
T d2d5ba2 144 -------------------------------------------------------------------------------- 143 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 769 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 848 (2492)
Q Consensus 769 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~t~QWFi~~~~~~~~~~~~~~~~ 848 (2492)
|+.+|..++.....+||.+++. +++.
T Consensus 144 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 169 (348)
T d2d5ba2 144 ----------------------------------------------CPIHGRPVERRKEGNYFFRMEK--------YRPW 169 (348)
T ss_dssp ----------------------------------------------CTTTCSBCEEEEEEEEEECGGG--------GHHH
T ss_pred ----------------------------------------------cccCCCceEEecccccccchHh--------hhhh
Confidence 0001111111111222222222 1111
Q ss_pred HHHHhhc--ceEecchhhHHHHHHHh-cCC---CeeeeccccCCceeeEEEECCCCccccCcHHHHHHHHHHHhhcCCcc
Q psy15223 849 AITAINK--IKFFPSWGKDRLKSMIL-NRP---DWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 922 (2492)
Q Consensus 849 ~~~~i~~--v~~~P~~~~~rl~~~l~-~~~---DWcISRqr~WGvpIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 922 (2492)
..+.... ....+...++....+.. ++. +|+.+++..||++.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~------------------------------- 218 (348)
T d2d5ba2 170 LQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW------------------------------- 218 (348)
T ss_dssp HHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT-------------------------------
T ss_pred HHHhhhccccccccccccccccccccccccccccccccccCCCCccccc-------------------------------
Confidence 1111111 11111112222222222 334 5566778889998884
Q ss_pred ccccCchhhcCCCccCceecCCccccccccccccchhcccCccc--cCCcCeeeeecccccchhhHHHHHHHHHHhcCCC
Q psy15223 923 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSA 1000 (2492)
Q Consensus 923 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--~~~~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~ 1000 (2492)
.+.+++++||+|.+++.+........ ..+++.+.++.|.|+...| ........+..+..
T Consensus 219 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~-~~~~~~~~~~~~~~ 279 (348)
T d2d5ba2 219 ------------------DENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPH-AVFWPTMLKAAGIP 279 (348)
T ss_dssp ------------------EEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHH-HTHHHHHHHHHTCC
T ss_pred ------------------CCcccccchhccchhhhhhhcCCchhhhccccchheeeehhhccchh-hhhhhhhccccccC
Confidence 23578999999999998877654321 4466788999999998633 22333344556788
Q ss_pred CceEEEEeeEEEcCCCccccccCCCccCcchhhhhcChhhHHHHhhc-cCcccccccCHHHHHHHHH
Q psy15223 1001 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 1066 (2492)
Q Consensus 1001 p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l~s-~~~~~d~~fs~~~l~~~~~ 1066 (2492)
||+++++||++++.+|+|||||+||+|+|.|++++||+|+|||||++ .++++|++||++.|++..+
T Consensus 280 ~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p~~~d~dFs~~~~~~~~n 346 (348)
T d2d5ba2 280 MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (348)
T ss_dssp CCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred CCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999997 6889999999998876544
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.4e-40 Score=420.74 Aligned_cols=336 Identities=22% Similarity=0.357 Sum_probs=251.6
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALA 1678 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~ 1678 (2492)
+++|+|+.|||||||.|||||++++++.|+++||.||+||+|.|++|||+||+||+.+|.+. ++++++ ++
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~---g~~~~~-------~~ 71 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA---GEDPKA-------FV 71 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH---TSCHHH-------HH
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHc---CCCHHH-------hh
Confidence 46899999999999999999999999999999999999999999999999999999999988 888876 77
Q ss_pred HHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcccccCCCCCcccccccccceeeecceE
Q psy15223 1679 YEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKPVNWCFDCKSALAEAEIEYKKKYDFSI 1758 (2492)
Q Consensus 1679 ~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~v~wcp~~~t~Lad~Evey~~~~~~~~ 1758 (2492)
..++..++..++.+|+.. +..+.|..+.+...++++|.+++++|++|.+...++||+.|++++++.++....
T Consensus 72 ~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 143 (348)
T d2d5ba2 72 DRVSGRFKRAWDLLGIAY--DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGL------ 143 (348)
T ss_dssp HHHHHHHHHHHHHTTCCC--SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTB------
T ss_pred hhHHHHHHHHHHhcCccc--cceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccccc------
Confidence 888889999999999954 567889999999999999999999999999999999999999988776654110
Q ss_pred EEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHHcC
Q psy15223 1759 YVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKKFG 1838 (2492)
Q Consensus 1759 yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 1838 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (348)
T d2d5ba2 144 -------------------------------------------------------------------------------- 143 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccccC
Q psy15223 1839 FKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINPVM 1918 (2492)
Q Consensus 1839 ~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~vd 1918 (2492)
T Consensus 144 -------------------------------------------------------------------------------- 143 (348)
T d2d5ba2 144 -------------------------------------------------------------------------------- 143 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeeccccccccccCCcEEEeecccceeecCCCCcchhHHHHHH
Q psy15223 1919 DDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSYMHCWRHKTPIIYRTTLQWFINMDKIPKNEKKSLRES 1998 (2492)
Q Consensus 1919 ~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~p~~~R~~~pvi~~~~~QWFi~~~~~~~~~~~~~k~~ 1998 (2492)
|+.+|..++.....+||..++. +++.
T Consensus 144 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 169 (348)
T d2d5ba2 144 ----------------------------------------------CPIHGRPVERRKEGNYFFRMEK--------YRPW 169 (348)
T ss_dssp ----------------------------------------------CTTTCSBCEEEEEEEEEECGGG--------GHHH
T ss_pred ----------------------------------------------cccCCCceEEecccccccchHh--------hhhh
Confidence 0000000111111112222221 1111
Q ss_pred HHHhhhc--ceEecccchhHHHHhh-hCC---CCcccccccCCCceeeEEEECCCCcccCCcHHHHHHHHHHHhhcCccc
Q psy15223 1999 AITAINK--IKFFPSWGKDRLKSMI-LNR---PDWTISRQRHWGVPIAFFIHKKSGKLHPKTLELIELIAKKIELNGIEI 2072 (2492)
Q Consensus 1999 ~~~~~~~--v~~~P~~~~~~~~~~l-~~~---~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 2072 (2492)
..+.... ....+...++....+. .++ .+|..+++..||++.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~------------------------------- 218 (348)
T d2d5ba2 170 LQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW------------------------------- 218 (348)
T ss_dssp HHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT-------------------------------
T ss_pred HHHhhhccccccccccccccccccccccccccccccccccCCCCccccc-------------------------------
Confidence 1111110 0001111111111222 233 35666778889998883
Q ss_pred ccccchhhhcCCCccCceecccccccccccCcchhhhccCCccc--cCCcCceeeecccchhhhhHHHHHHHHHHhcCCc
Q psy15223 2073 WQNLDIKEFLGDDAVNYKKSNDTLDVWFDSGITHQTVIRGSHKK--QLIFPADLYLEGSDQHRGWFHSSLLTSIILNKSA 2150 (2492)
Q Consensus 2073 w~~~~~~~~~~~~~~~~~~~~dvlDvWfdSg~~~~~~~~~~~~~--~~~~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~ 2150 (2492)
.+.+++++||+|.+++.+........ ..+++.+.++.|.|+...|- .......+..+..
T Consensus 219 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~-~~~~~~~~~~~~~ 279 (348)
T d2d5ba2 219 ------------------DENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHA-VFWPTMLKAAGIP 279 (348)
T ss_dssp ------------------EEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHH-THHHHHHHHHTCC
T ss_pred ------------------CCcccccchhccchhhhhhhcCCchhhhccccchheeeehhhccchhh-hhhhhhccccccC
Confidence 13468999999999998877554321 33478899999999986443 2333344556788
Q ss_pred cccEEEEeeeEEcCCCceeeeccCCccCcchhhhccChhHHHHHHhc-cCCCCcccccHHHHHHHHH
Q psy15223 2151 PYKALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVAS-TDYSKDLSISNEILNRVVE 2216 (2492)
Q Consensus 2151 pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s-~~~~~d~~fs~~~l~~~~~ 2216 (2492)
||+++++||++++.+|+|||||+||+|+|.|++++||+|+|||||++ .++++|++||++.|++..|
T Consensus 280 ~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p~~~d~dFs~~~~~~~~n 346 (348)
T d2d5ba2 280 MYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (348)
T ss_dssp CCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred CCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999996 6889999999998876443
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.1e-37 Score=343.98 Aligned_cols=179 Identities=32% Similarity=0.572 Sum_probs=158.9
Q ss_pred cEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHH
Q psy15223 606 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 685 (2492)
Q Consensus 606 ~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 685 (2492)
||+||+|++.+..+. ...+.+++||||||||||||+||||||+++|++++..+ +.++++..+...+..
T Consensus 1 Psi~V~F~l~~~~~~---------~~~~~~l~iwTTtPwTLp~n~avav~p~~~y~~~~~~~---~~~~~~~~~~~~~~~ 68 (179)
T d1udza_ 1 PSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD---EALILEEGLGRKLLG 68 (179)
T ss_dssp CEEEEEEEBSCGGGG---------TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETT---EEEEEEHHHHHHHHC
T ss_pred CeEEEEEEecCCccc---------cCCCceEEEEeCCcchhhcceeeecCCCCcceEEEEee---chhhhhhhccceeee
Confidence 799999999876431 13578999999999999999999999999999999877 788888888777643
Q ss_pred HcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCccc
Q psy15223 686 KFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIIN 765 (2492)
Q Consensus 686 ~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~ 765 (2492)
. ...++.+++|++|.|++|.||+.+ ..++.+||+.+|||+++.|||+||+|||||++||++|++||| ++++
T Consensus 69 ~---~~~i~~~~~G~~l~g~~~~~p~~~---~~~~~~pv~~ad~V~~~~GTG~Vh~aPahg~~D~~~~~k~gl---~i~~ 139 (179)
T d1udza_ 69 E---GTPVLKTFPGKALEGLPYTPPYPQ---ALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLLK 139 (179)
T ss_dssp T---TSCEEEEEEGGGGTTCBBCCSSCC---CCSSCCBEEECTTCCSSSSCSEEEECGGGCHHHHHHHHHTTC---CCCC
T ss_pred e---eeeEEEEEecccceeeEEEeeccc---ccccceeEEeccccCccccCcceeeeccCCHHHHHHHHhcCC---Cccc
Confidence 2 334569999999999999999863 235778999999999999999999999999999999999999 8889
Q ss_pred ccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeee
Q psy15223 766 PVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEM 807 (2492)
Q Consensus 766 ~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~ 807 (2492)
|||++|+|+ .+.|.||++++|++.|++.|+++|.|++.|.
T Consensus 140 ~Vd~~G~~~--~~~~~Gl~v~dA~~~Ii~~L~~~g~L~~~e~ 179 (179)
T d1udza_ 140 TVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGFLFKEES 179 (179)
T ss_dssp CBCTTSBBC--STTCTTCBHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cccCcceec--ccccCCCCHHHhHHHHHHHHHHCCCEEeecC
Confidence 999999998 4689999999999999999999999998763
|
| >d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein HI0303 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=4.1e-37 Score=342.79 Aligned_cols=169 Identities=37% Similarity=0.624 Sum_probs=149.8
Q ss_pred CCCceeeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCC
Q psy15223 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 353 (2492)
Q Consensus 274 ~~~~~i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~ 353 (2492)
+++.+|+|+||+||+++|||+|||||||||++|+|+.|+||+++++.++..+|++||++|+++|||||||+++|+|.++.
T Consensus 2 e~~~~i~l~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~ 81 (174)
T d1nxza2 2 ESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLM 81 (174)
T ss_dssp CCSSCEEEEEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCE
T ss_pred CCCceEEEEEeecCcchHHHHHHHHHhhCcceEEechHhhcccccchhHHHhhHHHHHHHHHHHHHhcCccccccccchh
Confidence 46778999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred chhHHHhhcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhhe
Q psy15223 354 YFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVAL 433 (2492)
Q Consensus 354 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~ 433 (2492)
+|++++........+.+++++...+..+. ....+++.++||||||||++|++.+.+.||++|+||+||||+|||+++++
T Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iiIGPEGGfs~~E~~~~~~~g~~~v~LG~~ILR~ETA~i~al 160 (174)
T d1nxza2 82 KLQDWCAENDGALKLNLHPRAHYSIKTLP-TIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAI 160 (174)
T ss_dssp EHHHHHHCCSSCEEEEECTTCSCBGGGCC-CCCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHH
T ss_pred hHHHHHhhhcchhhhhhhhhhhhhhhhhc-cCCCCcEEEEEcCCcCcCHHHHHHHHHCCCeEeeCCCCcchHHhHHHHHH
Confidence 99999986554444555655544433332 22346799999999999999999999999999999999999999999999
Q ss_pred eeeccccccc
Q psy15223 434 AILNGVWGEI 443 (2492)
Q Consensus 434 ~~v~~ly~~~ 443 (2492)
++++.+|+++
T Consensus 161 s~l~~~~gdl 170 (174)
T d1nxza2 161 SALQICFGDL 170 (174)
T ss_dssp HHHHHHHSST
T ss_pred HHHHHHhccc
Confidence 9999999876
|
| >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=9.3e-37 Score=341.84 Aligned_cols=171 Identities=32% Similarity=0.456 Sum_probs=137.7
Q ss_pred cCCCceeeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccC
Q psy15223 273 IELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPN 352 (2492)
Q Consensus 273 ~~~~~~i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~ 352 (2492)
.|+|.+|+|+||++|+++|||+|||||||||++|+|+.|+||+++++.++..+|.+||++|+++|||||||+++|+|.++
T Consensus 2 rE~p~~i~L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~ 81 (180)
T d1vhka2 2 RELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDV 81 (180)
T ss_dssp CCCSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCC
T ss_pred CCCCcEEEEEEeecCcchHHHHHHHHHhhCcceEEeeecccccccccchhhhhhHHHHHHHHHHHHHhhccccccccccC
Confidence 56788999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred CchhHHHhhcccccEEEe-ccCCccc--ccc----cccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeec
Q psy15223 353 IYFNNWLISKISCARILL-SPRGRKK--LSC----WANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRT 425 (2492)
Q Consensus 353 ~~~~~~l~~~~~~~~~l~-~~~~~~~--~~~----~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~ 425 (2492)
.+|++++......+.+++ ++..... ... .......+++.++||||||||++|++.+.+.||.+++||+||||+
T Consensus 82 ~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~~~v~LG~~ILR~ 161 (180)
T d1vhka2 82 HSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRT 161 (180)
T ss_dssp BCHHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSSCCCT
T ss_pred CCHHHHHHhccccccEEEEecccccccchhHHHHHHhccCCCCeEEEEecCCCCCCHHHHHHHHHCCCEEEECCCCcchH
Confidence 999999986555454444 3332211 111 111234567999999999999999999999999999999999999
Q ss_pred cccchhheeeeccccccc
Q psy15223 426 ETASLVALAILNGVWGEI 443 (2492)
Q Consensus 426 eta~~~~~~~v~~ly~~~ 443 (2492)
|||+++|++++++.++.+
T Consensus 162 ETA~i~als~l~~~~~l~ 179 (180)
T d1vhka2 162 ETAPLYALSAISYQTELL 179 (180)
T ss_dssp TTHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHhc
Confidence 999999999998876654
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.6e-38 Score=361.27 Aligned_cols=191 Identities=31% Similarity=0.554 Sum_probs=172.4
Q ss_pred cceeccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhH
Q psy15223 601 KKKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLV 680 (2492)
Q Consensus 601 ~~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~ 680 (2492)
.|+.|+|+||+|++.+...+ ...+.+++||||||||||||+||||||+.+|++++..+ ..+++++.+.
T Consensus 1 ~D~~s~sv~v~F~i~~~~~~---------~~~~~~l~iwTTtPwTlp~n~alav~p~~~y~~~~~~~---~~~~~~~~~~ 68 (194)
T d1ffya2 1 HDKRSASIYVAFNVKDDKGV---------VDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG---EKYIIAEALS 68 (194)
T ss_dssp EEEEEEEEECCBCCCSSTTG---------GGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTT---TCCCCCHHHH
T ss_pred CCccCCEEEEEEEEcCCCCc---------cCCCCeEEEecCCCchhhhhhheeeCCccccceeeeec---chhhhhhhhh
Confidence 37899999999999875422 12468999999999999999999999999999998866 6778888888
Q ss_pred HHHHHHcCCcCc---EEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcC
Q psy15223 681 KSCLKKFGFKGN---IIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQN 757 (2492)
Q Consensus 681 ~~~~~~~~~~~~---~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~ 757 (2492)
..+......... .+..++|.+|.|+.+.||+. ++.+||+.++||+++.|||+||+|||||++||++|++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~p~~------~~~~pv~~~d~V~~~~GTGiVh~aPahg~~D~~~~~~~~ 142 (194)
T d1ffya2 69 DAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL------DRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYE 142 (194)
T ss_dssp HHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT------CCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSS
T ss_pred hhhhhhhhhcceeeeeecccccccccCcccccccc------ccccceeccceeecccCCcceeeecccCcchHHhHHHcC
Confidence 888776654432 23789999999999999998 889999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCcccccCCCCCCcchhhchHHHHHHHHhcCCeeeeeeecccc
Q psy15223 758 MKDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 812 (2492)
Q Consensus 758 l~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~y 812 (2492)
| +++++||++|+|++++|+|+||++++|++.|++.|+++|.|++.++|.|||
T Consensus 143 l---~~~~~Vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~e~g~l~~~~~~~HsY 194 (194)
T d1ffya2 143 L---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSY 194 (194)
T ss_dssp C---CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEE
T ss_pred C---cccceecccccccCCCCccCCcCHHHhHHHHHHHHHHCCCEecccccCcCC
Confidence 9 788999999999999999999999999999999999999999999999998
|
| >d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein HI0303 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=5.2e-36 Score=333.84 Aligned_cols=166 Identities=35% Similarity=0.580 Sum_probs=147.6
Q ss_pred ccceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCC
Q psy15223 1407 RNFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIY 1486 (2492)
Q Consensus 1407 r~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~ 1486 (2492)
...+++|+||+||+++|||+|||||||||++|+|+.|+||++++..++..++.+||++|+++|||||+|+++|+|.++.+
T Consensus 3 ~~~~i~l~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~~ 82 (174)
T d1nxza2 3 SHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMK 82 (174)
T ss_dssp CSSCEEEEEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEE
T ss_pred CCceEEEEEeecCcchHHHHHHHHHhhCcceEEechHhhcccccchhHHHhhHHHHHHHHHHHHHhcCccccccccchhh
Confidence 34568999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred hhHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhh
Q psy15223 1487 FNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALA 1566 (2492)
Q Consensus 1487 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~ 1566 (2492)
|++++........+++++.+......... ...++++++||||||||++|++.++++||.+|+||+||||+|||+++|++
T Consensus 83 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iiIGPEGGfs~~E~~~~~~~g~~~v~LG~~ILR~ETA~i~als 161 (174)
T d1nxza2 83 LQDWCAENDGALKLNLHPRAHYSIKTLPT-IPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAIS 161 (174)
T ss_dssp HHHHHHCCSSCEEEEECTTCSCBGGGCCC-CCTTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHH
T ss_pred HHHHHhhhcchhhhhhhhhhhhhhhhhcc-CCCCcEEEEEcCCcCcCHHHHHHHHHCCCeEeeCCCCcchHHhHHHHHHH
Confidence 99999876666666677666554443332 34568999999999999999999999999999999999999999999999
Q ss_pred hhccccC
Q psy15223 1567 ILNGELS 1573 (2492)
Q Consensus 1567 ~~~a~l~ 1573 (2492)
.+++-+-
T Consensus 162 ~l~~~~g 168 (174)
T d1nxza2 162 ALQICFG 168 (174)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9876543
|
| >d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.8e-35 Score=330.70 Aligned_cols=177 Identities=33% Similarity=0.590 Sum_probs=155.7
Q ss_pred ceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHH
Q psy15223 1756 FSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLK 1835 (2492)
Q Consensus 1756 ~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~ 1835 (2492)
||+||+|++.+.... ...+.+++||||||||||||+||||||+++|++++..+ +.++.+..+..++..
T Consensus 1 Psi~V~F~l~~~~~~---------~~~~~~l~iwTTtPwTLp~n~avav~p~~~y~~~~~~~---~~~~~~~~~~~~~~~ 68 (179)
T d1udza_ 1 PSVYVRFPLKEPKKL---------GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGD---EALILEEGLGRKLLG 68 (179)
T ss_dssp CEEEEEEEBSCGGGG---------TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETT---EEEEEEHHHHHHHHC
T ss_pred CeEEEEEEecCCccc---------cCCCceEEEEeCCcchhhcceeeecCCCCcceEEEEee---chhhhhhhccceeee
Confidence 799999999876421 12468999999999999999999999999999999875 677777777666543
Q ss_pred HcCCcCceE-EEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcc
Q psy15223 1836 KFGFKGNII-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 1914 (2492)
Q Consensus 1836 ~~~~~~~~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~ 1914 (2492)
+...+ .+++|++|.|.+|.||+.. ..++.+||+.+|||++++|||+||+|||||++||++|++||| +++
T Consensus 69 ----~~~~i~~~~~G~~l~g~~~~~p~~~---~~~~~~pv~~ad~V~~~~GTG~Vh~aPahg~~D~~~~~k~gl---~i~ 138 (179)
T d1udza_ 69 ----EGTPVLKTFPGKALEGLPYTPPYPQ---ALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL---PLL 138 (179)
T ss_dssp ----TTSCEEEEEEGGGGTTCBBCCSSCC---CCSSCCBEEECTTCCSSSSCSEEEECGGGCHHHHHHHHHTTC---CCC
T ss_pred ----eeeeEEEEEecccceeeEEEeeccc---ccccceeEEeccccCccccCcceeeeccCCHHHHHHHHhcCC---Ccc
Confidence 23344 9999999999999999862 236779999999999999999999999999999999999999 999
Q ss_pred cccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceee
Q psy15223 1915 NPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIE 1956 (2492)
Q Consensus 1915 ~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~ 1956 (2492)
++||++|+|+ .+.|.||++++|++.|++.|+++|.|++.+
T Consensus 139 ~~Vd~~G~~~--~~~~~Gl~v~dA~~~Ii~~L~~~g~L~~~e 178 (179)
T d1udza_ 139 KTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGFLFKEE 178 (179)
T ss_dssp CCBCTTSBBC--STTCTTCBHHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccCcceec--ccccCCCCHHHhHHHHHHHHHHCCCEEeec
Confidence 9999999998 468999999999999999999999999876
|
| >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-35 Score=331.36 Aligned_cols=165 Identities=30% Similarity=0.413 Sum_probs=132.8
Q ss_pred cceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCCh
Q psy15223 1408 NFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYF 1487 (2492)
Q Consensus 1408 ~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~ 1487 (2492)
..+++|++|++|+++||++|||||||||++|+|+.|+||+++++.++..++.+||++|+++|||||||+++|+|.++.+|
T Consensus 5 p~~i~L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~l 84 (180)
T d1vhka2 5 PIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSF 84 (180)
T ss_dssp SSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCH
T ss_pred CcEEEEEEeecCcchHHHHHHHHHhhCcceEEeeecccccccccchhhhhhHHHHHHHHHHHHHhhccccccccccCCCH
Confidence 34789999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred hHHHhcccccceEEeccCCcccccc-------cccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeecc
Q psy15223 1488 NNWLISKISCARILLSPRGRKKLSC-------WANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETA 1560 (2492)
Q Consensus 1488 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA 1560 (2492)
++++........+++++........ .......++++++||||||||++|+++|.++||.+++||+||||+|||
T Consensus 85 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~~~v~LG~~ILR~ETA 164 (180)
T d1vhka2 85 QQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETA 164 (180)
T ss_dssp HHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSSCCCTTTH
T ss_pred HHHHHhccccccEEEEecccccccchhHHHHHHhccCCCCeEEEEecCCCCCCHHHHHHHHHCCCEEEECCCCcchHHhH
Confidence 9999876554544444332221111 112234578999999999999999999999999999999999999999
Q ss_pred chhhhhhhcccc
Q psy15223 1561 SLVALAILNGEL 1572 (2492)
Q Consensus 1561 ~~~~~~~~~a~l 1572 (2492)
+++|++++++.+
T Consensus 165 ~i~als~l~~~~ 176 (180)
T d1vhka2 165 PLYALSAISYQT 176 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
|
| >d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein TTHA0657 (TT1575) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-35 Score=323.90 Aligned_cols=161 Identities=29% Similarity=0.407 Sum_probs=138.2
Q ss_pred CCCceeeEEEecCCchhHHHHHHHHHHcCcceEEEeeccceeeecchhHHHHhHHHHHHHHHHHHhhhCCCCcceeccCC
Q psy15223 274 ELPYTITLVQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNI 353 (2492)
Q Consensus 274 ~~~~~i~L~~al~K~~~~d~ii~katELGv~~I~p~~~~rs~~~~~~~~~~~k~~rw~~i~~ea~~Qs~r~~~p~i~~~~ 353 (2492)
|+|.+|+|+||++|+++|||+|||||||||++|+|+.|+||+.+.. ..+|++||++|+++|||||+|+++|+|.++.
T Consensus 2 e~~~~i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~---~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~ 78 (162)
T d1v6za2 2 EVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEM---GEGKLRRLRAVALEAAKQSGRVVVPEVLPPI 78 (162)
T ss_dssp SCSSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCC---CHHHHHHHHHHHHHHHHHTTCSSCCEECCCE
T ss_pred CCCceEEEEEeccCchHHHHHHHHHHhhCcCEEEEEEecccchhhh---chhhhhHHHHHHHHHHHhccccCCCcccccc
Confidence 5678999999999999999999999999999999999999988643 2468999999999999999999999999999
Q ss_pred chhHHHhhcccccEEEeccCCcccccccccCCCCCceEEEeCCCCCCCHHHHHHHHHcCceEeecCcceeeccccchhhe
Q psy15223 354 YFNNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVAL 433 (2492)
Q Consensus 354 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~iGPEGGfs~~E~~~~~~~~~~~vsLg~~ILr~eta~~~~~ 433 (2492)
++++++... ...+++.+....+.... ...+++.++||||||||++|++.++++|+++|+||+||||+|||+++|+
T Consensus 79 ~l~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~i~i~IGPEGGfs~~Ei~~l~~~g~~~v~LG~~ILR~ETA~i~al 153 (162)
T d1v6za2 79 PLKAVPQVA---QGLVAHVGATARVREVL--DPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALL 153 (162)
T ss_dssp EGGGCCCCS---SEEEECTTCCCCHHHHC--CTTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHH
T ss_pred CHHHHhhhc---chhhccccccccchhhh--cccCcceEEEeccCCCCHHHHHHHHHCCCEEEECCCCccHHHhHHHHHH
Confidence 999987532 23455554443332222 2346799999999999999999999999999999999999999999999
Q ss_pred eeecccccc
Q psy15223 434 AILNGVWGE 442 (2492)
Q Consensus 434 ~~v~~ly~~ 442 (2492)
++++..+++
T Consensus 154 s~~~~~~Gr 162 (162)
T d1v6za2 154 ALCTAGEGR 162 (162)
T ss_dssp HHHTGGGTC
T ss_pred HHHHHHhCc
Confidence 999987763
|
| >d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-36 Score=346.58 Aligned_cols=190 Identities=32% Similarity=0.557 Sum_probs=169.6
Q ss_pred eeecceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHH
Q psy15223 1752 KKYDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVK 1831 (2492)
Q Consensus 1752 ~~~~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~ 1831 (2492)
|+.|+++||+|++.++.... ..+.+++||||||||||||+||||||+.+|++++..+ ..+++++.+..
T Consensus 2 D~~s~sv~v~F~i~~~~~~~---------~~~~~l~iwTTtPwTlp~n~alav~p~~~y~~~~~~~---~~~~~~~~~~~ 69 (194)
T d1ffya2 2 DKRSASIYVAFNVKDDKGVV---------DADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG---EKYIIAEALSD 69 (194)
T ss_dssp EEEEEEEECCBCCCSSTTGG---------GTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTT---TCCCCCHHHHH
T ss_pred CccCCEEEEEEEEcCCCCcc---------CCCCeEEEecCCCchhhhhhheeeCCccccceeeeec---chhhhhhhhhh
Confidence 67899999999998754221 2467999999999999999999999999999998765 45677777777
Q ss_pred HHHHHcCCcCc--eE-EEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCC
Q psy15223 1832 SCLKKFGFKGN--II-GICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNM 1908 (2492)
Q Consensus 1832 ~~~~~~~~~~~--~v-~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l 1908 (2492)
.+......... .+ .+++|.+|.|+.+.||+. ++.+||+.++||++++|||+||+|||||++||++|+++||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~p~~------~~~~pv~~~d~V~~~~GTGiVh~aPahg~~D~~~~~~~~l 143 (194)
T d1ffya2 70 AVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL------DRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYEL 143 (194)
T ss_dssp HHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTT------CCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSC
T ss_pred hhhhhhhhcceeeeeecccccccccCcccccccc------ccccceeccceeecccCCcceeeecccCcchHHhHHHcCC
Confidence 76665554332 22 889999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCccccCCCCCCCccHHhhhHHHHHHHHhcCCcceeeeecccc
Q psy15223 1909 KDSDIINPVMDDGNFISTLPLFGGMSIWKASKLICSYLKKSKTLFNIEMFEHSY 1962 (2492)
Q Consensus 1909 ~~~~~~~~vd~~G~~~~~~~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~~h~~ 1962 (2492)
+++++||++|+|++++++|+||++++|++.|++.|+++|.|++.++|.|||
T Consensus 144 ---~~~~~Vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~e~g~l~~~~~~~HsY 194 (194)
T d1ffya2 144 ---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSY 194 (194)
T ss_dssp ---CCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEE
T ss_pred ---cccceecccccccCCCCccCCcCHHHhHHHHHHHHHHCCCEecccccCcCC
Confidence 899999999999999999999999999999999999999999999999998
|
| >d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein TTHA0657 (TT1575) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.8e-34 Score=315.16 Aligned_cols=157 Identities=28% Similarity=0.382 Sum_probs=135.0
Q ss_pred cceeEEEEecCCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHHHHHHHHhhhCCCCCCeeccCCCh
Q psy15223 1408 NFVKNKIQALPENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKNIIISATEQSGRNILPVLAPNIYF 1487 (2492)
Q Consensus 1408 ~~~~~l~~a~~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~i~~~a~~Q~~r~~~p~i~~~~~~ 1487 (2492)
..+++|++|+||+++||++|||||||||++|+|+.|+||+.+..+ .+|.+||++|+++|||||+|+++|+|..|.++
T Consensus 4 ~~~i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~---~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l 80 (162)
T d1v6za2 4 GVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMG---EGKLRRLRAVALEAAKQSGRVVVPEVLPPIPL 80 (162)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCC---HHHHHHHHHHHHHHHHHTTCSSCCEECCCEEG
T ss_pred CceEEEEEeccCchHHHHHHHHHHhhCcCEEEEEEecccchhhhc---hhhhhHHHHHHHHHHHhccccCCCccccccCH
Confidence 356899999999999999999999999999999999999876443 36789999999999999999999999999999
Q ss_pred hHHHhcccccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHHHHHHcCCeEeecCCccceeeccchhhhhh
Q psy15223 1488 NNWLISKISCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEENLAYECGVIILSLGKRILRTETASLVALAI 1567 (2492)
Q Consensus 1488 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~~~~~~gf~~vsLG~rILR~ETA~~~~~~~ 1567 (2492)
++++... ...+++.......... ....+++.++||||||||++|+++|+++||.+|+||+||||+|||+++|+++
T Consensus 81 ~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~i~i~IGPEGGfs~~Ei~~l~~~g~~~v~LG~~ILR~ETA~i~als~ 155 (162)
T d1v6za2 81 KAVPQVA---QGLVAHVGATARVREV--LDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLAL 155 (162)
T ss_dssp GGCCCCS---SEEEECTTCCCCHHHH--CCTTSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSSCCCHHHHHHHHHHH
T ss_pred HHHhhhc---chhhccccccccchhh--hcccCcceEEEeccCCCCHHHHHHHHHCCCEEEECCCCccHHHhHHHHHHHH
Confidence 9986542 3345555544433222 2345689999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q psy15223 1568 LNGEL 1572 (2492)
Q Consensus 1568 ~~a~l 1572 (2492)
+++.+
T Consensus 156 ~~~~~ 160 (162)
T d1v6za2 156 CTAGE 160 (162)
T ss_dssp HTGGG
T ss_pred HHHHh
Confidence 98754
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=9.5e-33 Score=293.12 Aligned_cols=139 Identities=22% Similarity=0.288 Sum_probs=127.7
Q ss_pred EEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHHHHH
Q psy15223 607 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 686 (2492)
Q Consensus 607 s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 686 (2492)
.+||+|++.+ +.+++||||||||||||+||||||++.|
T Consensus 3 l~yvkf~~~~----------------~~~i~i~TTrP~Tl~g~~avav~P~d~~-------------------------- 40 (143)
T d1wkaa1 3 LYTLRYEVEG----------------GGFIEIATVRPETVFADQAIAVHPEDER-------------------------- 40 (143)
T ss_dssp EEEEEEEBTT----------------SCEEEEEESCGGGGGGCCEEEECTTCTT--------------------------
T ss_pred EEEEEEEeCC----------------CCEEEEEECCcchhcCceEEEEeccccc--------------------------
Confidence 5789999854 3489999999999999999999999652
Q ss_pred cCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCcccc
Q psy15223 687 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 766 (2492)
Q Consensus 687 ~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~~~~ 766 (2492)
+..|.|+.+.||+. ++++||+.++||+++.|||+||+|||||++||++|++||| +++++
T Consensus 41 ------------~~~l~g~~~~~p~~------~~~vpi~~~~~V~~~~GTG~V~~aPaHd~~D~~~~~k~~L---~~~~~ 99 (143)
T d1wkaa1 41 ------------YRHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL---KPVSV 99 (143)
T ss_dssp ------------TGGGTTCEEECTTS------SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCS
T ss_pred ------------cccccccceeeccc------ceeeceeecccccccCCCCeEEEeccCChHHHHHHHhhcc---ccccc
Confidence 24789999999999 8999999999999999999999999999999999999999 88899
Q ss_pred cCCCCcccccC--CCCCCcchhhchHHHHHHHHhcCCeeeeeee
Q psy15223 767 VMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMF 808 (2492)
Q Consensus 767 vd~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 808 (2492)
||++|+|+++. ++|.||++++||+.|++.|+++|+|++.++|
T Consensus 100 i~~~G~~~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~gll~k~e~y 143 (143)
T d1wkaa1 100 INLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 143 (143)
T ss_dssp BCTTSBBCSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccccceEeeecchHhhCCCcHHHHHHHHHHHHHhCCCEEeeecC
Confidence 99999999864 4799999999999999999999999998865
|
| >d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=6.1e-32 Score=286.86 Aligned_cols=139 Identities=22% Similarity=0.288 Sum_probs=127.3
Q ss_pred eEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHHHH
Q psy15223 1757 SIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCLKK 1836 (2492)
Q Consensus 1757 ~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~~~ 1836 (2492)
.+||+|++.+ +.+++||||||||||||+||||||+++|
T Consensus 3 l~yvkf~~~~----------------~~~i~i~TTrP~Tl~g~~avav~P~d~~-------------------------- 40 (143)
T d1wkaa1 3 LYTLRYEVEG----------------GGFIEIATVRPETVFADQAIAVHPEDER-------------------------- 40 (143)
T ss_dssp EEEEEEEBTT----------------SCEEEEEESCGGGGGGCCEEEECTTCTT--------------------------
T ss_pred EEEEEEEeCC----------------CCEEEEEECCcchhcCceEEEEeccccc--------------------------
Confidence 4689999843 3589999999999999999999999642
Q ss_pred cCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcccc
Q psy15223 1837 FGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDIINP 1916 (2492)
Q Consensus 1837 ~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~~~ 1916 (2492)
+..|.|+.+.||++ ++++||+.++||++++|||+||+|||||++||++|++||| +++++
T Consensus 41 ------------~~~l~g~~~~~p~~------~~~vpi~~~~~V~~~~GTG~V~~aPaHd~~D~~~~~k~~L---~~~~~ 99 (143)
T d1wkaa1 41 ------------YRHLLGKRARIPLT------EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGL---KPVSV 99 (143)
T ss_dssp ------------TGGGTTCEEECTTS------SCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCCCS
T ss_pred ------------cccccccceeeccc------ceeeceeecccccccCCCCeEEEeccCChHHHHHHHhhcc---ccccc
Confidence 23689999999999 9999999999999999999999999999999999999999 99999
Q ss_pred cCCCCccccCC--CCCCCccHHhhhHHHHHHHHhcCCcceeeee
Q psy15223 1917 VMDDGNFISTL--PLFGGMSIWKASKLICSYLKKSKTLFNIEMF 1958 (2492)
Q Consensus 1917 vd~~G~~~~~~--~~~~G~~v~~a~~~i~~~L~~~g~l~~~~~~ 1958 (2492)
+|++|+|+++. +.|.||++++||+.|++.|+++|+|++.++|
T Consensus 100 i~~~G~~~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~gll~k~e~y 143 (143)
T d1wkaa1 100 INLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 143 (143)
T ss_dssp BCTTSBBCSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccccceEeeecchHhhCCCcHHHHHHHHHHHHHhCCCEEeeecC
Confidence 99999999864 4799999999999999999999999998864
|
| >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1e-32 Score=301.83 Aligned_cols=151 Identities=45% Similarity=0.776 Sum_probs=144.0
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcC
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTL 123 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~ 123 (2492)
-+|+.||+.|+++|+++...|++|||||||+||+||++|+|.+.+..||+.|||++||+++....++.+|. ++++|||+
T Consensus 5 ~~~e~~M~~Ai~~A~~a~~~~~~pvGaViv~~g~Iia~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~-~~~lytT~ 83 (156)
T d1z3aa1 5 FSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLI-DATLYVTL 83 (156)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TCEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCCCEEEEEEECCeEEEEeeccccccCcchhhHHHHhHHHHHhhccccccc-Cceeeecc
Confidence 36778999999999999999999999999999999999999999999999999999999999999888886 89999999
Q ss_pred CChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCcc
Q psy15223 124 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFV 195 (2492)
Q Consensus 124 EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~~ 195 (2492)
|||+||++||+|+||+|||||+.+|+.++.|+++..+.+++++++++|++|++++||.+|++.||+++|+.+
T Consensus 84 ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~l~~~~~~~~ieV~~gvl~ee~~~ll~~Ff~~~r~~~ 155 (156)
T d1z3aa1 84 EPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEI 155 (156)
T ss_dssp CCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTC
T ss_pred ccccchhhHHHHhCCceEEEEeecCCCcccCcHHHHHHhCCCCCCcEEEeCcCHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999877655
|
| >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=1.2e-32 Score=298.23 Aligned_cols=149 Identities=36% Similarity=0.554 Sum_probs=141.1
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|+.||+.|+++|+++...|+.|||||||++|+||+.|+|....+.||+.|||++||++|+++++...|. |+|||||+|
T Consensus 2 ~~e~fM~~Ai~~A~~a~~~~~~pVGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~-~~tlY~TlE 80 (151)
T d1wwra1 2 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLE-GCELYVTLE 80 (151)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCT-TEEEEESSC
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCEEEEEEECCeeeeeecccccccCcchhhHHHHHHHHHHHhhCccccC-CcEeeeccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999888886 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccCcc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRNFV 195 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~~~ 195 (2492)
||+||++||+|+||+|||||+.||+.++.|++++++...+++|++.|.+|++ +||.+|++.||+++|+.+
T Consensus 81 PC~mC~~ai~~~~I~rVvyg~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-ee~~~Ll~~Ff~~~R~~~ 150 (151)
T d1wwra1 81 PCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL-EEASELLSEFFKKLRNNI 150 (151)
T ss_dssp CBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEECCC-HHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHhcCCeEEEEeecCCCCccccHHHHHhhhhcCCCCEEEeecH-HHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999888 589999999999988754
|
| >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.1e-31 Score=292.10 Aligned_cols=148 Identities=41% Similarity=0.717 Sum_probs=141.7
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
.|..||+.|+++|+++...|+.|||||||++|++|+.|+|...+..||+.|||++|++++.+.++..++. ++++|||+|
T Consensus 3 ~D~~fM~~Ai~~A~~a~~~g~~PVGaViV~~~~ii~~g~~~~~~~~~~~~HAe~~a~~~~~~~~~~~~~~-~~~ly~t~e 81 (151)
T d2b3ja1 3 NDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLE-GCTLYVTLE 81 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCT-TEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhcccCCCCEEEEEEecccchhhhhccccccCcchhhhhhhhhHHHHHHhCCCCCC-CCeEEEecc
Confidence 4778999999999999989999999999999999999999999999999999999999999999888876 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
||+||++||+|+||+|||||..||+.++.|+++.++...++++++.|++|+|++||.+|++.||+++|+
T Consensus 82 PC~mC~~aii~~gI~~Vv~g~~d~~~~~~g~~~~~l~~~~i~~~~~v~~Gvl~~e~~~L~~~Ff~~~r~ 150 (151)
T d2b3ja1 82 PCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRA 150 (151)
T ss_dssp CCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHH
T ss_pred chhhhhchhhhhccceEEEEeecCCCCccCcchhhhhhcCCCCCCEEEcCcCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999988764
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.2e-30 Score=296.85 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=139.3
Q ss_pred eccEEEEEeecCCchhhhhhhccCCCCCCCeEEEEEecCCcccccccEEEEcCCCCEEEEEecCCCCceeeeeHHhHHHH
Q psy15223 604 YDFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSC 683 (2492)
Q Consensus 604 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~~~~~iwTTtPwTl~~n~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~ 683 (2492)
+|..++|+|++.+ .+.+++||||||||||||+||||||+++|+.+...+ .....+..+.+..
T Consensus 1 rS~g~~V~F~v~~---------------~~~~l~iwTTtPwTlpgn~avav~p~~~y~~~~~~~---~~~~~~~~~~~~~ 62 (192)
T d1h3na2 1 RSEGAEILFPVEG---------------KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAP---EKREEVLAYVEAA 62 (192)
T ss_dssp EEEEEEEEEEBTT---------------SSCEEEEEESCGGGGGGCCEEEECTTSHHHHHTSCG---GGHHHHHHHHHHH
T ss_pred CCceEEEEEEecC---------------CCcEEEEEeCCcchhhhccEEEECCchhHHHHHhhc---cchhHHHHHHHHh
Confidence 3667999999854 357899999999999999999999999998765433 3333444444444
Q ss_pred HHHcCCcCcEEEEEecccccCCEEecCCcccccCCCceecEEecCCcccCCCCccEEecCCCCHHHHHHHHHcCCCCCCc
Q psy15223 684 LKKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDI 763 (2492)
Q Consensus 684 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~pii~~~~V~~~~GTG~Vh~aPahg~~D~~~~~~~~l~~~~~ 763 (2492)
...............+..+.+..+.||+. ++.+||+.++||+.+.|||+||+|||||++||.+|++||| ++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~~~~~~p~~------~~~vpv~~a~~V~~d~GTG~Vh~aPahg~~D~~~~~k~~l---p~ 133 (192)
T d1h3na2 63 KRKTEIERQAEGREKTGVFLGAYALNPAT------GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL---PI 133 (192)
T ss_dssp HHSCHHHHTCSSCCCCCEEEEEEEECTTT------CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CC
T ss_pred hhccchhhhhhhheeeccccceeeecCCC------CCEEEEEeecccccccccceEEEecccCcccceeeccccc---cc
Confidence 33322222222223334677899999999 8899999999999999999999999999999999999999 78
Q ss_pred ccccCCCCcccccC--------------CCCCCcchhhchHHHHHHHHhcCCeee
Q psy15223 764 INPVMDDGNFISTL--------------PLFGGMSIWKASKLICSYLKKSKTLFN 804 (2492)
Q Consensus 764 ~~~vd~~G~~~~~~--------------~~~~G~~v~~a~~~i~~~L~~~g~l~~ 804 (2492)
+++||++|.++.+. +.|.||++++|++.|++.|+++|+...
T Consensus 134 ~~vi~~~g~~~~~~~~~~~~~~g~~~ns~~~~Gl~v~~A~~~Ii~~L~~~glg~~ 188 (192)
T d1h3na2 134 KKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG 188 (192)
T ss_dssp CCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE
T ss_pred cccccccccccccccccccccCceEecccccCCCcHHHHHHHHHHHHHHCCCccc
Confidence 89999999877653 569999999999999999999997543
|
| >d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ValRS/IleRS/LeuRS editing domain superfamily: ValRS/IleRS/LeuRS editing domain family: ValRS/IleRS/LeuRS editing domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=9.4e-30 Score=289.29 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=136.7
Q ss_pred cceEEEEEeccCchhhHhhhccCCCCCCccEEEEeecCcchhccccEEEEcCCCCEEEEEecCCCCceehhhHHhHHHHH
Q psy15223 1755 DFSIYVGFSFSEPEKIKSIFNLKNLPSGKGYIVIWTSTPWTIPANQALHVHPEFDYALVHIKNDPPLLLILAFNLVKSCL 1834 (2492)
Q Consensus 1755 ~~~~yv~f~~~~~~~~~~~~~~~~~~~~~~~l~i~TT~P~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~~i~a~~~~~~~~ 1834 (2492)
|.+++|+|++.+ ++.+++||||||||||||+||||||+++|+.+...+ .....+....+...
T Consensus 2 S~g~~V~F~v~~---------------~~~~l~iwTTtPwTlpgn~avav~p~~~y~~~~~~~---~~~~~~~~~~~~~~ 63 (192)
T d1h3na2 2 SEGAEILFPVEG---------------KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAP---EKREEVLAYVEAAK 63 (192)
T ss_dssp EEEEEEEEEBTT---------------SSCEEEEEESCGGGGGGCCEEEECTTSHHHHHTSCG---GGHHHHHHHHHHHH
T ss_pred CceEEEEEEecC---------------CCcEEEEEeCCcchhhhccEEEECCchhHHHHHhhc---cchhHHHHHHHHhh
Confidence 567899999854 357899999999999999999999999998765432 23333444444333
Q ss_pred HHcCCcCceEEEEecccccccEEeCCCCccccCCCceecEEecCccccCCCCceEEcCCCCChhhHHHHHHcCCCCCCcc
Q psy15223 1835 KKFGFKGNIIGICKGIKLSKINFFHPLSNIDINYNRLSPIYLGDYITVDSGTGIVHSAPAYGIEDFLIFKKQNMKDSDII 1914 (2492)
Q Consensus 1835 ~~~~~~~~~v~~~~G~~l~g~~~~~Pl~~~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pahg~~D~~~~~~~~l~~~~~~ 1914 (2492)
..............+..+.+.++.||++ ++.+||+.++||++++|||+||+|||||++||++|++||| +++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~------~~~vpv~~a~~V~~d~GTG~Vh~aPahg~~D~~~~~k~~l---p~~ 134 (192)
T d1h3na2 64 RKTEIERQAEGREKTGVFLGAYALNPAT------GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL---PIK 134 (192)
T ss_dssp HSCHHHHTCSSCCCCCEEEEEEEECTTT------CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC---CCC
T ss_pred hccchhhhhhhheeeccccceeeecCCC------CCEEEEEeecccccccccceEEEecccCcccceeeccccc---ccc
Confidence 2221111122222233577899999999 8999999999999999999999999999999999999999 889
Q ss_pred cccCCCCccccC--------------CCCCCCccHHhhhHHHHHHHHhcCCcce
Q psy15223 1915 NPVMDDGNFIST--------------LPLFGGMSIWKASKLICSYLKKSKTLFN 1954 (2492)
Q Consensus 1915 ~~vd~~G~~~~~--------------~~~~~G~~v~~a~~~i~~~L~~~g~l~~ 1954 (2492)
+++|.+|.++.+ ++.|.||+++||++.|++.|+++|+...
T Consensus 135 ~vi~~~g~~~~~~~~~~~~~~g~~~ns~~~~Gl~v~~A~~~Ii~~L~~~glg~~ 188 (192)
T d1h3na2 135 KVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG 188 (192)
T ss_dssp CCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE
T ss_pred ccccccccccccccccccccCceEecccccCCCcHHHHHHHHHHHHHHCCCccc
Confidence 999998887654 4679999999999999999999996533
|
| >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytidine and deoxycytidylate deaminase CodA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.95 E-value=2e-29 Score=265.28 Aligned_cols=129 Identities=37% Similarity=0.531 Sum_probs=123.4
Q ss_pred cCCCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 45 TDSPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+|..||..|+++|+++...++.|||||||+||+||+.|+|++....|++.|||++|+++|.+.++...+. |+|||||+|
T Consensus 2 ~~~~fM~~Al~~A~~a~~~~~~PVGavIV~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~-~~tly~T~E 80 (130)
T d2a8na1 2 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLP-GADLYVTLE 80 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCT-TCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhhccCCCCEEEEEEECCeEEEeecccccccccccchhHHHHHHHHHHHhCCcCCC-CCEEecccc
Confidence 3567999999999999999999999999999999999999998889999999999999999999888876 999999999
Q ss_pred ChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEecc
Q psy15223 125 PCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 174 (2492)
Q Consensus 125 PC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~g 174 (2492)
||+||++||+|+||+|||||+.+|+.|+.|++++++.++++||+++|++|
T Consensus 81 PC~mC~~ai~~~gI~rVvyg~~d~~~g~~gs~~~l~~~~~lnh~~eV~~G 130 (130)
T d2a8na1 81 PCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSG 130 (130)
T ss_dssp CBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC
T ss_pred cCHHHHHHHHHhccCEEEEEEcCCCCCCccchhhhhcCCCCCCCcEEEeC
Confidence 99999999999999999999999999999999999999999999999987
|
| >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Putative deaminase NE0047 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.94 E-value=1.2e-28 Score=273.84 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=126.0
Q ss_pred ccCCCCCCCcccccccccccCCcceeeeeee--CCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccC----CCe
Q psy15223 44 ETDSPYLSPIPHRAKLALIAGEVPVGAVLVK--NNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFS----KNY 117 (2492)
Q Consensus 44 etD~~~M~~a~~~a~~~~~~~~~pvGaviv~--~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~----~~~ 117 (2492)
.+++.+|+.|+++|+++...|+.|||||||+ +|+||+.|+|.+..++|||.||||+||++|++++++.++. ++|
T Consensus 24 ~~~e~~M~~ai~lAr~a~~~g~~P~GaviV~~~~g~Iia~g~N~~~~~~dpt~HAEi~AI~~A~~~~~~~~l~~~~l~~~ 103 (189)
T d2g84a1 24 AAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPAC 103 (189)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCCE
T ss_pred CChHHHHHHHHHHHHHHHHcCCCCEEEEEEECCCCEEEEEEcCCcCcCCCCcccHHHHHHHHHHHHhhccccccccccCc
Confidence 3556789999999999999999999999996 6899999999999999999999999999999988876553 589
Q ss_pred EEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchh----hhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 118 KIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSI----INLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 118 ~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~----~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
|||||+|||+||++||+|+||+|||||+.+++.+..|.. .........+++++|++|++++||.+||+.|+.+.++
T Consensus 104 tlY~TlEPC~MC~~Ai~~a~I~rVvyga~~~d~~~~g~~~~~~~~~~~~~~~~~~ieV~~gvl~dE~~~Llk~f~~~~g~ 183 (189)
T d2g84a1 104 ELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACNGV 183 (189)
T ss_dssp EEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCChHHHHHHHHhcCCEEEEEeeCCCccccCccccchhHHHhHHHHcCCCEEECCCcHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999998876554321 1111111123456799999999999999999987543
|
| >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Guanine deaminase GuaD species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=7.6e-29 Score=268.77 Aligned_cols=144 Identities=28% Similarity=0.411 Sum_probs=122.5
Q ss_pred cCCCCCCCcccccccccccC-CcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcC
Q psy15223 45 TDSPYLSPIPHRAKLALIAG-EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTL 123 (2492)
Q Consensus 45 tD~~~M~~a~~~a~~~~~~~-~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~ 123 (2492)
+|..||+.|+++|+++...| +.|||||||+||+||+.|+|++.+.+||+.|||++||++|++++++.+|. |||||||+
T Consensus 4 ~~~~~M~~Ai~~A~~~~~~g~~~PvGaviv~~~~ii~~g~n~~~~~~~~t~HAE~~ai~~a~~~~~~~~l~-~~tlyvTl 82 (158)
T d1wkqa_ 4 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLD-DCILYTSC 82 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCT-TEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCEEEEEEecccceeeccceeeccCCCcccHHHHHHHHHHHhcCccccC-CCEEEEEc
Confidence 46789999999999999887 88999999999999999999999999999999999999999999998886 99999999
Q ss_pred CChHhHHHHHHHhCCceEEEecCCCCCCccchhhhH----HhhcCCCceeEEeccccHHHHHHHHHHHHHh
Q psy15223 124 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINL----FQEKKLNHHTILTGGVMQKQCEKLLKSFFIK 190 (2492)
Q Consensus 124 EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~----~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~ 190 (2492)
|||+||++||+|+||+|||||+.+++.++.|..... +.....++.. .+.+++.+|+.++|+.|++.
T Consensus 83 EPC~mC~~ai~~agi~~Vvy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~v~~~~~~e~~~~f~~~~~~ 152 (158)
T d1wkqa_ 83 EPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTI-PFYQVTLTEHLSPFQAWRNF 152 (158)
T ss_dssp CCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSS-CEEECCCTTTTHHHHHHHHC
T ss_pred CCChhHHHHHHhhcCCEEEEEEcCCCccccCchhHHhHHHHhcCcceeec-cEehHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988776654332 2222222333 34467778899999888655
|
| >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytosine deaminase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.5e-28 Score=263.31 Aligned_cols=144 Identities=26% Similarity=0.429 Sum_probs=123.3
Q ss_pred ccccccCCCCCCCcccccccccccCCcceeeeee--eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCe
Q psy15223 40 NMLIETDSPYLSPIPHRAKLALIAGEVPVGAVLV--KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNY 117 (2492)
Q Consensus 40 ~~~~etD~~~M~~a~~~a~~~~~~~~~pvGaviv--~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~ 117 (2492)
.|...+|..||..|+++|+++...|+.||||||| ++|+||+.|+|++...+||+.|||++||++|.+. ...++. |+
T Consensus 3 ~m~~~~D~~~M~~A~~~A~~a~~~g~~PvGaviV~~~~g~Iia~g~N~~~~~~~~~~HAE~~Ai~~a~~~-~~~~l~-~~ 80 (156)
T d1p6oa_ 3 GMASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL-EGKVYK-DT 80 (156)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC-CHHHHT-TE
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEEeCCCEEEEEEccccccccccccchHHHHHHHHhcc-cccccc-ce
Confidence 3666789999999999999999999999999999 4799999999999889999999999999998653 333454 89
Q ss_pred EEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 118 KIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 118 ~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
|||||+|||+||++||+++||+|||||..++.. +.+...+...++. | .+++++||.+|+++||+++|.
T Consensus 81 tlyvTlEPC~mC~~ai~~~gI~rVv~G~~~~~~---~~g~~~L~~~~~~----v-~~v~~~ec~~Ll~~Ff~~rr~ 148 (156)
T d1p6oa_ 81 TLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFK---SKGEKYLQTRGHE----V-VVVDDERCKKIMKQFIDERPQ 148 (156)
T ss_dssp EEEEEECCCHHHHHHHHHHTCCEEEEEESSSCC---CTHHHHHHHTTCE----E-EECCCHHHHHHHHHHHHHCHH
T ss_pred EEEeeccCCHHHHHHHHHhCCCEEEEcCCCCCC---cchHHHhhcCCeE----E-eeeCHHHHHHHHHHHHHHccH
Confidence 999999999999999999999999999765432 4467778777765 2 479999999999999987543
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-25 Score=278.13 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=103.1
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHH
Q psy15223 1595 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 1674 (2492)
Q Consensus 1595 ~~~~~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~ 1674 (2492)
.+.++.++|++ || +|||.+||||+++.++.|+++||+|+.|++|.+..|+|+||.+|...|++. +.++++
T Consensus 18 ~~~~~~~~yv~-Gp-tv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~---~~~~~e----- 87 (315)
T d1li5a2 18 IHAGEVGMYVC-GI-TVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN---GESFVA----- 87 (315)
T ss_dssp SSTTEEEEEEC-CC-BSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT---TCCHHH-----
T ss_pred CCCCeEEEEec-CC-cCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhh---hhcccc-----
Confidence 35567778885 85 999999999999999999999999999999999999999999999999887 788877
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCeeccCChHHHHHHHHHHHHHHhCCceEEeCcc
Q psy15223 1675 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLKP 1732 (2492)
Q Consensus 1675 ~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~F~~L~~kGliyr~~~~ 1732 (2492)
++.++.....+.++++++..+- .+.+. .++...++..+.+|.++|.+|....-
T Consensus 88 --~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~~~~e~~~~~~~l~~~~~~~~~~~~ 140 (315)
T d1li5a2 88 --MVDRMIAEMHKDFDALNILRPD--MEPRA-THHIAEIIELTEQLIAKGHAYVADNG 140 (315)
T ss_dssp --HHHHHHHHHHHHHHHTTCCCCS--BCCBG-GGCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred --ccccchhhhhhhHHhcCCCCCc--EEEec-chhhhhhhhHHHHhhccCceeccccc
Confidence 6777888899999999996642 33333 35666677889999999999876543
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.5e-25 Score=277.29 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=103.3
Q ss_pred ccCCCCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHH
Q psy15223 445 ASINRPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKA 524 (2492)
Q Consensus 445 ~~~~~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~ 524 (2492)
.++++.++++ .|| +|||.+||||+++.++.|+++||+++.|++|.+..|+|+||.+|...|++. +.++++
T Consensus 18 ~~~~~~~~yv-~Gp-tv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~---~~~~~e----- 87 (315)
T d1li5a2 18 IHAGEVGMYV-CGI-TVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN---GESFVA----- 87 (315)
T ss_dssp SSTTEEEEEE-CCC-BSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT---TCCHHH-----
T ss_pred CCCCeEEEEe-cCC-cCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhh---hhcccc-----
Confidence 4667778877 485 999999999999999999999999999999999999999999999999986 788887
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcCCeEEeCc
Q psy15223 525 RALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKGYVYHGLK 581 (2492)
Q Consensus 525 ~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kGliyr~~~ 581 (2492)
++.++.....+.+.++++..+ ..+.+. .++...++..+.+|.++|.+|....
T Consensus 88 --~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~~~~e~~~~~~~l~~~~~~~~~~~ 139 (315)
T d1li5a2 88 --MVDRMIAEMHKDFDALNILRP--DMEPRA-THHIAEIIELTEQLIAKGHAYVADN 139 (315)
T ss_dssp --HHHHHHHHHHHHHHHTTCCCC--SBCCBG-GGCHHHHHHHHHHHHHTTSEEECTT
T ss_pred --ccccchhhhhhhHHhcCCCCC--cEEEec-chhhhhhhhHHHHhhccCceecccc
Confidence 677788899999999999653 233343 4566667788999999999987644
|
| >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=3.5e-26 Score=245.69 Aligned_cols=134 Identities=27% Similarity=0.415 Sum_probs=116.7
Q ss_pred CCCCCCcccccccccc--cCCcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCC
Q psy15223 47 SPYLSPIPHRAKLALI--AGEVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLE 124 (2492)
Q Consensus 47 ~~~M~~a~~~a~~~~~--~~~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~E 124 (2492)
+.||..|+.+|+++.. .|++|||||||+||+||+.|+|...+ ..|||++||++|.+... ++. |++||||+|
T Consensus 3 e~~M~~Al~~A~~~~~~~~~~~pVGaViV~~g~IIa~g~n~~~~----~~hae~~ai~~a~~~~~--~l~-~~~lYvTlE 75 (147)
T d2hxva2 3 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFG----GPHAERMAIESARKKGE--DLR-GATLIVTLE 75 (147)
T ss_dssp HHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTT----SCCHHHHHHHHHHHTTC--CCT-TCEEEEEEC
T ss_pred HHHHHHHHHHHHhccccCCCCCcEEEEEEECCeEEEeeceeccC----CchHHHHHHHHHHHhCC--CCC-CCEEeeccc
Confidence 3599999999998865 47899999999999999999997644 68999999999987643 454 899999999
Q ss_pred Ch------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhcc
Q psy15223 125 PC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 192 (2492)
Q Consensus 125 PC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~ 192 (2492)
|| |||++||+++||+|||||+.||+.+ .++++..|.++++ .|++|++++||.+|++.||++.+
T Consensus 76 PC~~~~~~p~C~~ai~~agi~rVv~g~~dp~~~-~~~~~~~l~~~~i----~V~~gvl~~e~~~l~~~F~~~~~ 144 (147)
T d2hxva2 76 PCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPV-SGNGVEKFRNHGI----EVIEGVLEEEVKKLCEFFITYVT 144 (147)
T ss_dssp CCCSCSSSCCHHHHHHHHTCCEEEEEECCCCGG-GCCHHHHHHTTTC----EEEECTTHHHHHHHTHHHHHHHH
T ss_pred cccccCCChhhhHHHHhcCcceeeeeccccccc-cchhhhhhhcCCC----EEEeCcCHHHHHHHHHHHHHHHH
Confidence 99 7799999999999999999999874 5677888876655 59999999999999999997644
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=2.1e-25 Score=251.23 Aligned_cols=176 Identities=14% Similarity=0.241 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhh--cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHH
Q psy15223 1068 YRRIRNTLRFLLA--NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1068 ~~kl~n~~rf~l~--~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~ 1145 (2492)
+.||||++||+++ ++++|+... ..+...++.+|+|+++++++++++++++|++|+|++|++.+++|++++||++|++
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~-~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~e 80 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKN-PPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVR 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTS-CCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHH
T ss_pred CcHHHHHHHHHHHhccccCCCccC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHHH
Confidence 6799999999874 556666543 3455678899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHH
Q psy15223 1146 ILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLL 1225 (2492)
Q Consensus 1146 ~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~ 1225 (2492)
++|+|+|+. .++..|++++++|+++++.++++|||||||+|||+|++|+... ....++|||++.||+.++.+.+++++
T Consensus 81 ~~K~~l~~~-~~~~~~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~~-~~~~~~sv~~~~wP~~~~~~~d~~~~ 158 (180)
T d1ilea1 81 RNRRRFWKN-EDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV-RLEAKESVHLADWPEADPALADEALV 158 (180)
T ss_dssp HHHHHHHTC-TTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT-STTSCSSGGGSCCCCCCTTTCCHHHH
T ss_pred hccchhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccchHHHHhCCCCCcccCCHHHH
Confidence 999999975 4677889999999999999999999999999999999997531 12335799999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Q psy15223 1226 YKYMILKKIRSKVMQKLEKIRSTGI 1250 (2492)
Q Consensus 1226 ~~~~~~~~lr~~v~~~le~~R~~k~ 1250 (2492)
+.++.++++.+.+ +.+|++++
T Consensus 159 ~~~~~v~~vi~~i----R~~R~~~~ 179 (180)
T d1ilea1 159 AQMRAVLKVVDLA----RAARAKSG 179 (180)
T ss_dssp HHHHHHHHHHHHH----TTCTTSCC
T ss_pred HHHHHHHHHHHHH----HHHHHHcc
Confidence 8888887655544 34565544
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=2.8e-25 Score=250.14 Aligned_cols=177 Identities=15% Similarity=0.251 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHh--cCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHH
Q psy15223 2218 YRRIRNTLRFLLA--NTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLD 2295 (2492)
Q Consensus 2218 ~~kl~n~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle 2295 (2492)
++||||++||+++ ++++++... ..+...++.+|+|+++++++++++++++|++|+|++|++.+++|++++||++|++
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~-~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~e 80 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKN-PPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVR 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTS-CCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHH
T ss_pred CcHHHHHHHHHHHhccccCCCccC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHHH
Confidence 6799999999874 455665543 3445667889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHH
Q psy15223 2296 ILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLL 2375 (2492)
Q Consensus 2296 ~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~ 2375 (2492)
.+|+++|+. .++..|+++++++++++..++++|||||||+|||||++|+... .....+||++++||+.++.+.|++++
T Consensus 81 ~~K~~l~~~-~~~~~~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~~-~~~~~~sv~~~~wP~~~~~~~d~~~~ 158 (180)
T d1ilea1 81 RNRRRFWKN-EDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV-RLEAKESVHLADWPEADPALADEALV 158 (180)
T ss_dssp HHHHHHHTC-TTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT-STTSCSSGGGSCCCCCCTTTCCHHHH
T ss_pred hccchhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccchHHHHhCCCCCcccCCHHHH
Confidence 999999975 4667788999999999999999999999999999999997641 12346799999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15223 2376 YKYMILKKIRSKVMQKLEKIRSTGII 2401 (2492)
Q Consensus 2376 ~~~~~~~~~r~~v~~~i~~~R~~~~i 2401 (2492)
+.++.+++ |.+.+|++|++++|
T Consensus 159 ~~~~~v~~----vi~~iR~~R~~~~i 180 (180)
T d1ilea1 159 AQMRAVLK----VVDLARAARAKSGV 180 (180)
T ss_dssp HHHHHHHH----HHHHHTTCTTSCCC
T ss_pred HHHHHHHH----HHHHHHHHHHHccC
Confidence 88877654 56667777776654
|
| >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=8.8e-26 Score=243.86 Aligned_cols=134 Identities=28% Similarity=0.414 Sum_probs=121.4
Q ss_pred CCCCCCCcccccccccccC--CcceeeeeeeCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcC
Q psy15223 46 DSPYLSPIPHRAKLALIAG--EVPVGAVLVKNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTL 123 (2492)
Q Consensus 46 D~~~M~~a~~~a~~~~~~~--~~pvGaviv~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~ 123 (2492)
|+.||..|+.+|+++...+ ++|||||||+||+||+.|+|...+ +.|||..|+..|...+ .++++|+|+
T Consensus 2 De~fM~~Al~~A~~a~~~~~~~p~VGaViV~~g~ii~~g~n~~~~----~~hae~~a~~~a~~~~------~~~~lyvtl 71 (145)
T d2b3za2 2 EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYG----EAHAEVHAIHMAGAHA------EGADIYVTL 71 (145)
T ss_dssp HHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTT----SCCHHHHHHHHHGGGG------TTCEEEESS
T ss_pred hHHHHHHHHHHHHhcccCCCCCCCEEEEEEecCceeccccccccC----CCchhhHHHHHHHHHh------hcccccccc
Confidence 5679999999999997655 569999999999999999997755 7899999999988764 389999999
Q ss_pred CCh------HhHHHHHHHhCCceEEEecCCCCCCccchhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHHhccC
Q psy15223 124 EPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 193 (2492)
Q Consensus 124 EPC------~mC~~ai~~~gi~rvv~g~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~~~~~ 193 (2492)
||| |||++||+|+||+|||||+.||+.++.|++++++.+++++ |.+|++++||.+|++.||+++|+
T Consensus 72 epc~~~~~~~mC~~aIi~agI~rVvyg~~d~~~~~~g~~~~~l~~~gie----V~~gvl~~e~~~ll~~Ff~~~r~ 143 (145)
T d2b3za2 72 EPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE----VREGILADQAERLNEKFLHFMRT 143 (145)
T ss_dssp CCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCE----EEECTTHHHHHHHTHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHcCCCeEEecccccCccccCcHHHHHHcCCCE----EEcCcCHHHHHHHHHHHHHHHhc
Confidence 999 6999999999999999999999999999999999987764 88999999999999999998774
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=3.1e-23 Score=240.93 Aligned_cols=189 Identities=14% Similarity=0.240 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhh
Q psy15223 2219 RRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 2298 (2492)
Q Consensus 2219 ~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K 2298 (2492)
+||||+.||++++..++++.. ...+..|+||+++++++++.++++|++|+|++|++.+++|+|++||+||++++|
T Consensus 2 NKlwNa~rF~~~~~~~~~~~~-----~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~k 76 (218)
T d1ivsa2 2 NKLYNAARFVLLSREGFQAKE-----DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAK 76 (218)
T ss_dssp HHHHHHHHHHHHHSSSCCCCB-----CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred hHHHHHHHHHHhCcCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHHh
Confidence 699999999999988887643 234678999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCccCCCHHHHHHH
Q psy15223 2299 DRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKY 2378 (2492)
Q Consensus 2299 ~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~~~~~~l~~~~ 2378 (2492)
+++++.. ..++.+++++++.+++||||||||+|||+|+.|+++ +|++.+.||+.+ ..++.++..+
T Consensus 77 ~~~~~~~------~~~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~~-------~si~~~~wP~~~--~~d~~~~~~~ 141 (218)
T d1ivsa2 77 PALKAGN------AHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGK-------EELALEAWPEPG--GRDEEAERAF 141 (218)
T ss_dssp HHHHTTB------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCC-------SCGGGSCCCCCC--CCCHHHHHHH
T ss_pred hhccccc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cccccccCCccc--hhhhHHHhhh
Confidence 9998642 246789999999999999999999999999999764 689999999854 3456666777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCceeEEEEEeChhhHHHHHHhHHHHHHhhhc
Q psy15223 2379 MILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLLT 2434 (2492)
Q Consensus 2379 ~~~~~~r~~v~~~i~~~R~~~~i~~~~~~~v~i~~~~~~~~~l~~~~~~L~~l~~v 2434 (2492)
+.+. ++...+|++|++++|+++.+..+.+..+.+ .+....+.|+.+..+
T Consensus 142 ~~~~----~ii~~iR~~R~e~~i~~~~~~~~~i~~~~~---~l~~~~~~i~~la~i 190 (218)
T d1ivsa2 142 EALK----QAVTAVRALKAEAGLPPAQEVRVYLEGETA---PVEENLEVFRFLSRA 190 (218)
T ss_dssp HHHH----HHHHHHHHHHHHHTCCTTCCCEEEEEESCH---HHHHTHHHHHHHHCC
T ss_pred hHHH----HHHHHHHHHHHHhCCCCCCeeEEEEeCChH---HHHHHHHHHHHHhcc
Confidence 7665 467788999999999998888887765432 344444556655443
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=5.6e-23 Score=238.73 Aligned_cols=188 Identities=14% Similarity=0.239 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhh
Q psy15223 1069 RRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILK 1148 (2492)
Q Consensus 1069 ~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~K 1148 (2492)
+||||+.||++++.++|++.. ...+..|+|+++++++++++++++|++|+|++|++.+++|++++||+||++++|
T Consensus 2 NKlwNa~rF~~~~~~~~~~~~-----~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~k 76 (218)
T d1ivsa2 2 NKLYNAARFVLLSREGFQAKE-----DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAK 76 (218)
T ss_dssp HHHHHHHHHHHHHSSSCCCCB-----CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred hHHHHHHHHHHhCcCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHHh
Confidence 699999999999999887653 234678999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcccCCchHHHHHH
Q psy15223 1149 DRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKVYNSKKLLYKY 1228 (2492)
Q Consensus 1149 drl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~~~~~~~~~~~~ 1228 (2492)
++++++. ..++.+|+++++.++++|+|||||+|||+|+.|+++ +|++++.||+... .+..++..+
T Consensus 77 ~~~~~~~------~~~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~~-------~si~~~~wP~~~~--~d~~~~~~~ 141 (218)
T d1ivsa2 77 PALKAGN------AHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGK-------EELALEAWPEPGG--RDEEAERAF 141 (218)
T ss_dssp HHHHTTB------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCC-------SCGGGSCCCCCCC--CCHHHHHHH
T ss_pred hhccccc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cccccccCCccch--hhhHHHhhh
Confidence 9998753 346889999999999999999999999999999764 6999999998543 355666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEeCchhHHHHHHhHHHHHHhhh
Q psy15223 1229 MILKKIRSKVMQKLEKIRSTGIIGSSLQAEIILKINKLDFEILNEFGEELKFFLL 1283 (2492)
Q Consensus 1229 ~~~~~lr~~v~~~le~~R~~k~i~~s~~a~v~i~~~~~~~~~l~~~~~~L~~l~~ 1283 (2492)
+.+.++. ..++.+|++++|+.+.+..+.+..+. +.++.....|+.+..
T Consensus 142 ~~~~~ii----~~iR~~R~e~~i~~~~~~~~~i~~~~---~~l~~~~~~i~~la~ 189 (218)
T d1ivsa2 142 EALKQAV----TAVRALKAEAGLPPAQEVRVYLEGET---APVEENLEVFRFLSR 189 (218)
T ss_dssp HHHHHHH----HHHHHHHHHHTCCTTCCCEEEEEESC---HHHHHTHHHHHHHHC
T ss_pred hHHHHHH----HHHHHHHHHhCCCCCCeeEEEEeCCh---HHHHHHHHHHHHHhc
Confidence 7777554 45567899999998888888776543 234444455555443
|
| >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Deoxycytidylate deaminase species: Bacteriophage T4 [TaxId: 10665]
Probab=99.80 E-value=6.8e-21 Score=214.85 Aligned_cols=132 Identities=26% Similarity=0.293 Sum_probs=108.9
Q ss_pred CCCCCCcccccccccccCCcceeeeeeeCCEEEEEEEcCCccCCC-----------------------------------
Q psy15223 47 SPYLSPIPHRAKLALIAGEVPVGAVLVKNNLVISYGYNQQITRND----------------------------------- 91 (2492)
Q Consensus 47 ~~~M~~a~~~a~~~~~~~~~pvGaviv~~~~ii~~g~n~~~~~~~----------------------------------- 91 (2492)
..||..|...|++| .+++.+||||||+||+||++|+|+.+.+.+
T Consensus 4 ~~~M~~A~~~A~rS-~c~~~~VGAVIV~~~~IIs~G~Ng~p~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (193)
T d1vq2a_ 4 STVLQIAYLVSQES-KCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGSTD 82 (193)
T ss_dssp HHHHHHHHHHHTTC-CCSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC--------------------
T ss_pred HHHHHHHHHHHHhC-CCCCCCeEEEEEECCEEEEEeecCCcCCCCccccchhhhhhhcccchhhhhhccccccccccccc
Confidence 35899998899887 677899999999999999999998776532
Q ss_pred ------------------CCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHhCCceEEEecCCCCCCcc
Q psy15223 92 ------------------PTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHVRLGEIIYGTPSFKTGAC 153 (2492)
Q Consensus 92 ------------------~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~gi~rvv~g~~~~~~~~~ 153 (2492)
.+.|||++||.+|.+... .+ .+++||||+|||+||+++|+++||+||||+..+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~HAE~nai~~a~~~~~--~~-~~~~ly~t~~PC~~Ca~~i~~~gI~~V~~~~~~~~~~-- 157 (193)
T d1vq2a_ 83 RFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGS--SI-EGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK-- 157 (193)
T ss_dssp CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTC--CC-TTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC--
T ss_pred ccchhhccccccccccCCCCcCHHHHHHHHHHhcCC--CC-CCceEEecCCCcHHHHHHHHhccCCEEEEEeCCCCcc--
Confidence 247999999999988643 34 4899999999999999999999999999998876653
Q ss_pred chhhhHHhhcCCCceeEEeccccHHHHHHHHHHHHH
Q psy15223 154 GSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFI 189 (2492)
Q Consensus 154 g~~~~~~~~~~~~~~~~v~~gv~~~e~~~l~~~~~~ 189 (2492)
+.+..++++.|++ |. ++.++|+.+|+..++.
T Consensus 158 ~~~~~~l~~~gI~----v~-~i~~~~~~~l~~~~~~ 188 (193)
T d1vq2a_ 158 PGWDDILRNAGIE----VF-NVPKKNLNKLNWENIN 188 (193)
T ss_dssp TTTTHHHHHTTCE----EE-ECCGGGCCSSCGGGCC
T ss_pred HHHHHHHHHCCCE----EE-ecCHHHHHHHHHHHHH
Confidence 3457789999986 54 5888888887666543
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=1.2e-18 Score=214.34 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=58.4
Q ss_pred cCceeeecccchhhhhHHHHHHHH--HHhcCCccccEEEEeeeE-EcCCCceeeeccCCccCcchhhhccChhHHHHHHh
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTS--IILNKSAPYKALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWVA 2196 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~--~~l~~~~pfk~v~~hG~v-ld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~l~ 2196 (2492)
.++++++.|.|++..|........ ....+..|+ .++.|||+ ++.+|.|||||+||+|+|+|+++.||+|++||+++
T Consensus 227 ~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~l 305 (317)
T d1irxa2 227 FGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYA 305 (317)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHH
T ss_pred CceeEEEecceecccchhhhHhhhhhhhhcCCCCc-EEEEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHHhc
Confidence 567888999999876543322221 222344333 45789987 46677899999999999999999999999999999
Q ss_pred ccCCCCccccc
Q psy15223 2197 STDYSKDLSIS 2207 (2492)
Q Consensus 2197 s~~~~~d~~fs 2207 (2492)
+..+.++++|+
T Consensus 306 ~~~~~~~i~FD 316 (317)
T d1irxa2 306 RHRPNKEIKID 316 (317)
T ss_dssp SSCTTSCEEEC
T ss_pred CCCCCCCcCCC
Confidence 88888899987
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=8.7e-18 Score=206.70 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=58.7
Q ss_pred CcCeeeeecccccchhhHHHHHHH--HHHhcCCCCceEEEEeeEE-EcCCCccccccCCCccCcchhhhhcChhhHHHHh
Q psy15223 969 IFPADLYLEGSDQHRGWFHSSLLT--SIILNKSAPYKALLTHGFV-VDSKGKKMSKSKGNIIKPQKLCNLFGAEILRLWV 1045 (2492)
Q Consensus 969 ~~p~Dl~~~G~D~~rgwf~s~l~~--~~~~~~~~p~k~v~~hG~v-ld~~G~KMSKS~GN~i~p~~ii~~yGaD~lRl~l 1045 (2492)
..+.++++.|.|++..|....... .....+..|. .++.|||+ +|++|.|||||+||+|+|+|+++.||+|++||++
T Consensus 226 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~ 304 (317)
T d1irxa2 226 HFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIY 304 (317)
T ss_dssp HSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHH
T ss_pred cCceeEEEecceecccchhhhHhhhhhhhhcCCCCc-EEEEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHHh
Confidence 346788899999987654332222 1222333333 35789987 5667889999999999999999999999999999
Q ss_pred hccCcccccccC
Q psy15223 1046 ASTDYSKDLSIS 1057 (2492)
Q Consensus 1046 ~s~~~~~d~~fs 1057 (2492)
++..+.++++|+
T Consensus 305 l~~~~~~~i~FD 316 (317)
T d1irxa2 305 ARHRPNKEIKID 316 (317)
T ss_dssp HSSCTTSCEEEC
T ss_pred cCCCCCCCcCCC
Confidence 998888889886
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=9.3e-15 Score=154.27 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHh
Q psy15223 2217 TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 2296 (2492)
Q Consensus 2217 ~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~ 2296 (2492)
+++||||.+......+.... .......++..|+|+++++++++++|+++|++|+|++|++.+++|+ +.+++++
T Consensus 1 Flnklw~~v~~~~~~~~~~~---~~~~~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~-n~l~~~~--- 73 (128)
T d1h3na1 1 FLNRIYRRVAEDREALLETS---GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NALYEYR--- 73 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHH---
T ss_pred CcHHHHHHHHHHHhhccccc---cccCcccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh-cccchhh---
Confidence 36788887655443322211 1223445678899999999999999999999999999999999998 4555433
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcccCCccccCCCCeeeccCCCCCcc
Q psy15223 2297 LKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPKV 2368 (2492)
Q Consensus 2297 ~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~~aEelw~~L~~~~~~~~~~~sV~~~~wP~~~~~ 2368 (2492)
+++ ....++.++++++++||+|||||+|||+|+.|++ +||+.++||+.++.
T Consensus 74 -~~~------------~~~~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~--------~si~~~~WP~~d~~ 124 (128)
T d1h3na1 74 -KDR------------PVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWP--------DSLFEAGWPELDEK 124 (128)
T ss_dssp -HHS------------CSCHHHHHHHHHHHHHHTTTSHHHHHHHHTTTCS--------SCHHHHCCCCCCGG
T ss_pred -hhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CccccCCCCCcCHH
Confidence 111 1123567889999999999999999999999965 47999999997654
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1.1e-14 Score=153.69 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHh
Q psy15223 1067 TYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDI 1146 (2492)
Q Consensus 1067 ~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~ 1146 (2492)
+++|+||.+......+..- ........++..|+|+++++++++++|+++|++|+|++|++.+++|+ +.++.++
T Consensus 1 Flnklw~~v~~~~~~~~~~---~~~~~~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~-n~l~~~~--- 73 (128)
T d1h3na1 1 FLNRIYRRVAEDREALLET---SGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NALYEYR--- 73 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHH---
T ss_pred CcHHHHHHHHHHHhhcccc---ccccCcccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh-cccchhh---
Confidence 3678888765544433221 11233456778999999999999999999999999999999999998 4555443
Q ss_pred hhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHccCCCccccCCCceeeccCCCCcc
Q psy15223 1147 LKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSFTSEEAWSIFSDKNFYIESGETIFTQLHYKLPK 1217 (2492)
Q Consensus 1147 ~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~~aEeiw~~l~~~~~~~~~~~SV~~~~wp~~~~ 1217 (2492)
+++ ....++.++++.++++|+|||||+|||+|+.|++ +||+.+.||++++
T Consensus 74 -~~~------------~~~~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~--------~si~~~~WP~~d~ 123 (128)
T d1h3na1 74 -KDR------------PVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWP--------DSLFEAGWPELDE 123 (128)
T ss_dssp -HHS------------CSCHHHHHHHHHHHHHHTTTSHHHHHHHHTTTCS--------SCHHHHCCCCCCG
T ss_pred -hhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CccccCCCCCcCH
Confidence 211 1224567889999999999999999999999964 4799999998654
|
| >d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.7e-14 Score=156.49 Aligned_cols=82 Identities=38% Similarity=0.780 Sum_probs=74.8
Q ss_pred chhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..++ .|||+||++||+|+||+|||||+.+++.|+.|+....+....++++++|++|++++||.+|++.||+++|.
T Consensus 74 l~~~~lytT~ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~l~~~~~~~~ieV~~gvl~ee~~~ll~~Ff~~~r~ 153 (156)
T d1z3aa1 74 LIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQ 153 (156)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHT
T ss_pred ccCceeeeccccccchhhHHHHhCCceEEEEeecCCCcccCcHHHHHHhCCCCCCcEEEeCcCHHHHHHHHHHHHHHHHh
Confidence 45564444 59999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cee
Q psy15223 1409 FVK 1411 (2492)
Q Consensus 1409 ~~~ 1411 (2492)
+++
T Consensus 154 ~~~ 156 (156)
T d1z3aa1 154 EIK 156 (156)
T ss_dssp TCC
T ss_pred CcC
Confidence 764
|
| >d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.38 E-value=7.4e-14 Score=149.88 Aligned_cols=79 Identities=30% Similarity=0.507 Sum_probs=71.1
Q ss_pred chhhhhh-ccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNN-LFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~-v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..+ ..|||+||++||+|+||+|||||+.+++.|+.|+.++++....+||++++.+|++ +||.+|+++||+++|+
T Consensus 70 l~~~tlY~TlEPC~mC~~ai~~~~I~rVvyg~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-ee~~~Ll~~Ff~~~R~ 148 (151)
T d1wwra1 70 LEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPL-EEASELLSEFFKKLRN 148 (151)
T ss_dssp CTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEECCC-HHHHHHHHHHHHHHHH
T ss_pred cCCcEeeecccCCcHHHHHHHHhcCCeEEEEeecCCCCccccHHHHHhhhhcCCCCEEEeecH-HHHHHHHHHHHHHHhh
Confidence 3556444 4699999999999999999999999999999999999999999999999999998 5899999999999885
Q ss_pred c
Q psy15223 1409 F 1409 (2492)
Q Consensus 1409 ~ 1409 (2492)
.
T Consensus 149 ~ 149 (151)
T d1wwra1 149 N 149 (151)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: tRNA adenosine deaminase TadA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.33 E-value=1.9e-13 Score=147.32 Aligned_cols=78 Identities=38% Similarity=0.814 Sum_probs=71.4
Q ss_pred hhhh-hhccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1331 NRCF-NNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1331 ~RC~-~~v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
..|. .+..|||+||++||+|+||+|||||+.+++.|+.|+.++++....++|++++++|+|++||.+|+++||+++|.
T Consensus 72 ~~~~ly~t~ePC~mC~~aii~~gI~~Vv~g~~d~~~~~~g~~~~~l~~~~i~~~~~v~~Gvl~~e~~~L~~~Ff~~~r~ 150 (151)
T d2b3ja1 72 EGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRA 150 (151)
T ss_dssp TTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeccchhhhhchhhhhccceEEEEeecCCCCccCcchhhhhhcCCCCCCEEEcCcCHHHHHHHHHHHHHHHhC
Confidence 4453 44469999999999999999999999999999999999999999999999999999999999999999998774
|
| >d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: YggJ N-terminal domain-like domain: Hypothetical protein HI0303 species: Haemophilus influenzae [TaxId: 727]
Probab=99.23 E-value=3.5e-12 Score=118.59 Aligned_cols=66 Identities=32% Similarity=0.526 Sum_probs=59.9
Q ss_pred ccccccccccccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEee
Q psy15223 203 KMLRFYYPIPFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISF 268 (2492)
Q Consensus 203 ~M~r~f~~~~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~ 268 (2492)
|+||||++..+..++.+.|+++++||+ +|||+++||.|.+|||+|++|.|+|++++++ +.+++++.
T Consensus 1 ripR~f~~~~l~~~~~i~L~~~~~hHl~~VLR~k~Gd~v~l~dg~g~~~~~~I~~i~k~~~~~~i~~~ 68 (72)
T d1nxza1 1 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGR 68 (72)
T ss_dssp CCCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEEETTEEEEEECCC
T ss_pred CCccEEcCcccCCCCEEEcCHHHHHHHHheeCCCCCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEEEE
Confidence 689999999999999999999999999 9999999999999999999999999999765 55666544
|
| >d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Putative deaminase NE0047 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.17 E-value=1.9e-12 Score=142.88 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=66.5
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc----cCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK----KLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~----~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
....|..++ .|||+||++||+|+||+|||||+++++.+++|+.....+.. ..+|+++|++|++++||.+||++|+
T Consensus 99 ~l~~~tlY~TlEPC~MC~~Ai~~a~I~rVvyga~~~d~~~~g~~~~~~~~~~~~~~~~~~ieV~~gvl~dE~~~Llk~f~ 178 (189)
T d2g84a1 99 GLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYN 178 (189)
T ss_dssp TSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHH
T ss_pred cccCcEEEeccCCChHHHHHHHHhcCCEEEEEeeCCCccccCccccchhHHHhHHHHcCCCEEECCCcHHHHHHHHHHHH
Confidence 356775555 69999999999999999999999999999999877665543 2247899999999999999999999
Q ss_pred hccc
Q psy15223 1404 IKRR 1407 (2492)
Q Consensus 1404 ~~rr 1407 (2492)
++.+
T Consensus 179 ~~~g 182 (189)
T d2g84a1 179 ACNG 182 (189)
T ss_dssp HHCS
T ss_pred HcCC
Confidence 8754
|
| >d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Bacillus subtilis [TaxId: 1423]
Probab=99.03 E-value=2.8e-11 Score=129.40 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=59.4
Q ss_pred CCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1339 EPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1339 ~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+||+||++||+|+||+|||||+.+++.|+.|+.++++. +++++|.+|++++||.+|+++||+++|.
T Consensus 78 ~~~~mC~~aIi~agI~rVvyg~~d~~~~~~g~~~~~l~----~~gieV~~gvl~~e~~~ll~~Ff~~~r~ 143 (145)
T d2b3za2 78 GKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EAGIEVREGILADQAERLNEKFLHFMRT 143 (145)
T ss_dssp SSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH----TTTCEEEECTTHHHHHHHTHHHHHHHHH
T ss_pred CCcchHHHHHHHcCCCeEEecccccCccccCcHHHHHH----cCCCEEEcCcCHHHHHHHHHHHHHHHhc
Confidence 34479999999999999999999999999999888765 4668999999999999999999999874
|
| >d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: YggJ N-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Probab=99.02 E-value=8.5e-11 Score=108.94 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=55.9
Q ss_pred ccccccc---cccCCcEEEeCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccc-eEEEEEeee
Q psy15223 205 LRFYYPI---PFIIGQYLYLPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKK-ILIQIISFL 269 (2492)
Q Consensus 205 ~r~f~~~---~~~~~~~i~L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~-~~~~~~~~~ 269 (2492)
+|||++. .+..+..+.|+++++||+ +|||+|+||.|.|+||+|++|.|+|++++++ ..+.+++..
T Consensus 1 QR~Fi~~~~~~~~~~~~i~l~~~~~hHl~~VLR~k~Gd~i~l~dg~g~~~~~~I~~i~k~~v~~~i~e~~ 70 (72)
T d1vhka1 1 QRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWT 70 (72)
T ss_dssp CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CcEEECCchhhcccCCEEEECHHHHHHHHheeccCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 5999963 456678899999999999 9999999999999999999999999999776 556666543
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.00 E-value=1.5e-09 Score=123.74 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=88.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHH
Q psy15223 2245 SDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQS 2324 (2492)
Q Consensus 2245 ~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~ 2324 (2492)
..+...|++++..++++.+++.++|++|+|++|++.++++++ .+|.|++..++|-... .+..+...++.++.++++.
T Consensus 27 ~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~N~yi~~~~PW~l~k-~~~~~~~~vl~~~~~~~~~ 103 (210)
T d1rqga1 27 GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLAS--FGNRYFDHKQPWKTAK-EDKVRTGTTVNISLQIVKA 103 (210)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHTTCHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999994 5899999888865443 3556777889999999999
Q ss_pred HHHHHhccchHHHHHHHHHcccC
Q psy15223 2325 LLRLISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2325 l~~lLaPi~P~~aEelw~~L~~~ 2347 (2492)
++.+|+||||++|++||+.|+-.
T Consensus 104 l~ilL~PfmP~~a~~i~~~Lg~~ 126 (210)
T d1rqga1 104 LGILLEPFLPDASEKIWHLLNLD 126 (210)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhHHHHHHHHHHcCCC
Confidence 99999999999999999999753
|
| >d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytidine and deoxycytidylate deaminase CodA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.98 E-value=5e-11 Score=124.11 Aligned_cols=61 Identities=30% Similarity=0.475 Sum_probs=55.2
Q ss_pred cchhhhhhc-cCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEcc
Q psy15223 1329 LCNRCFNNL-FEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGG 1389 (2492)
Q Consensus 1329 LC~RC~~~v-~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g 1389 (2492)
.+..|..++ .|||+||++||+|+||+|||||+.+++.|++|+.++++..+.+||+++|++|
T Consensus 69 ~l~~~tly~T~EPC~mC~~ai~~~gI~rVvyg~~d~~~g~~gs~~~l~~~~~lnh~~eV~~G 130 (130)
T d2a8na1 69 RLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSG 130 (130)
T ss_dssp CCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC
T ss_pred CCCCCEEecccccCHHHHHHHHHhccCEEEEEEcCCCCCCccchhhhhcCCCCCCCcEEEeC
Confidence 355664444 6999999999999999999999999999999999999999999999999987
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.98 E-value=1.3e-09 Score=124.39 Aligned_cols=100 Identities=20% Similarity=0.279 Sum_probs=89.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHH
Q psy15223 1094 ISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQ 1173 (2492)
Q Consensus 1094 ~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~ 1173 (2492)
...+...|++++..++++.+++.++|++|+|++|++.++++++ .+|.|++..++|-... .+..+...+++++.++++
T Consensus 26 ~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~N~yi~~~~PW~l~k-~~~~~~~~vl~~~~~~~~ 102 (210)
T d1rqga1 26 RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLAS--FGNRYFDHKQPWKTAK-EDKVRTGTTVNISLQIVK 102 (210)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHTTCHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999994 5899999999875543 356677888999999999
Q ss_pred HHHHHhcccchhHHHHHHHHccC
Q psy15223 1174 SLLRLISPILSFTSEEAWSIFSD 1196 (2492)
Q Consensus 1174 ~l~~lLaPilP~~aEeiw~~l~~ 1196 (2492)
.++.+|+||||++|+++|+.|+-
T Consensus 103 ~l~ilL~PfmP~~a~~i~~~Lg~ 125 (210)
T d1rqga1 103 ALGILLEPFLPDASEKIWHLLNL 125 (210)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHcCC
Confidence 99999999999999999999974
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=5.5e-09 Score=128.44 Aligned_cols=128 Identities=17% Similarity=0.235 Sum_probs=88.0
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHH--hCc-------------
Q psy15223 449 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL--YGK------------- 513 (2492)
Q Consensus 449 ~~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~--~~~------------- 513 (2492)
+++.+|--.-|+|+|+|||||++|-++.|+++|..+..||+|.-..=....|.+|-.-+... ++.
T Consensus 7 ~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~ 86 (348)
T d1f7ua2 7 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 86 (348)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhHH
Confidence 46788999999999999999999999999999999999999987777788888775433211 000
Q ss_pred ------------C---C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCeeecCChHH
Q psy15223 514 ------------N---L-------------------SPIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLN 559 (2492)
Q Consensus 514 ------------~---~-------------------~~~e~~~~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y 559 (2492)
. . ...+..+..+..+...++.+++.+++||+.+| ..+.-.+ -+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD--~~~~Es~-~~ 163 (348)
T d1f7ua2 87 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGESQ-VS 163 (348)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGGG-CC
T ss_pred HHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhccc-cc
Confidence 0 0 01123344455566677788888888888665 2333322 22
Q ss_pred HHHHHHHHHHHHHcCCeEEe
Q psy15223 560 EANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 560 ~~~~~~~f~~l~~kGliyr~ 579 (2492)
......+...|.++|++|..
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~ 183 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHED 183 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred ccchHHHHHHHHhhcccccc
Confidence 33344677777777777643
|
| >d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Riboflavin biosynthesis protein RibD species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=1.1e-10 Score=124.03 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=59.0
Q ss_pred hhhhhhc-cCCc------cchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHH
Q psy15223 1331 NRCFNNL-FEPC------AMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFF 1403 (2492)
Q Consensus 1331 ~RC~~~v-~~~c------~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~ 1403 (2492)
..|..++ .||| +||++||+|+||+|||||+.+++.+. |+..+. ..+|+++|++|+|++||.+|++.||
T Consensus 66 ~~~~lYvTlEPC~~~~~~p~C~~ai~~agi~rVv~g~~dp~~~~-~~~~~~----l~~~~i~V~~gvl~~e~~~l~~~F~ 140 (147)
T d2hxva2 66 RGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVS-GNGVEK----FRNHGIEVIEGVLEEEVKKLCEFFI 140 (147)
T ss_dssp TTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCGGG-CCHHHH----HHTTTCEEEECTTHHHHHHHTHHHH
T ss_pred CCCEEeeccccccccCCChhhhHHHHhcCcceeeeecccccccc-chhhhh----hhcCCCEEEeCcCHHHHHHHHHHHH
Confidence 3454444 6999 66999999999999999999987754 333333 2367899999999999999999999
Q ss_pred hccccc
Q psy15223 1404 IKRRNF 1409 (2492)
Q Consensus 1404 ~~rr~~ 1409 (2492)
+.+|.+
T Consensus 141 ~~~~~k 146 (147)
T d2hxva2 141 TYVTKK 146 (147)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 887654
|
| >d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Cytosine deaminase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.89 E-value=9.1e-11 Score=125.35 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=52.8
Q ss_pred chhhhhh-ccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhcccc
Q psy15223 1330 CNRCFNN-LFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRRN 1408 (2492)
Q Consensus 1330 C~RC~~~-v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr~ 1408 (2492)
+..|..+ ..|||+||++||+|+||+|||||+.++ +++.|..+ ++++...+.+++++||.+|+++||++||+
T Consensus 77 l~~~tlyvTlEPC~mC~~ai~~~gI~rVv~G~~~~-~~~~g~~~-------L~~~~~~v~~v~~~ec~~Ll~~Ff~~rr~ 148 (156)
T d1p6oa_ 77 YKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVN-FKSKGEKY-------LQTRGHEVVVVDDERCKKIMKQFIDERPQ 148 (156)
T ss_dssp HTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSS-CCCTHHHH-------HHHTTCEEEECCCHHHHHHHHHHHHHCHH
T ss_pred ccceEEEeeccCCHHHHHHHHHhCCCEEEEcCCCC-CCcchHHH-------hhcCCeEEeeeCHHHHHHHHHHHHHHccH
Confidence 3456444 479999999999999999999997554 55444322 22222234589999999999999998875
Q ss_pred c
Q psy15223 1409 F 1409 (2492)
Q Consensus 1409 ~ 1409 (2492)
-
T Consensus 149 ~ 149 (156)
T d1p6oa_ 149 D 149 (156)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.86 E-value=8.3e-09 Score=127.87 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=87.1
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHH--HHhCc--------------
Q psy15223 450 PKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIE--KLYGK-------------- 513 (2492)
Q Consensus 450 ~~f~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~--k~~~~-------------- 513 (2492)
++.+|--.-|+|+|++|+||++|-++.|.++|..+..||+|.-..=....|++|-.-+. +..+.
T Consensus 7 ~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (370)
T d1iq0a2 7 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 86 (370)
T ss_dssp EEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred CeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhhhhhh
Confidence 46778889999999999999999999999999999999999855556666776643221 11111
Q ss_pred -------CCCHH----HHHH--------HHHHHHHHHHHHHHHHHHHccccccccCeeecCChHHHHHHHHHHHHHHHcC
Q psy15223 514 -------NLSPI----EIQN--------KARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLNEANELRAFGIIFKKG 574 (2492)
Q Consensus 514 -------~~~~~----e~~~--------~~~~~a~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y~~~~~~~f~~l~~kG 574 (2492)
....+ ++.+ ..++...+....++..+++||+.+ |..+.-.+-.+...+..++..|-++|
T Consensus 87 ~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~f--D~~~~Es~l~~~~~~~~~i~~l~~~~ 164 (370)
T d1iq0a2 87 AYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY--DLLVWESDIVRAGLLQKALALLEQSP 164 (370)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCC--SEEEEHHHHHHTTHHHHHHHHHTTST
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceee--ceeeeecccccccchhhhHhhhhhcc
Confidence 00000 1111 022334455566788999999955 45555444444556778888888999
Q ss_pred CeEEe
Q psy15223 575 YVYHG 579 (2492)
Q Consensus 575 liyr~ 579 (2492)
.+|+.
T Consensus 165 ~~~~~ 169 (370)
T d1iq0a2 165 HVFRP 169 (370)
T ss_dssp TEECC
T ss_pred ceeec
Confidence 99864
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=2.3e-08 Score=123.90 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred ceeeecccchhhhhHHHHHHHHHHhcCCccc---cEEEEeeeEEcCCCceeeeccCCccCcchhhhc-------------
Q psy15223 2122 ADLYLEGSDQHRGWFHSSLLTSIILNKSAPY---KALLTHGFVVDSKGKKMSKSKGNIIKPQKLCNL------------- 2185 (2492)
Q Consensus 2122 ~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pf---k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~------------- 2185 (2492)
.-+|+.|.+|. . +...++....+.|..+. -..+.+|+|. .+|+||||++||+|+.+|++++
T Consensus 252 ~~iyVvd~~Q~-~-h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~-~~g~kMStR~G~~v~l~dll~ea~~~a~~~~~~r~ 328 (370)
T d1iq0a2 252 ETINVVDVRQS-H-PQALVRAALALAGYPALAEKAHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKN 328 (370)
T ss_dssp EEEEEEESSSC-C-CHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccch-H-HHHHHHHHHHHhCCCchhhceeeEEEEEEe-cCCccccccCCCeeEHHHHHHHHHHHHHHHHHhhC
Confidence 34788888887 3 34445555555554433 2356679887 7899999999999999999986
Q ss_pred ------------cChhHHHHHHhccCCCCcccccHHHH
Q psy15223 2186 ------------FGAEILRLWVASTDYSKDLSISNEIL 2211 (2492)
Q Consensus 2186 ------------yGaD~lR~~l~s~~~~~d~~fs~~~l 2211 (2492)
.|.+++||.+++.+..+++.|+++.+
T Consensus 329 ~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~ 366 (370)
T d1iq0a2 329 PDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEA 366 (370)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHH
T ss_pred CCchhHHHHHHHhhhhheehhHhhcCCCCCceECHHHh
Confidence 89999999999999999999998864
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=6.2e-08 Score=105.18 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHH
Q psy15223 1100 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRL 1178 (2492)
Q Consensus 1100 ~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~-~~~~~r~sa~~~L~~il~~l~~l 1178 (2492)
.|..++..+.++.+++.++|++|+|++|++.++.++ ..+|.|++..+||-.... .+..+.+++.+++.++++.++.+
T Consensus 25 ~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~--~~~Nkyi~~~~PWkl~k~~~~~~~~~~vl~~~~~~lr~~~~l 102 (162)
T d1pfva1 25 ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTY 102 (162)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999 569999999998754332 33445567888889999999999
Q ss_pred hcccchhHHHHHHHHccCC
Q psy15223 1179 ISPILSFTSEEAWSIFSDK 1197 (2492)
Q Consensus 1179 LaPilP~~aEeiw~~l~~~ 1197 (2492)
|+||||.+|+++|+.|+..
T Consensus 103 L~P~mP~~s~ki~~~L~~~ 121 (162)
T d1pfva1 103 LKPVLPKLTERAEAFLNTE 121 (162)
T ss_dssp TTTTCHHHHHHHHHHHTSC
T ss_pred HHHHhHHHHHHHHHHhCCC
Confidence 9999999999999999853
|
| >d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Guanine deaminase GuaD species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=5.7e-10 Score=119.66 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=55.8
Q ss_pred hhhh-hhccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecc----cCCCceEEEccccHHHHHHHHHHHHhc
Q psy15223 1331 NRCF-NNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEK----KLNHHTILTGGVMQKQCEKLLKSFFIK 1405 (2492)
Q Consensus 1331 ~RC~-~~v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~----~~~~~~~~~~g~l~~e~~~l~~~f~~~ 1405 (2492)
..|. .+..|||+||++||+|+||+|||||+++++.|+.|+........ ..++.. .+.+++.+||.++|+.|++.
T Consensus 74 ~~~tlyvTlEPC~mC~~ai~~agi~~Vvy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~v~~~~~~e~~~~f~~~~~~ 152 (158)
T d1wkqa_ 74 DDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTI-PFYQVTLTEHLSPFQAWRNF 152 (158)
T ss_dssp TTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSS-CEEECCCTTTTHHHHHHHHC
T ss_pred CCCEEEEEcCCChhHHHHHHhhcCCEEEEEEcCCCccccCchhHHhHHHHhcCcceeec-cEehHHHHHHHHHHHHHHHh
Confidence 4564 44479999999999999999999999999998888765554322 112333 34456677999999988655
Q ss_pred cc
Q psy15223 1406 RR 1407 (2492)
Q Consensus 1406 rr 1407 (2492)
++
T Consensus 153 ~~ 154 (158)
T d1wkqa_ 153 AN 154 (158)
T ss_dssp TT
T ss_pred hC
Confidence 43
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=7.9e-08 Score=104.31 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhcccc-CChHHHHHHHHHHHHHHHHHHHH
Q psy15223 2250 IDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTK-KNSHARRSAQTSIWHINQSLLRL 2328 (2492)
Q Consensus 2250 ~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~-~~~~~r~~~~~~l~~il~~l~~l 2328 (2492)
.|..++..+.++.+.+.++|++|+|++|++.++.++ ..+|.|++..+||-.... .+..+..++++++.++++.+..+
T Consensus 25 ~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~--~~~Nkyi~~~~PWkl~k~~~~~~~~~~vl~~~~~~lr~~~~l 102 (162)
T d1pfva1 25 ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTY 102 (162)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 366788999999999999999999999999999999 569999999888754332 23344567788899999999999
Q ss_pred HhccchHHHHHHHHHcccC
Q psy15223 2329 ISPILSFTSEEAWSIFSDK 2347 (2492)
Q Consensus 2329 LaPi~P~~aEelw~~L~~~ 2347 (2492)
|+||||.+|+++|+.|+..
T Consensus 103 L~P~mP~~s~ki~~~L~~~ 121 (162)
T d1pfva1 103 LKPVLPKLTERAEAFLNTE 121 (162)
T ss_dssp TTTTCHHHHHHHHHHHTSC
T ss_pred HHHHhHHHHHHHHHHhCCC
Confidence 9999999999999999753
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=9e-08 Score=102.76 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHHhccchH
Q psy15223 2256 INITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSF 2335 (2492)
Q Consensus 2256 ~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yle~~K~~l~~~~~~~~~r~~~~~~l~~il~~l~~lLaPi~P~ 2335 (2492)
..+.++.+++.++|++|+|++|++.+++++ ..+|.||+..++|-... .+.++.++++.++.++++.+..+|+||||+
T Consensus 34 ~~~~~~~~~~~~~~e~~~~~~al~~i~~~~--~~~N~yi~~~~PW~l~k-~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~ 110 (152)
T d2d5ba1 34 AEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFK-KEPEEARAVLYRVVEGLRIASILLTPAMPD 110 (152)
T ss_dssp GGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 345678899999999999999999999999 56999999888864422 345566677788889999999999999999
Q ss_pred HHHHHHHHcccC
Q psy15223 2336 TSEEAWSIFSDK 2347 (2492)
Q Consensus 2336 ~aEelw~~L~~~ 2347 (2492)
+|++||+.|+-.
T Consensus 111 ~~~ki~~~Lg~~ 122 (152)
T d2d5ba1 111 KMAELRRALGLK 122 (152)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999753
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=7.8e-08 Score=103.27 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHhhhhhhccccCChHHHHHHHHHHHHHHHHHHHHhcccchh
Q psy15223 1106 INITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLDILKDRLYTTKKNSHARRSAQTSIWHINQSLLRLISPILSF 1185 (2492)
Q Consensus 1106 ~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~~~Kdrl~~~~~~~~~r~sa~~~L~~il~~l~~lLaPilP~ 1185 (2492)
..+.++.+++.++|++|+|++|++.+++++ ..+|.|++..++|-... .+..+.+.+..++.++++.++.+|+||||+
T Consensus 34 ~~~~~~~~~~~~~~e~~~~~~al~~i~~~~--~~~N~yi~~~~PW~l~k-~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~ 110 (152)
T d2d5ba1 34 AEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFK-KEPEEARAVLYRVVEGLRIASILLTPAMPD 110 (152)
T ss_dssp GGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 345678899999999999999999999999 45899999998875432 345566677888888999999999999999
Q ss_pred HHHHHHHHccC
Q psy15223 1186 TSEEAWSIFSD 1196 (2492)
Q Consensus 1186 ~aEeiw~~l~~ 1196 (2492)
+|++||+.|+-
T Consensus 111 ~~~ki~~~Lg~ 121 (152)
T d2d5ba1 111 KMAELRRALGL 121 (152)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999974
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=1.3e-05 Score=97.72 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=94.8
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHH--hc--------------
Q psy15223 1599 RPKFILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKL--YG-------------- 1662 (2492)
Q Consensus 1599 ~~~f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~--~~-------------- 1662 (2492)
+++.+|=-.=|+|+|+||+||++|-++.|+++|..+..||+|.-..=....|.+|-.-+... .+
T Consensus 7 ~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~ 86 (348)
T d1f7ua2 7 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 86 (348)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchhHH
Confidence 45788888999999999999999999999999999999999987777788888775333211 00
Q ss_pred -----------cC---CC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCeeccCChHH
Q psy15223 1663 -----------KN---LS-------------------PIEIQNKARALAYEKIEQQKMDFMRLGILGEWDNSYKTMDFLN 1709 (2492)
Q Consensus 1663 -----------~~---~~-------------------~~e~~~~~~~~~~~~i~~~~~~~~~lGi~~Dw~~~y~T~d~~y 1709 (2492)
.+ .. ..+..+..+......++.+++.+++||+.+| ..+.-.+ .|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD--~~~~Es~-~~ 163 (348)
T d1f7ua2 87 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGESQ-VS 163 (348)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGGG-CC
T ss_pred HHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhccc-cc
Confidence 00 00 1123334445566777888999999999776 2233322 23
Q ss_pred HHHHHHHHHHHHhCCceEEeCccccc
Q psy15223 1710 EANELRAFGIIFKKGYVYHGLKPVNW 1735 (2492)
Q Consensus 1710 ~~~~~~~F~~L~~kGliyr~~~~v~w 1735 (2492)
......+...|.++|++|.....+.|
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~~ga~~~ 189 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHEDKGAVLI 189 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEE
T ss_pred ccchHHHHHHHHhhccccccCCcccc
Confidence 34455788899999999876554433
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=5.9e-06 Score=96.38 Aligned_cols=54 Identities=33% Similarity=0.737 Sum_probs=51.3
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCcc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIP 54 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~ 54 (2492)
|.++|++++++||||||||.+++.+++++++++..+|++|+++|||.|||.+..
T Consensus 161 ~~~~~~~~l~~g~~is~~g~~~~~~~~~~~~~v~~iPldrlllETD~P~l~p~~ 214 (260)
T d1j6oa_ 161 DYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQP 214 (260)
T ss_dssp CHHHHHHHHHHTEEEEECGGGGCTTCHHHHHHHHHHCGGGEEECCCBTSCCCGG
T ss_pred CHHHHHHHHhCCCceeeccccccchHHHHHHHHHhcccceEEEecCCCCCCCcc
Confidence 578999999999999999999999999999999999999999999999998754
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=7.5e-06 Score=95.96 Aligned_cols=55 Identities=51% Similarity=0.979 Sum_probs=51.7
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCccc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPH 55 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~~ 55 (2492)
|.++|++++++||||||+|.++++++..+|++++.+|++|+++|||.|||.|...
T Consensus 160 ~~~~a~~~l~~g~~~s~~g~~~~~~~~~l~~~v~~iPldrlLlETD~P~~~p~~~ 214 (265)
T d1yixa1 160 DRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPH 214 (265)
T ss_dssp CHHHHHHHHTTTCEEEECGGGGSTTCHHHHHHHHHSCGGGEEECCCBTSCCCTTC
T ss_pred ChHHHHHHHHcCCeecCccccccchhHHHHHHHHhcchhceEeecCCcccCcccc
Confidence 5789999999999999999999999999999999999999999999999987543
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=1.4e-05 Score=93.38 Aligned_cols=55 Identities=27% Similarity=0.523 Sum_probs=51.2
Q ss_pred CHHHHHHHHHcCcEEEecccccccccHHHHHHhhhcccCccccccCCCCCCCccc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKNSKILQKVMGSISLKNMLIETDSPYLSPIPH 55 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~etD~~~M~~a~~ 55 (2492)
+.++|++++++|+||||+|.++++++.++++++..+|++|+++|||.|||.+...
T Consensus 162 ~~~~~~~~l~~g~~~si~~~~~~~~~~~~~~~v~~iPldriL~ETD~P~~~~~~~ 216 (259)
T d1zzma1 162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGF 216 (259)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTCSHHHHHHHSCGGGEEECCCBTSSCCTTC
T ss_pred CHHHHHHHHHcCCCccccccccccchHHHHHHHHhhccceEEEecCCCCcCCCcC
Confidence 5689999999999999999999999999999999999999999999999977543
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=4e-05 Score=89.14 Aligned_cols=56 Identities=29% Similarity=0.470 Sum_probs=50.8
Q ss_pred CHHHHHHHHHcCcEEEecccccccc-cHHHHHHhhhcccCccccccCCCCCCCcccc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKN-SKILQKVMGSISLKNMLIETDSPYLSPIPHR 56 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~etD~~~M~~a~~~ 56 (2492)
+.++|++++++|+|+||+|.+++.+ +.++++++..+|++|+++|||.|||.|....
T Consensus 157 ~~~~~~~~~~~g~~~s~~g~~~~~~~~~~~~~~~~~iPldrlllETD~P~~~p~~~~ 213 (260)
T d1xwya1 157 TREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLT 213 (260)
T ss_dssp CHHHHHHHHHTTCEEEECGGGGCTTTSHHHHHHGGGSCGGGEEECCCTTSCCCTTCT
T ss_pred cHHHHHHhhhhccccccCccccchhhHHHHHHHHHhhhhhheeeecCCCCCCCcccc
Confidence 5789999999999999999999876 6789999999999999999999999886543
|
| >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Deoxycytidylate deaminase-like domain: Deoxycytidylate deaminase species: Bacteriophage T4 [TaxId: 10665]
Probab=97.31 E-value=7.8e-06 Score=90.53 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=50.9
Q ss_pred chhhh-hhccCCccchhHHHHHhccCeEEeCCCCcCCCcccceEeeeecccCCCceEEEccccHHHHHHHHHHHHhccc
Q psy15223 1330 CNRCF-NNLFEPCAMCAGAIIHVRLGEIIYGTPSFKTGACGSIINLFQEKKLNHHTILTGGVMQKQCEKLLKSFFIKRR 1407 (2492)
Q Consensus 1330 C~RC~-~~v~~~c~mC~~a~~~~~i~~vv~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~l~~e~~~l~~~f~~~rr 1407 (2492)
+..|. .+..|||+||+++|+++||++|||+.+.+.....|. +++.. ..++++ .+..+|+.+|..++|++-+
T Consensus 120 ~~~~~ly~t~~PC~~Ca~~i~~~gI~~V~~~~~~~~~~~~~~--~~l~~----~gI~v~-~i~~~~~~~l~~~~~~~~~ 191 (193)
T d1vq2a_ 120 IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWD--DILRN----AGIEVF-NVPKKNLNKLNWENINEFC 191 (193)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCCTTTT--HHHHH----TTCEEE-ECCGGGCCSSCGGGCCCBC
T ss_pred CCCceEEecCCCcHHHHHHHHhccCCEEEEEeCCCCccHHHH--HHHHH----CCCEEE-ecCHHHHHHHHHHHHHHHh
Confidence 44553 344699999999999999999999987654432222 22222 346886 5899999999888877654
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.92 E-value=0.0002 Score=85.08 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=66.9
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Q psy15223 454 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 533 (2492)
Q Consensus 454 l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~ 533 (2492)
++==||-|||.||||||++.++.+.++| ...|.-++-+ |.. ++.. ...++++
T Consensus 3 vtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLRi---dDt----------------D~~R-------~~~~~~~ 54 (305)
T d1j09a2 3 VTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRI---EDT----------------DRAR-------YVPGAEE 54 (305)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECB---CCC----------------CTTS-------CCTTHHH
T ss_pred EEecCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEe---CcC----------------CCcc-------CchHHHH
Confidence 4445899999999999999999999999 3456544443 322 2221 1124678
Q ss_pred HHHHHHHHccccccccC---------eeecCChHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 534 QQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 534 ~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.+.++++-||+ +||. .|+. -++...-...+.+|.++|++|.-
T Consensus 55 ~I~~dL~wLgi--~wD~~p~~~~~~~~~~q--S~r~~~y~~~~~~Li~~g~aY~C 105 (305)
T d1j09a2 55 RILAALKWLGL--SYDEGPDVGGPHGPYRQ--SERLPLYQKYAEELLKRGWAYRA 105 (305)
T ss_dssp HHHHHHHHTTC--CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhc--CcccCCcCCCCCcceee--ecchhHHHHHHHHHHHcCCeeec
Confidence 99999999998 7764 2332 24455566788899999999985
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.00023 Score=84.60 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q psy15223 1603 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 1682 (2492)
Q Consensus 1603 ~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i 1682 (2492)
+++==+|-|||.||+|||++.++.+.++| ...|.-++.+ |.+- +.. ...++.
T Consensus 2 vvtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLRi---dDtD----------------~~R-------~~~~~~ 53 (305)
T d1j09a2 2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRI---EDTD----------------RAR-------YVPGAE 53 (305)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECB---CCCC----------------TTS-------CCTTHH
T ss_pred eEEecCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEe---CcCC----------------Ccc-------CchHHH
Confidence 34556899999999999999999999998 3456544443 4332 211 112466
Q ss_pred HHHHHHHHHhcccccccC---------eeccCChHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1683 EQQKMDFMRLGILGEWDN---------SYKTMDFLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1683 ~~~~~~~~~lGi~~Dw~~---------~y~T~d~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
+.+.++++.||+ +||. .|..+ ++...-...+.+|.++|++|.-
T Consensus 54 ~~I~~dL~wLgi--~wD~~p~~~~~~~~~~qS--~r~~~y~~~~~~Li~~g~aY~C 105 (305)
T d1j09a2 54 ERILAALKWLGL--SYDEGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYRA 105 (305)
T ss_dssp HHHHHHHHHTTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhc--CcccCCcCCCCCcceeee--cchhHHHHHHHHHHHcCCeeec
Confidence 788999999998 7764 23322 4455556778899999999986
|
| >d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: mono-domain cytidine deaminase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0039 Score=64.16 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=53.6
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE------cCCChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV------TLEPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~------t~EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. +||+|+ +|.|-.......+.|||.+||-+|......... ...+.+ ..-||-+|-..|.+.
T Consensus 29 S~f~VGAAl~t~~G~I~-~G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~--~~~vv~~~~~~~~~sPCG~CRQ~l~E~ 105 (141)
T d1r5ta_ 29 SHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGW--KCMVICGDSEDQCVSPCGVCRQFINEF 105 (141)
T ss_dssp TCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCC--CEEEEEESCSSSCCCCCHHHHHHHHTT
T ss_pred cCCcEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHhcCCccc--eEEEEeecCCCCCCCchHHHHHHHHHh
Confidence 4789999999 688866 799987776677999999999999876543211 122222 135999999999997
Q ss_pred CC
Q psy15223 137 RL 138 (2492)
Q Consensus 137 gi 138 (2492)
+-
T Consensus 106 ~~ 107 (141)
T d1r5ta_ 106 VV 107 (141)
T ss_dssp SC
T ss_pred cC
Confidence 64
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0026 Score=74.53 Aligned_cols=92 Identities=14% Similarity=0.223 Sum_probs=64.9
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Q psy15223 454 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 533 (2492)
Q Consensus 454 l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i~ 533 (2492)
++==+|.|||.||+|||++.++.=.++|- ..|.-++-+ | +.+++. ...++.+
T Consensus 4 ~tRFAPsPtG~lHiG~~rtal~n~~~Ak~--~~G~~iLRi---e----------------DtD~~R-------~~~~~~~ 55 (286)
T d1nzja_ 4 IGRFAPSPSGELHFGSLIAALGSYLQARA--RQGRWLVRI---E----------------DIDPPR-------EVPGAAE 55 (286)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHHH--TTCEEEEEE---C----------------CSCGGG-------SCTTHHH
T ss_pred eEeeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---C----------------CCCCCc-------CCHHHHH
Confidence 34457999999999999999998888884 356544432 2 333332 1124778
Q ss_pred HHHHHHHHccccccccC-eeecCC--hHHHHHHHHHHHHHHHcCCeEEe
Q psy15223 534 QQKMDFMRLGILGEWDN-SYKTMD--FLNEANELRAFGIIFKKGYVYHG 579 (2492)
Q Consensus 534 ~~~~~~~~lGi~~Dw~~-~y~T~d--~~y~~~~~~~f~~l~~kGliyr~ 579 (2492)
.+.++|+-||+ +|+. +|.-.+ +.| ...+.+|.++|++|.-
T Consensus 56 ~I~~dL~wlgl--~~d~~~~~QS~r~~~Y----~~~~~~L~~~g~aY~C 98 (286)
T d1nzja_ 56 TILRQLEHYGL--HWDGDVLWQSQRHDAY----REALAWLHEQGLSYYC 98 (286)
T ss_dssp HHHHHHHHTTC--CCSSCCEEGGGCHHHH----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhh--ccccccchhHHHHHHH----HHHHHHHHHcCCcccc
Confidence 99999999999 7774 555443 334 4578899999999864
|
| >d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: mono-domain cytidine deaminase species: Bacillus anthracis [TaxId: 1392]
Probab=96.03 E-value=0.0086 Score=60.13 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=53.5
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcC------CChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTL------EPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~------EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. +||+|+ .|.|-.......+.|||.+||-+|...... .+ ..+.+.. -||-+|-..|.+.
T Consensus 22 S~f~VGAal~~~~G~i~-~G~NvEn~s~~~~~CAEr~Ai~~a~~~g~~-~~---~~i~v~~~~~~~~~PCG~CRQ~l~E~ 96 (124)
T d2d30a1 22 SKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDK-EF---VAIAIVADTKRPVPPCGACRQVMVEL 96 (124)
T ss_dssp TCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CE---EEEEEEESCSSCCCCCHHHHHHHHHH
T ss_pred cCCcEEEEEEeCCCCEE-EEEeeccccCCcccCHHHHHHHHHHhcCCc-ee---EEEEEEcCCCCccCCchHHHHHHHHh
Confidence 4789999999 688865 899988776677899999999999886432 22 2344443 5999999999986
Q ss_pred C
Q psy15223 137 R 137 (2492)
Q Consensus 137 g 137 (2492)
+
T Consensus 97 ~ 97 (124)
T d2d30a1 97 C 97 (124)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: Two-domain cytidine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0047 Score=63.17 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=64.6
Q ss_pred cccccCCCCCCCcccccccccc-cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCc-ccCCCe
Q psy15223 41 MLIETDSPYLSPIPHRAKLALI-AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNY-RFSKNY 117 (2492)
Q Consensus 41 ~~~etD~~~M~~a~~~a~~~~~-~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~-~l~~~~ 117 (2492)
....+|.+.+..|.+.+.+|.. -.+.||||+|. +||+|+ .|.|-.....+++.|||..||.++....... .+. ..
T Consensus 33 ~~~~~~d~L~~~A~~aa~~ayaPYS~~~vGaal~~~~G~i~-~G~nvEnaa~~~slcAE~~Ai~~av~~G~~~~~I~-~~ 110 (144)
T d1alna2 33 GYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQ-RA 110 (144)
T ss_dssp CCCCCSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEE-EE
T ss_pred ccccCHHHHHHHHHHHHHhccCCCCCCcceEEEEeCCCCEE-EEeeeeccccCCCccHHHHHHHHHHHcCCCccCEE-EE
Confidence 3445666677777777777754 35789999888 688877 9999888778999999999999887654221 111 12
Q ss_pred EEEE----cCCChHhHHHHHHHhCC
Q psy15223 118 KIYV----TLEPCAMCAGAIIHVRL 138 (2492)
Q Consensus 118 ~ly~----t~EPC~mC~~ai~~~gi 138 (2492)
.+.. -..||.+|-..|..-+.
T Consensus 111 v~ve~~~~~is~~~~~r~~l~~~~~ 135 (144)
T d1alna2 111 VLAEKADAPLIQWDATSATLKALGC 135 (144)
T ss_dssp EEEECTTCSSCCHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 2333 12456677666665543
|
| >d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PUA domain-like superfamily: PUA domain-like family: YggJ N-terminal domain-like domain: Hypothetical protein TTHA0657 (TT1575) species: Thermus thermophilus [TaxId: 274]
Probab=95.90 E-value=0.0054 Score=48.62 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=40.0
Q ss_pred eCcchhhHH-HHHhhcCCCEEEEEeCCCcEEEEEEEeeccceEEEEEeee
Q psy15223 221 LPDNIVNHL-NVLRVKYKNTIILFNGFGGEYIAKLISIKKKILIQIISFL 269 (2492)
Q Consensus 221 L~~~~~~Hl-~VlR~~~gd~i~v~dg~g~~~~a~i~~~~~~~~~~~~~~~ 269 (2492)
|+-++.+|+ .|||.+.||.+.|||+ ..+..|+|.+......-+++++.
T Consensus 12 lpl~e~rhlvevlra~vgdrftvfd~-~realaevvdlgpp~ryrileer 60 (63)
T d1v6za1 12 LPLRETRHLVEVLRARVGDRFTVFDG-EREALAEVVDLGPPLRYRVLEER 60 (63)
T ss_dssp CCHHHHHHHHTTSCCCTTCEEEEECS-SCEEEEEEEECCSSCEEEEEEEE
T ss_pred eechhcchHHHHHHhccCcceEEecc-hHHHHHHHHhcCCchhhhhhhhh
Confidence 566889999 9999999999999998 58999999988766665666543
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0047 Score=73.60 Aligned_cols=94 Identities=27% Similarity=0.300 Sum_probs=66.2
Q ss_pred EEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCCchHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH
Q psy15223 453 ILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKI 532 (2492)
Q Consensus 453 ~l~dgPPyanG~lHiGHa~n~ilkDii~Ry~~m~G~~v~~~~GwD~hGlpiE~~a~k~~~~~~~~~e~~~~~~~~a~~~i 532 (2492)
|.+==.|-|||.||||||++.++.=.++|- ..|.-++-+ | +.++.. ...++.
T Consensus 20 v~tRFAPSPTG~LHiG~~rtal~n~l~Ak~--~~G~fiLRI----------E---------DtD~~R-------~~~~~~ 71 (331)
T d1gtra2 20 VHTRFPPEPNGYLHIGHAKSICLNFGIAQD--YKGQCNLRF----------D---------DTNPVK-------EDIEYV 71 (331)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEE----------C---------CCCGGG-------CCHHHH
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe----------C---------cCCCCc-------ccchHH
Confidence 445567899999999999999999988885 345544433 2 444433 234577
Q ss_pred HHHHHHHHHcccccccc-CeeecCChHHHHHHHHHHHHHHHcCCeEE
Q psy15223 533 EQQKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYH 578 (2492)
Q Consensus 533 ~~~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~f~~l~~kGliyr 578 (2492)
+.+.++|+-||+ +|| .+++-.+ .-..=+..+.+|.++|++|.
T Consensus 72 ~~I~~dL~WLGl--~wD~~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 114 (331)
T d1gtra2 72 ESIKNDVEWLGF--HWSGNVRYSSD--YFDQLHAYAIELINKGLAYV 114 (331)
T ss_dssp HHHHHHHHHTTC--CCSSSCEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhc--cccccceecch--HHHHHHHHHHhhhhcCCccc
Confidence 899999999999 676 3444333 22333457789999999985
|
| >d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: mono-domain cytidine deaminase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.011 Score=60.20 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=56.1
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc------CCChHhHHHHHHHh
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT------LEPCAMCAGAIIHV 136 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t------~EPC~mC~~ai~~~ 136 (2492)
.+.+|||++. +||+|. .|.|-.......+.|||.+||-+|...... .+. ..+.++ .-||-+|-..|.+.
T Consensus 24 S~f~VGAa~~~~dG~i~-~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~--~~~~~~~~~~~~~~PCG~CRQ~l~E~ 99 (136)
T d2fr5a1 24 SRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYK-DFR--AIAISSDLQEEFISPCGACRQVMREF 99 (136)
T ss_dssp TCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEE--EEEEEESCSSSCCCCCHHHHHHHHHT
T ss_pred cCCcEEEEEEeCCCCEE-EEEeecccccccccchhheeeeeeeccCCc-cEE--EEEeecccCCCCCCcchhhhHHHHhh
Confidence 4789999999 688876 899987766677899999999998875432 221 233333 24999999999998
Q ss_pred CCceEEEe
Q psy15223 137 RLGEIIYG 144 (2492)
Q Consensus 137 gi~rvv~g 144 (2492)
+-...++.
T Consensus 100 ~~~~~i~~ 107 (136)
T d2fr5a1 100 GTDWAVYM 107 (136)
T ss_dssp CSSCEEEE
T ss_pred CCCceEEE
Confidence 75443333
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.004 Score=72.78 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=64.2
Q ss_pred EEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q psy15223 1604 LHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEKIE 1683 (2492)
Q Consensus 1604 i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~i~ 1683 (2492)
++==+|.|||.||+|||++.++.=.+||- ..|.-++.+ |. .+++- ...++.+
T Consensus 4 ~tRFAPsPtG~lHiG~~rtal~n~~~Ak~--~~G~~iLRi---eD----------------tD~~R-------~~~~~~~ 55 (286)
T d1nzja_ 4 IGRFAPSPSGELHFGSLIAALGSYLQARA--RQGRWLVRI---ED----------------IDPPR-------EVPGAAE 55 (286)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHHH--TTCEEEEEE---CC----------------SCGGG-------SCTTHHH
T ss_pred eEeeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---CC----------------CCCCc-------CCHHHHH
Confidence 44568999999999999999998888874 356544433 32 22221 1124677
Q ss_pred HHHHHHHHhcccccccC-eeccCC--hHHHHHHHHHHHHHHhCCceEEe
Q psy15223 1684 QQKMDFMRLGILGEWDN-SYKTMD--FLNEANELRAFGIIFKKGYVYHG 1729 (2492)
Q Consensus 1684 ~~~~~~~~lGi~~Dw~~-~y~T~d--~~y~~~~~~~F~~L~~kGliyr~ 1729 (2492)
.+.++|+-||+ +|+. +|.-++ +.| ...+.+|.++|++|.-
T Consensus 56 ~I~~dL~wlgl--~~d~~~~~QS~r~~~Y----~~~~~~L~~~g~aY~C 98 (286)
T d1nzja_ 56 TILRQLEHYGL--HWDGDVLWQSQRHDAY----REALAWLHEQGLSYYC 98 (286)
T ss_dssp HHHHHHHHTTC--CCSSCCEEGGGCHHHH----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhh--ccccccchhHHHHHHH----HHHHHHHHHcCCcccc
Confidence 88999999999 7774 454443 334 4577889999999864
|
| >d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: Two-domain cytidine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0075 Score=61.53 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=53.2
Q ss_pred cCCcceeeeee-eCCEEEEEEEcCCc--cCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEcCCChHhHHHHHHHh
Q psy15223 63 AGEVPVGAVLV-KNNLVISYGYNQQI--TRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVTLEPCAMCAGAIIHV 136 (2492)
Q Consensus 63 ~~~~pvGaviv-~~~~ii~~g~n~~~--~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t~EPC~mC~~ai~~~ 136 (2492)
-.+.+|||++. .+|+|. .|.|-.. ..-..+.|||.+||-++...... .+ .+++++.-||-+|-.-|.+.
T Consensus 68 yS~F~VGAa~~~~~G~iy-~G~NvE~~nas~~~sicAEr~Ai~~a~~~G~~-~i---~~i~v~~sPCG~CRQ~m~E~ 139 (150)
T d1alna1 68 LSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEK-AL---AAITVNYTPCGHCRQFMNEL 139 (150)
T ss_dssp TTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCC-CE---EEEEESSCCCHHHHHHHTTB
T ss_pred CCCCceEEEEEeCCCCEE-EEEeecccCCccCCCCCHHHHHHHHHHhcCCC-ce---eEEEEEcCCChhHHHHHHHh
Confidence 34799999999 678855 8999763 23356889999999998775432 22 46889999999999888764
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.013 Score=69.80 Aligned_cols=95 Identities=26% Similarity=0.277 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCcccchHhhhhHHHHHHHHHHHHCCCccccccccccCChHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15223 1602 FILHDGPPYANGDIHIGHAVNKILKDIIVKFYNMDGFDAQYVPGYDCHGMPIEIQIEKLYGKNLSPIEIQNKARALAYEK 1681 (2492)
Q Consensus 1602 f~i~~~pPy~nG~lHlGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~hGlPie~~a~k~~~~~~~~~e~~~~~~~~~~~~ 1681 (2492)
=+++==.|-|||.||+||+++.++.=.+||- ..|.=++.+= +.++.. ...++
T Consensus 19 ~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak~--~~G~fiLRIE-------------------DtD~~R-------~~~~~ 70 (331)
T d1gtra2 19 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQD--YKGQCNLRFD-------------------DTNPVK-------EDIEY 70 (331)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEEC-------------------CCCGGG-------CCHHH
T ss_pred eEEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeC-------------------cCCCCc-------ccchH
Confidence 3466678999999999999999999888875 3555544442 333322 23456
Q ss_pred HHHHHHHHHHhccccccc-CeeccCChHHHHHHHHHHHHHHhCCceEE
Q psy15223 1682 IEQQKMDFMRLGILGEWD-NSYKTMDFLNEANELRAFGIIFKKGYVYH 1728 (2492)
Q Consensus 1682 i~~~~~~~~~lGi~~Dw~-~~y~T~d~~y~~~~~~~F~~L~~kGliyr 1728 (2492)
.+.+.++|+-||+ +|| .+++-++ ....=+....+|.++|++|.
T Consensus 71 ~~~I~~dL~WLGl--~wD~~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 114 (331)
T d1gtra2 71 VESIKNDVEWLGF--HWSGNVRYSSD--YFDQLHAYAIELINKGLAYV 114 (331)
T ss_dssp HHHHHHHHHHTTC--CCSSSCEEGGG--GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhc--cccccceecch--HHHHHHHHHHhhhhcCCccc
Confidence 7788999999999 676 3444433 22233456779999999984
|
| >d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: mono-domain cytidine deaminase species: Bacillus subtilis [TaxId: 1423]
Probab=95.02 E-value=0.02 Score=57.84 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=52.9
Q ss_pred CCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEEc-----CCChHhHHHHHHHhC
Q psy15223 64 GEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYVT-----LEPCAMCAGAIIHVR 137 (2492)
Q Consensus 64 ~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~t-----~EPC~mC~~ai~~~g 137 (2492)
.+.+|||++. .+|+|. +|.|-.......+.+||.+||-+|...... .+ .+...++ ..||-+|-..|.+.+
T Consensus 22 S~f~VGAa~~~~~G~i~-~G~NvEnas~~~~~CAEr~Ai~~a~~~g~~-~~--~~i~v~~~~~~~~sPCG~CRQ~l~E~~ 97 (130)
T d1uwza_ 22 SKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDT-EF--QMLAVAADTPGPVSPCGACRQVISELC 97 (130)
T ss_dssp TCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCC-CE--EEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred cCCcEEEEEEeCCCCEE-EEeeeccccccccccceehhhHHHHHhhhc-ce--eeEEEEcCCCCccCcCHHHHHHHHHhC
Confidence 4789999999 678876 899988776677889999999998776532 22 1222222 269999999999874
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.0077 Score=70.70 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=46.2
Q ss_pred CHHHHHHHHHcCcEEEecccccccc------cHHHHHHhhhcccCccccccCCCCCCCc
Q psy15223 1 SLDVAREIIELGFYISFSGIVTFKN------SKILQKVMGSISLKNMLIETDSPYLSPI 53 (2492)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~etD~~~M~~a 53 (2492)
+.++|++++++|+||||+|..++.. .+.+++++...|++|++.+||.||+.+.
T Consensus 191 ~~e~~~~~~~~G~~i~~~g~~~~~~~~~~~~~~~~~~lv~~~p~drilleTD~p~~~p~ 249 (291)
T d1bf6a_ 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHL 249 (291)
T ss_dssp CHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGS
T ss_pred CHHHHHHHHhcCeeEEecccccccCCcHHHhHHHHHHHHHhCCchhEEEecCCCCcccc
Confidence 4689999999999999999887643 3568999999999999999999998764
|
| >d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: Cytidine deaminase domain: Blasticidin-S deaminase species: Aspergillus terreus [TaxId: 33178]
Probab=94.28 E-value=0.011 Score=58.92 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=49.0
Q ss_pred cCCcceeeeee-eCCEEEEEEEcCCccCCCCCCcHHHHHHHHHHHhccCcccCCCeEEEE--c-----CCChHhHHHHHH
Q psy15223 63 AGEVPVGAVLV-KNNLVISYGYNQQITRNDPTAHAEIIALRMASKLLNNYRFSKNYKIYV--T-----LEPCAMCAGAII 134 (2492)
Q Consensus 63 ~~~~pvGaviv-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~~~ly~--t-----~EPC~mC~~ai~ 134 (2492)
..+.+|||++. +||+|+ +|.|-.+.. ...|||.+||-+|...... .+. .+.+ . .-||-+|-..|.
T Consensus 23 ~s~f~VGAa~l~~~G~i~-~G~NvEN~s--~glCAEr~Ai~~a~~~g~~-~i~---~i~~v~~~~~~~~sPCG~CRQ~l~ 95 (123)
T d2z3ga1 23 SEDYSVASAALSSDGRIF-TGVNVYHFT--GGPCAELVVLGTAAAAAAG-NLT---CIVAIGNENRGILSPCGRCRQVLL 95 (123)
T ss_dssp CSSSCEEEEEEETTSCEE-EEECCCCTT--TCCCHHHHHHHHHHHTTCC-CEE---EEEEEETTTTEEECCCHHHHHHHH
T ss_pred CCCCCEEEEEEeCCCCEE-EEEcccCCC--CccchhhhHhhhhhhcCCC-ceE---EEEEEEcCCCCcCCccHHHHHHHH
Confidence 34689999988 688877 899976432 3679999999998876432 221 2222 1 359999999999
Q ss_pred HhC
Q psy15223 135 HVR 137 (2492)
Q Consensus 135 ~~g 137 (2492)
+.+
T Consensus 96 Ef~ 98 (123)
T d2z3ga1 96 DLH 98 (123)
T ss_dssp HHC
T ss_pred HhC
Confidence 974
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.90 E-value=0.029 Score=66.97 Aligned_cols=69 Identities=22% Similarity=0.182 Sum_probs=46.9
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCc-cccccCCCccCcchhhhhcChhhHHHHhh
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILRLWVA 1046 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~-KMSKS~GN~i~p~~ii~~yGaD~lRl~l~ 1046 (2492)
+-+|+...|.||.. |-.+..-++-.-...+..++++-++...+|+ |||||.||.|+..| .++.++=.+.
T Consensus 182 l~~~~vp~G~DQ~~---~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~i~~Ki~ 251 (343)
T d1h3fa1 182 IRADVEMGGTDQRF---NLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLM 251 (343)
T ss_dssp HTCSEEEEEGGGHH---HHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHH
T ss_pred hcccccccccchHH---HHHHHHHHHhhcCccccceeeccccccccccchhhcccccceeeec-----hhHHHHHHHh
Confidence 34789999999963 3334333333333345677888888888995 99999999998764 3555543343
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=92.82 E-value=0.033 Score=65.23 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=41.3
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ 2181 (2492)
+-+|+.++|.||.++.....=+... +.+..| ..+++..++.+.+|+|||||.||.|+..+
T Consensus 184 ~~~~iqiGGsDQ~~Ni~~Grdl~~~-~~~~~~-~~~it~pLl~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 184 LNCKIQVGGSDQWGNITSGIELMRR-MYGQTD-AYGLTIPLVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHH-HHCCCC-CEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred hhchhhhhccccHHHhhhhhhhhhh-hccccc-ceEEecccccchhhhhhhhcCCCCeeeec
Confidence 4589999999998644322222111 123222 45667778888999999999999998765
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.24 E-value=0.039 Score=65.86 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=47.8
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCc-eeeeccCCccCcchhhhccChhHHHHHHhc
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQKLCNLFGAEILRLWVAS 2197 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~-KMSKS~GNvi~p~~ii~~yGaD~lR~~l~s 2197 (2492)
+-+|+..+|.||.. |-.+..-++-.-.-.+...+++-++...+|. |||||.||.|+..| .++.++=.+.+
T Consensus 182 l~~~~vp~G~DQ~~---~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~i~~Ki~~ 252 (343)
T d1h3fa1 182 IRADVEMGGTDQRF---NLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMR 252 (343)
T ss_dssp HTCSEEEEEGGGHH---HHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred hcccccccccchHH---HHHHHHHHHhhcCccccceeeccccccccccchhhcccccceeeec-----hhHHHHHHHhc
Confidence 34789999999973 3344433333223334567778888888994 99999999998775 46666544444
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=91.81 E-value=0.058 Score=63.06 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=40.8
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+-+|+.++|+||-.+.....=+.-. ..+..| .-+++.-++.+.+|+|||||.||.|+.++
T Consensus 184 ~~~~iqiGGsDQ~~Ni~~Grdl~~~-~~~~~~-~~~it~pLl~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 184 LNCKIQVGGSDQWGNITSGIELMRR-MYGQTD-AYGLTIPLVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHH-HHCCCC-CEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred hhchhhhhccccHHHhhhhhhhhhh-hccccc-ceEEecccccchhhhhhhhcCCCCeeeec
Confidence 4589999999998533222212221 123333 45667777788999999999999998765
|
| >d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: AF1056-like domain: Uncharacterized protein VCA1059 species: Vibrio cholerae [TaxId: 666]
Probab=88.35 E-value=0.71 Score=49.23 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=86.6
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEec-CCCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQAL-PENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKN 1464 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~-~k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~ 1464 (2492)
|-|.==|+.+...||-+ |++-.+.|.+.- |.+. ..|.+.-.+-.-.....++. +-.
T Consensus 26 GRmDvL~R~v~salflShgiR~Dv~v~L~L~g~p~p~--------------r~I~f~g~~l~~l~p~dErs------~a~ 85 (201)
T d2qwva1 26 CHTEILAHCMMNSLFTAQSHREDVVIHLVLESTRDYS--------------RTITVEANEISDVGGFHEAA------LIA 85 (201)
T ss_dssp SCTHHHHHHHHHHHBCSSSBCSSEEEEEEEEECSSSC--------------EEEEEETTTC----CCSHHH------HHH
T ss_pred cchhHHHHHHHHHHHHhcCCccCeEEEEEECCCCCCC--------------eEEEEecccccCCCchhHHH------HHH
Confidence 56777899999999987 899998877753 4444 23444433333222212221 223
Q ss_pred HHHHHHhhhCCCC-------CCeec-cCCChhHHHhccc-ccceEEeccCCcccccccccCCCCCceEEEecCCCCCCHH
Q psy15223 1465 IIISATEQSGRNI-------LPVLA-PNIYFNNWLISKI-SCARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEK 1535 (2492)
Q Consensus 1465 i~~~a~~Q~~r~~-------~p~i~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~ 1535 (2492)
.+..|.+...... -|-|. .-.+|++.+..+. ....++++++|.+... ...+.+.+++.|=-=||+++
T Consensus 86 ~I~kaL~~~~~~~~~~~~e~~pGi~~~~~~~e~~l~e~~e~~~~~~Lde~G~~i~~----~~~~~~~~FILsDh~~~~~~ 161 (201)
T d2qwva1 86 LLVKALDASVGMGKEQTRVVQPGLTVRTISFEALLGELAEHHSLYMMDKKGDSIRD----IKIGPNPCFILTDHIPMPKK 161 (201)
T ss_dssp HHHHHHHHTTTCCTTCEEEEETTEEEECCCHHHHHHHHHTTSEEEEEEEEEEETTT----SCCCSSEEEEECC-------
T ss_pred HHHHHhhccCCCCCcceeEeCCCEEEeCCCHHHHHHHHhcCCcEEEECCCCCchhh----ccCCCCCEEEEeCCCCCCHH
Confidence 4444554443322 12221 3347888776652 3456788887765432 23345678999999999999
Q ss_pred HHHHHHHcCCeEeecCCccceeeccchh
Q psy15223 1536 EENLAYECGVIILSLGKRILRTETASLV 1563 (2492)
Q Consensus 1536 E~~~~~~~gf~~vsLG~rILR~ETA~~~ 1563 (2492)
|.++|+..|+..+||||+.|=|..+...
T Consensus 162 e~~~L~~~g~~~iSLGp~~L~ashcI~i 189 (201)
T d2qwva1 162 SGNSMKRLGVEKISLGPKMLFASQCVTL 189 (201)
T ss_dssp ---CTTTTTCEEEECCSSCCCHHHHHHH
T ss_pred HHHHHHhcCCeeEeeccHHHHHhHHHHH
Confidence 9999999999999999999988766543
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.88 E-value=0.12 Score=60.27 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=30.8
Q ss_pred CceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCc-eeeeccCCccCcch
Q psy15223 2121 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2121 P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~-KMSKS~GNvi~p~~ 2181 (2492)
-+|+.++|.||.. +..+..-+ ..+ ....+.|.++...+|+ |||||.||.|...|
T Consensus 163 ~~~~~~~G~DQ~~---~~~l~rdl--~~~--~~~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 163 GVDVAVGGMEQRK---IHMLAREL--LPK--KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp TCSEEEEEGGGHH---HHHHHHHH--SSS--CCEEEEECCCCCTTCCC-------CSCBTTC
T ss_pred CcceeccchhhHH---HHHHhhhc--ccc--cceecccccccCcccccccccccccccccCC
Confidence 3689999999963 33332222 222 3456777788888995 99999999998764
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.42 E-value=0.13 Score=59.98 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=30.9
Q ss_pred CeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCc-cccccCCCccCcch
Q psy15223 971 PADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGK-KMSKSKGNIIKPQK 1031 (2492)
Q Consensus 971 p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~-KMSKS~GN~i~p~~ 1031 (2492)
-+|+.+.|.||.. +-.+..- .+ . .....+.|.++...+|+ |||||.||+|...|
T Consensus 163 ~~~~~~~G~DQ~~---~~~l~rd-l~-~--~~~~~~~~~~l~gldG~~KMSKS~~n~I~L~D 217 (306)
T d1j1ua_ 163 GVDVAVGGMEQRK---IHMLARE-LL-P--KKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (306)
T ss_dssp TCSEEEEEGGGHH---HHHHHHH-HS-S--SCCEEEEECCCCCTTCCC-------CSCBTTC
T ss_pred CcceeccchhhHH---HHHHhhh-cc-c--ccceecccccccCcccccccccccccccccCC
Confidence 4789999999963 3333222 22 2 23456777788888996 99999999997654
|
| >d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: AF1056-like domain: Uncharacterized protein AF1056 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.86 E-value=2.5 Score=44.67 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=93.7
Q ss_pred cccHHHHHHHHHHHHhc---cccceeEEEEecC-CCchHHHHHHHhhhcCccEEEEEecccccccchhhHhHHHHHHHHH
Q psy15223 1389 GVMQKQCEKLLKSFFIK---RRNFVKNKIQALP-ENRKFDLIIEKSVELGVKIIQPIITNRCIIQLNNERIIKKRIRWKN 1464 (2492)
Q Consensus 1389 g~l~~e~~~l~~~f~~~---rr~~~~~l~~a~~-k~~~~~~~l~k~tElGv~~i~p~~~~rs~~~~~~~~~~~~~~r~~~ 1464 (2492)
|=|.==|+.+...||-+ |++-++.+.+.-+ .+.| .|.+.-++=.-...+. +. +-.
T Consensus 25 GRmDVl~R~v~aAlflShgiR~Dv~v~l~L~g~p~p~r--------------~I~f~G~~lk~l~pdE-rS------ia~ 83 (194)
T d2qmma1 25 GRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPK--------------SILIKGDEVRRMSPDE-RN------VAG 83 (194)
T ss_dssp TSHHHHHHHHHHHHEETTEECTTEEEEEEECCSSSCCE--------------EEEEETTTCCSCCSSH-HH------HHH
T ss_pred CceehhhHHHHHHHHHhcCccCCcEEEEEEcCCCCCCe--------------eEEEeccccccCCccH-HH------HHH
Confidence 55777799999999988 8999888877433 3332 3433333322222322 11 122
Q ss_pred HHHHHHhhhCCC----CCCee-ccCCChhHHHhcccc-cceEEeccCCcccccccccCCCCCceEEEecCCCCCCHHHHH
Q psy15223 1465 IIISATEQSGRN----ILPVL-APNIYFNNWLISKIS-CARILLSPRGRKKLSCWANNQSPQEVELLIGPEGGFTEKEEN 1538 (2492)
Q Consensus 1465 i~~~a~~Q~~r~----~~p~i-~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iGPEGG~s~~E~~ 1538 (2492)
.+..|.+..-.. .-|-| ..-.+|++.+..+.. ...++++++|+..... ..+++.+++.|=-=||+++|.+
T Consensus 84 ~I~kaL~~~~~~~~~e~~pGI~vs~~~~e~~l~e~~~~~~~~~Ld~~G~~i~~~----~~~~~~~FILsDh~~l~~~e~~ 159 (194)
T d2qmma1 84 HIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA----QLPPNPLFVIGDHEGLTEEQEK 159 (194)
T ss_dssp HHHHHHHSCCCSSCEEEETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS----CCCSSEEEEEECTTCCCHHHHH
T ss_pred HHHHHhcCCCCCCceeecCCEEEeCCCHHHHHHHHhccCcEEEECCCCCccccc----ccCCCCeEEEeCCCCCChHHHH
Confidence 333444322111 12212 223477777765432 3456788887765432 2345667999999999999999
Q ss_pred HHHHcCCeEeecCCccceeeccchh
Q psy15223 1539 LAYECGVIILSLGKRILRTETASLV 1563 (2492)
Q Consensus 1539 ~~~~~gf~~vsLG~rILR~ETA~~~ 1563 (2492)
.|...|...+||||+.|=+..+...
T Consensus 160 ~L~~~~~~~iSLGp~~L~a~hcI~i 184 (194)
T d2qmma1 160 VVERYAALKLSLSPLSLLAEQCVVI 184 (194)
T ss_dssp HHHTTCSEEEECCSSCCCHHHHHHH
T ss_pred HHhhcCCeeEeccccccchhhhHhH
Confidence 9999999999999999987765543
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=84.04 E-value=0.29 Score=56.67 Aligned_cols=60 Identities=25% Similarity=0.159 Sum_probs=39.4
Q ss_pred cCceeeecccchhhhhHHHHHHHHHHhcCCccccEEEEeeeEEcCCCceeeeccCCccCcch
Q psy15223 2120 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 2181 (2492)
Q Consensus 2120 ~P~Dl~~~G~D~~r~wf~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ 2181 (2492)
|-+|+.++|.||.++-..-.=+... ..+.. -...++...+.+.+|+|||||.||.|+.++
T Consensus 184 ~~~~~qiGGsDQ~gNi~~G~dli~~-~~~~~-~~~~lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 184 EGCRLQIGGSDQWGNITAGLELIRK-TKGEA-RAFGLTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHH-HHC---CCEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred cCCchhhccchhhhHHHHHHHHHHH-hcccc-cceEeecccccccccceeeecCCCCccccc
Confidence 4589999999998543222111111 12322 234577777788999999999999998764
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=83.13 E-value=0.36 Score=55.89 Aligned_cols=60 Identities=25% Similarity=0.159 Sum_probs=38.7
Q ss_pred cCeeeeecccccchhhHHHHHHHHHHhcCCCCceEEEEeeEEEcCCCccccccCCCccCcch
Q psy15223 970 FPADLYLEGSDQHRGWFHSSLLTSIILNKSAPYKALLTHGFVVDSKGKKMSKSKGNIIKPQK 1031 (2492)
Q Consensus 970 ~p~Dl~~~G~D~~rgwf~s~l~~~~~~~~~~p~k~v~~hG~vld~~G~KMSKS~GN~i~p~~ 1031 (2492)
+-+|+.++|+||..+-..-.=+.- -..+.. -.-.++.-.+.+.+|+|||||.||.|+.++
T Consensus 184 ~~~~~qiGGsDQ~gNi~~G~dli~-~~~~~~-~~~~lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 184 EGCRLQIGGSDQWGNITAGLELIR-KTKGEA-RAFGLTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHH-HHHC---CCEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred cCCchhhccchhhhHHHHHHHHHH-Hhcccc-cceEeecccccccccceeeecCCCCccccc
Confidence 468999999999852211111111 112322 234567777779999999999999998754
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=82.78 E-value=2.6 Score=41.59 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHH
Q psy15223 2215 VETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYL 2294 (2492)
Q Consensus 2215 ~~~~~kl~n~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~ls~~Yl 2294 (2492)
+..+-|+.+.++.... .... .....++.++.++..+..+.+.+..+.++++.|..+..++++. ..|++||=
T Consensus 8 qYa~AR~~SIl~k~~~-~~~~-------~~~~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La-~~F~~fY~ 78 (126)
T d1iq0a1 8 QYAHARAHSILRKAGE-WGAP-------DLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLA-ASWNAYYN 78 (126)
T ss_dssp HHHHHHHHHHHHHHCC-CCCC-------CGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-cCCc-------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHH
Confidence 4566678887776521 1111 1123456678889999999999999999999999999999999 68999993
Q ss_pred Hhhh----h-hhcccc-CChHHHHHHHHHHHHHHHHHHHHHh
Q psy15223 2295 DILK----D-RLYTTK-KNSHARRSAQTSIWHINQSLLRLIS 2330 (2492)
Q Consensus 2295 e~~K----~-~l~~~~-~~~~~r~~~~~~l~~il~~l~~lLa 2330 (2492)
. .| . +...+. .....|.........++...+.+|.
T Consensus 79 ~-~~~~~~~~~i~~~~~~~~~~RL~L~~a~~~vL~~gL~lLG 119 (126)
T d1iq0a1 79 A-RENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG 119 (126)
T ss_dssp C-EETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred h-cccccccccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 2 11 0 011111 1123445555666677777777764
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=81.61 E-value=2.8 Score=41.45 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHH
Q psy15223 1066 ETYRRIRNTLRFLLANTSDFNPNINIIKISDMVEIDKYAIINITNLQKEILSHYRMYEFHMIVSKLQIYCSEDLGSFYLD 1145 (2492)
Q Consensus 1066 ~~~~kl~n~~rf~l~~l~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~~~~~f~~a~~~l~~f~~~~ls~~Yl~ 1145 (2492)
-++.|+.+.++.... .... ......+.++.++..+..+.+-+.++.++++.|..+..+.+++ ..|++||=.
T Consensus 9 Ya~AR~~SIl~k~~~-~~~~-------~~~~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La-~~F~~fY~~ 79 (126)
T d1iq0a1 9 YAHARAHSILRKAGE-WGAP-------DLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLA-ASWNAYYNA 79 (126)
T ss_dssp HHHHHHHHHHHHHCC-CCCC-------CGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHhccc-cCCc-------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHh
Confidence 356677777776521 1111 1123445677888899999999999999999999999999999 689999932
Q ss_pred hhh------hhhccccCChHHHHHHHHHHHHHHHHHHHHhcc
Q psy15223 1146 ILK------DRLYTTKKNSHARRSAQTSIWHINQSLLRLISP 1181 (2492)
Q Consensus 1146 ~~K------drl~~~~~~~~~r~sa~~~L~~il~~l~~lLaP 1181 (2492)
.| +.+-.+......|.........+|...+.+|.-
T Consensus 80 -~~~~~~~~~i~~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI 120 (126)
T d1iq0a1 80 -RENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 120 (126)
T ss_dssp -EETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -cccccccccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 11 111111122345666666777778877777753
|