Psyllid ID: psy15261

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLNPMPSSTE
cHHHHHHHcccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEccccccccccHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccHHHHccccccccHHHHHHHHcHHHHHHHccccccccc
cHHHHHHHccccccccccccccHHHHHHHccccHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEccccccEEcccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccHHHcHHHccHHHHHHHHHHcccccc
slrylqsvcnhpklvlgpshAQYEALvsrpglnlsdirHAAKLPALKQLLMdcgigaspgmsgsgphydpgapppsilTQHRALIFCQLRAMLDIVEndlfkcempgvtylrldgsvvSTARHAIVtkfnsdptIDVLLLTTQvgglglnltgadtvifvdhdwspmkdlQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTvinsenrnldtmatGKILDLFcldgqdsrqeagssgtnpgglkglldtlpelwdereyeeeydlsnfvqslnpmpsste
SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVtkfnsdptiDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRahrigqkkvvnvYRLITKNTLEEKIMNLQKFKLLTantvinsenrnlDTMATGKILDLFCLDGQDSRQEagssgtnpgglkgLLDTLPELWDEREYEEEYDlsnfvqslnpmpsste
SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVlllttqvgglglnltgADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKGLLDTLPelwdereyeeeydlSNFVQSLNPMPSSTE
****LQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIG********************ILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD********************LLDTLPELWDE************************
SLRYLQSVCNHPKLVLGPSHA*************SDIRHAAKLPALKQLLMDCGIGASPGM***************ILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTV********************************************************YEEEYDLSNF************
SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQD**********NPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLNPMPSSTE
SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGA*************GAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDG************NPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLNPM*****
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SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLNPMPSSTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
O149811849 TATA-binding protein-asso yes N/A 0.941 0.148 0.570 1e-92
P323331867 TATA-binding protein-asso yes N/A 0.965 0.151 0.537 2e-86
O430651953 Probable helicase mot1 OS yes N/A 0.938 0.140 0.533 4e-82
Q9UR24 973 DNA repair protein rhp26 no N/A 0.722 0.216 0.388 7e-35
Q9VDY1 1638 Putative DNA helicase Ino no N/A 0.578 0.103 0.434 8e-33
P0CO161765 Putative DNA helicase INO no N/A 0.523 0.086 0.439 9e-33
P0CO171765 Putative DNA helicase INO N/A N/A 0.523 0.086 0.439 9e-33
Q03468 1493 DNA excision repair prote no N/A 0.578 0.113 0.433 1e-32
Q4PGL2 1910 Putative DNA helicase INO N/A N/A 0.527 0.080 0.445 2e-32
Q6ZPV2 1559 DNA helicase INO80 OS=Mus no N/A 0.527 0.098 0.458 2e-31
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  339 bits (870), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/289 (57%), Positives = 215/289 (74%), Gaps = 14/289 (4%)

Query: 1    SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIG- 56
            +L+YL+ +CNHP LVL P H +++    +  +   +L DI+HA KL ALKQLL+DCG+G 
Sbjct: 1571 ALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGN 1630

Query: 57   ASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGS 116
             S   SG+           S++ QHR LIFCQL++MLDIVE+DL K  +P VTYLRLDGS
Sbjct: 1631 GSTSESGT----------ESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS 1680

Query: 117  VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRA 176
            +    RH+IV++FN+DP+IDVLLLTT VGGLGLNLTGADTV+FV+HDW+PM+DLQAMDRA
Sbjct: 1681 IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1740

Query: 177  HRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCL 236
            HRIGQK+VVNVYRLIT+ TLEEKIM LQKFK+  ANTVI+ EN +L +M T ++LDLF L
Sbjct: 1741 HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL 1800

Query: 237  DGQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLN 285
            D     ++A +S +    +K +L+ L +LWD+ +Y+ EY L NF+ SL 
Sbjct: 1801 DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK 1849
Regulates transcription in association with TATA binding protein (TBP). Removes TBP from the TATA box in an ATP-dependent manner.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1 Back     alignment and function description
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mot1 PE=1 SV=4 Back     alignment and function description
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp26 PE=4 SV=1 Back     alignment and function description
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2 Back     alignment and function description
>sp|P0CO16|INO80_CRYNJ Putative DNA helicase INO80 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=INO80 PE=3 SV=1 Back     alignment and function description
>sp|P0CO17|INO80_CRYNB Putative DNA helicase INO80 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=INO80 PE=3 SV=1 Back     alignment and function description
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1 Back     alignment and function description
>sp|Q4PGL2|INO80_USTMA Putative DNA helicase INO80 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=INO80 PE=3 SV=1 Back     alignment and function description
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
328702354 1782 PREDICTED: TATA-binding protein-associat 0.924 0.151 0.638 1e-103
157134957 1904 hypothetical protein AaeL_AAEL013189 [Ae 0.921 0.141 0.609 1e-100
170034779 1899 TATA-binding protein-associated factor 1 0.921 0.141 0.605 1e-99
91088413 1810 PREDICTED: similar to TATA-binding prote 0.934 0.150 0.621 8e-99
347966667 2067 AGAP001820-PA [Anopheles gambiae str. PE 0.924 0.130 0.592 3e-98
242017388 1746 TATA-binding protein-associated factor, 0.938 0.156 0.617 3e-98
340716725 1873 PREDICTED: TATA-binding protein-associat 0.976 0.152 0.613 1e-97
312371646 2134 hypothetical protein AND_21824 [Anophele 0.924 0.126 0.550 2e-97
383858634 1875 PREDICTED: TATA-binding protein-associat 0.972 0.151 0.604 2e-97
350421782 1872 PREDICTED: TATA-binding protein-associat 0.972 0.151 0.610 7e-97
>gi|328702354|ref|XP_003241882.1| PREDICTED: TATA-binding protein-associated factor 172-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/288 (63%), Positives = 228/288 (79%), Gaps = 18/288 (6%)

Query: 1    SLRYLQSVCNHPKLVLGPSHAQYEALV---SRPGLNLSDIRHAAKLPALKQLLMDCGIGA 57
            +LRYLQ+VCNHPKLVL P H QY  ++   S    +L+DI+HAAKLPALKQLLMDCGIG 
Sbjct: 1508 ALRYLQNVCNHPKLVLTPQHPQYSNIIKQISESNSSLTDIQHAAKLPALKQLLMDCGIGL 1567

Query: 58   SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
                              ++++QHRALIFCQL++ML+I+ENDLFK  MP V+YLRLDGSV
Sbjct: 1568 VSNND-------------TVISQHRALIFCQLKSMLNIIENDLFKAHMPNVSYLRLDGSV 1614

Query: 118  VSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMDRAH 177
              + R+A+V +FN DP+ID L++TTQVGGLGLNLTGADTVIFV+HDWSPMKDLQAMDRAH
Sbjct: 1615 PVSQRYALVNRFNVDPSIDTLIMTTQVGGLGLNLTGADTVIFVEHDWSPMKDLQAMDRAH 1674

Query: 178  RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
            RIGQKKVVNVYRLIT++TLEEKIMN QKFKL TANTVI+SEN +L TM T K+LDLF LD
Sbjct: 1675 RIGQKKVVNVYRLITRSTLEEKIMNFQKFKLKTANTVISSENSSLQTMGTDKLLDLFSLD 1734

Query: 238  GQDSRQEAGSSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLN 285
              D  +E   + ++ G +K +L+TLPELWD + Y++EYDL++F+Q+L+
Sbjct: 1735 --DPSKEKNKTNSSGGSMKSVLETLPELWDAKIYDDEYDLNSFIQTLS 1780

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157134957|ref|XP_001663375.1| hypothetical protein AaeL_AAEL013189 [Aedes aegypti] gi|108870352|gb|EAT34577.1| AAEL013189-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170034779|ref|XP_001845250.1| TATA-binding protein-associated factor 172 [Culex quinquefasciatus] gi|167876380|gb|EDS39763.1| TATA-binding protein-associated factor 172 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|91088413|ref|XP_966659.1| PREDICTED: similar to TATA-binding protein-associated factor 172 [Tribolium castaneum] gi|270011757|gb|EFA08205.1| hypothetical protein TcasGA2_TC005832 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|347966667|ref|XP_321235.5| AGAP001820-PA [Anopheles gambiae str. PEST] gi|333469954|gb|EAA01172.6| AGAP001820-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|242017388|ref|XP_002429171.1| TATA-binding protein-associated factor, putative [Pediculus humanus corporis] gi|212514049|gb|EEB16433.1| TATA-binding protein-associated factor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340716725|ref|XP_003396845.1| PREDICTED: TATA-binding protein-associated factor 172-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|312371646|gb|EFR19778.1| hypothetical protein AND_21824 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|383858634|ref|XP_003704804.1| PREDICTED: TATA-binding protein-associated factor 172 [Megachile rotundata] Back     alignment and taxonomy information
>gi|350421782|ref|XP_003492955.1| PREDICTED: TATA-binding protein-associated factor 172-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
UNIPROTKB|B4E0W6677 BTAF1 "TATA-binding protein-as 0.941 0.406 0.498 8e-69
ZFIN|ZDB-GENE-021025-11861 btaf1 "BTAF1 RNA polymerase II 0.866 0.135 0.543 9e-69
FB|FBgn00227871924 Hel89B "Helicase 89B" [Drosoph 0.910 0.138 0.544 1.2e-68
UNIPROTKB|I3LD211845 I3LD21 "Uncharacterized protei 0.941 0.149 0.501 1.3e-67
UNIPROTKB|F1SCA01850 BTAF1 "Uncharacterized protein 0.941 0.148 0.501 1.3e-67
UNIPROTKB|I3LTQ11850 I3LTQ1 "Uncharacterized protei 0.941 0.148 0.501 1.3e-67
UNIPROTKB|E2QWL41879 BTAF1 "Uncharacterized protein 0.941 0.146 0.498 1.7e-67
UNIPROTKB|F1NHJ51845 BTAF1 "Uncharacterized protein 0.941 0.149 0.498 2.2e-67
UNIPROTKB|O149811849 BTAF1 "TATA-binding protein-as 0.941 0.148 0.498 2.2e-67
RGD|15641301848 Btaf1 "BTAF1 RNA polymerase II 0.941 0.148 0.494 7.4e-67
UNIPROTKB|B4E0W6 BTAF1 "TATA-binding protein-associated factor 172" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 143/287 (49%), Positives = 189/287 (65%)

Query:     1 SLRYLQSVCNHPKLVLGPSHAQYEALVSRPGL---NLSDIRHAAKLPALKQLLMDCGIGA 57
             +L+YL+ +CNHP LVL P H +++    +  +   +L DI+HA KL ALKQLL+DCG+G 
Sbjct:   399 ALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG- 457

Query:    58 SPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSV 117
             +   S SG          S++ QHR LIFCQL++MLDIVE+DL K  +P VTYLRLDGS+
Sbjct:   458 NGSTSESGTE--------SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSI 509

Query:   118 VSTARHAIVTKFNSDPTIDVXXXXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAH 177
                 RH+IV++FN+DP+IDV                ADTV+FV+HDW+PM+DLQAMDRAH
Sbjct:   510 PPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAH 569

Query:   178 RIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLD 237
             RIGQK+VVNVYRLIT+ TLEEKIM LQKFK+  ANTVI+ EN +L +M T ++LDLF LD
Sbjct:   570 RIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 629

Query:   238 GQDSRQEAGSSGTNPGGLKGLLDTLPXXXXXXXXXXXXXXSNFVQSL 284
                  ++A +S +    +K +L+ L                NF+ SL
Sbjct:   630 KDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 676
GO:0003677 "DNA binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
ZFIN|ZDB-GENE-021025-1 btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription factor-associated" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0022787 Hel89B "Helicase 89B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|I3LD21 I3LD21 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCA0 BTAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTQ1 I3LTQ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWL4 BTAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHJ5 BTAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O14981 BTAF1 "TATA-binding protein-associated factor 172" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1564130 Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P32333MOT1_YEAST3, ., 6, ., 4, ., -0.53790.96570.1510yesN/A
O43065MOT1_SCHPO3, ., 6, ., 4, ., -0.53330.93830.1402yesN/A
O14981BTAF1_HUMAN3, ., 6, ., 4, ., -0.57090.94170.1487yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 7e-41
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 4e-34
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 9e-26
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 2e-19
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-18
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 8e-04
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  150 bits (380), Expect = 7e-41
 Identities = 88/243 (36%), Positives = 129/243 (53%), Gaps = 38/243 (15%)

Query: 4   YLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDI--------RHAAKLPALKQLLMDCGI 55
            L+ +CNHP LV     A ++ +V     +                KL AL +LL+    
Sbjct: 647 RLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLL---- 702

Query: 56  GASPGMSGSGPHYDPGAPPPSILTQ---HRALIFCQLRAMLDIVENDLFKCEMPGVTYLR 112
                                +L +   H+ LIF Q   +LD++E      +  G+ Y+R
Sbjct: 703 -------------------DKLLEEGHYHKVLIFSQFTPVLDLLE---DYLKALGIKYVR 740

Query: 113 LDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQA 172
           LDGS  +  R  ++ +FN+D    V LL+ + GGLGLNLTGADTVI  D  W+P  +LQA
Sbjct: 741 LDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQA 800

Query: 173 MDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGK-IL 231
           +DRAHRIGQK+ V VYRLIT+ T+EEKI+ LQ+ K    +++I++E     +  + + +L
Sbjct: 801 IDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLL 860

Query: 232 DLF 234
           DLF
Sbjct: 861 DLF 863

Length = 866
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
KOG0392|consensus1549 100.0
KOG0385|consensus 971 100.0
KOG0384|consensus 1373 100.0
KOG0387|consensus 923 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0389|consensus941 100.0
KOG0390|consensus776 100.0
KOG0391|consensus 1958 100.0
KOG1002|consensus791 100.0
KOG0386|consensus 1157 100.0
KOG0388|consensus1185 99.98
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 99.98
KOG1015|consensus 1567 99.97
KOG4439|consensus901 99.97
PRK04914 956 ATP-dependent helicase HepA; Validated 99.94
KOG1000|consensus689 99.93
KOG1016|consensus 1387 99.92
KOG1001|consensus674 99.87
PRK13766 773 Hef nuclease; Provisional 99.78
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.77
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.7
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.69
KOG0331|consensus519 99.69
PTZ00110545 helicase; Provisional 99.65
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.63
KOG0298|consensus1394 99.62
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.62
KOG0328|consensus400 99.62
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.59
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.58
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.58
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.57
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.57
KOG0330|consensus476 99.57
KOG0333|consensus673 99.56
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.56
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.55
smart0049082 HELICc helicase superfamily c-terminal domain. 99.54
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.53
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.48
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.48
PTZ00424401 helicase 45; Provisional 99.46
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.45
PHA02558501 uvsW UvsW helicase; Provisional 99.45
KOG0332|consensus477 99.45
KOG0383|consensus696 99.44
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.41
KOG0341|consensus610 99.4
KOG0336|consensus629 99.4
KOG0335|consensus482 99.39
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.35
KOG0345|consensus 567 99.33
KOG0326|consensus459 99.33
KOG0342|consensus543 99.32
KOG0344|consensus593 99.31
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.31
KOG0354|consensus 746 99.29
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.28
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.27
KOG0343|consensus 758 99.26
KOG0348|consensus708 99.25
PRK13767 876 ATP-dependent helicase; Provisional 99.22
KOG0340|consensus442 99.21
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.21
KOG0327|consensus397 99.21
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.19
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.18
KOG4284|consensus 980 99.18
PRK05298652 excinuclease ABC subunit B; Provisional 99.16
KOG0338|consensus691 99.16
KOG0350|consensus620 99.15
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.15
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.15
PRK10689 1147 transcription-repair coupling factor; Provisional 99.13
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.12
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.1
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.09
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.09
KOG0339|consensus731 99.08
KOG0347|consensus731 99.07
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.06
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.04
KOG0334|consensus 997 99.01
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 98.99
KOG0349|consensus725 98.95
PHA02653675 RNA helicase NPH-II; Provisional 98.95
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 98.94
PRK02362 737 ski2-like helicase; Provisional 98.94
KOG1123|consensus776 98.91
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.91
KOG0346|consensus569 98.88
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 98.87
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 98.86
PRK01172 674 ski2-like helicase; Provisional 98.81
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.81
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 98.79
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.78
PRK00254 720 ski2-like helicase; Provisional 98.7
KOG0953|consensus 700 98.66
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 98.62
KOG0337|consensus529 98.62
COG1202 830 Superfamily II helicase, archaea-specific [General 98.61
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.59
PRK09694 878 helicase Cas3; Provisional 98.59
KOG0351|consensus 941 98.54
PF13871278 Helicase_C_4: Helicase_C-like 98.54
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 98.45
PRK09401 1176 reverse gyrase; Reviewed 98.42
COG1201 814 Lhr Lhr-like helicases [General function predictio 98.31
KOG0352|consensus 641 98.26
TIGR00595505 priA primosomal protein N'. All proteins in this f 98.24
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 98.23
PRK14701 1638 reverse gyrase; Provisional 98.09
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.09
COG1200677 RecG RecG-like helicase [DNA replication, recombin 98.02
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 98.01
COG4098441 comFA Superfamily II DNA/RNA helicase required for 97.98
COG0556663 UvrB Helicase subunit of the DNA excision repair c 97.97
PRK12326 764 preprotein translocase subunit SecA; Reviewed 97.93
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.86
PRK05580679 primosome assembly protein PriA; Validated 97.79
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 97.76
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 97.67
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.59
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 97.46
COG1205 851 Distinct helicase family with a unique C-terminal 97.32
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 97.32
KOG0353|consensus 695 97.3
COG1204 766 Superfamily II helicase [General function predicti 97.1
COG4096 875 HsdR Type I site-specific restriction-modification 97.09
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.79
KOG0329|consensus387 96.64
CHL00122 870 secA preprotein translocase subunit SecA; Validate 96.61
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 96.55
KOG0922|consensus 674 96.52
KOG4150|consensus 1034 96.26
COG4889 1518 Predicted helicase [General function prediction on 96.12
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 96.0
KOG0950|consensus 1008 95.86
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 95.86
KOG0952|consensus 1230 95.68
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 95.68
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 95.66
KOG0951|consensus 1674 95.47
KOG1513|consensus 1300 95.44
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 94.96
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 94.85
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 94.75
KOG0949|consensus 1330 94.72
KOG0924|consensus 1042 94.4
KOG0923|consensus 902 94.35
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 94.22
smart00492141 HELICc3 helicase superfamily c-terminal domain. 94.18
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 93.3
KOG0926|consensus 1172 93.01
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 93.01
KOG0947|consensus 1248 92.76
COG1198730 PriA Primosomal protein N' (replication factor Y) 92.66
KOG0920|consensus 924 92.5
smart00491142 HELICc2 helicase superfamily c-terminal domain. 92.27
KOG0391|consensus 1958 90.92
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 89.96
TIGR00595 505 priA primosomal protein N'. All proteins in this f 89.01
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 88.6
PRK05580 679 primosome assembly protein PriA; Validated 87.61
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 87.26
TIGR00643 630 recG ATP-dependent DNA helicase RecG. 87.19
KOG0388|consensus1185 85.66
COG1198 730 PriA Primosomal protein N' (replication factor Y) 85.01
PRK14873 665 primosome assembly protein PriA; Provisional 84.72
TIGR02562 1110 cas3_yersinia CRISPR-associated helicase Cas3. The 83.69
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 81.22
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 80.84
PRK13766 773 Hef nuclease; Provisional 80.75
>KOG0392|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.7e-68  Score=532.20  Aligned_cols=275  Identities=61%  Similarity=1.002  Sum_probs=248.3

Q ss_pred             CHHHHHhhcCCCcCcCCCChhhHHHhhc---CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261          1 SLRYLQSVCNHPKLVLGPSHAQYEALVS---RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSI   77 (292)
Q Consensus         1 al~~Lrk~c~hP~lv~~~~~~~~~~~~~---~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (292)
                      |||||||+||||+||.++.||....+..   ..+.++|++++||||.||++||.+||||..+..+.         ...+.
T Consensus      1267 aLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~---------g~~s~ 1337 (1549)
T KOG0392|consen 1267 ALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEV---------GTPSD 1337 (1549)
T ss_pred             HHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccc---------cCcch
Confidence            6999999999999999999998887766   56678999999999999999999999997765321         12233


Q ss_pred             CCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEE
Q psy15261         78 LTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV  157 (292)
Q Consensus        78 ~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~v  157 (292)
                      ..+||+|||||+++++|++++.|.+..++.+.|+++||++++.+|++++++||++++++|||++|.+||.||||++|++|
T Consensus      1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred             hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhc-c
Q psy15261        158 IFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFC-L  236 (292)
Q Consensus       158 I~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~-~  236 (292)
                      ||+|++|||+++.|||+|+||+||+|.|+|||||++||+||+||.+|++|.+++++|++.+|..+..|++++++|||+ .
T Consensus      1418 VFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~~ 1497 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTVL 1497 (1549)
T ss_pred             EEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CCCCcccccC----CCCCCCCCccccccCCCCCcchhhhhhhcchhHHHHhcC
Q psy15261        237 DGQDSRQEAG----SSGTNPGGLKGLLDTLPELWDEREYEEEYDLSNFVQSLN  285 (292)
Q Consensus       237 ~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~  285 (292)
                      +++.++...+    +-.+-.+..+.++.+|+++|||+||+ |||+++|+.+|+
T Consensus      1498 ~gd~~~~kg~ed~a~~~g~~~t~k~~l~~L~elWDesQYd-eynld~Fl~tl~ 1549 (1549)
T KOG0392|consen 1498 DGDGAAKKGGEDPAGKAGLKGTMKPILGNLAELWDESQYD-EYNLDSFLRTLN 1549 (1549)
T ss_pred             CCchhhhcCCCCchhhccccccchHhhccHHhhcChhhhh-hhhHHHHHhcCC
Confidence            5554332111    11123455788999999999999998 899999999885

>KOG0385|consensus Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>KOG1016|consensus Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>KOG1513|consensus Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-21
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 3e-14
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 3e-11
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 4e-11
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 8e-11
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 81  HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VXX 139
           HR LIF Q+  MLDI+ + L    + G+ + RLDG+V S  R   +  FNS  + D V  
Sbjct: 573 HRVLIFSQMVRMLDILGDYL---SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629
Query: 140 XXXXXXXXXXXXXXADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEK 199
                         ADTV+  D DW+P  DLQAM RAHRIGQK  V VYRL++K+T+EE+
Sbjct: 630 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 689
Query: 200 IMNLQKFKLLTANTVIN 216
           ++   + K++    +I+
Sbjct: 690 VLERARKKMILEYAIIS 706
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-62
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 3e-54
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 6e-52
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 3e-50
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 1e-32
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 2e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 6e-11
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 3e-07
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 6e-05
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 9e-05
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 1e-04
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  207 bits (529), Expect = 1e-62
 Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 37/243 (15%)

Query: 5   LQSVCNHPKLVLGPSHAQ---YEALVSRPGLNLSD----IRHAAKLPALKQLLMDCGIGA 57
           L+ +CNHP L+          ++  +     N S      + + K+  L  +L       
Sbjct: 356 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYIL------- 408

Query: 58  SPGMSGSGPHYDPGAPPPSILTQ--HRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDG 115
                                T    + ++       LD+ E  L  C      Y+RLDG
Sbjct: 409 -----------------AMTRTTTSDKVVLVSNYTQTLDLFE-KL--CRNRRYLYVRLDG 448

Query: 116 SVVSTARHAIVTKFNSDPTID-VLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMD 174
           ++    R  IV +FN+  + + + +L+++ GG GLNL GA+ ++  D DW+P  D QAM 
Sbjct: 449 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 508

Query: 175 RAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
           R  R GQKK   +YRL++  T+EEKI+  Q  K   ++ V++ E       + G++ +LF
Sbjct: 509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELF 568

Query: 235 CLD 237
            L+
Sbjct: 569 SLN 571
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.97
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.89
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.86
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.84
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.84
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.83
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.82
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.81
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.81
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.81
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.78
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.78
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.78
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.78
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.64
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 99.77
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.72
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.68
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.66
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.66
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.66
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.66
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.66
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.65
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.65
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.62
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.62
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.6
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.6
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.6
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.56
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.55
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.54
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.54
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.52
3h1t_A590 Type I site-specific restriction-modification syst 99.49
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.48
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.4
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.38
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.35
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.32
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.32
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.29
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 99.29
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.26
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.24
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.23
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.2
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.19
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.18
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.17
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.14
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.13
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.11
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.11
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.11
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.11
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.08
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.07
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.07
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.04
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 98.99
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 98.96
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 98.89
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 98.27
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 98.23
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 98.22
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 97.09
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 96.35
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 94.39
1gm5_A 780 RECG; helicase, replication restart; HET: DNA ADP; 85.14
3oiy_A 414 Reverse gyrase helicase domain; topoisomerase, DNA 80.72
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=3e-43  Score=317.94  Aligned_cols=198  Identities=30%  Similarity=0.451  Sum_probs=167.1

Q ss_pred             HHHHHhhcCCCcCcCCCChhhHHHhhcCCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15261          2 LRYLQSVCNHPKLVLGPSHAQYEALVSRPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPPPSILTQH   81 (292)
Q Consensus         2 l~~Lrk~c~hP~lv~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (292)
                      |+.||++||||+|+.+..               ..+..|+|+.+|.++|.++.                       ..++
T Consensus        72 l~~Lrq~~~hP~l~~~~~---------------~~~~~s~K~~~L~~ll~~~~-----------------------~~~~  113 (271)
T 1z5z_A           72 LLKLKQIVDHPALLKGGE---------------QSVRRSGKMIRTMEIIEEAL-----------------------DEGD  113 (271)
T ss_dssp             HHHHHHHTTCTHHHHCSC---------------CCSTTCHHHHHHHHHHHHHH-----------------------HTTC
T ss_pred             HHHHHHHcCCHHHhcCCc---------------cccccCHHHHHHHHHHHHHH-----------------------hCCC
Confidence            689999999999986321               23567899999999999872                       4689


Q ss_pred             eEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCCeeEEEecccccccccCCCCCCEEEEeC
Q psy15261         82 RALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD  161 (292)
Q Consensus        82 KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~~~vlLlst~~~~~GlnL~~a~~vI~~d  161 (292)
                      |+||||++..+++.|...|...  .|+.+..++|+++..+|++++++|+.++.++|+|++|+++|+|+||+.|++||+||
T Consensus       114 kvlIFs~~~~~~~~l~~~L~~~--~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d  191 (271)
T 1z5z_A          114 KIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD  191 (271)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHH--HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECS
T ss_pred             eEEEEeccHHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEEC
Confidence            9999999999999999999431  27889999999999999999999998778889999999999999999999999999


Q ss_pred             CCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHhhccCCC
Q psy15261        162 HDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLFCLDGQ  239 (292)
Q Consensus       162 ~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dlf~~~~~  239 (292)
                      +||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..+++.++++++.....++.+++.+||.++.+
T Consensus       192 ~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  269 (271)
T 1z5z_A          192 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG  269 (271)
T ss_dssp             CCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHSCCCT
T ss_pred             CCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHccCchhhhcCCHHHHHHHhccCCC
Confidence            999999999999999999999999999999999999999999999999999999988888889999999999998754
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 5e-29
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 2e-27
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 3e-15
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 2e-10
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 9e-06
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 0.001
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  111 bits (277), Expect = 5e-29
 Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 31/270 (11%)

Query: 2   LRYLQSVCNHPKLVLGPSHAQYEA-------LVSRPGLNLSDIRHAAKLPALKQLLMDCG 54
           +  L+ +CNHP L+        E                  + + + K+  L  +L    
Sbjct: 55  ITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR 114

Query: 55  IGASPGMSGSGPHYDPGAPPPSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLD 114
              S                       + ++       LD+ E          V      
Sbjct: 115 TTTS----------------------DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM 152

Query: 115 GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKDLQAMD 174
              +      +    N      + +L+++ GG GLNL GA+ ++  D DW+P  D QAM 
Sbjct: 153 --SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 210

Query: 175 RAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDLF 234
           R  R GQKK   +YRL++  T+EEKI+  Q  K   ++ V++ E       + G++ +LF
Sbjct: 211 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELF 270

Query: 235 CLDGQDSRQEAGSSGTNPGGLKGLLDTLPE 264
            L+ +                   +   P+
Sbjct: 271 SLNEKTLSDTHDRFRCRRCVNGRQVRPPPD 300
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.89
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.87
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.87
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.87
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.85
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.85
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.83
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.82
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.78
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.68
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.66
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.42
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.39
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.27
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.19
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.17
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.97
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.7
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 98.53
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.38
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.88
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 91.8
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 89.72
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.1e-45  Score=342.15  Aligned_cols=214  Identities=29%  Similarity=0.508  Sum_probs=183.9

Q ss_pred             HHHHHhhcCCCcCcCCCChhh---HHHhhc----CCCCCcccccccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q psy15261          2 LRYLQSVCNHPKLVLGPSHAQ---YEALVS----RPGLNLSDIRHAAKLPALKQLLMDCGIGASPGMSGSGPHYDPGAPP   74 (292)
Q Consensus         2 l~~Lrk~c~hP~lv~~~~~~~---~~~~~~----~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~   74 (292)
                      |++|||+||||+|+.......   +.....    ........++.|+|+..|.++|..+.                    
T Consensus        55 l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~--------------------  114 (346)
T d1z3ix1          55 ITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR--------------------  114 (346)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHhCCHHHhhhhhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHH--------------------
Confidence            789999999999975321110   000001    11222345678999999999998763                    


Q ss_pred             CCCCCCCeEEEEeccHHHHHHHHHHHhccCCCCceEEEEECCCCHHHHHHHHHHhcCCCC-eeEEEecccccccccCCCC
Q psy15261         75 PSILTQHRALIFCQLRAMLDIVENDLFKCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTG  153 (292)
Q Consensus        75 ~~~~~~~KvlIFsq~~~~l~~l~~~L~~~~~~~~~~~~i~G~~~~~~R~~~v~~F~~~~~-~~vlLlst~~~~~GlnL~~  153 (292)
                        ..+++|+||||+|+.++++|+.+|..   .|+.+++++|+++..+|..++++|+.+.. ..|||+++.+||.||||++
T Consensus       115 --~~~g~KvlIFs~~~~~ld~l~~~l~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~  189 (346)
T d1z3ix1         115 --TTTSDKVVLVSNYTQTLDLFEKLCRN---RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG  189 (346)
T ss_dssp             --HHCCCEEEEEESCHHHHHHHHHHHHH---HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred             --HhcCCceeEEeehhhhhHHHHHHHhh---hhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhcccccc
Confidence              24689999999999999999999944   48999999999999999999999997544 4699999999999999999


Q ss_pred             CCEEEEeCCCCChhhHHHHhHhhhhcCCcceEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCChHHHHHh
Q psy15261        154 ADTVIFVDHDWSPMKDLQAMDRAHRIGQKKVVNVYRLITKNTLEEKIMNLQKFKLLTANTVINSENRNLDTMATGKILDL  233 (292)
Q Consensus       154 a~~vI~~d~~wnp~~~~Qa~gR~~RiGQ~~~V~Vy~lv~~~TvEe~i~~~~~~K~~~~~~vv~~~~~~~~~~~~~el~dl  233 (292)
                      |++||+||++|||..+.||+||+||+||+++|+||+|+++||+|++|++++..|..+++.+++..+.....++.+++.+|
T Consensus       190 a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~l  269 (346)
T d1z3ix1         190 ANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELREL  269 (346)
T ss_dssp             EEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHH
T ss_pred             ceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCchhhhhcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988877788999999999


Q ss_pred             hccCCCC
Q psy15261        234 FCLDGQD  240 (292)
Q Consensus       234 f~~~~~~  240 (292)
                      |.++...
T Consensus       270 f~~~~~~  276 (346)
T d1z3ix1         270 FSLNEKT  276 (346)
T ss_dssp             TCCCSSC
T ss_pred             hcCCCcc
Confidence            9997765
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure