Psyllid ID: psy15264

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MLAVMSSDQARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVKR
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccccccccHHHHcccHHHHHHHHHHHHHHHHccccccHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHccccccEEEcccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlavmssdqaRDISKDflttgrtgrrnalpdilgenartsvadlpdqlgalstsdGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVKR
Flexible Loop (DISEMBL)
mlavmssdqardiskdflttgrtgrrnalpdilgenaRTSVADLPDQLGALSTSDGNAAVLAVTlsrtseksvPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVKR
Low Complexity Region (SEG)
MLAVMSSDQARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVKR
Disordered region (IsUnstruct)
*********************************************************AAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ****
Disordered Region (DISOPRED)
***********DISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK***
Disordered Region (DISEMBL)
*********ARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVKR
Disordered Region (DISPRO)
*LAVMSSDQARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAVMSSDQARDISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q27987	763	Thyrotropin receptor OS=B	yes	N/A	0.822	0.127	0.386	4e-12
P79763	693	Follicle-stimulating horm	yes	N/A	0.805	0.137	0.373	5e-12
P14763	764	Thyrotropin receptor OS=C	yes	N/A	0.822	0.126	0.386	9e-12
P56495	764	Thyrotropin receptor OS=O	N/A	N/A	0.822	0.126	0.376	1e-11
Q8SPP9	764	Thyrotropin receptor OS=S	yes	N/A	0.822	0.126	0.386	1e-11
Q7ZTV5	693	Follicle-stimulating horm	N/A	N/A	0.5	0.085	0.491	2e-11
P16473	764	Thyrotropin receptor OS=H	yes	N/A	0.822	0.126	0.386	2e-11
Q9BGN4	763	Thyrotropin receptor OS=F	N/A	N/A	0.822	0.127	0.376	6e-11
Q8R428	695	Follicle-stimulating horm	no	N/A	0.5	0.084	0.508	1e-10
P21463	764	Thyrotropin receptor OS=R	yes	N/A	0.822	0.126	0.376	1e-10

>sp|Q27987|TSHR_BOVIN Thyrotropin receptor OS=Bos taurus GN=TSHR PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct: 392 SEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 447

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 448 PRFLMCNLAFADFCMGLYLLLIASVDLYTQSEYYNHAIDWQ 488

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).
Bos taurus (taxid: 9913)

>sp|P79763|FSHR_CHICK Follicle-stimulating hormone receptor OS=Gallus gallus GN=FSHR PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 16  DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPR 75
           DF+ + +    N   DI+G N    +    + L       GN  VL + +S   + +VPR
Sbjct: 343 DFVCSPKPDAFNPCEDIMGYNVLRVLIWFINILAI----TGNTTVLIILISSQYKLTVPR 398

Query: 76  FLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           FL+ +LA ADLC+  YLL +A  D+Q+   Y+NYA DWQ
Sbjct: 399 FLMCNLAFADLCIGIYLLFIASVDIQTKSRYYNYAIDWQ 437

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Gallus gallus (taxid: 9031)

>sp|P14763|TSHR_CANFA Thyrotropin receptor OS=Canis familiaris GN=TSHR PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           ++D + T ++   N   DI+G      V      L  L    GN  VL V L+   + +V
Sbjct: 393 NEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLIVLLTSHYKLTV 448

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 449 PRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQ 489

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).

Canis familiaris (taxid: 9615)

>sp|P56495|TSHR_SHEEP Thyrotropin receptor OS=Ovis aries GN=TSHR PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           S++ + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct: 393 SEEMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 448

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 449 PRFLMCNLAFADFCMGLYLLLIASVDLYTQSEYYNHAIDWQ 489

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).

Ovis aries (taxid: 9940)

>sp|Q8SPP9|TSHR_PIG Thyrotropin receptor OS=Sus scrofa GN=TSHR PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct: 393 SEDMVCTPKSDEFNPCEDIMGYRFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 448

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 449 PRFLMCNLAFADFCMGMYLLLIASVDLYTQSEYYNHAIDWQ 489

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).

Sus scrofa (taxid: 9823)

>sp|Q7ZTV5|FSHR_CAIMO Follicle-stimulating hormone receptor OS=Cairina moschata GN=FSHR PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           GN  VL + +S   + +VPRFL+ +LA ADLC+  YLL +A  D+Q+   Y+NYA DWQ
Sbjct: 379 GNIVVLIILISSQYKLTVPRFLMCNLAFADLCIGIYLLFIASVDIQTKSQYYNYAIDWQ 437

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Cairina moschata (taxid: 8855)

>sp|P16473|TSHR_HUMAN Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct: 393 SEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLLILLTSHYKLNV 448

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 449 PRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQ 489

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).

Homo sapiens (taxid: 9606)

>sp|Q9BGN4|TSHR_FELCA Thyrotropin receptor OS=Felis catus GN=TSHR PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           ++D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct: 392 NEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLIILLTSHYKLTV 447

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 448 PRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQ 488

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).

Felis catus (taxid: 9685)

>sp|Q8R428|FSHR_CAVPO Follicle-stimulating hormone receptor OS=Cavia porcellus GN=FSHR PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           GN AVL V  +   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +  +Y NYA DWQ
Sbjct: 379 GNVAVLVVLTTSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDVHTRTLYHNYAIDWQ 437

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Cavia porcellus (taxid: 10141)

>sp|P21463|TSHR_RAT Thyrotropin receptor OS=Rattus norvegicus GN=Tshr PE=1 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 14  SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
           ++D + T ++   N   DI+G      V      +  L    GN  VL V L+   + +V
Sbjct: 393 NEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSPMALL----GNVFVLFVLLTSHYKLTV 448

Query: 74  PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct: 449 PRFLMCNLAFADFCMGVYLLLIASVDLYTHTEYYNHAIDWQ 489

Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
210076546	749	Sl LGR1 [Spodoptera littoralis]	0.5	0.078	0.576	8e-13
170043092	841	leucine-rich transmembrane protein [Cule	0.5	0.070	0.593	9e-13
328720344	758	PREDICTED: follicle-stimulating hormone	0.508	0.079	0.566	2e-12
157105802	860	leucine-rich transmembrane protein [Aede	0.5	0.068	0.576	3e-12
403182641	774	AAEL004399-PA, partial [Aedes aegypti]	0.5	0.076	0.576	3e-12
392936141	248	follicle stimulating hormone receptor, p	0.677	0.322	0.440	4e-12
193610777	121	PREDICTED: hypothetical protein LOC10016	0.457	0.446	0.629	5e-12
170716328	251	follicle stimulating hormone receptor [V	0.677	0.318	0.440	8e-12
392936151	251	follicle stimulating hormone receptor, p	0.677	0.318	0.440	9e-12
341932029	248	follicle stimulating hormone receptor, p	0.677	0.322	0.440	9e-12

>gi|210076546|gb|ACJ06652.1| Sl LGR1 [Spodoptera littoralis]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           GN AVL V L+  +E +VPRFL+ HLA +DLC   YL +LA+ DL+S   +FNYAYDWQ
Sbjct: 425 GNVAVLLVLLTNHTEITVPRFLMCHLAFSDLCTGLYLFMLAVVDLRSYGEFFNYAYDWQ 483

Source: Spodoptera littoralis

Species: Spodoptera littoralis

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043092|ref|XP_001849235.1| leucine-rich transmembrane protein [Culex quinquefasciatus] gi|167866512|gb|EDS29895.1| leucine-rich transmembrane protein [Culex quinquefasciatus]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 41/59 (69%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           GN AVL V  S  ++ SVP+FLI HLA ADLCM  YLLL+A  D  S   YFN+A+DWQ
Sbjct: 480 GNVAVLVVLFSNRTDMSVPKFLICHLAFADLCMGLYLLLIASIDAHSMGEYFNFAFDWQ 538

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720344|ref|XP_001945379.2| PREDICTED: follicle-stimulating hormone receptor-like [Acyrthosiphon pisum]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 40/60 (66%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 115
            N  V+ V   +    SVPRFL+ +LA AD C A YLLLLA KDL+S+E YFNYAY WQ 
Sbjct: 455 ANLVVMTVVFRKNFNHSVPRFLMCNLAFADFCTAIYLLLLAYKDLESSEKYFNYAYSWQN 514

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105802|ref|XP_001649032.1| leucine-rich transmembrane protein [Aedes aegypti]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           GN AVL V  S  ++ +VP+FLI HLA ADLCM  YLLL+A  D  S   YFN+A+DWQ
Sbjct: 491 GNVAVLVVLFSNRTDLTVPKFLICHLAFADLCMGLYLLLIASIDAHSMGEYFNFAFDWQ 549

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182641|gb|EAT44221.2| AAEL004399-PA, partial [Aedes aegypti]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
           GN AVL V  S  ++ +VP+FLI HLA ADLCM  YLLL+A  D  S   YFN+A+DWQ
Sbjct: 494 GNVAVLVVLFSNRTDLTVPKFLICHLAFADLCMGLYLLLIASIDAHSMGEYFNFAFDWQ 552

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392936141|gb|AFM93135.1| follicle stimulating hormone receptor, partial [Brachymeles gracilis]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 31  DILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
           DI+G N    +    + L  +    GN  VL + +S   + +VPRFL+ +LA ADLC   
Sbjct: 3   DIMGYNVLRVLIWFINILAIM----GNFVVLVILISSQYKLTVPRFLMCNLAFADLCTGI 58

Query: 91  YLLLLAIKDLQSTEVYFNYAYDWQ 114
           YLLL+AIKD+Q+   Y+NYA DWQ
Sbjct: 59  YLLLIAIKDIQTKSQYYNYAIDWQ 82

Source: Brachymeles gracilis

Species: Brachymeles gracilis

Genus: Brachymeles

Family: Scincidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193610777|ref|XP_001949059.1| PREDICTED: hypothetical protein LOC100167203 [Acyrthosiphon pisum]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 47/62 (75%), Gaps = 8/62 (12%)

Query: 3  AVMSSDQARD--------ISKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTS 54
          A M+S+Q +D        IS DFLTTGRTGRRNALPDILGE+  TS ADLPD+L AL+T+
Sbjct: 35 AEMTSNQDKDVTQVQYIDISPDFLTTGRTGRRNALPDILGEHKLTSTADLPDRLQALTTN 94

Query: 55 DG 56
          +G
Sbjct: 95 EG 96

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170716328|gb|ACB31866.1| follicle stimulating hormone receptor [Varanus salvator]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 31  DILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
           DI+G N    +    + L  +    GN  VL + +S   + +VPRFL+ +LA ADLC   
Sbjct: 4   DIMGYNVLRVLIWFINILAIM----GNLVVLIILVSSQYKFTVPRFLMCNLAFADLCTGI 59

Query: 91  YLLLLAIKDLQSTEVYFNYAYDWQ 114
           YLLL+AIKD+Q+   Y+NYA DWQ
Sbjct: 60  YLLLIAIKDIQTKSQYYNYAIDWQ 83

Source: Varanus salvator

Species: Varanus salvator

Genus: Varanus

Family: Varanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392936151|gb|AFM93140.1| follicle stimulating hormone receptor, partial [Sphenomorphus solomonis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 31  DILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
           DI+G N    +    + L  +    GN  VL + +S   + +VPRFL+ +LA ADLC   
Sbjct: 4   DIMGYNILRVLIWFINILAIM----GNFVVLIILISSQYKLTVPRFLMCNLAFADLCTGI 59

Query: 91  YLLLLAIKDLQSTEVYFNYAYDWQ 114
           YLLL+AIKD+Q+   Y+NYA DWQ
Sbjct: 60  YLLLIAIKDIQTKSQYYNYAIDWQ 83

Source: Sphenomorphus solomonis

Species: Sphenomorphus solomonis

Genus: Sphenomorphus

Family: Scincidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|341932029|gb|AEL04323.1| follicle stimulating hormone receptor, partial [Plestiodon fasciatus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 31  DILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 90
           DI+G N    +    + L  +    GN  VL + +S   + +VPRFL+ +LA ADLC   
Sbjct: 3   DIMGYNILRVLIWFINILAIM----GNFVVLVILISSQYKLTVPRFLMCNLAFADLCTGI 58

Query: 91  YLLLLAIKDLQSTEVYFNYAYDWQ 114
           YLLL+AIKD+Q+   Y+NYA DWQ
Sbjct: 59  YLLLIAIKDVQTKSQYYNYAIDWQ 82

Source: Plestiodon fasciatus

Species: Plestiodon fasciatus

Genus: Plestiodon

Family: Scincidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
FB|FBgn0016650	831	Lgr1 [Drosophila melanogaster	0.5	0.070	0.6	4.8e-12
ZFIN|ZDB-GENE-020423-5	668	fshr "follicle stimulating hor	0.5	0.088	0.525	4.1e-11
UNIPROTKB|F1NGD5	693	FSHR "Follicle-stimulating hor	0.805	0.137	0.383	4.3e-11
UNIPROTKB|P79763	693	FSHR "Follicle-stimulating hor	0.805	0.137	0.383	4.3e-11
UNIPROTKB|I3L9R2	670	TSHR "Thyrotropin receptor" [S	0.822	0.144	0.386	5.3e-11
UNIPROTKB|I3LTM1	695	TSHR "Thyrotropin receptor" [S	0.822	0.139	0.386	5.6e-11
UNIPROTKB|F1N4F6	763	TSHR "Thyrotropin receptor" [B	0.822	0.127	0.386	6.4e-11
UNIPROTKB|Q27987	763	TSHR "Thyrotropin receptor" [B	0.822	0.127	0.386	6.4e-11
UNIPROTKB|Q8SPP9	764	TSHR "Thyrotropin receptor" [S	0.822	0.126	0.386	6.4e-11
UNIPROTKB|F5GYU5	764	TSHR "Thyrotropin receptor" [H	0.822	0.126	0.386	1e-10

FB|FBgn0016650 Lgr1 [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 36/60 (60%), Positives = 40/60 (66%)

Query:    56 GNAAVLAVTLS-RTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             GN AVL V LS R     VPRFL+ HLA ADLC+  YLLL+A  D  S   YFN+AYDWQ
Sbjct:   505 GNVAVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACFDAHSMGEYFNFAYDWQ 564

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016500 "protein-hormone receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

ZFIN|ZDB-GENE-020423-5 fshr "follicle stimulating hormone receptor" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query:    56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             GN  VL V L+   + +VPRFL+ HLA ADLCM  YLLL+A  D+ +   Y+NY  DWQ
Sbjct:   360 GNTVVLLVLLTSRYKLTVPRFLMCHLAFADLCMGIYLLLIAAVDIHTQSRYYNYGIDWQ 418

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NGD5 FSHR "Follicle-stimulating hormone receptor" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 38/99 (38%), Positives = 57/99 (57%)

Query:    16 DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPR 75
             DF+ + +    N   DI+G N    +    + L A++   GN  VL + +S   + +VPR
Sbjct:   343 DFVCSPKPDAFNPCEDIMGYNVLRVLIWFINIL-AIT---GNTTVLIILISSQYKLTVPR 398

Query:    76 FLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             FL+ +LA ADLC+  YLL +A  D+Q+   Y+NYA DWQ
Sbjct:   399 FLMCNLAFADLCIGIYLLFIASVDIQTKSRYYNYAIDWQ 437

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0035093 "spermatogenesis, exchange of chromosomal proteins" evidence=IEA

UNIPROTKB|P79763 FSHR "Follicle-stimulating hormone receptor" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 38/99 (38%), Positives = 57/99 (57%)

Query:    16 DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPR 75
             DF+ + +    N   DI+G N    +    + L A++   GN  VL + +S   + +VPR
Sbjct:   343 DFVCSPKPDAFNPCEDIMGYNVLRVLIWFINIL-AIT---GNTTVLIILISSQYKLTVPR 398

Query:    76 FLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             FL+ +LA ADLC+  YLL +A  D+Q+   Y+NYA DWQ
Sbjct:   399 FLMCNLAFADLCIGIYLLFIASVDIQTKSRYYNYAIDWQ 437

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0033686 "positive regulation of luteinizing hormone secretion" evidence=IEP

UNIPROTKB|I3L9R2 TSHR "Thyrotropin receptor" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query:    14 SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
             S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct:   306 SEDMVCTPKSDEFNPCEDIMGYRFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 361

Query:    74 PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct:   362 PRFLMCNLAFADFCMGMYLLLIASVDLYTQSEYYNHAIDWQ 402

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

UNIPROTKB|I3LTM1 TSHR "Thyrotropin receptor" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query:    14 SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
             S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct:   331 SEDMVCTPKSDEFNPCEDIMGYRFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 386

Query:    74 PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct:   387 PRFLMCNLAFADFCMGMYLLLIASVDLYTQSEYYNHAIDWQ 427

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0040012 "regulation of locomotion" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004996 "thyroid-stimulating hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N4F6 TSHR "Thyrotropin receptor" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query:    14 SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
             S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct:   392 SEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 447

Query:    74 PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct:   448 PRFLMCNLAFADFCMGLYLLLIASVDLYTQSEYYNHAIDWQ 488

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0040012 "regulation of locomotion" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004996 "thyroid-stimulating hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q27987 TSHR "Thyrotropin receptor" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query:    14 SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
             S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct:   392 SEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 447

Query:    74 PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct:   448 PRFLMCNLAFADFCMGLYLLLIASVDLYTQSEYYNHAIDWQ 488

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

UNIPROTKB|Q8SPP9 TSHR "Thyrotropin receptor" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query:    14 SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
             S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct:   393 SEDMVCTPKSDEFNPCEDIMGYRFLRIVVWFVSLLALL----GNVFVLVILLTSHYKLTV 448

Query:    74 PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct:   449 PRFLMCNLAFADFCMGMYLLLIASVDLYTQSEYYNHAIDWQ 489

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

UNIPROTKB|F5GYU5 TSHR "Thyrotropin receptor" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query:    14 SKDFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSV 73
             S+D + T ++   N   DI+G      V      L  L    GN  VL + L+   + +V
Sbjct:   393 SEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALL----GNVFVLLILLTSHYKLNV 448

Query:    74 PRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
             PRFL+ +LA AD CM  YLLL+A  DL +   Y+N+A DWQ
Sbjct:   449 PRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQ 489

GO:0016021 "integral to membrane" evidence=IEA

GO:0004996 "thyroid-stimulating hormone receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0030183 "B cell differentiation" evidence=IEA

GO:0040012 "regulation of locomotion" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
pfam02827	74	pfam02827, PKI, cAMP-dependent protein kinase inhi	6e-10

>gnl|CDD|145797 pfam02827, PKI, cAMP-dependent protein kinase inhibitor

 Score = 51.0 bits (122), Expect = 6e-10
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 16 DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALS 52
          DF+++GRTGRRNALPDI G +A    ++L  +L  L 
Sbjct: 9  DFISSGRTGRRNALPDIQGSSAVGGSSELALKLAELD 45

Members of this family are extremely potent competitive inhibitors of camp-dependent protein kinase activity. These proteins interact with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG2087|consensus	363		99.69
PHA03234	338	DNA packaging protein UL33; Provisional	99.37
KOG4219|consensus	423		99.23
PHA02834	323	chemokine receptor-like protein; Provisional	98.87
PHA03087	335	G protein-coupled chemokine receptor-like protein;	98.84
PHA02638	417	CC chemokine receptor-like protein; Provisional	98.79
PHA03235	409	DNA packaging protein UL33; Provisional	98.77
KOG4220|consensus	503		98.65
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.4
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	97.56
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	95.1
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	93.62
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	92.66

>KOG2087|consensus

Probab=99.69  E-value=1.2e-17  Score=134.18  Aligned_cols=98  Identities=32%  Similarity=0.336  Sum_probs=92.7

Q ss_pred             cccccCCCCCCCCCCccccchhhhhhccchhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         16 DFLTTGRTGRRNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        16 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      ...|.|.++..++|++..+...+|+    .+|++++++++||.+|++.+...+.+.++..+++.|||+||++||+++..+
T Consensus         5 ~~~C~P~~da~~pcEdllg~~~lRi----~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~i   80 (363)
T KOG2087|consen    5 VITCKPSPDAFNPCEDLLGYWILRI----SVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLI   80 (363)
T ss_pred             cceecCCCCCCCcHHHhhccceeee----hhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHH
Confidence            4678999999999999999999884    499999999999999999999888888899999999999999999999999


Q ss_pred             HHhhhhhhhhhhhccccccccC
Q psy15264         96 AIKDLQSTEVYFNYAYDWQKVK  117 (118)
Q Consensus        96 ~~~~~~~~~~Y~~~~~~W~~~~  117 (118)
                      +.+|..++++|+.|+.+||.|.
T Consensus        81 a~vD~~~~gey~~~ai~W~tg~  102 (363)
T KOG2087|consen   81 ASVDAKTRGEYYKHAIDWQTGL  102 (363)
T ss_pred             HHhhHHHHHHHHHHHHhhhhcC
Confidence            9999999999999999999986

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.37  E-value=2.9e-13  Score=107.95  Aligned_cols=71  Identities=7%  Similarity=0.043  Sum_probs=54.1

Q ss_pred             CCCCCccccchhhhhhccchhhhhhccccccchhheeee--eeccCcCCchhhHhHHHHHHHHHHHHHHHHHH
Q psy15264         26 RNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVT--LSRTSEKSVPRFLISHLAMADLCMAFYLLLLA   96 (118)
Q Consensus        26 ~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~--~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~   96 (118)
                      ..+|+.....+..+....+.+.+++++|++||++|++++  .+++++|+++|+|++|||+||+++++.+||++
T Consensus        19 ~~~c~~~~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~   91 (338)
T PHA03234         19 NASCISTPTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLT   91 (338)
T ss_pred             CCCCcCchHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347765433344444434566799999999999999955  45556689999999999999999999888764

>KOG4219|consensus

Probab=99.23  E-value=8.1e-12  Score=102.08  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=55.5

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccC
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKVK  117 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~~~~~Y~~~~~~W~~~~  117 (118)
                      +++.++++++++||++|+|+...+|++|+++|+|++|||+||++++++..+       +.-.|..| ..|.+|+
T Consensus        40 i~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~-------f~f~yal~-~~W~~G~  105 (423)
T KOG4219|consen   40 IAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTV-------FNFQYALH-QEWYFGS  105 (423)
T ss_pred             HHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHH-hcccccc
Confidence            455688899999999999999999999999999999999999999988654       45556666 4687775

>PHA02834 chemokine receptor-like protein; Provisional

Probab=98.87  E-value=1.2e-09  Score=85.95  Aligned_cols=49  Identities=24%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLL   93 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~   93 (118)
                      +.+.+++++|++||++|++++.++++ ++++|+|++|||+||+++++.+|
T Consensus        33 ~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~~lP   81 (323)
T PHA02834         33 VFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVFSFP   81 (323)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHHHHH
Confidence            45678889999999999998877554 46789999999999998755544

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=98.84  E-value=5.7e-09  Score=81.69  Aligned_cols=69  Identities=16%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             CCCCCccccchhhhhhccchhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         26 RNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        26 ~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      .++|+.................+++++|++||+++++++.++ +.|++.|+++.|||++|++.++..|+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~   95 (335)
T PHA03087         27 YADCDLNIGYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQ   95 (335)
T ss_pred             CCCCCccccccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHH
Confidence            466765443322222212345678899999999999999888 889999999999999999887765543

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=98.79  E-value=3.3e-09  Score=86.98  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=43.4

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      ..+++++++|++||++|++++.+ |++|+++|++++|||++|+++++.+|.+
T Consensus       103 ~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~lPf~  153 (417)
T PHA02638        103 IFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDFPFI  153 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999987654 7788999999999999999987766655

>PHA03235 DNA packaging protein UL33; Provisional

Probab=98.77  E-value=5.2e-09  Score=85.74  Aligned_cols=69  Identities=20%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             CCCCccccchhhhhhccchhhhhhccccccchhheeeeee-cc-CcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         27 NALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLS-RT-SEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        27 ~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~-~~-~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      ++|+........+.+..+.+.+++++|++||++|++++.+ +| ++++.+|+|++|||+||+++.+++|..
T Consensus        20 ~~c~~~~~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~   90 (409)
T PHA03235         20 DTCVPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFI   90 (409)
T ss_pred             CCCCchhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            3465433333344443355678899999999999997543 22 334667899999999999986665544

>KOG4220|consensus

Probab=98.65  E-value=1.2e-08  Score=84.28  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=46.5

Q ss_pred             hhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         46 DQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        46 ~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      ...+.++.++||++|++.+...|+++++.|||+++||+||+..|++.+++
T Consensus        37 ~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl   86 (503)
T KOG4220|consen   37 TGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNL   86 (503)
T ss_pred             hhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechH
Confidence            34778899999999999999999999999999999999999999988877

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.40  E-value=1.3e-07  Score=68.47  Aligned_cols=46  Identities=28%  Similarity=0.416  Sum_probs=40.2

Q ss_pred             cchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q psy15264         56 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQ  101 (118)
Q Consensus        56 GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~  101 (118)
                      ||+++++++.++|+++++.+++++|||++|++.++..+|..+....
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~   46 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL   46 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccc
Confidence            8999999999999999999999999999999999988887655433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.56  E-value=4.6e-05  Score=58.66  Aligned_cols=46  Identities=24%  Similarity=0.184  Sum_probs=41.5

Q ss_pred             hccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         50 ALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        50 ~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      +++|++||...+.+..++|++|++.++++..+|++|++......+-
T Consensus         1 ~~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~   46 (257)
T PF10320_consen    1 FIIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPF   46 (257)
T ss_pred             CEEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHH
Confidence            4689999999999999999999999999999999999987765554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.10  E-value=0.012  Score=45.74  Aligned_cols=52  Identities=17%  Similarity=0.099  Sum_probs=42.0

Q ss_pred             hhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         48 LGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        48 ~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      ++.++|+++|.+-+.++.|+.-+.+++|.++.-.|++|++..+...+..+..
T Consensus         5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~   56 (318)
T PF10324_consen    5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFF   56 (318)
T ss_pred             EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999987654455899999999999999887766655433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=93.62  E-value=0.049  Score=43.07  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             hhhhhccccccchhheeeee---eccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy15264         46 DQLGALSTSDGNAAVLAVTL---SRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST  103 (118)
Q Consensus        46 ~~~i~~~gl~GN~lvl~~~~---~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~~~~~  103 (118)
                      ..+.+++|++||+.++.+-.   +++|+.++.+..+.+||++.++.-.......+....+.
T Consensus        13 ~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~   73 (303)
T PF05296_consen   13 LVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFP   73 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45678999999999887754   45566789999999999999998777665555554433

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.66  E-value=0.055  Score=41.55  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             hhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHH
Q psy15264         49 GALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLL   93 (118)
Q Consensus        49 i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~   93 (118)
                      +.++|++-|.++++...+.+++|++-+..-.|.|++|.+....-.
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l   47 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFL   47 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999998876443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	2e-04
1cmk_I	26	CAMP-dependent protein kinase inhibitor, alpha for	6e-04

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDW 113
           GN  V+ V   +   +S+      HL++ADL     L   A+          +   +W
Sbjct: 65  GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV----------DAVANW 112

>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens} Length = 26

 Score = 33.9 bits (77), Expect = 6e-04
 Identities = 13/18 (72%), Positives = 16/18 (88%)

Query: 16 DFLTTGRTGRRNALPDIL 33
          DF+ +GRTGRRNA+ DIL
Sbjct: 5  DFIASGRTGRRNAIHDIL 22

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.31
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.26
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.12
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.1
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.06
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.06
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.02
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.01
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	98.95
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	98.93
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	98.93
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	98.9
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	98.86
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	98.86
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	98.78
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	98.74
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	98.74
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	98.68
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.73

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.31  E-value=5.2e-13  Score=99.76  Aligned_cols=53  Identities=32%  Similarity=0.335  Sum_probs=47.4

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLA   96 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~   96 (118)
                      +.+.+++++|++||++|++++.++|++|+++|+|++|||+||+++++.+|+..
T Consensus        16 i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~   68 (296)
T 2lnl_A           16 IAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWA   68 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence            44568889999999999999999999999999999999999999988876653

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.26  E-value=1.4e-12  Score=105.69  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             chhhhhhccccccchhheeeeeeccCc---CCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSE---KSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~---~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +++.+++++|++||++|++++.++|++   ++++|+|++|||+||++++++.+|..+.+
T Consensus        37 ~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~   95 (510)
T 4grv_A           37 AIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYN   95 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678899999999999998877644   47899999999999999999888775544

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.12  E-value=1.2e-11  Score=97.86  Aligned_cols=69  Identities=19%  Similarity=0.064  Sum_probs=52.3

Q ss_pred             CCCCccccchhhhhhccchhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHH
Q psy15264         27 NALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL   95 (118)
Q Consensus        27 ~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~   95 (118)
                      ++|+..........+..+++.+++++|++||++|++++.+++++++++|+|++|||++|+++++.+|..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~p~~  104 (502)
T 3odu_A           36 EPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFW  104 (502)
T ss_dssp             -CCCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456543333333333234556888999999999999999999999999999999999999997655543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.10  E-value=1.3e-11  Score=100.09  Aligned_cols=56  Identities=16%  Similarity=0.007  Sum_probs=50.9

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +++++++++|++||++|++++.+++++|+++|+|++|||+||++++++.+|..+..
T Consensus        68 ~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~  123 (520)
T 3v2y_A           68 VVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS  123 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45568899999999999999999999999999999999999999999998887665

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.06  E-value=3.3e-11  Score=94.76  Aligned_cols=55  Identities=24%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIK   98 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~   98 (118)
                      +++.+++++|++||++|++++.+++++++++|+|++|||++|++++++..|..+.
T Consensus        43 ~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~   97 (481)
T 3pbl_A           43 LSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVY   97 (481)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566888999999999999999999999999999999999999998877776443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.06  E-value=2.4e-11  Score=97.68  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=48.6

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +++.+++++|++||++|++++.+++++++++|+|++|||+||++++++..|..+..
T Consensus        45 ~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~  100 (500)
T 2rh1_A           45 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAH  100 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568889999999999999999899999999999999999999988777665443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.02  E-value=1.4e-10  Score=87.29  Aligned_cols=56  Identities=21%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +.+.+++++|++||+++++++.+++++|+++|++++|||++|+++++..+|..+..
T Consensus        43 ~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~   98 (349)
T 1u19_A           43 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT   98 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHH
Confidence            44568889999999999999999999999999999999999999998877765443

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.01  E-value=1.9e-10  Score=87.54  Aligned_cols=54  Identities=19%  Similarity=0.332  Sum_probs=47.1

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAI   97 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~   97 (118)
                      +.+.+++++|++||+++++++.++|++|+++|++++|||++|+++++...|..+
T Consensus        37 ~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~   90 (364)
T 2ks9_A           37 AAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNF   90 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345688899999999999999999999999999999999999998877666543

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=98.95  E-value=1.1e-10  Score=91.92  Aligned_cols=53  Identities=17%  Similarity=0.028  Sum_probs=46.8

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLA   96 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~   96 (118)
                      +++.+++++|++||++|++++.+++++++++|+|++|||+||+++++++|+..
T Consensus        25 ~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~   77 (484)
T 3vw7_A           25 SVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKI   77 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568889999999999999999999999999999999999999987766553

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=98.93  E-value=2.3e-10  Score=89.47  Aligned_cols=56  Identities=23%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +++.+++++|++||+++++++.+++++++++|+|++|||+||++++++..|..+..
T Consensus        28 ~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~   83 (467)
T 3uon_A           28 LVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLY   83 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568889999999999999998888999999999999999999988777664433

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=98.93  E-value=2.9e-10  Score=88.63  Aligned_cols=51  Identities=24%  Similarity=0.147  Sum_probs=45.4

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLL   94 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~   94 (118)
                      +++.+++++|++||+++++++.+++++++++|+|++|||++|+++++.+|+
T Consensus        22 ~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~p~   72 (464)
T 4dkl_A           22 ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPF   72 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445688899999999999999999999999999999999999998887443

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=98.90  E-value=2.1e-10  Score=89.13  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIK   98 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~   98 (118)
                      +++.+++++|++||+++++++.+++++++++|++++|||++|+++++...|..+.
T Consensus        36 ~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~   90 (447)
T 4eiy_A           36 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT   90 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888999999999999999988899999999999999999998777766443

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=98.86  E-value=4.8e-10  Score=87.87  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIK   98 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~   98 (118)
                      +++.+++++|++||+++++++.+++++++++|+|++|||+||++++++..|..+.
T Consensus        26 ~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~   80 (488)
T 3eml_A           26 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT   80 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888999999999999999999899999999999999999998877776544

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=98.86  E-value=4.7e-10  Score=87.30  Aligned_cols=56  Identities=23%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +++.+++++|++||+++++++.+++++++++|+|++|||++|+++++...|..+..
T Consensus        13 ~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~   68 (452)
T 3rze_A           13 VVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILY   68 (452)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568889999999999999999999999999999999999999988777665443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=98.78  E-value=8e-10  Score=86.92  Aligned_cols=49  Identities=16%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL   92 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l   92 (118)
                      ++..+++++|++||+++++++.++|++|+++|++++|||++|++++++.
T Consensus        39 i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~   87 (448)
T 2z73_A           39 IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVN   87 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHH
Confidence            3456888999999999999999988889999999999999999988753

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=98.74  E-value=1.1e-09  Score=88.22  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=48.8

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +.+.+++++|++||++|++++.+++++|+++|++++|||+||+++++...|..+..
T Consensus       187 i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~  242 (514)
T 3sn6_R          187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAH  242 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            44568889999999999999999899999999999999999999988777765544

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=98.74  E-value=4.6e-10  Score=82.95  Aligned_cols=54  Identities=26%  Similarity=0.307  Sum_probs=46.6

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHH
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAI   97 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~   97 (118)
                      +.+.+++++|++||+++++++.+++++++++|++++|||++|++.++...|..+
T Consensus        16 ~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~   69 (315)
T 4amj_A           16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA   69 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence            345678899999999999999999999999999999999999998776665543

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.73  E-value=6.7e-06  Score=50.81  Aligned_cols=44  Identities=14%  Similarity=0.033  Sum_probs=29.6

Q ss_pred             CCCCCccccchhhhhhccchhhhhhccccccchhheeeeeeccCc
Q psy15264         26 RNALPDILGENARTSVADLPDQLGALSTSDGNAAVLAVTLSRTSE   70 (118)
Q Consensus        26 ~~~c~~~~~~~~~~~~~~~~~~~i~~~gl~GN~lvl~~~~~~~~~   70 (118)
                      .++|+........+ +..++++++|++|++||++|+|++.++|..
T Consensus        16 ~~~C~~~~~~~~~~-~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           16 QSECEYTDWKSSGA-LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             CCSSSTTTHHHHCS-SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             CCCCcchhhhhHHh-HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence            34676432222222 323456799999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	1e-07

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 56  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 114
            N   L VT+     ++   +++ +LA+ADL M F      +         F       
Sbjct: 54  INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNL 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.11

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=1.6e-11  Score=91.06  Aligned_cols=56  Identities=21%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             chhhhhhccccccchhheeeeeeccCcCCchhhHhHHHHHHHHHHHHHHHHHHHhh
Q psy15264         44 LPDQLGALSTSDGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKD   99 (118)
Q Consensus        44 ~~~~~i~~~gl~GN~lvl~~~~~~~~~~~~~n~~l~nLAvaDll~~~~l~~~~~~~   99 (118)
                      +.+.+++++|++||+++++++.++|++|++.|++++|||+||+++++...|..+.+
T Consensus        42 ~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~   97 (348)
T d1u19a_          42 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT   97 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44567889999999999999999999999999999999999999988877765544