Psyllid ID: psy15268
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ULT8 | 2610 | E3 ubiquitin-protein liga | yes | N/A | 0.960 | 0.094 | 0.670 | 1e-87 | |
| Q69ZR2 | 2618 | E3 ubiquitin-protein liga | yes | N/A | 0.953 | 0.093 | 0.661 | 4e-87 | |
| Q9LYZ7 | 1502 | E3 ubiquitin-protein liga | yes | N/A | 0.613 | 0.104 | 0.272 | 3e-08 | |
| F1RCR6 | 2026 | E3 ubiquitin-protein liga | no | N/A | 0.535 | 0.067 | 0.245 | 3e-06 | |
| G5E870 | 2025 | E3 ubiquitin-protein liga | no | N/A | 0.789 | 0.099 | 0.210 | 6e-06 | |
| E1B7Q7 | 1992 | E3 ubiquitin-protein liga | no | N/A | 0.789 | 0.101 | 0.210 | 7e-06 | |
| B4F6W9 | 2056 | E3 ubiquitin-protein liga | no | N/A | 0.535 | 0.066 | 0.245 | 7e-06 | |
| F1LP64 | 2025 | E3 ubiquitin-protein liga | no | N/A | 0.789 | 0.099 | 0.210 | 7e-06 | |
| Q14669 | 1992 | E3 ubiquitin-protein liga | no | N/A | 0.789 | 0.101 | 0.210 | 7e-06 | |
| Q6WWW4 | 1888 | E3 ubiquitin-protein liga | no | N/A | 0.777 | 0.105 | 0.247 | 1e-05 |
| >sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 322 bits (826), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/249 (67%), Positives = 198/249 (79%), Gaps = 3/249 (1%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DL
Sbjct: 61 FLDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEP
Sbjct: 120 AEQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R
Sbjct: 180 QDSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSR 239
Query: 181 LSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDL 240
++ A G+ +S ST A T A ++K S+ VSTIVSLLS LCRGSP +T DL
Sbjct: 240 MAAAGGTVSGPSSACKPGRSTTGAPSTTA-DSKLSN-QVSTIVSLLSTLCRGSPVVTHDL 297
Query: 241 LHSDLPDAI 249
L S+LPD+I
Sbjct: 298 LRSELPDSI 306
|
Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. May be required for development of the head mesenchyme and neural tube closure. Homo sapiens (taxid: 9606) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 166/251 (66%), Positives = 200/251 (79%), Gaps = 7/251 (2%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DL
Sbjct: 61 FLDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEP
Sbjct: 120 AEQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R
Sbjct: 180 QDSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSR 239
Query: 181 LSNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITS 238
++ A G S P + G + + A ++ A ++K S+ VSTIVSLLS LCRGSP +T
Sbjct: 240 MAAAGGTVSGPSSACKPGRSTTGAPSA---AADSKLSN-QVSTIVSLLSTLCRGSPLVTH 295
Query: 239 DLLHSDLPDAI 249
DLL S+LPD+I
Sbjct: 296 DLLRSELPDSI 306
|
Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in development of the head mesenchyme and neural tube closure. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ + RA+TY DV +V D + A+C RL + D+AEQC++ L
Sbjct: 169 DIMLLAIRAITYLCDVYPPSVEFLVRHD-TIPALCQRL------LTIEYLDVAEQCLQAL 221
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ-LPE 127
E I E + AG + +VL FI S+ + A++ V +C ++ + P +
Sbjct: 222 EKISRDEPVACLNAGAIMAVLSFIDFFSTSIQR----VAISTVVNICKQLSSESPSPFMD 277
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASE 176
AV L LL++ED + + C ++D+ + L +HGL +E
Sbjct: 278 AVPILCTLLQYEDRQLVENVAICLTKIADQASESPAMLDQLCRHGLINE 326
|
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ +RA+TY ++ + V +D A+ +L + I D+AEQ + L
Sbjct: 536 DIMNHASRALTYMMEALPRSS--AVVVD-AIPVFLEKLQVIQFI------DVAEQALTAL 586
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PE 127
E++ R + ++ +AGGLA LL+++ + ++ A+A+ + C + P + +
Sbjct: 587 EMLSRRHSKAILQAGGLADCLLYLEFFSINAQRN----ALAIAANCCQSITPDEFHFVAD 642
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRF 158
++ L+ L H+D ++ CFA L D F
Sbjct: 643 SLPLLTQRLTHQDKKSVESTCLCFARLVDNF 673
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ RA+TY ++ + V +D A+ +L + I D+AEQ + L
Sbjct: 502 DIMNHACRALTYMMEALPRSS--AVVVD-AIPVFLEKLQVIQCI------DVAEQALTAL 552
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PE 127
E++ R + ++ +AGGLA LL+++ + ++ A+A+ + C + P + +
Sbjct: 553 EMLSRRHSKAILQAGGLADCLLYLEFFSINAQRN----ALAIAANCCQSITPDEFHFVAD 608
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGS 187
++ L+ L H+D ++ CFA L D F QH E L++
Sbjct: 609 SLPLLTQRLTHQDKKSVESTCLCFARLVDNF-----------QH---EENLLQ------- 647
Query: 188 NPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPD 247
+ ++ T + T SSG +V + S +C P++ L+ ++ +
Sbjct: 648 -----QVASKDLLTNVQQLLVVTPPILSSGMFIMVVRMFSLMCSNCPTLAVQLMKQNIAE 702
Query: 248 AI 249
+
Sbjct: 703 TL 704
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ RA+TY ++ + V +D A+ +L + I D+AEQ + L
Sbjct: 496 DIMNHACRALTYMMEALPRSS--AVVVD-AIPVFLEKLQVIQCI------DVAEQALTAL 546
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PE 127
E++ R + ++ +AGGLA LL+++ + ++ A+A+ + C + P + +
Sbjct: 547 EMLSRRHSKAILQAGGLADCLLYLEFFSINAQRN----ALAIAANCCQSITPDEFHFVAD 602
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGS 187
++ L+ L H+D ++ CFA L D F QH E L++
Sbjct: 603 SLPLLTQRLTHQDKKSVESTCLCFARLVDNF-----------QH---EENLLQ------- 641
Query: 188 NPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPD 247
+ ++ T + T SSG +V + S +C P++ L+ ++ +
Sbjct: 642 -----QVASKDLLTNVQQLLVVTPPILSSGMFIMVVRMFSLMCSNCPTLAVQLMKQNIAE 696
Query: 248 AI 249
+
Sbjct: 697 TL 698
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ RA+TY ++ + V +D A+ +L + I D+AEQ + L
Sbjct: 538 DIMNHACRALTYMMEALPRSS--AVVVD-AIPVFLEKLQVIQCI------DVAEQALTAL 588
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PE 127
E++ R + ++ +AGGLA LL+++ + ++ A+A+ + C + P + +
Sbjct: 589 EMLSRRHSKAILQAGGLADCLLYLEFFSINAQRN----ALAIAANCCQSISPDEFHFVAD 644
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRF 158
++ L+ L H+D ++ CFA L D F
Sbjct: 645 SLPLLTQRLTHQDKKSVESTCLCFARLVDNF 675
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Xenopus tropicalis (taxid: 8364) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ RA+TY ++ + V +D A+ +L + I D+AEQ + L
Sbjct: 502 DIMNHACRALTYMMEALPRSS--AVVVD-AIPVFLEKLQVIQCI------DVAEQALTAL 552
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PE 127
E++ R + ++ +AGGLA LL+++ + ++ A+A+ + C + P + +
Sbjct: 553 EMLSRRHSKAILQAGGLADCLLYLEFFSINAQRN----ALAIAANCCQSITPDEFHFVAD 608
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGS 187
++ L+ L H+D ++ CFA L D F QH E L++
Sbjct: 609 SLPLLTQRLTHQDKKSVESTCLCFARLVDNF-----------QH---EENLLQ------- 647
Query: 188 NPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPD 247
+ ++ T + T SSG +V + S +C P++ L+ ++ +
Sbjct: 648 -----QVASKDLLTNVQQLLVVTPPILSSGMFIMVVRMFSLMCSNCPTLAVQLMKQNIAE 702
Query: 248 AI 249
+
Sbjct: 703 TL 704
|
E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVL 68
+++ RA+TY ++ + V +D A+ +L + I D+AEQ + L
Sbjct: 496 DIMNHACRALTYMMEALPRSS--AVVVD-AIPVFLEKLQVIQCI------DVAEQALTAL 546
Query: 69 ELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PE 127
E++ R + ++ +AGGLA LL+++ + ++ A+A+ + C + P + +
Sbjct: 547 EMLSRRHSKAILQAGGLADCLLYLEFFSINAQRN----ALAIAANCCQSITPDEFHFVAD 602
Query: 128 AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGS 187
++ L+ L H+D ++ CFA L D F QH E L++
Sbjct: 603 SLPLLTQRLTHQDKKSVESTCLCFARLVDNF-----------QH---EENLLQ------- 641
Query: 188 NPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPD 247
+ ++ T + T SSG +V + S +C P++ L+ ++ +
Sbjct: 642 -----QVASKDLLTNVQQLLVVTPPILSSGMFIMVVRMFSLMCSNCPTLAVQLMKQNIAE 696
Query: 248 AI 249
+
Sbjct: 697 TL 698
|
Component of PA700, an ATP-dependent multisubunit protein that activates the proteolytic activities of the multifunctional proteinase (20S proteasome) of the 26S complex. Specifically interacts with the ligand binding domain of the thyroid hormone receptor (in a thyroid hormone T3-independent manner) and with retinoid X receptor (RXR). Could be E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
+L+ + +++ + ARA+T+ DV +V GA+ + +RL + DL
Sbjct: 245 LLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHY-GAVSCLVARL------LTIEYMDL 297
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQ ++ L+ I + AG L +VL ++ V + A++ + +C K+ P
Sbjct: 298 AEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQR----VALSTAANMCKKL-P 352
Query: 121 QDPQ--LPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASEL- 177
D + EAV L+ LL++ D+ + + A C +++ F L HGL ++
Sbjct: 353 SDASDYVMEAVPLLTNLLQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAA 412
Query: 178 -LIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP 234
LI SN+ G G A++S ++ +G ++ LLS GSP
Sbjct: 413 SLISTSNSGG--------GQASLSVSTYTG---------------LIRLLSTCASGSP 447
|
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| 189236840 | 2609 | PREDICTED: similar to hect E3 ubiquitin | 0.957 | 0.093 | 0.711 | 2e-96 | |
| 270005044 | 2552 | hypothetical protein TcasGA2_TC007046 [T | 0.957 | 0.096 | 0.711 | 2e-96 | |
| 242008012 | 2686 | hect E3 ubiquitin ligase, putative [Pedi | 0.937 | 0.089 | 0.723 | 3e-94 | |
| 242026118 | 266 | conserved hypothetical protein [Pediculu | 0.937 | 0.902 | 0.723 | 2e-93 | |
| 307166390 | 2551 | E3 ubiquitin-protein ligase HECTD1 [Camp | 0.960 | 0.096 | 0.691 | 4e-91 | |
| 307197829 | 2600 | E3 ubiquitin-protein ligase HECTD1 [Harp | 0.960 | 0.094 | 0.691 | 4e-90 | |
| 345495040 | 2621 | PREDICTED: E3 ubiquitin-protein ligase H | 0.964 | 0.094 | 0.691 | 8e-90 | |
| 345495044 | 2608 | PREDICTED: E3 ubiquitin-protein ligase H | 0.964 | 0.094 | 0.691 | 8e-90 | |
| 345495042 | 2506 | PREDICTED: E3 ubiquitin-protein ligase H | 0.964 | 0.098 | 0.691 | 8e-90 | |
| 350419570 | 2495 | PREDICTED: E3 ubiquitin-protein ligase H | 0.968 | 0.099 | 0.669 | 4e-89 |
| >gi|189236840|ref|XP_001813187.1| PREDICTED: similar to hect E3 ubiquitin ligase [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 180/253 (71%), Positives = 216/253 (85%), Gaps = 8/253 (3%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ APENVLEVTARA+TYYLDVSAECTRRIVAI+GA++AIC+RL + A ++SRTSKDL
Sbjct: 64 FLDEQAPENVLEVTARAITYYLDVSAECTRRIVAIEGAVRAICNRLVV-AELSSRTSKDL 122
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQC+KVLELICTREAG+VF+AGGL+++L FI+ +G+ VHKDTLHSAMAVVSRLC+KMEP
Sbjct: 123 AEQCVKVLELICTREAGAVFDAGGLSAILPFIRDNGNRVHKDTLHSAMAVVSRLCTKMEP 182
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
D QLP V+ALS LLRHED+H++D ALRCFAS++DRFTRRGVDPAPLAQHGL +ELL R
Sbjct: 183 ADVQLPTCVQALSTLLRHEDSHVADGALRCFASVADRFTRRGVDPAPLAQHGLVNELLSR 242
Query: 181 LSNAAGSNPLNTSLGGANVSTASASGTLAT----EAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG + + G N S ++S T AT +AKA++ SVSTI+SLLS LCRGSP+I
Sbjct: 243 LSNAAGP---SVATGTQNTSGKASSTTNATAAVPDAKATAASVSTIISLLSTLCRGSPAI 299
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 300 THDLLRSELPDAI 312
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270005044|gb|EFA01492.1| hypothetical protein TcasGA2_TC007046 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 180/253 (71%), Positives = 216/253 (85%), Gaps = 8/253 (3%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ APENVLEVTARA+TYYLDVSAECTRRIVAI+GA++AIC+RL + A ++SRTSKDL
Sbjct: 61 FLDEQAPENVLEVTARAITYYLDVSAECTRRIVAIEGAVRAICNRLVV-AELSSRTSKDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQC+KVLELICTREAG+VF+AGGL+++L FI+ +G+ VHKDTLHSAMAVVSRLC+KMEP
Sbjct: 120 AEQCVKVLELICTREAGAVFDAGGLSAILPFIRDNGNRVHKDTLHSAMAVVSRLCTKMEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
D QLP V+ALS LLRHED+H++D ALRCFAS++DRFTRRGVDPAPLAQHGL +ELL R
Sbjct: 180 ADVQLPTCVQALSTLLRHEDSHVADGALRCFASVADRFTRRGVDPAPLAQHGLVNELLSR 239
Query: 181 LSNAAGSNPLNTSLGGANVSTASASGTLAT----EAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG + + G N S ++S T AT +AKA++ SVSTI+SLLS LCRGSP+I
Sbjct: 240 LSNAAGP---SVATGTQNTSGKASSTTNATAAVPDAKATAASVSTIISLLSTLCRGSPAI 296
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 297 THDLLRSELPDAI 309
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242008012|ref|XP_002424807.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis] gi|212508345|gb|EEB12069.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 183/253 (72%), Positives = 204/253 (80%), Gaps = 13/253 (5%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ AP+NVLEVTARA+TYYLDVSAECTRRI+AIDGA+KAIC+RL + + + RTSKDL
Sbjct: 61 FLDECAPDNVLEVTARAITYYLDVSAECTRRIIAIDGAVKAICNRLVV-SDFSERTSKDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLELIC REAG+VFE GGL VL+FI+ +G VHKDTLHSAMAVVSRLC+KMEP
Sbjct: 120 AEQCIKVLELICVREAGAVFEGGGLGCVLMFIRDNGWRVHKDTLHSAMAVVSRLCTKMEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP VEALS LL+HEDTH+SD ALRCFASLSDRFTRRGVDPAPLA+HGL +ELL R
Sbjct: 180 QDSSLPACVEALSTLLKHEDTHVSDGALRCFASLSDRFTRRGVDPAPLAEHGLVNELLSR 239
Query: 181 LSNAAGSNPLNTSLG----GANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG P + G GAN ST+ A E S SVSTI+SLLSALCRGS SI
Sbjct: 240 LSNAAG--PAAVTNGPVTLGANTSTS------APETTKCSSSVSTIISLLSALCRGSHSI 291
Query: 237 TSDLLHSDLPDAI 249
T DLL S LPDAI
Sbjct: 292 THDLLRSQLPDAI 304
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242026118|ref|XP_002433268.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518890|gb|EEB20530.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 183/253 (72%), Positives = 204/253 (80%), Gaps = 13/253 (5%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ AP+NVLEVTARA+TYYLDVSAECTRRI+AIDGA+KAIC+RL + + + RTSKDL
Sbjct: 14 FLDECAPDNVLEVTARAITYYLDVSAECTRRIIAIDGAVKAICNRLVV-SDFSERTSKDL 72
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLELIC REAG+VFE GGL VL+FI+ +G VHKDTLHSAMAVVSRLC+KMEP
Sbjct: 73 AEQCIKVLELICVREAGAVFEGGGLGCVLMFIRDNGWRVHKDTLHSAMAVVSRLCTKMEP 132
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP VEALS LL+HEDTH+SD ALRCFASLSDRFTRRGVDPAPLA+HGL +ELL R
Sbjct: 133 QDSSLPACVEALSTLLKHEDTHVSDGALRCFASLSDRFTRRGVDPAPLAEHGLVNELLSR 192
Query: 181 LSNAAGSNPLNTSLG----GANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG P + G GAN ST+ A E S SVSTI+SLLSALCRGS SI
Sbjct: 193 LSNAAG--PAAVTNGPVTLGANTSTS------APETTKCSSSVSTIISLLSALCRGSHSI 244
Query: 237 TSDLLHSDLPDAI 249
T DLL S LPDAI
Sbjct: 245 THDLLRSQLPDAI 257
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307166390|gb|EFN60527.1| E3 ubiquitin-protein ligase HECTD1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 205/253 (81%), Gaps = 7/253 (2%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ P++VLEVTARA+TYYLDVSAECTRR+VA++GA+KAICSRLS GAG+ SR S+DL
Sbjct: 61 FLDELVPDSVLEVTARAITYYLDVSAECTRRVVAMEGAVKAICSRLS-GAGLGSRASRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLEL+C REAG+VFEAGGL L FI++HG VH+DTLHSAMAVV+RLC K+EP
Sbjct: 120 AEQCIKVLELVCAREAGAVFEAGGLPCALCFIREHGARVHRDTLHSAMAVVTRLCGKVEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP+ VEALS+LLRHED H++D ALRCFASL+DRF+RRG DPAPLA +GL SELL R
Sbjct: 180 QDKALPDCVEALSVLLRHEDAHVADGALRCFASLADRFSRRGTDPAPLASNGLVSELLYR 239
Query: 181 LSNAAGSNPLNTSLGGANVSTASASGTLAT----EAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG +T+ +N T S T+ T E K S SVSTI+SLLS LCRGSPSI
Sbjct: 240 LSNAAGPG-TSTTATCSNPKTPPPSSTITTVPAPEPK-SCASVSTIISLLSTLCRGSPSI 297
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 298 THDLLRSELPDAI 310
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307197829|gb|EFN78940.1| E3 ubiquitin-protein ligase HECTD1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 203/253 (80%), Gaps = 7/253 (2%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ P++VLEVTARA+TYYLDVSAECTRR+VA++GA+KAICSRLS GAG+ SR S+DL
Sbjct: 49 FLDELVPDSVLEVTARAITYYLDVSAECTRRVVAMEGAVKAICSRLS-GAGLGSRASRDL 107
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLEL+C REAG+VFEAGGL L FI++HG VH+DTLHSAMAVV+RLC K+EP
Sbjct: 108 AEQCIKVLELVCAREAGAVFEAGGLPCALCFIREHGARVHRDTLHSAMAVVTRLCGKVEP 167
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP+ VEALS+LLRHED H++D ALRCFASL+DRF+RRG DPAPLA +GL SELL R
Sbjct: 168 QDKALPDCVEALSVLLRHEDAHVADGALRCFASLADRFSRRGTDPAPLASNGLVSELLYR 227
Query: 181 LSNAAGSNPLNTSLGGANVSTASASGTLAT----EAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG T+ +N T S T T E K S SVSTI+SLLS LCRGSPSI
Sbjct: 228 LSNAAGPGTSATAT-CSNPKTPPPSSTATTVPAPEPK-SCASVSTIISLLSTLCRGSPSI 285
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 286 THDLLRSELPDAI 298
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495040|ref|XP_003427422.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 205/253 (81%), Gaps = 6/253 (2%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ AP++VLEVTARA+TYYLDVSAECTRR+VA++GA+KAICSRLS AG+ SR S+DL
Sbjct: 61 FLDELAPDSVLEVTARAITYYLDVSAECTRRVVAMEGAIKAICSRLSC-AGLGSRASRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLEL+C REAG+VFEAGGL L FI++HG VH+DTLHSAMAVVSRLC K+EP
Sbjct: 120 AEQCIKVLELVCAREAGAVFEAGGLPCALSFIREHGAQVHRDTLHSAMAVVSRLCGKVEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP+ VEALS LLRHED H++D ALRCFASL+DRF+RRG DPAPLA +GL SELL R
Sbjct: 180 QDKSLPDCVEALSTLLRHEDAHVADGALRCFASLADRFSRRGTDPAPLACNGLVSELLYR 239
Query: 181 LSNAAGS-NPLNTSLGGAN---VSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG + +NT+ G + +A+ A EAK S SVSTI+SLLS LCRGS SI
Sbjct: 240 LSNAAGPISSINTTPGNPKTPPTPSVAATTIPAPEAK-SCASVSTIISLLSTLCRGSASI 298
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 299 THDLLRSELPDAI 311
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495044|ref|XP_001605880.2| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 205/253 (81%), Gaps = 6/253 (2%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ AP++VLEVTARA+TYYLDVSAECTRR+VA++GA+KAICSRLS AG+ SR S+DL
Sbjct: 61 FLDELAPDSVLEVTARAITYYLDVSAECTRRVVAMEGAIKAICSRLSC-AGLGSRASRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLEL+C REAG+VFEAGGL L FI++HG VH+DTLHSAMAVVSRLC K+EP
Sbjct: 120 AEQCIKVLELVCAREAGAVFEAGGLPCALSFIREHGAQVHRDTLHSAMAVVSRLCGKVEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP+ VEALS LLRHED H++D ALRCFASL+DRF+RRG DPAPLA +GL SELL R
Sbjct: 180 QDKSLPDCVEALSTLLRHEDAHVADGALRCFASLADRFSRRGTDPAPLACNGLVSELLYR 239
Query: 181 LSNAAGS-NPLNTSLGGAN---VSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG + +NT+ G + +A+ A EAK S SVSTI+SLLS LCRGS SI
Sbjct: 240 LSNAAGPISSINTTPGNPKTPPTPSVAATTIPAPEAK-SCASVSTIISLLSTLCRGSASI 298
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 299 THDLLRSELPDAI 311
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495042|ref|XP_003427423.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/253 (69%), Positives = 205/253 (81%), Gaps = 6/253 (2%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ AP++VLEVTARA+TYYLDVSAECTRR+VA++GA+KAICSRLS AG+ SR S+DL
Sbjct: 61 FLDELAPDSVLEVTARAITYYLDVSAECTRRVVAMEGAIKAICSRLSC-AGLGSRASRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIKVLEL+C REAG+VFEAGGL L FI++HG VH+DTLHSAMAVVSRLC K+EP
Sbjct: 120 AEQCIKVLELVCAREAGAVFEAGGLPCALSFIREHGAQVHRDTLHSAMAVVSRLCGKVEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP+ VEALS LLRHED H++D ALRCFASL+DRF+RRG DPAPLA +GL SELL R
Sbjct: 180 QDKSLPDCVEALSTLLRHEDAHVADGALRCFASLADRFSRRGTDPAPLACNGLVSELLYR 239
Query: 181 LSNAAGS-NPLNTSLGGAN---VSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236
LSNAAG + +NT+ G + +A+ A EAK S SVSTI+SLLS LCRGS SI
Sbjct: 240 LSNAAGPISSINTTPGNPKTPPTPSVAATTIPAPEAK-SCASVSTIISLLSTLCRGSASI 298
Query: 237 TSDLLHSDLPDAI 249
T DLL S+LPDAI
Sbjct: 299 THDLLRSELPDAI 311
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350419570|ref|XP_003492229.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 168/251 (66%), Positives = 199/251 (79%), Gaps = 3/251 (1%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
LD+ AP++VLEVTARA+TYY D+S EC RR++A++GA+KAICSRLS GAG+ SRTS+DL
Sbjct: 61 FLDELAPDSVLEVTARAITYYFDLSPECIRRVIAMEGAVKAICSRLS-GAGLGSRTSRDL 119
Query: 61 AEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP 120
AEQCIK LEL+C REAG+V EAGGL L FI++HG VH+DTLHSAMAVV+RLC K+EP
Sbjct: 120 AEQCIKALELVCAREAGAVLEAGGLPCALCFIREHGALVHRDTLHSAMAVVTRLCGKVEP 179
Query: 121 QDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIR 180
QD LP+ VEALS+LLRHED H++D ALRCFASL+DRF+RR DPAPLA HGL SELL R
Sbjct: 180 QDKSLPDCVEALSMLLRHEDAHVADGALRCFASLADRFSRRNTDPAPLASHGLVSELLYR 239
Query: 181 LSNAAG-SNPLNTSLGGANVSTASASG-TLATEAKASSGSVSTIVSLLSALCRGSPSITS 238
LSNAAG + T+ G S++ TL T S SVSTI+SLLS LCRGSPSIT
Sbjct: 240 LSNAAGPGTSIATTSGNPKTPPPSSTATTLPTPEANSCASVSTIISLLSTLCRGSPSITH 299
Query: 239 DLLHSDLPDAI 249
DLL S+LPDAI
Sbjct: 300 DLLRSELPDAI 310
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| UNIPROTKB|G3V4V5 | 926 | HECTD1 "E3 ubiquitin-protein l | 0.949 | 0.262 | 0.676 | 4.1e-81 | |
| ZFIN|ZDB-GENE-030616-153 | 2576 | hectd1 "HECT domain containing | 0.949 | 0.094 | 0.676 | 4.1e-80 | |
| UNIPROTKB|F1SHF6 | 2607 | HECTD1 "Uncharacterized protei | 0.949 | 0.093 | 0.676 | 1.4e-79 | |
| UNIPROTKB|E1BLD1 | 2610 | HECTD1 "Uncharacterized protei | 0.957 | 0.093 | 0.673 | 1.8e-79 | |
| UNIPROTKB|Q9ULT8 | 2610 | HECTD1 "E3 ubiquitin-protein l | 0.949 | 0.093 | 0.676 | 1.8e-79 | |
| UNIPROTKB|E1C1E6 | 2576 | HECTD1 "Uncharacterized protei | 0.949 | 0.094 | 0.664 | 3.8e-79 | |
| UNIPROTKB|E1C040 | 2610 | HECTD1 "Uncharacterized protei | 0.949 | 0.093 | 0.664 | 3.8e-79 | |
| RGD|1561653 | 2610 | Hectd1 "HECT domain containing | 0.949 | 0.093 | 0.664 | 4.9e-79 | |
| MGI|MGI:2384768 | 2618 | Hectd1 "HECT domain containing | 0.949 | 0.092 | 0.664 | 4.9e-79 | |
| UNIPROTKB|E2RGH9 | 2609 | HECTD1 "Uncharacterized protei | 0.945 | 0.092 | 0.664 | 4e-77 |
| UNIPROTKB|G3V4V5 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 169/250 (67%), Positives = 199/250 (79%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G ST A T A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTVSGPSSACKPGR--STTGAPSTTA-DSKLSN-QVSTIVSLLSTLCRGSPVVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| ZFIN|ZDB-GENE-030616-153 hectd1 "HECT domain containing 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 4.1e-80, P = 4.1e-80
Identities = 169/250 (67%), Positives = 201/250 (80%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLCSKMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLSFIRDSGHLVHKDTLHSAMAVVSRLCSKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLETCVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P +T G S A+ S A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTASGPSSTCKPGRTSSGAAPS---AADSKLSN-QVSTIVSLLSTLCRGSPLVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD++
Sbjct: 297 LLRSELPDSM 306
|
|
| UNIPROTKB|F1SHF6 HECTD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 1.4e-79, P = 1.4e-79
Identities = 169/250 (67%), Positives = 199/250 (79%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G ST A T A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTVSGPSSACKPGR--STTGAPST-AADSKLSN-QVSTIVSLLSTLCRGSPVVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| UNIPROTKB|E1BLD1 HECTD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 1.8e-79, P = 1.8e-79
Identities = 167/248 (67%), Positives = 199/248 (80%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLL 241
+ A G+ +S + ST A T A ++K S+ VSTIVSLLS LCRGSP +T DLL
Sbjct: 241 AAAGGTISGPSSACKPSRSTTGAPST-AADSKLSN-QVSTIVSLLSTLCRGSPVVTHDLL 298
Query: 242 HSDLPDAI 249
S+LPD+I
Sbjct: 299 RSELPDSI 306
|
|
| UNIPROTKB|Q9ULT8 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 1.8e-79, P = 1.8e-79
Identities = 169/250 (67%), Positives = 199/250 (79%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G ST A T A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTVSGPSSACKPGR--STTGAPSTTA-DSKLSN-QVSTIVSLLSTLCRGSPVVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| UNIPROTKB|E1C1E6 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 3.8e-79, P = 3.8e-79
Identities = 166/250 (66%), Positives = 200/250 (80%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G T++ + + A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTASGPSSACKPGR---TSTGAPSTAADSKLSN-QVSTIVSLLSTLCRGSPVVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| UNIPROTKB|E1C040 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 3.8e-79, P = 3.8e-79
Identities = 166/250 (66%), Positives = 200/250 (80%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G T++ + + A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTASGPSSACKPGR---TSTGAPSTAADSKLSN-QVSTIVSLLSTLCRGSPVVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| RGD|1561653 Hectd1 "HECT domain containing E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 4.9e-79, P = 4.9e-79
Identities = 166/250 (66%), Positives = 200/250 (80%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G + + A ++ A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTVSGPSSACKPGRSTTGAPSA---AADSKLSN-QVSTIVSLLSTLCRGSPLVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| MGI|MGI:2384768 Hectd1 "HECT domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 4.9e-79, P = 4.9e-79
Identities = 166/250 (66%), Positives = 200/250 (80%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSAMAVVSRLC KMEPQ
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNCVLTFIRDSGHLVHKDTLHSAMAVVSRLCGKMEPQ 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSLEICVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 240
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G + + A ++ A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 241 AAAGGTVSGPSSACKPGRSTTGAPSA---AADSKLSN-QVSTIVSLLSTLCRGSPLVTHD 296
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 297 LLRSELPDSI 306
|
|
| UNIPROTKB|E2RGH9 HECTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 4.0e-77, P = 4.0e-77
Identities = 166/250 (66%), Positives = 197/250 (78%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
LD++AP+NVLEVTARA+TYYLDVSAECTRRIV +DGA+KA+C+RL + + +RTS+DLA
Sbjct: 62 LDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVV-VELNNRTSRDLA 120
Query: 62 EQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
EQC+KVLELICTRE+G+VFEAGGL VL FI+ GH VHKDTLHSA+ VSRLC MEP
Sbjct: 121 EQCVKVLELICTRESGAVFEAGGLNRVLTFIRDSGHLVHKDTLHSALTEVSRLCGTMEPL 180
Query: 122 DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRL 181
D L E VE+LS LL+HED +SD ALRCFASL+DRFTRRGVDPAPLA+HGL ELL R+
Sbjct: 181 DSSL-EIVESLSSLLKHEDHQVSDGALRCFASLADRFTRRGVDPAPLAKHGLTEELLSRM 239
Query: 182 SNAAG--SNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ A G S P + G STA A T A ++K S+ VSTIVSLLS LCRGSP +T D
Sbjct: 240 AAAGGTVSGPSSACKPGR--STAGAPST-AADSKLSN-QVSTIVSLLSTLCRGSPVVTHD 295
Query: 240 LLHSDLPDAI 249
LL S+LPD+I
Sbjct: 296 LLRSELPDSI 305
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ULT8 | HECD1_HUMAN | 6, ., 3, ., 2, ., - | 0.6706 | 0.9609 | 0.0942 | yes | N/A |
| Q69ZR2 | HECD1_MOUSE | 6, ., 3, ., 2, ., - | 0.6613 | 0.9531 | 0.0932 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
No hit with e-value below 0.005
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| KOG0168|consensus | 1051 | 100.0 | ||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166|consensus | 514 | 100.0 | ||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.79 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.75 | |
| KOG0166|consensus | 514 | 99.55 | ||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.39 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.2 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.14 | |
| KOG4224|consensus | 550 | 98.63 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.53 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.5 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.43 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.35 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.13 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.11 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.1 | |
| KOG4224|consensus | 550 | 98.04 | ||
| KOG1048|consensus | 717 | 97.91 | ||
| KOG4199|consensus | 461 | 97.68 | ||
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.14 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.11 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.07 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.94 | |
| KOG4500|consensus | 604 | 96.62 | ||
| PRK09687 | 280 | putative lyase; Provisional | 96.5 | |
| KOG1048|consensus | 717 | 96.48 | ||
| PRK09687 | 280 | putative lyase; Provisional | 96.43 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.4 | |
| KOG4199|consensus | 461 | 96.23 | ||
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.02 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.84 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 95.82 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 95.59 | |
| KOG2023|consensus | 885 | 95.45 | ||
| KOG2160|consensus | 342 | 95.21 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 95.02 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.79 | |
| KOG2160|consensus | 342 | 94.71 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 94.7 | |
| KOG0168|consensus | 1051 | 94.37 | ||
| KOG2171|consensus | 1075 | 94.09 | ||
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.81 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 93.68 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 93.54 | |
| KOG1241|consensus | 859 | 93.28 | ||
| KOG1293|consensus | 678 | 92.47 | ||
| PF05536 | 543 | Neurochondrin: Neurochondrin | 92.39 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 92.26 | |
| KOG2122|consensus | 2195 | 91.41 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 91.39 | |
| KOG2023|consensus | 885 | 89.16 | ||
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 88.98 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 88.97 | |
| KOG2274|consensus | 1005 | 88.75 | ||
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 88.74 | |
| KOG2171|consensus | 1075 | 88.11 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 87.86 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 87.36 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 87.3 | |
| KOG0946|consensus | 970 | 86.92 | ||
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 86.7 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 86.17 | |
| KOG2274|consensus | 1005 | 84.15 | ||
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 83.92 | |
| KOG1242|consensus | 569 | 83.85 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 83.73 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 82.87 | |
| KOG2122|consensus | 2195 | 82.75 | ||
| KOG1060|consensus | 968 | 82.06 | ||
| KOG1059|consensus | 877 | 81.09 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 81.08 | |
| KOG1062|consensus | 866 | 80.43 |
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=406.81 Aligned_cols=215 Identities=24% Similarity=0.366 Sum_probs=206.4
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEA 82 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~ 82 (256)
.|||+|+|+ .|||||||++|+.|++. .+||++||||+|++||. +|+ |+|||||+++|||+||++||.+||++
T Consensus 222 ~E~n~DIMl-~AcRaltyl~evlP~S~-a~vV~~~aIPvl~~kL~-~Ie-----yiDvAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 222 HEHNFDIML-LACRALTYLCEVLPRSS-AIVVDEHAIPVLLEKLL-TIE-----YIDVAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred ccccHHHHH-HHHHHHHHHHhhccchh-heeecccchHHHHHhhh-hhh-----hhHHHHHHHHHHHHHHhhccHHHHhc
Confidence 489999999 99999999999999999 56889999999999999 888 99999999999999999999999999
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
|++++||+|+|||++++|| +|+.|++|||.++++.+| +|.+++|.|+++|+|+|++++|.+|.||.|++|+|.+.
T Consensus 294 G~l~a~LsylDFFSi~aQR----~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 294 GALSAVLSYLDFFSIHAQR----VALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred ccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999 999999999999999888 99999999999999999999999999999999999999
Q ss_pred CCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHH
Q psy15268 162 GVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLL 241 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll 241 (256)
++++|.|+.+|++++.++||... |+.++..+++.+||||+.||++||...+.|+
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt--------------------------~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~ 423 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVT--------------------------PTILSNGTYTGVIRMLSLMSSGSPLLFRTLL 423 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcC--------------------------cccccccchhHHHHHHHHHccCChHHHHHHH
Confidence 99999999999999999999742 2568889999999999999999999999999
Q ss_pred hcChHHHHhhhhcc
Q psy15268 242 HSDLPDAIGCPRIY 255 (256)
Q Consensus 242 ~~~l~~~l~~~~~~ 255 (256)
+.+|.+++.++|.+
T Consensus 424 k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 424 KLDIADTLKRILQG 437 (1051)
T ss_pred HhhHHHHHHHHHhc
Confidence 99999999999864
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=335.63 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=185.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
|++++.+++..+|||||||||++|++.||+ |||+.||||.|+++|. ++..||.||++||||||+||.+ +
T Consensus 122 fm~~~q~~mlqfEAaWalTNiaSGtt~QTk-vVvd~~AVPlfiqlL~-------s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 122 FMDEIQRDMLQFEAAWALTNIASGTTQQTK-VVVDAGAVPLFIQLLS-------STEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred HHHhcchhHHHHHHHHHHhhhccCcccceE-EEEeCCchHHHHHHHc-------CchHHHHHHHHHHhccccCCchhHHH
Confidence 567777888878999999999999999996 5889999999999887 5579999999999999999955 6
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.||+.|++.++|..+. +...+.+.+|+++|++||+||+++|++ + .+.+++|+|..|+++.|++|+.|||||+|||+
T Consensus 194 ~vL~~galeplL~ll~--ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 194 YVLQCGALEPLLGLLL--SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHhcCchHHHHHHHH--hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 8999999999999997 334445667799999999999997766 4 89999999999999999999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
|| .+|+++++++.|.-+||+++|++.+ ....++.+|+.+++..|+..
T Consensus 272 Dg---~~E~i~avld~g~~~RLvElLs~~s------------------------------a~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 272 DG---PNEKIQAVLDVGIPGRLVELLSHES------------------------------AKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred cC---cHHHHHHHHhcCCcHHHHHHhcCcc------------------------------ccccCHHHHhhcCeeecCcc
Confidence 99 5799999999999999999998632 23456799999999999999
Q ss_pred HHHHHHhcChHHHHhhhh
Q psy15268 236 ITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 236 it~~Ll~~~l~~~l~~~~ 253 (256)
.|+.+++.+.-.+++-+|
T Consensus 319 QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 319 QTQVIINCGALKAFRSLL 336 (526)
T ss_pred ceehheecccHHHHHHHh
Confidence 999999999666665443
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=334.58 Aligned_cols=207 Identities=21% Similarity=0.248 Sum_probs=180.3
Q ss_pred CCCC-CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---
Q psy15268 1 MLDD-TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--- 76 (256)
Q Consensus 1 ~L~~-~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--- 76 (256)
||.. .+|..++ |||||||||++|++++|+. |+++||||.|+++|. +++.||.|||+||||||+||++
T Consensus 117 ~l~~~~~~~lq~-eAAWaLTnIAsgtse~T~~-vv~agavp~fi~Ll~-------s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 117 FLSRDDNPTLQF-EAAWALTNIASGTSEQTKV-VVDAGAVPIFIQLLS-------SPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred HHccCCChhHHH-HHHHHHHHHhcCchhhccc-cccCCchHHHHHHhc-------CCcHHHHHHHHHHHhccccCChHHH
Confidence 4553 4577777 9999999999999999975 789999999999776 5689999999999999999977
Q ss_pred chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
+.|+++|++.++|.++..... -.++|+++|++||+||+++|++ + .+++++|+|..+|+|.|++|+.|||||++||
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHhhcchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 589999999999999975432 2344599999999999996555 4 8999999999999999999999999999999
Q ss_pred hhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH
Q psy15268 155 SDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP 234 (256)
Q Consensus 155 ~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~ 234 (256)
+|+ .+|++|.+++.|++++|+++|.+..+ ++.++.+|++++++.|+.
T Consensus 265 sdg---~ne~iq~vi~~gvv~~LV~lL~~~~~------------------------------~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 265 TDG---SNEKIQMVIDAGVVPRLVDLLGHSSP------------------------------KVVTPALRAIGNIVTGSD 311 (514)
T ss_pred hcC---ChHHHHHHHHccchHHHHHHHcCCCc------------------------------ccccHHHhhccceeeccH
Confidence 999 68999999999999999999986432 444679999999999999
Q ss_pred HHHHHHHhcChHHHHhhh
Q psy15268 235 SITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 235 ~it~~Ll~~~l~~~l~~~ 252 (256)
.+|+.+++++.-..+..+
T Consensus 312 ~QTq~vi~~~~L~~l~~l 329 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNL 329 (514)
T ss_pred HHHHHHHhcChHHHHHHH
Confidence 999999999954444443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=187.19 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=157.6
Q ss_pred CCCCC-chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccC---CCCCCcHHHHHHHHHHHHHHhccccc
Q psy15268 2 LDDTA-PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAG---IASRTSKDLAEQCIKVLELICTREAG 77 (256)
Q Consensus 2 L~~~~-p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~---~~~~~~~DlaEQal~aLe~Is~d~~~ 77 (256)
|++++ ++.+. +|+|||+||+.+++++++. +++.|+||.|++.+. ... |.+-...++.|||+|+|+||||+.+.
T Consensus 240 L~sg~~~~VRE-~AA~AL~nLAs~s~e~r~~-Iv~aGgIp~LI~lL~-sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ 316 (2102)
T PLN03200 240 LGQGNEVSVRA-EAAGALEALSSQSKEAKQA-IADAGGIPALINATV-APSKEFMQGEFAQALQENAMGALANICGGMSA 316 (2102)
T ss_pred HccCCChHHHH-HHHHHHHHHhcCCHHHHHH-HHHCCCHHHHHHHHh-CcchhhhccccchHHHHHHHHHHHHHhCCchh
Confidence 44444 45555 9999999999999999976 679999999999775 211 00112356899999999999997432
Q ss_pred --------------h---hhhcCcHHHHHHhhcccCcccchhhh--hHHHHHHHHhcCCCCCCC-C-ChHHHH------H
Q psy15268 78 --------------S---VFEAGGLASVLLFIKQHGHSVHKDTL--HSAMAVVSRLCSKMEPQD-P-QLPEAV------E 130 (256)
Q Consensus 78 --------------~---Vl~~G~l~alL~~ldff~~~~qr~~l--~~a~~~vsNlCr~~~~~~-~-~v~~~l------P 130 (256)
. ....|++.+++..+|......+ .+ +++.|+++|+||+++|+. . .+.+++ |
T Consensus 317 ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~--~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~ 394 (2102)
T PLN03200 317 LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTR--AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394 (2102)
T ss_pred hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhh--hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh
Confidence 1 2455888888888885322222 11 378999999999986655 2 567776 5
Q ss_pred HHHHhhcC-------------CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCC
Q psy15268 131 ALSLLLRH-------------EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGA 197 (256)
Q Consensus 131 ~L~~lL~~-------------~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~ 197 (256)
.+..+|+| .|.++.+++|||+.|++++ +++..+.+++.|.++.|+++|.+.
T Consensus 395 ~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~------------- 458 (2102)
T PLN03200 395 YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS------------- 458 (2102)
T ss_pred HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC-------------
Confidence 55555555 5599999999999999998 568899999999999999999742
Q ss_pred CccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC-hHH
Q psy15268 198 NVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD-LPD 247 (256)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~ 247 (256)
+.......++.|++++.++++....+++.+ ||-
T Consensus 459 -----------------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 459 -----------------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred -----------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 124556788999999999999999999998 553
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=177.82 Aligned_cols=228 Identities=14% Similarity=0.144 Sum_probs=164.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+|+.|. +|+|+|++++...++.+.. |++.|+||.|++.|. . -++.++.|+|.|+|++|+++++ +.
T Consensus 198 LsS~d~~lQ~-eAa~aLa~Lass~ee~~~a-VIeaGaVP~LV~LL~-s-----g~~~~VRE~AA~AL~nLAs~s~e~r~~ 269 (2102)
T PLN03200 198 LSSGNSDAQA-NAASLLARLMMAFESSISK-VLDAGAVKQLLKLLG-Q-----GNEVSVRAEAAGALEALSSQSKEAKQA 269 (2102)
T ss_pred HcCCCHHHHH-HHHHHHHHHHcCChHHHHH-HHHCCCHHHHHHHHc-c-----CCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5667888888 9999999999999988866 679999999999886 2 2356899999999999999744 58
Q ss_pred hhhcCcHHHHHHhhccc---------CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCC-CHHHHHHHH
Q psy15268 79 VFEAGGLASVLLFIKQH---------GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHE-DTHISDAAL 148 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff---------~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~-D~~vv~~ac 148 (256)
|+++||+++++.++.-. +...|+ +|+|+++|+|+++ .+++|.|.+++++. |..++.++|
T Consensus 270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe----~AvwALsNIcgg~-------~~ll~~L~~ll~s~rd~~~~ada~ 338 (2102)
T PLN03200 270 IADAGGIPALINATVAPSKEFMQGEFAQALQE----NAMGALANICGGM-------SALILYLGELSESPRSPAPIADTL 338 (2102)
T ss_pred HHHCCCHHHHHHHHhCcchhhhccccchHHHH----HHHHHHHHHhCCc-------hhhHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999732 233466 9999999999997 67999999999876 999999999
Q ss_pred HHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCC-c-C---CCCCCCcccc----ccCCcc---ccccccC
Q psy15268 149 RCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPL-N-T---SLGGANVSTA----SASGTL---ATEAKAS 215 (256)
Q Consensus 149 ~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~-~-~---~~~~~~~~~~----~~~~~~---~~~~~~s 215 (256)
|+++|+..-+..+.++++ +++. .+++.|++|+.+......- . . .+-..|.-.. ..++.. .-=...+
T Consensus 339 gALayll~l~d~~~~~~~-~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~ 417 (2102)
T PLN03200 339 GALAYALMVFDSSAESTR-AFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT 417 (2102)
T ss_pred hhHHHHHHhcCCchhhhh-hccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC
Confidence 999999555544566677 5554 5779999999754211000 0 0 0000000000 000000 0000122
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhcC-hHHHH
Q psy15268 216 SGSVSTIVSLLSALCRGSPSITSDLLHSD-LPDAI 249 (256)
Q Consensus 216 ~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~~l 249 (256)
..........|..||.+..+.-+.+.+.+ +|.-+
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 45677888899999999999999999888 54443
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-15 Score=145.23 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=136.5
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchh
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSV 79 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~V 79 (256)
...+++..- .|||||.|+.|+.+|.++. |++.|.+|.|+++|. .. ..-+.==|+.++|||..- ....|
T Consensus 247 ~~~D~~Vl~-Da~WAlsyLsdg~ne~iq~-vi~~gvv~~LV~lL~-~~------~~~v~~PaLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 247 HSTDEEVLT-DACWALSYLTDGSNEKIQM-VIDAGVVPRLVDLLG-HS------SPKVVTPALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred hcCCHHHHH-HHHHHHHHHhcCChHHHHH-HHHccchHHHHHHHc-CC------CcccccHHHhhccceeeccHHHHHHH
Confidence 345656665 9999999999999999976 779999999999887 32 223444599999999653 44689
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.+|+++.+..++.-...+.+| +.|.|++||.+.|-...- . .....+|.|.++|+..|-++..-|+||++.++.+
T Consensus 318 i~~~~L~~l~~ll~~s~~~~ik---kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 318 INSGALPVLSNLLSSSPKESIK---KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhcChHHHHHHHhccCcchhHH---HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999988644444455 259999999999854332 2 5568899999999999999999999999999988
Q ss_pred ccCCCCCccchhccccHHHHHHHhc
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.. ++++..|++.|+++.+..||.
T Consensus 395 g~--~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 395 GT--PEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred CC--HHHHHHHHHcCCchhhhhccc
Confidence 74 799999999999999999994
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-13 Score=127.43 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=139.8
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc---cccchhhh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT---REAGSVFE 81 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~---d~~~~Vl~ 81 (256)
.+||.+. -||||+.|+.||..|+... |.+.|.-+.|+++|. .+ +..+---++...|||-. ++...+++
T Consensus 255 ~D~evlv-DA~WAiSYlsDg~~E~i~a-vld~g~~~RLvElLs--~~-----sa~iqtPalR~vGNIVTG~D~QTqviI~ 325 (526)
T COG5064 255 RDPEVLV-DACWAISYLSDGPNEKIQA-VLDVGIPGRLVELLS--HE-----SAKIQTPALRSVGNIVTGSDDQTQVIIN 325 (526)
T ss_pred cCHHHHH-HHHHHHHHhccCcHHHHHH-HHhcCCcHHHHHHhc--Cc-----cccccCHHHHhhcCeeecCccceehhee
Confidence 4678888 9999999999999999976 779999999999886 33 55566678999999954 34568999
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
.|.|.++..++....-..-+ .|-|++||.--+....-. .=.+.+|.|..+|.+-|-++...||||++..+.|..
T Consensus 326 ~G~L~a~~~lLs~~ke~irK----EaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 326 CGALKAFRSLLSSPKENIRK----EACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred cccHHHHHHHhcChhhhhhh----hhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999998655444555 899999999877543322 235678999999999999999999999999999988
Q ss_pred CCCCCccchhccccHHHHHHHhcc
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+.|+.|..|++.|+++.|..+|..
T Consensus 402 ~~PD~iryLv~qG~IkpLc~~L~~ 425 (526)
T COG5064 402 NRPDIIRYLVSQGFIKPLCDLLDV 425 (526)
T ss_pred CCchHHHHHHHccchhHHHHHHhc
Confidence 889999999999999999999964
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=91.37 Aligned_cols=113 Identities=24% Similarity=0.335 Sum_probs=94.7
Q ss_pred HHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcCcHHHHHHhhcccCcccchhhhhHHHH
Q psy15268 33 VAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMA 109 (256)
Q Consensus 33 vv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~ 109 (256)
++..|.||.|++.|. .+..++.+.++|+|++++.+.+ ..+++.|+++.++.+++.....+++ .|+|
T Consensus 3 ~~~~~~i~~l~~~l~-------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~----~a~~ 71 (120)
T cd00020 3 VIQAGGLPALVSLLS-------SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK----AALW 71 (120)
T ss_pred HHHcCChHHHHHHHH-------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHH----HHHH
Confidence 358999999999887 2257999999999999998643 5688889999999999876667777 9999
Q ss_pred HHHHhcCCCCCCCC-Ch-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 110 VVSRLCSKMEPQDP-QL-PEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 110 ~vsNlCr~~~~~~~-~v-~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
++.|+|.+.++... .+ ..++|.|.++++..|.++.+.++|+|..|++
T Consensus 72 ~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 72 ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 99999998643333 33 3489999999999999999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=87.82 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=87.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|++.+++... .|+|||.|+.+..|+.... .++.|++|.|++.|. .+..+++++++|+|++|+...+ ..
T Consensus 16 l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 16 LSSSDENVQR-EAAWALSNLSAGNNDNIQA-VVEAGGLPALVQLLK-------SEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred HHcCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHHCCChHHHHHHHh-------CCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4566677776 9999999999999999876 458899999999876 2368999999999999999875 34
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
+.+.|.+..++.+++.+...+++ .|.|++.|+|.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~----~a~~~l~~l~~ 120 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQK----NATGALSNLAS 120 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHH----HHHHHHHHhhC
Confidence 67899999999999988766777 99999999983
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=8e-07 Score=84.49 Aligned_cols=195 Identities=18% Similarity=0.180 Sum_probs=140.1
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc--cchhhhcC--cHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE--AGSVFEAG--GLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~--~~~Vl~~G--~l~al 88 (256)
.|.-+|.||-- ++..+++.|+.|++|.|++.|. +++-|+.+-|-.+++||+-|. ++...++| .++++
T Consensus 186 natgaLlnmTh--s~EnRr~LV~aG~lpvLVsll~-------s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 186 NATGALLNMTH--SRENRRVLVHAGGLPVLVSLLK-------SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred HHHHHHHHhhh--hhhhhhhhhccCCchhhhhhhc-------cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 66677777754 4555667889999999999776 558999999999999999874 45677788 89999
Q ss_pred HHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccc
Q psy15268 89 LLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAP 167 (256)
Q Consensus 89 L~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~ 167 (256)
.+++|..+..++- .|.-.+.|+-..-...-+ .-...+|.+.++|++.--..+-....|+-.|+-. +-.--.
T Consensus 257 v~Lmd~~s~kvkc----qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih----plNe~l 328 (550)
T KOG4224|consen 257 VDLMDDGSDKVKC----QAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH----PLNEVL 328 (550)
T ss_pred HHHHhCCChHHHH----HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc----cCcccc
Confidence 9999988777766 555555555433222222 2245689999999877544444445677666532 223346
Q ss_pred hhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC-hH
Q psy15268 168 LAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD-LP 246 (256)
Q Consensus 168 l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~ 246 (256)
+++.|+++.||++|.- +. +-...-+..+.|..|+..|..-...+.+++ ||
T Consensus 329 I~dagfl~pLVrlL~~-~d----------------------------nEeiqchAvstLrnLAasse~n~~~i~esgAi~ 379 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRA-GD----------------------------NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIP 379 (550)
T ss_pred eecccchhHHHHHHhc-CC----------------------------chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchH
Confidence 7899999999999962 21 112344678889999988888888888888 88
Q ss_pred HHHhhhh
Q psy15268 247 DAIGCPR 253 (256)
Q Consensus 247 ~~l~~~~ 253 (256)
.-++-++
T Consensus 380 kl~eL~l 386 (550)
T KOG4224|consen 380 KLIELLL 386 (550)
T ss_pred HHHHHHh
Confidence 8776544
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-06 Score=84.80 Aligned_cols=196 Identities=16% Similarity=0.207 Sum_probs=147.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--hh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG--SV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~--~V 79 (256)
|...+|.... .++|.|-++......... .+++++.+|.++..|. .+..++++.|+.+|.+|+...+. .+
T Consensus 86 L~h~~~~Vr~-l~l~~l~~~~~~~~~~~~-~~~~~~l~~~i~~~L~-------~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 86 LTHPSPKVRR-LALKQLGRIARHSEGAAQ-LLVDNELLPLIIQCLR-------DPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred hcCCCHHHHH-HHHHHHHHHhcCCHHHHH-HhcCccHHHHHHHHHc-------CCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 4455666666 999999999988877774 4779999999999776 34799999999999999987553 48
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHH--HHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPE--AVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~--~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+..+.+..+-..+...+..+.. .+.++++++|+.-+..-..+.+ +++.+-+.|..+|.-+.-+++-.++.++..
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~----Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRC----RVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 8888888888887653333444 5888999998764222235554 999999989999999999999999999983
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
++-.+.+.+.|++++|.++|..... . +..+.-.+...++..+.+++.+|...
T Consensus 233 ----~~g~~yL~~~gi~~~L~~~l~~~~~-d-----------------------p~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 233 ----PHGLQYLEQQGIFDKLSNLLQDSEE-D-----------------------PRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred ----hhHHHHHHhCCHHHHHHHHHhcccc-C-----------------------CcccchhhhhHHHHHHHHHhcChHHH
Confidence 4568999999999999999975321 0 11222344466788888888665544
Q ss_pred H
Q psy15268 238 S 238 (256)
Q Consensus 238 ~ 238 (256)
.
T Consensus 285 ~ 285 (503)
T PF10508_consen 285 L 285 (503)
T ss_pred H
Confidence 3
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-06 Score=76.66 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=122.0
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-hhhhcC
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-SVFEAG 83 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~Vl~~G 83 (256)
++|..+- .|..++.|. .+.| .++.++.+.|+++.+.+.|. .++..+.|+|+|||.|+|..... ..++.
T Consensus 25 ~dp~i~e-~al~al~n~-aaf~-~nq~~Ir~~Ggi~lI~~lL~-------~p~~~vr~~AL~aL~Nls~~~en~~~Ik~- 93 (254)
T PF04826_consen 25 EDPFIQE-KALIALGNS-AAFP-FNQDIIRDLGGISLIGSLLN-------DPNPSVREKALNALNNLSVNDENQEQIKM- 93 (254)
T ss_pred CChHHHH-HHHHHHHhh-ccCh-hHHHHHHHcCCHHHHHHHcC-------CCChHHHHHHHHHHHhcCCChhhHHHHHH-
Confidence 4555665 889999996 4555 44566779999999998776 45889999999999999988553 23333
Q ss_pred cHHHHHHhhccc--CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 84 GLASVLLFIKQH--GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 84 ~l~alL~~ldff--~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
-+..++.-+-.. ...+|. .++..+.|++..- .....+...+|.|..+|...+.++...+.+++.+|+..
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~----agLrlL~nLtv~~-~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n---- 164 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQL----AGLRLLTNLTVTN-DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN---- 164 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHH----HHHHHHHccCCCc-chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC----
Confidence 244444433222 457788 8888999997431 11247888999999999999999999999999999986
Q ss_pred CCCccchhccccHHHHHHHhcc
Q psy15268 162 GVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
++....++.++.+..++.|+..
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred HHHHHHHHhccchhHHHHHHcc
Confidence 5678899999999999999964
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.3e-06 Score=82.53 Aligned_cols=203 Identities=16% Similarity=0.170 Sum_probs=157.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---h
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---S 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~ 78 (256)
|...++|.+- .+|++|..+++..+-.. . ..+..+.|..-|. .++..|.+.++++|+++++.... .
T Consensus 47 L~~~~~e~v~-~~~~iL~~~l~~~~~~~---l-~~~~~~~L~~gL~-------h~~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 47 LNTSNREQVE-LICDILKRLLSALSPDS---L-LPQYQPFLQRGLT-------HPSPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HhhcChHHHH-HHHHHHHHHHhccCHHH---H-HHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4445667776 99999999999664333 1 5567777777665 34789999999999999876543 4
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.+.+.+..++..+......+.+ .|.-++.++++..+.-+. .-.+.++.|.+++...|..+.-.++.++.+++..
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~----~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAK----AAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHH----HHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 77889999999999877788888 999999999976422211 1233489999999887888888899999888765
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+++..+.+.++|+++.+++.|.. .. . =....++.+|+.||. ++.-.
T Consensus 191 ---S~~~~~~~~~sgll~~ll~eL~~-dD--------------------------i---Lvqlnalell~~La~-~~~g~ 236 (503)
T PF10508_consen 191 ---SPEAAEAVVNSGLLDLLLKELDS-DD--------------------------I---LVQLNALELLSELAE-TPHGL 236 (503)
T ss_pred ---CHHHHHHHHhccHHHHHHHHhcC-cc--------------------------H---HHHHHHHHHHHHHHc-ChhHH
Confidence 67889999999999999999964 21 1 134478999999999 88888
Q ss_pred HHHHhcChHHHHhhhhc
Q psy15268 238 SDLLHSDLPDAIGCPRI 254 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~~~ 254 (256)
+-|.+.++.+.|...+.
T Consensus 237 ~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 99999998888877664
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-06 Score=84.29 Aligned_cols=162 Identities=12% Similarity=0.193 Sum_probs=124.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--ch
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GS 78 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~ 78 (256)
+|+.+|++... .+.++|.++ +...+.... +...|+||.|++.|. +...|+.+.++++|-|+|-|.. ..
T Consensus 298 ~Ldr~n~elli-l~v~fLkkL-Si~~ENK~~-m~~~giV~kL~kLl~-------s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 298 CLDRENEELLI-LAVTFLKKL-SIFKENKDE-MAESGIVEKLLKLLP-------SENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred HHcCCCHHHHH-HHHHHHHHH-cCCHHHHHH-HHHcCCHHHHHHHhc-------CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 36778888777 888888775 567777755 569999999998665 4478999999999999999844 58
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLL-LRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~l-L~~~D~~vv~~ac~als~L~d 156 (256)
+++.|.++.+..++.. ...+. .++.++.|+|..-.... +.-.+++|.|.++ +.+.++++--.+.+.+..++-
T Consensus 368 mV~~GlIPkLv~LL~d--~~~~~----val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKD--PNFRE----VALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHCCCcHHHHHHhCC--CchHH----HHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 9999999999999973 23333 78999999998654333 4566899999887 556677776666777777774
Q ss_pred hccCCCCCccchhccccHHHHHHHhc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
. +...|.+++.|.++.|+++.-
T Consensus 442 ~----~rnaqlm~~g~gL~~L~~ra~ 463 (708)
T PF05804_consen 442 N----KRNAQLMCEGNGLQSLMKRAL 463 (708)
T ss_pred C----HHHHHHHHhcCcHHHHHHHHH
Confidence 4 345678888778899888864
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.6e-05 Score=70.00 Aligned_cols=169 Identities=16% Similarity=0.211 Sum_probs=127.5
Q ss_pred HhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHH
Q psy15268 34 AIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVV 111 (256)
Q Consensus 34 v~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~v 111 (256)
.+.+.+..|...|. .. .+..+.|+++.+|+|.++-.. +.+-+.||+..+..+++.....++. +|+|++
T Consensus 9 l~~~~l~~Ll~lL~-~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~----~AL~aL 78 (254)
T PF04826_consen 9 LEAQELQKLLCLLE-ST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVRE----KALNAL 78 (254)
T ss_pred cCHHHHHHHHHHHh-cC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHH----HHHHHH
Confidence 46677888888787 43 377899999999999877533 4677889999999999998788887 999999
Q ss_pred HHhcCCCCCCC-CChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCC
Q psy15268 112 SRLCSKMEPQD-PQLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSN 188 (256)
Q Consensus 112 sNlCr~~~~~~-~~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~ 188 (256)
.|+..+. +. ..++..++.++..+.+ -|..+-..+..++..++-- ++.+.++ .+.++.+++||.. |
T Consensus 79 ~Nls~~~--en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-----~~~~~~l-~~~i~~ll~LL~~--G-- 146 (254)
T PF04826_consen 79 NNLSVND--ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-----NDYHHML-ANYIPDLLSLLSS--G-- 146 (254)
T ss_pred HhcCCCh--hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-----cchhhhH-HhhHHHHHHHHHc--C--
Confidence 9997553 23 2788888888886443 3788888999999998732 2234444 3578999999963 2
Q ss_pred CCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhh
Q psy15268 189 PLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGC 251 (256)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~ 251 (256)
+..+-..++++|.+|+. +|..+++|+....+..+-.
T Consensus 147 --------------------------~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~ 182 (254)
T PF04826_consen 147 --------------------------SEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLS 182 (254)
T ss_pred --------------------------ChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHH
Confidence 11344589999999975 6888999998875544433
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.9e-05 Score=78.01 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhcCcH
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEAGGL 85 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~G~l 85 (256)
+..+..+...|.|+++-..-.. -.++.|.|+.|++.|. +...++.--+++.|+|+|-. +.+.+.+.|++
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~--kM~~~~iV~~Lv~~Ld-------r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVEL--KMVNKGIVSLLVKCLD-------RENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHH--HHHhcCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 3445588889999999654433 3569999999998776 44789999999999999865 45678999999
Q ss_pred HHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCC
Q psy15268 86 ASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVD 164 (256)
Q Consensus 86 ~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v-~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~ 164 (256)
+++..+++--.. +.++.+++++-|+.-...--...| ..++|.|..+|..+ +....++..+..|+.. ++.
T Consensus 334 ~kL~kLl~s~~~----~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d----d~~ 403 (708)
T PF05804_consen 334 EKLLKLLPSENE----DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD----DEA 403 (708)
T ss_pred HHHHHHhcCCCH----HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC----Hhh
Confidence 999999975433 344499999999986532212222 34789999999754 3445566666666653 222
Q ss_pred ccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 165 PAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 165 i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
-..+...+.++.++++|...++. ..-..++.++.+|+...... +.+.+.+
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~-----------------------------~v~~eliaL~iNLa~~~rna-qlm~~g~ 453 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEE-----------------------------EVQLELIALLINLALNKRNA-QLMCEGN 453 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCc-----------------------------cccHHHHHHHHHHhcCHHHH-HHHHhcC
Confidence 33556679999999998643221 11124667777776655444 5555544
Q ss_pred -hHHHHhhhh
Q psy15268 245 -LPDAIGCPR 253 (256)
Q Consensus 245 -l~~~l~~~~ 253 (256)
++.-+++++
T Consensus 454 gL~~L~~ra~ 463 (708)
T PF05804_consen 454 GLQSLMKRAL 463 (708)
T ss_pred cHHHHHHHHH
Confidence 666665554
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=53.99 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=34.3
Q ss_pred CchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 25 SAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 25 ~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
+|++.+. +++.|+||.|+++|. ..+.++.|+|+|||+||++
T Consensus 1 ~~~~~~~-i~~~g~i~~Lv~ll~-------~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQA-IVEAGGIPPLVQLLK-------SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHH-HHHTTHHHHHHHHTT-------SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHH-HHHcccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhC
Confidence 3566655 679999999999776 4489999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.9e-05 Score=71.19 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=117.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCC--cHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--c
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDG--AMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--G 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~g--AVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~ 77 (256)
|+..|+|.|. -++.++.||.- -+-.+.+.++.| .||.|+++.. .++..+.=||--||+||+.|.. .
T Consensus 217 l~s~d~dvqy-ycttaisnIaV--d~~~Rk~Laqaep~lv~~Lv~Lmd-------~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 217 LKSGDLDVQY-YCTTAISNIAV--DRRARKILAQAEPKLVPALVDLMD-------DGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred hccCChhHHH-HHHHHhhhhhh--hHHHHHHHHhcccchHHHHHHHHh-------CCChHHHHHHHHHHhhhcccchhhh
Confidence 4678899999 99999999974 344455677888 8999999554 3466788899999999999844 5
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC--CCC-Ch--HHHHHHHHHhhcCCCHH-HHHHHHHHH
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP--QDP-QL--PEAVEALSLLLRHEDTH-ISDAALRCF 151 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~--~~~-~v--~~~lP~L~~lL~~~D~~-vv~~ac~al 151 (256)
.|.++|+++.++.++... +-. -.+.-| -|-|+..- -+. .+ ...+-.|..+|...|.+ +--.|.-.+
T Consensus 287 eiv~ag~lP~lv~Llqs~---~~p----lilasV-aCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSP---MGP----LILASV-ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred HHHhcCCchHHHHHHhCc---chh----HHHHHH-HHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 799999999999999432 223 111122 23455433 233 33 33577788999998866 777777777
Q ss_pred HHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 152 ASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 152 s~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
-.|+.+.+ .....++++|.++.+.+|+..
T Consensus 359 rnLAasse---~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 359 RNLAASSE---HNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHHhhhhh---hhhHHHhhcCchHHHHHHHhc
Confidence 77877654 356788999999999999963
|
|
| >KOG1048|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=74.62 Aligned_cols=207 Identities=17% Similarity=0.243 Sum_probs=155.8
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----------
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---------- 77 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---------- 77 (256)
..+|..++.||-|+.+...+.-+..-..+|-|-.|+..+.-.++-++.. .--.|+|+..|-|+|=+-..
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d-~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLD-SKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcccc-chhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 3455599999999999998888777778999999987665344433333 34689999999998643110
Q ss_pred ----------------------------------------------hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHH
Q psy15268 78 ----------------------------------------------SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVV 111 (256)
Q Consensus 78 ----------------------------------------------~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~v 111 (256)
...+.-++...|.|+. ...-..|+..+.=++
T Consensus 467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~---~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA---LSKNDNTLEASAGAL 543 (717)
T ss_pred hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH---HhcchHHHHHhhhhH
Confidence 0222234555566664 233345666888888
Q ss_pred HHhcCCCCCCCCC-------hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhccc
Q psy15268 112 SRLCSKMEPQDPQ-------LPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNA 184 (256)
Q Consensus 112 sNlCr~~~~~~~~-------v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~ 184 (256)
=|++-+..+...+ .+..+|.|..+|+.+|+.|+.+++-++..++-. -+.+.++..+.++.|++.|...
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d-----~rnk~ligk~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD-----IRNKELIGKYAIPDLVRCLPGS 618 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC-----chhhhhhhcchHHHHHHhCcCC
Confidence 9999887665432 355679999999999999999999999999854 4688899899999999999532
Q ss_pred CCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC-hHH
Q psy15268 185 AGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD-LPD 247 (256)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~ 247 (256)
++. +..+-.++..+...|-.+.+.++.-+++|++.. ++.
T Consensus 619 ~~~------------------------~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 619 GPS------------------------TSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPK 658 (717)
T ss_pred CCC------------------------cCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHH
Confidence 220 346778999999999999999999999999988 544
|
|
| >KOG4199|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00071 Score=64.21 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHHhc---------cCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--cc
Q psy15268 8 ENVLEVTARAMTYYLD---------VSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EA 76 (256)
Q Consensus 8 ~~~l~~AaraLTni~~---------~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~ 76 (256)
+.+- +++|++-.++- ---+..+.| +..|...+|.+.|. .-- ..|+---..-+|+-|+-+ ..
T Consensus 205 ~~VR-el~~a~r~l~~dDDiRV~fg~ah~hAr~i-a~e~~l~~L~Eal~-A~~-----dp~~L~~l~~tl~~lAVr~E~C 276 (461)
T KOG4199|consen 205 RTVR-ELYDAIRALLTDDDIRVVFGQAHGHARTI-AKEGILTALTEALQ-AGI-----DPDSLVSLSTTLKALAVRDEIC 276 (461)
T ss_pred HHHH-HHHHHHHHhcCCCceeeecchhhHHHHHH-HHhhhHHHHHHHHH-ccC-----CccHHHHHHHHHHHHHHHHHHH
Confidence 5566 89999887752 112234444 46778889999887 422 233333445678888765 44
Q ss_pred chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHh-hcC-CCHHHHHHHHHHHHH
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLL-LRH-EDTHISDAALRCFAS 153 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~l-L~~-~D~~vv~~ac~als~ 153 (256)
..|-+.||+..++..+|..+.+--|..-+.++.+++-+-.+-+..+- .-+..+|.+..+ ++| +||.|++.+|.|++.
T Consensus 277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI 356 (461)
T ss_pred HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 78999999999999999877666676667788888777766544443 345677888777 454 689999999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS 233 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S 233 (256)
|+=+ +||+-...++.|.-.-.+|-+..++- -......--.++.+++..|
T Consensus 357 l~LR---~pdhsa~~ie~G~a~~avqAmkahP~----------------------------~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 357 LCLR---SPDHSAKAIEAGAADLAVQAMKAHPV----------------------------AAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHhc---CcchHHHHHhcchHHHHHHHHHhCcH----------------------------HHHHHHHHHHHHHHHHHhh
Confidence 9977 78899999999999999999865421 1234445567788889999
Q ss_pred HHHHHHHHhcChHHHHhhh
Q psy15268 234 PSITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 234 ~~it~~Ll~~~l~~~l~~~ 252 (256)
.+-...++..++-+-|..+
T Consensus 406 ~~~~~~~l~~GiE~Li~~A 424 (461)
T KOG4199|consen 406 AENRTILLANGIEKLIRTA 424 (461)
T ss_pred hhccchHHhccHHHHHHHH
Confidence 9999999888877766654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00018 Score=49.47 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 106 SAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
.|.|.+.+++...+... +++.+++|.|..+|..++++|...|||||..|
T Consensus 6 ~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 89999999887754444 48999999999999999999999999999764
|
... |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00023 Score=46.46 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=33.3
Q ss_pred ccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 75 EAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 75 ~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
+...|+++|+++++++++......+|+ .|.|++.|+|+
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~----~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQE----EAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHH----HHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHH----HHHHHHHHHhC
Confidence 446799999999999999966677787 99999999986
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00065 Score=46.67 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Q psy15268 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELI 71 (256)
Q Consensus 9 ~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~I 71 (256)
... .|+|+|-++++..++..+. .....+|.|+..|. . +..+|.+.|.|+||+|
T Consensus 3 vR~-~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~-d------~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRR-AAAWALGRLAEGCPELLQP--YLPELLPALIPLLQ-D------DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHH-HHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTT-S------SSHHHHHHHHHHHHCH
T ss_pred HHH-HHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHc-C------CCHHHHHHHHHHHhcC
Confidence 344 8999999999999999865 46789999998886 2 2459999999999986
|
... |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0023 Score=40.56 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 32 IVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 32 ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
.+++.|++|.|++.|. ..+.++.++++|+|.||+.
T Consensus 7 ~i~~~g~i~~L~~ll~-------~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLK-------SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHcC
Confidence 3669999999999765 3378999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG4500|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0083 Score=58.69 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=80.5
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHH---HHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchh
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRI---VAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSV 79 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~i---vv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~V 79 (256)
+.+.+..+++.|+..+. .++-+-..+ -++.|++..|.+ .+ ++++.+|-|||-.+|||||-| .++++
T Consensus 54 ~~~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq-----~p--sS~d~ev~~Q~~RaLgNiCydn~E~R~a~ 125 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQ-----TP--SSPDTEVHEQCFRALGNICYDNNENRAAF 125 (604)
T ss_pred ccchhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHh-----CC--CCCcccHHHHHHHHHhhhhccCchhHHHH
Confidence 45666668888888877 222222122 234455555544 33 466899999999999999987 44689
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
++.||-.-++..++ -.|..-.|... ++.-..-.|.+- +-|+
T Consensus 126 ~~lgGaqivid~L~-------------------~~cs~d~~ane~~~~v~~g~l~Ny------------------~l~~- 167 (604)
T KOG4500|consen 126 FNLGGAQIVIDVLK-------------------PYCSKDNPANEEYSAVAFGVLHNY------------------ILDS- 167 (604)
T ss_pred HhcCCceehHhhhc-------------------cccccCCccHHHHHHHHHHHHHHh------------------hCCc-
Confidence 99999776666554 35655555443 444444444432 2222
Q ss_pred cCCCCCccchhccccHHHHHHHhcc
Q psy15268 159 TRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 159 ~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.+.-..+++.|+++.|+.++.-
T Consensus 168 ---~~l~aq~~~~gVl~tL~~~~~I 189 (604)
T KOG4500|consen 168 ---RELRAQVADAGVLNTLAITYWI 189 (604)
T ss_pred ---HHHHHHHHhcccHHHHHHHhhc
Confidence 1233457788888888888864
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.031 Score=51.36 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=37.3
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR 74 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d 74 (256)
.+.+|..-. .|+|+|..+-+--..+. .+. |.|...+. . -+..+|..+++.+||++...
T Consensus 64 ~~~d~~vR~-~A~~aLg~lg~~~~~~~-~a~------~~L~~l~~-~-----D~d~~VR~~A~~aLG~~~~~ 121 (280)
T PRK09687 64 SSKNPIERD-IGADILSQLGMAKRCQD-NVF------NILNNLAL-E-----DKSACVRASAINATGHRCKK 121 (280)
T ss_pred hCCCHHHHH-HHHHHHHhcCCCccchH-HHH------HHHHHHHh-c-----CCCHHHHHHHHHHHhccccc
Confidence 455777777 89999999865221123 222 67776544 2 33678888888888888544
|
|
| >KOG1048|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0075 Score=61.90 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=117.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA----- 76 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~----- 76 (256)
|+..+|..|- .||-=|-.+.=+..+--.. |-.-|.||.||.+|. ....+|--|+.|||+|+.=...
T Consensus 242 L~~q~~~~qs-naaaylQHlcfgd~~ik~~-vrqlggI~kLv~Ll~-------~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 242 LMSQDPSVQS-NAAAYLQHLCFGDNKIKSR-VRQLGGIPKLVALLD-------HRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred HhccChhhhH-HHHHHHHHHHhhhHHHHHH-HHHhccHHHHHHHhc-------CCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4445666666 7776676777666655555 568999999999886 4478999999999999965422
Q ss_pred chhhhcCcHHHHHHhhcccC-cccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh--cCC------------CH
Q psy15268 77 GSVFEAGGLASVLLFIKQHG-HSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL--RHE------------DT 141 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~-~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL--~~~------------D~ 141 (256)
-+|-+.||+..++..++.-. -.+.. +++-++-|+-.+-.-.+..+.+++++|.+.+ -|. |+
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e----~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRE----LITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHH----HHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccc
Confidence 27999999999999997432 23333 4555555776552122237999999998763 233 68
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhc-cccHHHHHHHhcc
Q psy15268 142 HISDAALRCFASLSDRFTRRGVDPAPLAQ-HGLASELLIRLSN 183 (256)
Q Consensus 142 ~vv~~ac~als~L~d~~~~~~~~i~~l~~-~glv~~Lv~LL~~ 183 (256)
.|.-++--||-.++... .|.-+.+-+ .|+|..|+..+.+
T Consensus 389 ~vf~n~tgcLRNlSs~~---~eaR~~mr~c~GLIdaL~~~iq~ 428 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAG---QEAREQMRECDGLIDALLFSIQT 428 (717)
T ss_pred eeeehhhhhhccccchh---HHHHHHHhhccchHHHHHHHHHH
Confidence 89999999999888642 233344433 4999999999975
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.1 Score=48.06 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=75.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|.+.++.... .|+|+|-.+=+ ..+++.+.+ |. .. .+.++...++|+|+.|-..... .
T Consensus 32 L~d~d~~vR~-~A~~aL~~~~~------------~~~~~~l~~-ll-~~-----~d~~vR~~A~~aLg~lg~~~~~---~ 88 (280)
T PRK09687 32 LDDHNSLKRI-SSIRVLQLRGG------------QDVFRLAIE-LC-SS-----KNPIERDIGADILSQLGMAKRC---Q 88 (280)
T ss_pred HhCCCHHHHH-HHHHHHHhcCc------------chHHHHHHH-HH-hC-----CCHHHHHHHHHHHHhcCCCccc---h
Confidence 4456666666 88888875532 122345555 44 23 3789999999999998442211 1
Q ss_pred cCcHHHHHHh-hcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 82 AGGLASVLLF-IKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 82 ~G~l~alL~~-ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.-.+..+... ++.....+.+ .|+.++.++|..-.. ...++++.|...+.++|.+|...+.++|.++.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~----~A~~aLG~~~~~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRA----SAINATGHRCKKNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHH----HHHHHHhcccccccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 1223333333 2223344555 889999998854322 23456666767777888888888888886554
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.061 Score=52.11 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=115.0
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGG 84 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~ 84 (256)
++++.-- .+--++..+.+..|+...- ++..|.+-|. .+...+..-|+.+|.+|.... +. .-.
T Consensus 54 ~~~~~Kr-l~yl~l~~~~~~~~~~~~l------~~n~l~kdl~-------~~n~~~~~lAL~~l~~i~~~~---~~-~~l 115 (526)
T PF01602_consen 54 KDLELKR-LGYLYLSLYLHEDPELLIL------IINSLQKDLN-------SPNPYIRGLALRTLSNIRTPE---MA-EPL 115 (526)
T ss_dssp SSHHHHH-HHHHHHHHHTTTSHHHHHH------HHHHHHHHHC-------SSSHHHHHHHHHHHHHH-SHH---HH-HHH
T ss_pred CCHHHHH-HHHHHHHHHhhcchhHHHH------HHHHHHHhhc-------CCCHHHHHHHHhhhhhhcccc---hh-hHH
Confidence 3344333 4445667777777774422 3456666555 346778899999999997432 22 223
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHH-HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCC
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPE-AVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGV 163 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~-~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~ 163 (256)
+..+...+......+.| +|+-++.++++..| ..+++ ++|.|.++|..+|+.|+..|+.++..+ . .++
T Consensus 116 ~~~v~~ll~~~~~~VRk----~A~~~l~~i~~~~p---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~---~~~ 183 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRK----KAALALLKIYRKDP---DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--K---CND 183 (526)
T ss_dssp HHHHHHHHHSSSHHHHH----HHHHHHHHHHHHCH---CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--H---CTH
T ss_pred HHHHHHHhcCCchHHHH----HHHHHHHHHhccCH---HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--c---cCc
Confidence 56667777666667777 99999999998732 25565 799999999999999999999999999 1 112
Q ss_pred CccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 164 DPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 164 ~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+...-+-+.+++.|.+++.. .+|-....++++|..+++..+...
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~------------------------------~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSD------------------------------PDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTC------------------------------CSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred chhhhhHHHHHHHhhhcccc------------------------------cchHHHHHHHHHHHhcccCChhhh
Confidence 22112223555555555521 244567788888888888888877
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4199|consensus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.12 Score=49.51 Aligned_cols=161 Identities=16% Similarity=0.350 Sum_probs=111.0
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcC
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAG 83 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G 83 (256)
+|+..- .++-+|--++ +..|.... +++.|.+..|.+.+. ... +-....++-||+..|..|+|... +.|++.|
T Consensus 255 dp~~L~-~l~~tl~~lA-Vr~E~C~~-I~e~GGl~tl~~~i~-d~n--~~~~r~l~k~~lslLralAG~DsvKs~IV~~g 328 (461)
T KOG4199|consen 255 DPDSLV-SLSTTLKALA-VRDEICKS-IAESGGLDTLLRCID-DSN--EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKG 328 (461)
T ss_pred CccHHH-HHHHHHHHHH-HHHHHHHH-HHHccCHHHHHHHHh-hhc--hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhc
Confidence 366666 7777777766 34555557 469999999998776 211 12345689999999999999755 4799999
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHH--HHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhcc
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPE--AVEALSLLLRHE-DTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~--~lP~L~~lL~~~-D~~vv~~ac~als~L~d~~~ 159 (256)
|++.+.+..--|+...|. ...++.+++-+|-++|.... .+.. +--++..+-.|. -..|--++||.+-.++-+
T Consensus 329 g~~~ii~l~~~h~~~p~V--i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-- 404 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLV--IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-- 404 (461)
T ss_pred ChHHHHHHHHHcCCChHH--HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh--
Confidence 999999988777655443 44789999999988744332 2211 111222222344 466888999999999987
Q ss_pred CCCCCccchhccccHHHH
Q psy15268 160 RRGVDPAPLAQHGLASEL 177 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~L 177 (256)
..+.=..+++.|+=.-+
T Consensus 405 -s~~~~~~~l~~GiE~Li 421 (461)
T KOG4199|consen 405 -SAENRTILLANGIEKLI 421 (461)
T ss_pred -hhhccchHHhccHHHHH
Confidence 34666778888853333
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=41.74 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=62.9
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCC
Q psy15268 39 MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKM 118 (256)
Q Consensus 39 Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~ 118 (256)
||.|++.|. . .++.++...++++|+++-.. ..+..+..+++.....+++ .|.|.+.++
T Consensus 1 i~~L~~~l~-~-----~~~~~vr~~a~~~L~~~~~~--------~~~~~L~~~l~d~~~~vr~----~a~~aL~~i---- 58 (88)
T PF13646_consen 1 IPALLQLLQ-N-----DPDPQVRAEAARALGELGDP--------EAIPALIELLKDEDPMVRR----AAARALGRI---- 58 (88)
T ss_dssp HHHHHHHHH-T-----SSSHHHHHHHHHHHHCCTHH--------HHHHHHHHHHTSSSHHHHH----HHHHHHHCC----
T ss_pred CHHHHHHHh-c-----CCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHHcCCCHHHHH----HHHHHHHHh----
Confidence 688999885 2 44789999999999965322 3477777888655566777 899988865
Q ss_pred CCCCCChHHHHHHHHHhhcCCCH-HHHHHHHHHHH
Q psy15268 119 EPQDPQLPEAVEALSLLLRHEDT-HISDAALRCFA 152 (256)
Q Consensus 119 ~~~~~~v~~~lP~L~~lL~~~D~-~vv~~ac~als 152 (256)
.-.+++|.|..++..++. .|...|.++++
T Consensus 59 -----~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 -----GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 136789999999887654 45677777763
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.036 Score=53.68 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
+.||..+- .|-|+|.++. +|+-.+.+ +|.+.+.|. .+...|+.-|+-++.+|.+..|+.+-..
T Consensus 90 ~~n~~~~~-lAL~~l~~i~--~~~~~~~l------~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~~~~~- 152 (526)
T PF01602_consen 90 SPNPYIRG-LALRTLSNIR--TPEMAEPL------IPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDLVEDE- 152 (526)
T ss_dssp SSSHHHHH-HHHHHHHHH---SHHHHHHH------HHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCCHHGG-
T ss_pred CCCHHHHH-HHHhhhhhhc--ccchhhHH------HHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHHHHHH-
Confidence 45666666 8888998887 46655432 366666554 2356899999999999999888866555
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
-+..+.+.++.....++. .|+..+..+ +.++.. ..+...++.|.+++...|+.+...+...+.+++....
T Consensus 153 ~~~~l~~lL~d~~~~V~~----~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-- 224 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVS----AALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-- 224 (526)
T ss_dssp HHHHHHHHTTHSSHHHHH----HHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH--
T ss_pred HHHHHhhhccCCcchhHH----HHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh--
Confidence 677777777666666666 888777777 222222 3577777888888888888888888888887764311
Q ss_pred CCCccchhccccHHHHHHHhc
Q psy15268 162 GVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+..+. ..+++.+..+|.
T Consensus 225 -~~~~~---~~~i~~l~~~l~ 241 (526)
T PF01602_consen 225 -EDADK---NRIIEPLLNLLQ 241 (526)
T ss_dssp -HHHHH---HHHHHHHHHHHH
T ss_pred -hhhhH---HHHHHHHHHHhh
Confidence 11100 456666666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.065 Score=49.55 Aligned_cols=203 Identities=14% Similarity=0.126 Sum_probs=134.4
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHh-----CCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAI-----DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-- 77 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~-----~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-- 77 (256)
+++|.+. -.-.-+..+++..|+....+... ......|.+.|. +++.-+.+++...|..+...++.
T Consensus 69 ~~~d~v~-yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-------~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 69 SNDDTVQ-YVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-------RNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp --HHHHH-HHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--------SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred CcHHHHH-HHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHcCCccc
Confidence 4566777 77777888888888777543321 125677776443 44788999999999999776553
Q ss_pred hhhhcCcHHHHHHhhcccC----cccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhh-------cCCCHHHHH
Q psy15268 78 SVFEAGGLASVLLFIKQHG----HSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLL-------RHEDTHISD 145 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~----~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL-------~~~D~~vv~ 145 (256)
.-...+.+..+++++.... ...|. .|+..+.++.|.+.-.. +.=.+.++.|..+| +..+.++.=
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~----~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQY----IAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---H----HHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHH----HHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 2222577788888886421 23344 89999999998754333 22267777777777 234677888
Q ss_pred HHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHH
Q psy15268 146 AALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSL 225 (256)
Q Consensus 146 ~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 225 (256)
.++.|+--++ | +++-.+.+.+.++++.|++++..+ ..--.+.-++.+
T Consensus 217 ~~ll~lWlLS--F--~~~~~~~~~~~~~i~~L~~i~~~~-----------------------------~KEKvvRv~la~ 263 (312)
T PF03224_consen 217 QALLCLWLLS--F--EPEIAEELNKKYLIPLLADILKDS-----------------------------IKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHHHHHT--T--SHHHHHHHHTTSHHHHHHHHHHH-------------------------------SHHHHHHHHHH
T ss_pred HHHHHHHHHh--c--CHHHHHHHhccchHHHHHHHHHhc-----------------------------ccchHHHHHHHH
Confidence 8888877776 4 346678888899999999999742 122455667888
Q ss_pred HHHHhcCCHH-HHHHHHhcChHHHHhhh
Q psy15268 226 LSALCRGSPS-ITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 226 Ls~l~~~S~~-it~~Ll~~~l~~~l~~~ 252 (256)
|.+|+...++ ....++..+++.++..+
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 8899888886 77788888888877654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.016 Score=36.53 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 128 AVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 128 ~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
++|.|.++++++|++++..+||++.+|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.052 Score=55.55 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHH-------Hh-------CCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIV-------AI-------DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~iv-------v~-------~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
+.+.+.=--||.++-+..| -.+.+| +. ....|.||+.|. ++.-...|-|+.||.||+.
T Consensus 86 ~~~~yiKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~-------s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLD-------SPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHHHHhc-------CCcccccchhHHHHHHHHh
Confidence 3333455667777777666 333321 01 234688998776 4466789999999999999
Q ss_pred cccch----hhhcCcHHHHH-HhhcccCcccchhhhhHHHHHHHHhcCC----CCCCCC--ChHHHHHHHHHhhcCCCHH
Q psy15268 74 REAGS----VFEAGGLASVL-LFIKQHGHSVHKDTLHSAMAVVSRLCSK----MEPQDP--QLPEAVEALSLLLRHEDTH 142 (256)
Q Consensus 74 d~~~~----Vl~~G~l~alL-~~ldff~~~~qr~~l~~a~~~vsNlCr~----~~~~~~--~v~~~lP~L~~lL~~~D~~ 142 (256)
|.+.. +. ..-+.+++ .|+.||..+.-+ +| .-+=-|-| ..+... .+-..+..|-.+-+-+|++
T Consensus 158 Dsa~~lds~~~-~rpl~~mipkfl~f~~h~spk--iR----s~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 158 DSAQFLDSDVL-TRPLNIMIPKFLQFFKHPSPK--IR----SHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred hhHHHHhhhcc-cCchHHhHHHHHHHHhCCChh--HH----HHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHH
Confidence 97742 33 34455554 466677654433 11 22323333 222222 5777788877777788999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccchhcc--ccHHHHHHHhc
Q psy15268 143 ISDAALRCFASLSDRFTRRGVDPAPLAQH--GLASELLIRLS 182 (256)
Q Consensus 143 vv~~ac~als~L~d~~~~~~~~i~~l~~~--glv~~Lv~LL~ 182 (256)
|..++|.+|.+|.|- +++.++.| ++++-++++-.
T Consensus 231 VRk~vC~alv~Llev------r~dkl~phl~~IveyML~~tq 266 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEV------RPDKLVPHLDNIVEYMLQRTQ 266 (885)
T ss_pred HHHHHHHHHHHHHHh------cHHhcccchHHHHHHHHHHcc
Confidence 999999999999985 45555544 56666665543
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.16 Score=48.31 Aligned_cols=134 Identities=18% Similarity=0.216 Sum_probs=97.6
Q ss_pred hCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhhhcCcHHHHHHhhcccC-cccchhhhhHHHHH
Q psy15268 35 IDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVFEAGGLASVLLFIKQHG-HSVHKDTLHSAMAV 110 (256)
Q Consensus 35 ~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl~~G~l~alL~~ldff~-~~~qr~~l~~a~~~ 110 (256)
..|..+.+...|. .+.-.|+|-|.|++|-+++-.|. .|++.|++..++..++--. .++-. +|+-.
T Consensus 122 ~~ggl~~ll~~l~-------~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~----kaL~A 190 (342)
T KOG2160|consen 122 SLGGLVPLLGYLE-------NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRT----KALFA 190 (342)
T ss_pred hccCHHHHHHHhc-------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHH----HHHHH
Confidence 5555555555554 44789999999999999999996 6999999999999998433 33434 99999
Q ss_pred HHHhcCCCCCCC--CChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 111 VSRLCSKMEPQD--PQLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 111 vsNlCr~~~~~~--~~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++++-|+-+|.- |.--.-+-.|..+++. .+.+..-.|..=+++|...-.. .-+.....|+...++.+..
T Consensus 191 issLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s---~~d~~~~~~f~~~~~~l~~ 263 (342)
T KOG2160|consen 191 ISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS---DEDIASSLGFQRVLENLIS 263 (342)
T ss_pred HHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh---hhhHHHHhhhhHHHHHHhh
Confidence 999999976644 3333337778888887 7888888999999999977332 2223344465555555554
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.035 Score=51.36 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=106.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~V 79 (256)
|+..+.-.+. .|++.|+.++...+..... . ..++++.|.+.|. ... +.+..++.+-|+++|.++.+. ++..+
T Consensus 114 l~~~D~~i~~-~a~~iLt~Ll~~~~~~~~~-~-~~~~l~~ll~~L~-~~l--~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 114 LDRNDSFIQL-KAAFILTSLLSQGPKRSEK-L-VKEALPKLLQWLS-SQL--SSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp -S-SSHHHHH-HHHHHHHHHHTSTTT--HH-H-HHHHHHHHHHHHH--TT---HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred hcCCCHHHHH-HHHHHHHHHHHcCCccccc-h-HHHHHHHHHHHHH-Hhh--cCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 3455666666 9999999999988887754 2 3678888888777 311 223345557788888888765 55678
Q ss_pred hhcCcHHHHHHhhc-----ccCcccch--hhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhc-CCCHHHHHHHHHHH
Q psy15268 80 FEAGGLASVLLFIK-----QHGHSVHK--DTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLR-HEDTHISDAALRCF 151 (256)
Q Consensus 80 l~~G~l~alL~~ld-----ff~~~~qr--~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~-~~D~~vv~~ac~al 151 (256)
.++|++..+...++ -.+...|- .++ -++|.+|--..... ...-..++|.|.++++ ..-.+|+--+..+|
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l-l~lWlLSF~~~~~~--~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQAL-LCLWLLSFEPEIAE--ELNKKYLIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHH-HHHHHHTTSHHHHH--HHHTTSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHH-HHHHHHhcCHHHHH--HHhccchHHHHHHHHHhcccchHHHHHHHHH
Confidence 89999999999993 22333332 111 47787763221110 0011228999999976 45778999999999
Q ss_pred HHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 152 ASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 152 s~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-.+.+.-. .+-++.+++.|+++-+..|..
T Consensus 265 ~Nl~~~~~--~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 265 RNLLSKAP--KSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHTTSSSS--TTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHhccH--HHHHHHHHHccHHHHHHHHhc
Confidence 99998742 236778888887766666653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.35 Score=50.87 Aligned_cols=209 Identities=16% Similarity=0.170 Sum_probs=118.5
Q ss_pred HHHhccCchhhhHHHHhCCcHHHHHHHhhcccCC-CCCCcHHHHHHHHHHHHHHhccccc--------hhhhcC----cH
Q psy15268 19 TYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGI-ASRTSKDLAEQCIKVLELICTREAG--------SVFEAG----GL 85 (256)
Q Consensus 19 Tni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~-~~~~~~DlaEQal~aLe~Is~d~~~--------~Vl~~G----~l 85 (256)
-+++--.+..-+. .++-||++.|.+.|.+..+- .+..-.+++||.+..+|-|-.+-.. .....| ..
T Consensus 146 L~~c~Kv~~NR~~-Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~ 224 (802)
T PF13764_consen 146 LRYCCKVKVNRRA-LLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDK 224 (802)
T ss_pred HHHHHhhHHHHHH-HHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccH
Confidence 3333344555544 56899999999999744430 0112379999999999999766221 112222 44
Q ss_pred HHHHHhhcccCccc---chhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhcc
Q psy15268 86 ASVLLFIKQHGHSV---HKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 86 ~alL~~ldff~~~~---qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~~ 159 (256)
..+-.|++.-.... ....+...+.++.+++.+.+.+-. .|.-.-|.| ++=.. +++.=-.-...||+.++++..
T Consensus 225 ~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~ 303 (802)
T PF13764_consen 225 EQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIP 303 (802)
T ss_pred HHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHhc-ChhhcccccCchHHHHHHHHHHHHhcCC
Confidence 44444444322221 123455677788888887644433 444444444 33111 111111344889999999875
Q ss_pred CCC--CC-ccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 160 RRG--VD-PAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 160 ~~~--~~-i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
++. .+ -+.+++.|+++..++.|..+-... .+. ++++ =...++-.+.--++++|.-||+|.+.
T Consensus 304 ~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~----------~~~---~s~e-Wk~~l~~psLp~iL~lL~GLa~gh~~- 368 (802)
T PF13764_consen 304 NNSNGNRLKDKILESGIVQDAIDYLLKHFPSL----------KNT---DSPE-WKEFLSRPSLPYILRLLRGLARGHEP- 368 (802)
T ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHhCccc----------ccC---CCHH-HHHHhcCCcHHHHHHHHHHHHhcCHH-
Confidence 433 23 456778899999999996532210 000 0110 01223345566899999999999665
Q ss_pred HHHHHhcC
Q psy15268 237 TSDLLHSD 244 (256)
Q Consensus 237 t~~Ll~~~ 244 (256)
++.++..+
T Consensus 369 tQ~~~~~~ 376 (802)
T PF13764_consen 369 TQLLIAEQ 376 (802)
T ss_pred HHHHHHhh
Confidence 44445444
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.62 Score=44.36 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=130.4
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcC
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAG 83 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G 83 (256)
+..+-+.|||.|+..+.-+|..-.. |.+.|+.+.|...|. ..+..++.-+|+-|+...-+.++ ...++.+
T Consensus 137 ~~~lR~~Aa~Vigt~~qNNP~~Qe~-v~E~~~L~~Ll~~ls------~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 137 DAELRELAARVIGTAVQNNPKSQEQ-VIELGALSKLLKILS------SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHH-HHHcccHHHHHHHHc------cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 3444459999999999999999866 779999999998776 34478888899999988888766 3688999
Q ss_pred cHHHHHHhhccc--CcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHH-HHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 84 GLASVLLFIKQH--GHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEAL-SLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 84 ~l~alL~~ldff--~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L-~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
|...+..-+.-. ..-.|| +++..++++-........ .-..-+|.. .++....|.++-+.+..++..+..-+.
T Consensus 210 G~~~L~~vl~~~~~~~~lkr----K~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 210 GYQVLRDVLQSNNTSVKLKR----KALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred CHHHHHHHHHcCCcchHHHH----HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 988888877653 344567 999999999877644332 222223332 344556677888888888777776654
Q ss_pred CCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHH
Q psy15268 160 RRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITS 238 (256)
Q Consensus 160 ~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~ 238 (256)
...+....+... .++++.++++..+ .....-..+..-+-..|.-.|.+-+
T Consensus 286 ~~~~~~~~~~~l~e~l~~~~q~~~~~-----------------------------~~~~~e~~l~~~l~~~~~e~~~~~~ 336 (342)
T KOG2160|consen 286 TRKELFVSLLNLEELLKSLIQIISDH-----------------------------AALEEERQLVNSLWEICGEVPSILR 336 (342)
T ss_pred hcchhhhhhhhHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 322222222222 3566666666421 1113334566666777777666666
Q ss_pred HHHh
Q psy15268 239 DLLH 242 (256)
Q Consensus 239 ~Ll~ 242 (256)
+++.
T Consensus 337 ~~~~ 340 (342)
T KOG2160|consen 337 KLLG 340 (342)
T ss_pred HHhc
Confidence 5543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.94 Score=47.37 Aligned_cols=136 Identities=8% Similarity=0.068 Sum_probs=97.2
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch-hhh
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS-VFE 81 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~-Vl~ 81 (256)
.+.+|-.-- .||-|+..+....|+-. .+.|-++.|.++|. -++..|.-.|+.+|-.|..+.|+. -+.
T Consensus 150 ~D~~pYVRK-tAalai~Kly~~~pelv----~~~~~~~~L~~LL~-------D~dp~Vv~nAl~aL~eI~~~~~~~l~l~ 217 (746)
T PTZ00429 150 ADPDPYVRK-TAAMGLGKLFHDDMQLF----YQQDFKKDLVELLN-------DNNPVVASNAAAIVCEVNDYGSEKIESS 217 (746)
T ss_pred cCCCHHHHH-HHHHHHHHHHhhCcccc----cccchHHHHHHHhc-------CCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence 344544444 88999999998888643 25677788887554 235678899999999998776643 244
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
.+.+..++..+..++.-.|- ..+-++ |+..|..+....+++..+...|+|..+-|+=.|+.++.++...
T Consensus 218 ~~~~~~Ll~~L~e~~EW~Qi----~IL~lL---~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 218 NEWVNRLVYHLPECNEWGQL----YILELL---AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHhhcCChHHHH----HHHHHH---HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 55566677777666666666 444444 4454433346778888888889999999999999999999864
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.07 Score=55.82 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=66.5
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC--CC----CChHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhh
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP--QD----PQLPEAVEALSLLLRHE-DTHISDAALRCFASLSD 156 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~--~~----~~v~~~lP~L~~lL~~~-D~~vv~~ac~als~L~d 156 (256)
-+..+|+-+.-.+-..| .+..+.-+|..... .+ +.++.++|.|..||+|+ ..+|.-.||+|+.|++|
T Consensus 168 k~kkLL~gL~~~~Des~------Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQ------QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHHhccccCChHH------HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 45555555543321122 24455567764322 11 47999999999999987 79999999999999999
Q ss_pred hccCCCCCccchhccccHHHHHHHhc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-. |.-...++++|.||-|++.|.
T Consensus 242 vl---P~S~a~vV~~~aIPvl~~kL~ 264 (1051)
T KOG0168|consen 242 VL---PRSSAIVVDEHAIPVLLEKLL 264 (1051)
T ss_pred hc---cchhheeecccchHHHHHhhh
Confidence 96 678999999999999998875
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.49 Score=50.88 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=108.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhh---hcCcHHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVF---EAGGLASVL 89 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl---~~G~l~alL 89 (256)
.|-.||.-+.||.+++... .-...+|..++.|. -+...|.--|+.|+|.+|.|.+..+- ..-.+.+++
T Consensus 367 AaL~Als~i~EGc~~~m~~--~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 367 AALLALSVIAEGCSDVMIG--NLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHcccHHHHHH--HHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHH
Confidence 6678999999999999865 24666788887666 56899999999999999999665333 334555677
Q ss_pred Hhhccc-CcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHH-HHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCc
Q psy15268 90 LFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVE-ALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDP 165 (256)
Q Consensus 90 ~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP-~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i 165 (256)
.-+|.+ +..+|. .|...+-|.--+-+.+- +++...+. -|..++++.-+.|.|.+..++..++|.. .+++
T Consensus 438 ~~ld~~~~~rV~a----hAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA---~~~F 510 (1075)
T KOG2171|consen 438 ALLDSTQNVRVQA----HAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA---QEKF 510 (1075)
T ss_pred HHhcccCchHHHH----HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---hhhh
Confidence 777755 345666 56666666543332221 25555554 4444678888999999999999999984 3445
Q ss_pred cchhccccHHHHHHHhcccC
Q psy15268 166 APLAQHGLASELLIRLSNAA 185 (256)
Q Consensus 166 ~~l~~~glv~~Lv~LL~~~~ 185 (256)
.+-++ -+.+.|.+.|.+..
T Consensus 511 ~pY~d-~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 511 IPYFD-RLMPLLKNFLQNAD 529 (1075)
T ss_pred HhHHH-HHHHHHHHHHhCCC
Confidence 44443 46677777776543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.14 Score=31.39 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 128 AVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 128 ~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++|.+.++++.++++|...|++||..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999998863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.38 Score=35.08 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=53.5
Q ss_pred HHHHHHhh-cccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCC
Q psy15268 85 LASVLLFI-KQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGV 163 (256)
Q Consensus 85 l~alL~~l-dff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~ 163 (256)
++.++..+ ......+++ .|++++.++ .-.+++|.|..+++++|+.|...|++++.++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~----~a~~~L~~~---------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRA----EAARALGEL---------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHH----HHHHHHHCC---------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHH----HHHHHHHHc---------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 45677777 433445555 788877733 234889999999999999999999999998843
Q ss_pred CccchhccccHHHHHHHhcc
Q psy15268 164 DPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 164 ~i~~l~~~glv~~Lv~LL~~ 183 (256)
...++.|.+++.+
T Consensus 61 -------~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 61 -------PEAIPALIKLLQD 73 (88)
T ss_dssp -------HHTHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHcC
Confidence 3467888888853
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.25 Score=42.85 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chhhhcCc
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSVFEAGG 84 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~Vl~~G~ 84 (256)
.-+.- .||.++..++......... .....+|.|.+++. .+..-+++.|..+|..|....+ ..++
T Consensus 67 s~v~~-~A~~~l~~l~~~l~~~~~~--~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~~~---- 132 (228)
T PF12348_consen 67 SKVSK-TACQLLSDLARQLGSHFEP--YADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPKIL---- 132 (228)
T ss_dssp --HHH-HHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--HHH----
T ss_pred HHHHH-HHHHHHHHHHHHHhHhHHH--HHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHHHH----
Confidence 34455 8999999999988887754 24567899998887 2357899999999999988654 1111
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCC-CC-C----ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEP-QD-P----QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~-~~-~----~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
...+......-+ ...| ..++-.+..+....+. .+ . .+..+.|.+...+.-.|++|.+.|-.+|..+...+
T Consensus 133 ~~~l~~~~~~Kn-~~vR---~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 133 LEILSQGLKSKN-PQVR---EECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHTT-S--HHHH---HHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHH---HHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111222222212 2233 1344445566666551 22 1 25789999999999999999999999999987765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.3 Score=44.43 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=84.1
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----hhhhcCcHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG----SVFEAGGLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~----~Vl~~G~l~al 88 (256)
.|.-||--++...-+.. ....+|.+=+++. .++-.=.|-++-|+|-| -++|. .=+-.++++.+
T Consensus 345 AAg~CL~l~A~~~~D~I-----v~~Vl~Fiee~i~-------~pdwr~reaavmAFGSI-l~gp~~~~Lt~iV~qalp~i 411 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGDDI-----VPHVLPFIEENIQ-------NPDWRNREAAVMAFGSI-LEGPEPDKLTPIVIQALPSI 411 (859)
T ss_pred HHHHHHHHHHHHhcccc-----hhhhHHHHHHhcC-------CcchhhhhHHHHHHHhh-hcCCchhhhhHHHhhhhHHH
Confidence 45556655554222211 1244444444554 44566677788888887 33443 23456788888
Q ss_pred HHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC---ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 89 LLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP---QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 89 L~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~---~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+..+......+-+ ++-|++-+.|...+..-- +....++.|.+-| ++.|+|..++||+|..|+|..
T Consensus 412 i~lm~D~sl~Vkd----TaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 412 INLMSDPSLWVKD----TAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAA 479 (859)
T ss_pred HHHhcCchhhhcc----hHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHH
Confidence 8888755556666 999999999999875442 4555555554443 466999999999999999875
|
|
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=92.47 E-value=2.4 Score=43.52 Aligned_cols=164 Identities=20% Similarity=0.177 Sum_probs=114.2
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhc
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEA 82 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~ 82 (256)
+|+..+ .|-+=.-|..-|.++.-.. +.+.||+|.+|..+..+ -...++--|+...|+....... +.++++
T Consensus 22 dpe~lv-rai~~~kN~vig~~~~K~~-~ik~GAv~~Ll~L~s~e-----~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 22 DPEQLV-RAIYMSKNLVIGFTDNKET-NIKLGAVELLLALLSLE-----DGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred CHHHHH-HHHHHhcchhhcCCCccch-hhhhcchHHHHhhcccc-----CCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 445545 7888888999999988865 56999999999977722 2356777788888887755432 589999
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC---C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD---P-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~---~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+.+..+++.++.-. .+ .++...+-...++..-.+..| . +-+.+++.+.-++.++-+.+..--|.-++.++..
T Consensus 95 ~~ll~Ll~LLs~sD--~~-~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~- 170 (678)
T KOG1293|consen 95 IELLKLLQLLSESD--SL-NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST- 170 (678)
T ss_pred hhHHHHHHHhcCcc--hH-hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-
Confidence 99999999997533 12 223344444555554444444 2 6788999998887767667766666666665543
Q ss_pred cCCCCCccchhccccHHHHHHHhcc
Q psy15268 159 TRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 159 ~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.++=--++++|+.+.+.-++..
T Consensus 171 ---~~hq~Il~Na~i~ekI~~l~~~ 192 (678)
T KOG1293|consen 171 ---KDHQLILCNAGILEKINILLMY 192 (678)
T ss_pred ---chhhheeccccchhhHHHHHHh
Confidence 2444457788999998888753
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.65 Score=46.72 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHhcCCCCCC-CCChHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHH
Q psy15268 102 DTLHSAMAVVSRLCSKMEPQ-DPQLPEAVEALSLLLRHEDT-HISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLI 179 (256)
Q Consensus 102 ~~l~~a~~~vsNlCr~~~~~-~~~v~~~lP~L~~lL~~~D~-~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~ 179 (256)
..+.-|+.+++-+|+--+-. ++.+-.-+|.|.+.+.+.+. .++++++.|+..++ + .++-.+.+++.|.++.|.+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s---~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-S---SPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-c---CcHhHHHHHhcCCHHHHHH
Confidence 34458999999999921111 24899999999999876665 99999999999999 4 4678999999999999999
Q ss_pred Hhcc
Q psy15268 180 RLSN 183 (256)
Q Consensus 180 LL~~ 183 (256)
.+.+
T Consensus 148 i~~~ 151 (543)
T PF05536_consen 148 IIPN 151 (543)
T ss_pred HHHh
Confidence 9975
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.7 Score=43.68 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|+..+|+... .|+++|-.+-. +..+.|++.|. .+..+|+..++++|+.+-.
T Consensus 693 L~~~d~~VR~-~A~~aL~~~~~-------------~~~~~l~~~L~-------D~d~~VR~~Av~aL~~~~~-------- 743 (897)
T PRK13800 693 LGSPDPVVRA-AALDVLRALRA-------------GDAALFAAALG-------DPDHRVRIEAVRALVSVDD-------- 743 (897)
T ss_pred hcCCCHHHHH-HHHHHHHhhcc-------------CCHHHHHHHhc-------CCCHHHHHHHHHHHhcccC--------
Confidence 4455666666 77777766421 22345555554 3366788888888887621
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
..+++..+......+++ .+...+........ ..+|.|..+++.+|+.|...|..+|..+.+
T Consensus 744 ---~~~l~~~l~D~~~~VR~----~aa~aL~~~~~~~~-------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 744 ---VESVAGAATDENREVRI----AVAKGLATLGAGGA-------PAGDAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred ---cHHHHHHhcCCCHHHHH----HHHHHHHHhccccc-------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 23345555555555555 66666666543321 226667777777777777777777777653
|
|
| >KOG2122|consensus | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.1 Score=49.85 Aligned_cols=197 Identities=18% Similarity=0.132 Sum_probs=129.9
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchhhhc-CcHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSVFEA-GGLASV 88 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~Vl~~-G~l~al 88 (256)
.|.-||||+-=|--..-...-.+.|-+.+++.-|. . ...||-.-.-..|.|+|=+ +-+.||+. |.+.++
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~-s------~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI-S------APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHh-c------ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 57789999865443333334557888999998886 2 2468877777889999866 33567754 656555
Q ss_pred HHhhc----ccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCC----HHHHHHHHHHHHHhhhhcc
Q psy15268 89 LLFIK----QHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHED----THISDAALRCFASLSDRFT 159 (256)
Q Consensus 89 L~~ld----ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D----~~vv~~ac~als~L~d~~~ 159 (256)
..-.- .|+...-. +|+|=++--|.- +..++ .|-.+|-.|...|.|+- -.|+|.+=-.|-|++.-..
T Consensus 443 a~~al~~~kEsTLKavL----SALWNLSAHcte-NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA 517 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVL----SALWNLSAHCTE-NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA 517 (2195)
T ss_pred HHHHHHhcccchHHHHH----HHHhhhhhcccc-cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence 54332 12222222 688877766654 23445 89999999999998874 4688887766666654433
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
...+.=|.+-++..+..|++.|.++.- -.++...+.|.+|..-||+--+-
T Consensus 518 t~E~yRQILR~~NCLq~LLQ~LKS~SL------------------------------TiVSNaCGTLWNLSAR~p~DQq~ 567 (2195)
T KOG2122|consen 518 TCEDYRQILRRHNCLQTLLQHLKSHSL------------------------------TIVSNACGTLWNLSARSPEDQQM 567 (2195)
T ss_pred ccchHHHHHHHhhHHHHHHHHhhhcce------------------------------EEeecchhhhhhhhcCCHHHHHH
Confidence 334556778899999999999975421 12223456677888888887777
Q ss_pred HHhcChHHHHhh
Q psy15268 240 LLHSDLPDAIGC 251 (256)
Q Consensus 240 Ll~~~l~~~l~~ 251 (256)
|...+-...++.
T Consensus 568 LwD~gAv~mLrn 579 (2195)
T KOG2122|consen 568 LWDDGAVPMLRN 579 (2195)
T ss_pred HHhcccHHHHHH
Confidence 776664444443
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=91.39 E-value=3 Score=40.19 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHHHhccccchhh-hcCcHHHHHHhhcccCc-----------cc--chhhhhHHHHHHHHhcCCCCCCC
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVF-EAGGLASVLLFIKQHGH-----------SV--HKDTLHSAMAVVSRLCSKMEPQD 122 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl-~~G~l~alL~~ldff~~-----------~~--qr~~l~~a~~~vsNlCr~~~~~~ 122 (256)
+.++++++-+++|.|-+|.++..= +.|..--+|.-=+||.. .. .| .+-+-.++++.+++|.+-
T Consensus 282 ~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k---~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 282 SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK---SNYLTALSHLLKNVPKSV 358 (415)
T ss_pred ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH---HHHHHHHHHHHhhCCHHH
Confidence 578999999999999999543211 11222212111112211 11 12 256778899999987554
Q ss_pred --CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhcc--ccHHHHHHH
Q psy15268 123 --PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQH--GLASELLIR 180 (256)
Q Consensus 123 --~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~--glv~~Lv~L 180 (256)
+.+.+.+|.|-+-|..+|+++...+..++..+.+. ..+.+.++ .+|++|+++
T Consensus 359 l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~------~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE------APELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc------CHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999999976 23333333 466666653
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.2 Score=46.11 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC--cHHHHHHhhcccCcccchhhhhHHHHHHHHh
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG--GLASVLLFIKQHGHSVHKDTLHSAMAVVSRL 114 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G--~l~alL~~ldff~~~~qr~~l~~a~~~vsNl 114 (256)
-..|.|-++|. .+ .=-+.|-.+-|||-|+.-+-+..+.+= -+.-+++.+|.-..-+-+ -.-||+++.
T Consensus 393 ~l~PlLk~~L~--~~-----~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs----ITCWTLsRy 461 (885)
T KOG2023|consen 393 ILLPLLKEHLS--SE-----EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS----ITCWTLSRY 461 (885)
T ss_pred HHHHHHHHHcC--cc-----hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee----eeeeeHhhh
Confidence 34677777776 22 456899999999999876544333321 223344555544444444 667999988
Q ss_pred cCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 115 CSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 115 Cr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
-..+-..+ .+.++++..|-+.+--..++|-|.||.||+-+-+.
T Consensus 462 s~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 77763333 47888888777777778899999999999998876
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=88.98 E-value=5.7 Score=37.06 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred CchhHHHHHHHHHHHHhcc--CchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 6 APENVLEVTARAMTYYLDV--SAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~--~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
.++-+. .|++++.-++=- ..+.... +.....|.|.+.+. . .+....++..|+.||+.++--+... ..
T Consensus 99 ~~~E~~-lA~~~l~Ll~ltlg~g~~~~e--i~~~~~~~L~~~l~-d----~s~~~~~R~~~~~aLai~~fv~~~d---~~ 167 (309)
T PF05004_consen 99 KSEEQA-LAARALALLALTLGAGEDSEE--IFEELKPVLKRILT-D----SSASPKARAACLEALAICTFVGGSD---EE 167 (309)
T ss_pred CHHHHH-HHHHHHHHHhhhcCCCccHHH--HHHHHHHHHHHHHh-C----CccchHHHHHHHHHHHHHHHhhcCC---hh
Confidence 334455 677876655322 1233333 36678898888766 2 2334677788999999874432221 11
Q ss_pred cHHHHHHhhc--ccCc----ccc---------hhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHH
Q psy15268 84 GLASVLLFIK--QHGH----SVH---------KDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTHISDA 146 (256)
Q Consensus 84 ~l~alL~~ld--ff~~----~~q---------r~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ 146 (256)
.+..++..++ |+.. .-+ -.+.-.|+..-+-+-...++.. ..+...+|.|..+|.++|.+|.-.
T Consensus 168 ~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiA 247 (309)
T PF05004_consen 168 ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIA 247 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2221222222 1100 000 0122244444444555555433 267889999999999999999999
Q ss_pred HHHHHHHhhhhccC
Q psy15268 147 ALRCFASLSDRFTR 160 (256)
Q Consensus 147 ac~als~L~d~~~~ 160 (256)
|--+++-|-+....
T Consensus 248 AGEaiAll~E~~~~ 261 (309)
T PF05004_consen 248 AGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887653
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.82 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc
Q psy15268 39 MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT 73 (256)
Q Consensus 39 Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~ 73 (256)
+|.|.+.|. -++.+|++.|+++|+.|+.
T Consensus 2 lp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 688888776 3478999999999999975
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=88.75 E-value=12 Score=40.11 Aligned_cols=134 Identities=12% Similarity=0.145 Sum_probs=95.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-hhhhcCcHHHHHHh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-SVFEAGGLASVLLF 91 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~Vl~~G~l~alL~~ 91 (256)
.-.-+|+-+....|+.++. ..+-..|-+..... . .+.+.-+++++--+++.++..... .=+..--++.+++-
T Consensus 549 llmE~Ls~vv~~dpef~as--~~skI~P~~i~lF~-k----~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisi 621 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPEFAAS--MESKICPLTINLFL-K----YSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISV 621 (1005)
T ss_pred HHHHHHHHHhccChhhhhh--hhcchhHHHHHHHH-H----hcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456788888899999864 36666777776554 2 122446888888888888774211 11233345666666
Q ss_pred hcccC----cccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHh-hcCCCHHHHHHHHHHHHHhhhh
Q psy15268 92 IKQHG----HSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLL-LRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 92 ldff~----~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~l-L~~~D~~vv~~ac~als~L~d~ 157 (256)
++-.. ...+- .|.-++.-.-|+.|||=+ .+..++|++.+. |+++|...+..+=-||.++...
T Consensus 622 l~~~~~~~~~~l~~----~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCA----IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HcCcccccCchhhH----HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 65433 44454 788888888899866654 799999999988 7788999999999999999865
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=88.74 E-value=21 Score=35.09 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=119.6
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c-hhh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G-SVF 80 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~-~Vl 80 (256)
.+++... ||-|||-|++=-+|..-+. .++.|..+.+|++|. ... ......|+.==....|=.+....+ . .+-
T Consensus 44 ~~~~v~~-EALKCL~N~lf~s~~aR~~-~~~~~~~~~l~~~Lk-~~~-~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 44 PDPDVSR-EALKCLCNALFLSPSARQI-FVDLGLAEKLCERLK-NYS-DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred CChHHHH-HHHHHHHHHHhCCHHHHHH-HHHcCcHHHHHHHHH-ccc-ccCCChhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4567777 9999999999988876654 569999999999998 321 010123443333344433333322 2 244
Q ss_pred hcCcHHHHHHhhcc----cCcc---------cchhhhhHHHHHHHHhcCCCCCC---C--CChHHHHHHHHHhh---cCC
Q psy15268 81 EAGGLASVLLFIKQ----HGHS---------VHKDTLHSAMAVVSRLCSKMEPQ---D--PQLPEAVEALSLLL---RHE 139 (256)
Q Consensus 81 ~~G~l~alL~~ldf----f~~~---------~qr~~l~~a~~~vsNlCr~~~~~---~--~~v~~~lP~L~~lL---~~~ 139 (256)
+++|+..+...+.- .... .+...+.-++-++=|+.-..+.. . ..+..++++|..++ ..+
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCC
Confidence 55777777777652 1111 23333444455555654332221 1 26777777777773 111
Q ss_pred --CHHHHHHHHHHHHHhhhhcc--------CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccc
Q psy15268 140 --DTHISDAALRCFASLSDRFT--------RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLA 209 (256)
Q Consensus 140 --D~~vv~~ac~als~L~d~~~--------~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (256)
-......+..++..+--... ..+...-.-.+..++.+|+++|...-...
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~--------------------- 258 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY--------------------- 258 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc---------------------
Confidence 13466677777776621100 01111112233357888888885421100
Q ss_pred cccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 210 TEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 210 ~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
....-.....+++.+|..+|+++ ..++..++.-
T Consensus 259 -~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~ 291 (446)
T PF10165_consen 259 -EALKLDELLTPLLTLLTRLARAA-REVRKYLRAR 291 (446)
T ss_pred -CcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHH
Confidence 01112467788999999999999 6666666654
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=88.11 E-value=12 Score=40.74 Aligned_cols=207 Identities=15% Similarity=0.207 Sum_probs=128.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCc-HHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchh
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGA-MKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSV 79 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gA-Vp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~V 79 (256)
+|.+.+|.... .||-|+--|..-.+..... - .+.. .|.|...+. .- ....+---|.-||-|.+.+.++.+
T Consensus 397 ~l~DphprVr~-AA~naigQ~stdl~p~iqk-~-~~e~l~~aL~~~ld-~~-----~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 397 GLNDPHPRVRY-AALNAIGQMSTDLQPEIQK-K-HHERLPPALIALLD-ST-----QNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred hcCCCCHHHHH-HHHHHHHhhhhhhcHHHHH-H-HHHhccHHHHHHhc-cc-----CchHHHHHHHHHHHHHHHhCcHHH
Confidence 46677788888 9999999999888777754 2 4444 457877665 32 255677778889999999999877
Q ss_pred hhc---CcHHHHHHhhcccCc-ccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCC-H---HHHHHHHHH
Q psy15268 80 FEA---GGLASVLLFIKQHGH-SVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHED-T---HISDAALRC 150 (256)
Q Consensus 80 l~~---G~l~alL~~ldff~~-~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D-~---~vv~~ac~a 150 (256)
+.- |-+...+..+-+.+. .+|- .++++++-.---...+- ++....+|.|.+.|+..| + .+.-...-|
T Consensus 468 l~pYLd~lm~~~l~~L~~~~~~~v~e----~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEc 543 (1075)
T KOG2171|consen 468 LEPYLDGLMEKKLLLLLQSSKPYVQE----QAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMEC 543 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHH----HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHH
Confidence 653 555556666665543 4444 66666554332221111 389999999999998654 3 344556677
Q ss_pred HHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHh
Q psy15268 151 FASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALC 230 (256)
Q Consensus 151 ls~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~ 230 (256)
++-+.-...+ ++.- +....+++++....+.. ........+-.+..-+.+|
T Consensus 544 isli~~AVGk--e~F~-----~~a~eliqll~~~~~~~-----------------------~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 544 LSLIARAVGK--EKFL-----PLAEELIQLLLELQGSD-----------------------QDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHhhh--hhhh-----HhHHHHHHHHHhhcccc-----------------------hhhccccHHHHHHHHHHHH
Confidence 7776644321 2222 45577777776432211 1122334455777777888
Q ss_pred cCCHHHHHHHHhcChHHHHh
Q psy15268 231 RGSPSITSDLLHSDLPDAIG 250 (256)
Q Consensus 231 ~~S~~it~~Ll~~~l~~~l~ 250 (256)
+.=-+--...+..=+|..++
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHH
Confidence 76555555555544444443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=28 Score=36.64 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 60 LAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 60 laEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
|+--|+-|+.+|-...|+.+-+.|-+.-+..+++.-...++. +|+.++..+|.
T Consensus 156 VRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~----nAl~aL~eI~~ 208 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVAS----NAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHH----HHHHHHHHHHH
Confidence 333333344444333333333334344444444433444444 55555555543
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=87.36 E-value=8.5 Score=37.08 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=112.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI 92 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l 92 (256)
.|.+.|-.+++..|.....+ .+.|.+..+++||. .| .+.+.+- .+....+.. ....- --...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f-~~~~G~~~li~rl~--~E------v~~~~~~----~~~~~~~~~--~~~~~---~~~~~ 64 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAF-RNLNGLDILIDRLQ--YE------VDFALEE----NKNEEAGSG--IPPEY---KESSV 64 (379)
T ss_pred HHHHHHHHHHhccHHHHHHH-HhCCCHHHHHHHHH--HH------HHHHHhc----ccccCCCCC--CCCCc---ccccc
Confidence 46788999999999988776 59999999999997 11 3333331 011110000 00000 00011
Q ss_pred cccCccc-chhhhhHHHHHHHHhcC-CCCCCC-C-C-h--HHHHHHHHHhhcCCC---HHHHHHHHHHHHHhhhhccCCC
Q psy15268 93 KQHGHSV-HKDTLHSAMAVVSRLCS-KMEPQD-P-Q-L--PEAVEALSLLLRHED---THISDAALRCFASLSDRFTRRG 162 (256)
Q Consensus 93 dff~~~~-qr~~l~~a~~~vsNlCr-~~~~~~-~-~-v--~~~lP~L~~lL~~~D---~~vv~~ac~als~L~d~~~~~~ 162 (256)
+.+.+.. |+.+||..+-.+..++. .-...+ - . + ...+..|..++.+.+ +.|...|...++.++-. +|
T Consensus 65 ~~~~i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---eP 141 (379)
T PF06025_consen 65 DGYSISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EP 141 (379)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CC
Confidence 1123333 45677777788888887 322233 1 2 2 356777888887764 77888888888887765 78
Q ss_pred CCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 163 VDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 163 ~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
.-+..|.++|+.+.+++-+...+- ..+...+..+-..|+.+|=...-+
T Consensus 142 T~~~~l~e~Gl~~~~L~~i~~~~i--------------------------~~s~e~l~~lP~~l~AicLN~~Gl 189 (379)
T PF06025_consen 142 TSFSILQEAGLIDAFLDAITAKGI--------------------------LPSSEVLTSLPNVLSAICLNNRGL 189 (379)
T ss_pred chhHHHHHcCChHHHHHHHhccCC--------------------------CCcHHHHHHHHHHHhHHhcCHHHH
Confidence 899999999999999999862221 134466667778888888665544
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=87.30 E-value=5.6 Score=40.09 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=91.8
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhcC
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEAG 83 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~G 83 (256)
++..+.-.|--.|+-+.. .|+-... --.-+.||.|++-+. . .+...+.+.|+++|-.|+.- ++..+++.|
T Consensus 69 ~~~~~~~LavsvL~~f~~-~~~~a~~-~~~~~~IP~Lle~l~-~-----~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCR-DPELASS-PQMVSRIPLLLEILS-S-----SSDLETVDDALQCLLAIASSPEGAKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcC-ChhhhcC-HHHHHHHHHHHHHHH-c-----CCchhHHHHHHHHHHHHHcCcHhHHHHHhcC
Confidence 456666455555665555 5554421 123378999999877 3 22358899999999999863 556899999
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC----C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD----P-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~----~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++.++...+.. .... +..|+-++.|+|.+..... . .+..+++.|++........-.-..|.-++++-..
T Consensus 141 ~v~~L~ei~~~-~~~~----~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQ----MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred CHHHHHHHHHh-Ccch----HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 99999998864 1222 2378888888888765322 2 5667788888776654444444556666666655
|
|
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=86.92 E-value=12 Score=39.61 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc--------cc-------
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE--------AG------- 77 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~--------~~------- 77 (256)
-|+|+|--+. +.-+- .|-.-+.|.|++-|.+ ++.+.|+---++.++-++-..+ +.
T Consensus 42 ~A~rgLKa~s----rkYR~-~Vga~Gmk~li~vL~~-----D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 42 DAVRGLKAFS----RKYRE-EVGAQGMKPLIQVLQR-----DYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred HHHHHHHHHH----HHHHH-HHHHcccHHHHHHHhh-----ccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 6888886654 45533 4456778999998882 3446677777787777763321 11
Q ss_pred -----hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC----ChHHHHHHHHHhhcCCCHHHHHHHH
Q psy15268 78 -----SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP----QLPEAVEALSLLLRHEDTHISDAAL 148 (256)
Q Consensus 78 -----~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~----~v~~~lP~L~~lL~~~D~~vv~~ac 148 (256)
.+.+.+-+..+|.|++.|..|+-| -++-.++++-+..|+.-. ..+..+..|..+|.-.-.-|..++.
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~VR~----~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFHVRL----YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchhhhh----HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 367789999999999999999999 999999999887766321 1233344455556655667888999
Q ss_pred HHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHH
Q psy15268 149 RCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLS 227 (256)
Q Consensus 149 ~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls 227 (256)
.-++-++.+ +..+|.++-. ++..+|..++..-||. -+.=.+..++.+|-
T Consensus 188 LlL~eL~k~----n~~IQKlVAFENaFerLfsIIeeEGg~--------------------------dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 188 LLLSELVKD----NSSIQKLVAFENAFERLFSIIEEEGGL--------------------------DGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHHcc----CchHHHHHHHHHHHHHHHHHHHhcCCC--------------------------CCcchHHHHHHHHH
Confidence 988888865 4679988866 6999999999876553 12235567777777
Q ss_pred HHhcCCHH
Q psy15268 228 ALCRGSPS 235 (256)
Q Consensus 228 ~l~~~S~~ 235 (256)
+|-+....
T Consensus 238 NLLK~N~S 245 (970)
T KOG0946|consen 238 NLLKNNIS 245 (970)
T ss_pred HHHhhCcc
Confidence 77665443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=6.1 Score=42.03 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=75.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.+++.-. .|+.+|..+.+..+ ..+.|.+.|. .++.++..-++.+|+.+...
T Consensus 661 L~D~d~~VR~-~Aa~aL~~l~~~~~-----------~~~~L~~~L~-------~~d~~VR~~A~~aL~~~~~~------- 714 (897)
T PRK13800 661 LGDGAAAVRR-AAAEGLRELVEVLP-----------PAPALRDHLG-------SPDPVVRAAALDVLRALRAG------- 714 (897)
T ss_pred HcCCCHHHHH-HHHHHHHHHHhccC-----------chHHHHHHhc-------CCCHHHHHHHHHHHHhhccC-------
Confidence 4556666666 88889887754332 2356777665 24778999999999887422
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
....++.+++.....+.+ .|++.+..+ .. .+.|..++..+|++|...+..+|.++.+.
T Consensus 715 --~~~~l~~~L~D~d~~VR~----~Av~aL~~~----~~--------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 715 --DAALFAAALGDPDHRVRI----EAVRALVSV----DD--------VESVAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred --CHHHHHHHhcCCCHHHHH----HHHHHHhcc----cC--------cHHHHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 233456666655555566 666666643 11 13456778899999999999999888754
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=86.17 E-value=2.3 Score=32.86 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=54.7
Q ss_pred HHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 86 ASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 86 ~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
.-.+.++...-..++- .++..++++.++++ .+ ..+..++..+...|.++|+-|-=.|..+|+-+++.+
T Consensus 6 ~~al~~L~dp~~PvRa----~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRA----HGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHccCCCcchHH----HHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 3455566555455555 78888999998876 23 378899999999999999999999999999999986
|
|
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=84.15 E-value=22 Score=38.14 Aligned_cols=197 Identities=15% Similarity=0.147 Sum_probs=123.9
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhhhc
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVFEA 82 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl~~ 82 (256)
.|.+.. -|-|++.++.+. .++..+-...+.++....+.+++.++.- +.|+.-+++-+.. .=+.-
T Consensus 463 ~P~Ll~-Ra~~~i~~fs~~-------~~~~~~~~~~fl~~~v~~l~~~~~~~~k-----i~a~~~~~~~~~~~vl~~~~p 529 (1005)
T KOG2274|consen 463 SPFLLL-RAFLTISKFSSS-------TVINPQLLQHFLNATVNALTMDVPPPVK-----ISAVRAFCGYCKVKVLLSLQP 529 (1005)
T ss_pred CHHHHH-HHHHHHHHHHhh-------hccchhHHHHHHHHHHHhhccCCCCchh-----HHHHHHHHhccCceeccccch
Confidence 455555 555555544443 2345555666666665455555566553 3455555555433 34456
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHh--hcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLL--LRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~l--L~~~D~~vv~~ac~als~L~d~~~ 159 (256)
+.+..++++.-.|+..+.- --|-+++-.|+-.|.... .-..+.|.+-++ -+++||.|.+-+--+|-.+++.-.
T Consensus 530 ~ild~L~qlas~~s~evl~----llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~ 605 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLV----LLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA 605 (1005)
T ss_pred HHHHHHHHHcccccHHHHH----HHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 8889999998776655544 788899999976544443 455566766666 367899999999999998888632
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH-HHHH
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP-SITS 238 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~-~it~ 238 (256)
......+ -++|.+++.|..++. ...+.-+...+.+|+++.|+-| .+..
T Consensus 606 ----~~g~m~e-~~iPslisil~~~~~--------------------------~~~~~l~~~aidvLttvvr~tp~pL~~ 654 (1005)
T KOG2274|consen 606 ----NYGPMQE-RLIPSLISVLQLNAD--------------------------KAPAGLCAIAIDVLTTVLRNTPSPLPN 654 (1005)
T ss_pred ----hhcchHH-HHHHHHHHHHcCccc--------------------------ccCchhhHHHHHHHHHHHhcCCCCccH
Confidence 2333332 468999999975432 2334566788888887777644 3555
Q ss_pred HHHhcChHHHHh
Q psy15268 239 DLLHSDLPDAIG 250 (256)
Q Consensus 239 ~Ll~~~l~~~l~ 250 (256)
.++...+|-.++
T Consensus 655 ~l~~~~FpaVak 666 (1005)
T KOG2274|consen 655 LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHhHHhHh
Confidence 555555554443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=83.92 E-value=8.4 Score=37.88 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhhc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFEA 82 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~~ 82 (256)
.+.-++. .|++.||.+++..++... ..+.+.+.+.|. .. +.+....+....|+.+|..+-+. ++....++
T Consensus 113 ~d~~i~~-~a~~iLt~l~~~~~~~~~-----~~~l~~~~~~l~-~~-l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 113 QDQFIVH-MSFSILAKLACFGLAKME-----GSDLDYYFNWLK-EQ-LNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred CchhHHH-HHHHHHHHHHhcCccccc-----hhHHHHHHHHHH-HH-hhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 3334455 999999999987665322 224444444332 11 11111345555566666555443 44567789
Q ss_pred CcHHHHHHhhcccCcccch--hhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHK--DTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHE-DTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr--~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~-D~~vv~~ac~als~L~d~~~ 159 (256)
+|+..+...++.-....|- .++ -++|.+|--....+. ..=.+++|.|.+++... -.+|+--++.+|-.+.+.-.
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~l-l~lWlLSF~~~~~~~--~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSI-FCIWLLTFNPHAAEV--LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHH-HHHHHHhccHHHHHh--hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999754333332 222 478999855432211 12257899999998755 45677777778888887431
Q ss_pred C---CCCCccchhccccHHHHHHHh
Q psy15268 160 R---RGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 160 ~---~~~~i~~l~~~glv~~Lv~LL 181 (256)
. .......+++.|+.+ +++.|
T Consensus 262 ~~~~~~~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 262 DREVKKTAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred ccchhhhHHHHHHHcChHH-HHHHH
Confidence 1 123445667777655 33444
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=83.85 E-value=12 Score=38.05 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=101.2
Q ss_pred HHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccc---------------
Q psy15268 15 ARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAG--------------- 77 (256)
Q Consensus 15 araLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~--------------- 77 (256)
.-.|-.+++.-|.|-.. -....||.+.+.|- -+..++++|+..+|-+++.- .++
T Consensus 275 lellg~m~~~ap~qLs~--~lp~iiP~lsevl~-------DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 275 LELLGAMADCAPKQLSL--CLPDLIPVLSEVLW-------DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADP 345 (569)
T ss_pred HHHHHHHHHhchHHHHH--HHhHhhHHHHHHHc-------cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCc
Confidence 33555677777888743 47889999999887 34689999999999998552 221
Q ss_pred --h---------------hhhcCcHHHHHHhhc----ccCcccchhhhhHHHHHHHHhcCCC-CCCC--CChHHHHHHHH
Q psy15268 78 --S---------------VFEAGGLASVLLFIK----QHGHSVHKDTLHSAMAVVSRLCSKM-EPQD--PQLPEAVEALS 133 (256)
Q Consensus 78 --~---------------Vl~~G~l~alL~~ld----ff~~~~qr~~l~~a~~~vsNlCr~~-~~~~--~~v~~~lP~L~ 133 (256)
. .+.+-.+.-+...+. .-+....| .+.-++=|+|+-+ +|.+ +++...+|.|.
T Consensus 346 ~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr----~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 346 SCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKR----KTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred ccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhh----hHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 0 111112222222221 11233344 8888999999988 5555 48999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 134 LLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 134 ~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
..+.-.+|++.+-+.+|+.-+.++..+.. ..+++|.+.+.+.
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~-------f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVS-------FDDLIPELSETLT 463 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhc-------ccccccHHHHhhc
Confidence 99888899999999999988887753221 1567777777774
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=83.73 E-value=22 Score=30.57 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHHHHHHhccC--chhhhHHH-HhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch--h
Q psy15268 5 TAPENVLEVTARAMTYYLDVS--AECTRRIV-AIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS--V 79 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~--p~~t~~iv-v~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~--V 79 (256)
.|=+... +|-.-|..++.+. .+....++ .-...++.++..+. . . .--|+-.|+.+++.++...+.. -
T Consensus 19 ~~W~~r~-~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d-----~-Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 19 SDWEERV-EALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-D-----L-RSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp SSHHHHH-HHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--H-----H----HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCHHHHH-HHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-h-----h-HHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 3444555 7777777777766 22222211 01134445555444 1 1 2347888888998888775543 1
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHH-HHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEA-VEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~-lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+-...+++++.-+......+.. .|.-++-.+|.+.+ ....+ ++.+.....|..+.+...++.++..+...+
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~----~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIRE----AANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHH----HHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccccHHHHH----HHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 2233445555555432222233 66677778887764 12344 788888899999999999999999999886
Q ss_pred cCCCCCccchh-ccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 159 TRRGVDPAPLA-QHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 159 ~~~~~~i~~l~-~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
..+...++.-. -..+++.+.+.+... .+.+=...-+++..+.+.-|+-+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~------------------------------~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDA------------------------------DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-------------------------------HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCC------------------------------CHHHHHHHHHHHHHHHHHCCHhh
Confidence 42122222211 023555555555321 12333355667777777888888
Q ss_pred HHHHhcChHHHHhhhh
Q psy15268 238 SDLLHSDLPDAIGCPR 253 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~~ 253 (256)
..++ +.++..+++.|
T Consensus 213 ~~~~-~~l~~~~qk~l 227 (228)
T PF12348_consen 213 ESIL-SMLDPNIQKYL 227 (228)
T ss_dssp ----------------
T ss_pred ccch-hcchhcccccC
Confidence 8877 55777766654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=82.87 E-value=5.5 Score=39.05 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=62.1
Q ss_pred cCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCc
Q psy15268 137 RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASS 216 (256)
Q Consensus 137 ~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 216 (256)
...|.++...|+.|++.+. |.....+ +..++.|..+.+++.|..... ...+.
T Consensus 42 ~~~~~~v~~EALKCL~N~l--f~s~~aR-~~~~~~~~~~~l~~~Lk~~~~-------------------------~~~~~ 93 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNAL--FLSPSAR-QIFVDLGLAEKLCERLKNYSD-------------------------SSQPS 93 (446)
T ss_pred cCCChHHHHHHHHHHHHHH--hCCHHHH-HHHHHcCcHHHHHHHHHcccc-------------------------cCCCh
Confidence 4457888888888888877 3222223 677788999999999975321 11233
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhcC-hHHHHhhhh
Q psy15268 217 GSVSTIVSLLSALCRGSPSITSDLLHSD-LPDAIGCPR 253 (256)
Q Consensus 217 ~~~~~~l~~Ls~l~~~S~~it~~Ll~~~-l~~~l~~~~ 253 (256)
...--..|+|-.++...+..-.+|.+.. +.+.|-..|
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L 131 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEAL 131 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHH
Confidence 4445688999999999999999998875 555554433
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG2122|consensus | Back alignment and domain information |
|---|
Probab=82.75 E-value=1.6 Score=48.69 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=95.1
Q ss_pred HHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc------cccchhhhcCcHHHHH
Q psy15268 16 RAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT------REAGSVFEAGGLASVL 89 (256)
Q Consensus 16 raLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~------d~~~~Vl~~G~l~alL 89 (256)
-||-|+.--..+--..|-..+||+..|+..|.-.- .+..--+-|-+=-.|.|+|. +|+....+++.|.-+|
T Consensus 460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~---qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LL 536 (2195)
T KOG2122|consen 460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG---QSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLL 536 (2195)
T ss_pred HHHhhhhhcccccchhhhcccchHHHHHhhccccC---CcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHH
Confidence 35666666666666667778999999999886111 12234677777778888765 3445677899999999
Q ss_pred HhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CCh--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 90 LFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQL--PEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 90 ~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v--~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+.|.-.+..+-- |+.-++-||--+ .|.| .++ ..++|.|.+|+++..+.|.+.+.-||-.|..
T Consensus 537 Q~LKS~SLTiVS----NaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 537 QHLKSHSLTIVS----NACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHhhhcceEEee----cchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 999865554444 555555566544 3444 243 4578999999999999999999999999884
|
|
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=82.06 E-value=11 Score=39.81 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=87.4
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---- 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---- 77 (256)
|...||-.++ .+|++.++++.-. +.+ ..+++|+.+|. + ..++.+-.++.+--||-..|.
T Consensus 296 l~S~n~sVVm-A~aql~y~lAP~~--~~~------~i~kaLvrLLr-s-------~~~vqyvvL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 296 LQSRNPSVVM-AVAQLFYHLAPKN--QVT------KIAKALVRLLR-S-------NREVQYVVLQNIATISIKRPTLFEP 358 (968)
T ss_pred HhcCCcHHHH-HHHhHHHhhCCHH--HHH------HHHHHHHHHHh-c-------CCcchhhhHHHHHHHHhcchhhhhh
Confidence 4456888888 9999999988633 332 33589998666 4 234444444444444443221
Q ss_pred ------------------------hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHH
Q psy15268 78 ------------------------SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALS 133 (256)
Q Consensus 78 ------------------------~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~ 133 (256)
.+..++.+..+|.-+..+=....|++.-.|+-++.+|-.+.-. .-..||-.|.
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s---v~~tCL~gLv 435 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS---VTDTCLNGLV 435 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc---hhhHHHHHHH
Confidence 1233444444444333332233444445566666666554322 3346777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 134 LLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 134 ~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.++.+.|..||..+..-+-+|... ++.+.. .++.+|.+++.
T Consensus 436 ~Llsshde~Vv~eaV~vIk~Llq~---~p~~h~-----~ii~~La~lld 476 (968)
T KOG1060|consen 436 QLLSSHDELVVAEAVVVIKRLLQK---DPAEHL-----EILFQLARLLD 476 (968)
T ss_pred HHHhcccchhHHHHHHHHHHHHhh---ChHHHH-----HHHHHHHHHhh
Confidence 777777888888888877777765 222211 25566666664
|
|
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=81.09 E-value=8.5 Score=40.30 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccC
Q psy15268 106 SAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAA 185 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~ 185 (256)
+|+-++-..|-+- ++.++++||-|..-|.-.|+.|+..|..-++-|+.+ +|. .-. .+-|-+-+||..
T Consensus 163 kAIl~lykvFLkY---PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK---nPk---nyL--~LAP~ffklltt-- 229 (877)
T KOG1059|consen 163 KAILLLYKVFLKY---PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK---NPQ---NYL--QLAPLFYKLLVT-- 229 (877)
T ss_pred HHHHHHHHHHHhh---hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh---CCc---ccc--cccHHHHHHHhc--
Confidence 5666666666442 348999999999999999999999999999999976 333 222 355778888842
Q ss_pred CCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC---hHHHHhhhhcc
Q psy15268 186 GSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD---LPDAIGCPRIY 255 (256)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~---l~~~l~~~~~~ 255 (256)
+.+.=....+|++.+.|.---|.+-+.|++.= +-.|.-..|+|
T Consensus 230 ---------------------------SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlY 275 (877)
T KOG1059|consen 230 ---------------------------SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLY 275 (877)
T ss_pred ---------------------------cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHH
Confidence 12335778999999999999999999998632 44444444444
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=81.08 E-value=2.2 Score=33.26 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 106 SAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 106 ~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
-+++.++.++...+..- .++++++|.+-..+..+|.+|.-.||-++..++..++ ++.+. .-..+.+.|.+++.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~--~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILP--YFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHc
Confidence 67888888888775554 4899999999999999999999999999999997652 22222 11367777777775
|
|
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=80.43 E-value=5.9 Score=41.69 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHH
Q psy15268 214 ASSGSVSTIVSLLSALCRGSPSITS 238 (256)
Q Consensus 214 ~s~~~~~~~l~~Ls~l~~~S~~it~ 238 (256)
.-|-....++|+|..|-++.++.+.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd 270 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASD 270 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHH
Confidence 3466788999999999999877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-06
Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 25/233 (10%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
+ + PE + A A+T ++ T+ +V A+ L S ++
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY-------TGSVEV 189
Query: 61 AEQCIKVLELICTREAG---SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK 117
EQ I L + V + + +L S + +A +S LC
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN----SNKPSLIRTATWTLSNLCRG 245
Query: 118 MEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLAS 175
+PQ + +A+ L+ L+ DT A + LSD P Q +
Sbjct: 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD-------GPQEAIQAVIDV 298
Query: 176 ELLIRLSNAAGSNPLNTSLGGANVSTASASGT-LATEAKASSGSVSTIVSLLS 227
+ RL +G L T+ ++G + + LLS
Sbjct: 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 24/235 (10%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
L T + +A A+T ++E T+ +V GA+ A S L+ +
Sbjct: 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA-------SPHAHI 159
Query: 61 AEQCIKVLELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDT-LHSAMAVVSRLCS 116
+EQ + L I + V + G + +L + S L + +S LC
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219
Query: 117 KMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLA 174
P P + + + L LL H D + + + L+D R + + G+
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI---EMVVKKGVV 276
Query: 175 SEL--LIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLS 227
+L L+ + P ++G N+ T + T +G+++ SLL+
Sbjct: 277 PQLVKLLGATELPIVTPALRAIG--NIVTGTDEQTQKV---IDAGALAVFPSLLT 326
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-05
Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 54/214 (25%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAEC-----TRRIVAIDGAMKAICSRLSLGAGIASRT 56
L + ++S C TR D A + +SL + T
Sbjct: 250 LLNVQNAKAWN--------AFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 57 SKDLAEQCIKVLELICT---REA--GSVFEAGGLASVLLFIKQHGHS-------VHKDTL 104
++ +K L+ RE + +A + + G + V+ D L
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCDKL 355
Query: 105 HSAMAV-VSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAAL---------RCFASL 154
+ + ++ L EP + + + + LS+ HI L +
Sbjct: 356 TTIIESSLNVL----EPAEYR--KMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 155 SDRFTRRGV---DPAPLAQ--HGLASELLIRLSN 183
++ + + P + EL ++L N
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 1e-04
Identities = 31/243 (12%), Positives = 71/243 (29%), Gaps = 87/243 (35%)
Query: 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIK 66
+ L++ R L + + V IDG + G+G +T +A
Sbjct: 134 LQPYLKL--RQALLELRPA-----KNVLIDG-VL--------GSG---KTW--VALDVCL 172
Query: 67 VLELICTREAGSVF--EAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ 124
++ C + +F + ++ + + ++ +L +++P
Sbjct: 173 SYKVQCKMDFK-IFWLNLK----------------NCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 125 LPEAVEAL----------------------SLL-LRH-EDTHISDA-ALRC-------FA 152
+ + LL L + ++ +A L C F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 153 SLSDRFTRRGVDPAPLAQH--GL----ASELLIRLSN---------AAGSNPLNTSLGGA 197
++D + L H L LL++ + +NP S+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 198 NVS 200
++
Sbjct: 336 SIR 338
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 3e-04
Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 16/179 (8%)
Query: 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCI-- 65
E V RA+ Y + A K + S L + + D+ +
Sbjct: 89 EKVTIKALRALGYLVKD---VPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL 145
Query: 66 ----KVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
V I L + ++ + ++ +
Sbjct: 146 EDSKLVRTYINELVVSPDLYTKVAGFCLFL-----NMLNSSADSGHLTLILDEIPSLLQN 200
Query: 122 D--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELL 178
D + A++ L L L + + D R P + S+L+
Sbjct: 201 DNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLI 259
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.96 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.96 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.9 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.88 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.85 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.85 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.84 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.84 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.83 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.8 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.78 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.77 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.77 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.75 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.74 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.73 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.71 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.7 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.69 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.69 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.69 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.67 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.67 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.67 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.66 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.66 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.65 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.64 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.64 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.62 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.61 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.58 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.53 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.35 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.35 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.13 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.97 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.92 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.6 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.57 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.38 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.33 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.32 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.31 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.3 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.25 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.22 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.11 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.05 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.02 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.01 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.0 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 97.93 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.92 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.88 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.75 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.73 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.67 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.62 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.6 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.57 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 97.52 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.52 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.48 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.28 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.08 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 96.97 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 96.96 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.55 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 96.07 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 95.83 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 95.75 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 95.73 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.11 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.89 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.82 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 94.74 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 94.55 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.35 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 94.22 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 94.05 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 93.99 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 93.62 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 92.74 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 90.81 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 90.66 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 88.59 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 88.42 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 87.86 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 87.54 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.95 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 86.59 |
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=236.41 Aligned_cols=210 Identities=19% Similarity=0.247 Sum_probs=178.4
Q ss_pred CCC-CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---
Q psy15268 1 MLD-DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--- 76 (256)
Q Consensus 1 ~L~-~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--- 76 (256)
||+ .++|++|+ +|||||+||+++++++++. +++.|+||.|+++|. +++.++.|||+|+|+||+++.+
T Consensus 108 lL~~~~~~~lq~-~Aa~aL~nias~~~e~~~~-vv~~GaIp~Lv~lL~-------s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 108 FLGKTDCSPIQF-ESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLA-------SPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp HTTCTTCHHHHH-HHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHHCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 465 45678888 9999999999999999976 679999999999776 4589999999999999999865
Q ss_pred chhhhcCcHHHHHHhhcccCccc-chhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSV-HKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFAS 153 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~-qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~ 153 (256)
+.++++|++.+++.++....... ....+++++|+++|+|+++.+... .+..++|.|.++|+++|+++..+||||+++
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 57999999999999998654332 224556999999999999866664 689999999999999999999999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS 233 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S 233 (256)
|+++ .+++.+.+++.|+++.|+++|.+. +.......++.|..++.++
T Consensus 259 L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~------------------------------~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 259 LTDG---PNERIEMVVKKGVVPQLVKLLGAT------------------------------ELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp HTSS---CHHHHHHHHTTTCHHHHHHHHTCS------------------------------CHHHHHHHHHHHHHHTTSC
T ss_pred Hhhc---hhhhHHHHHhcccchhhhhhhcCC------------------------------ChhhhhHHHHHHHHhhcCC
Confidence 9987 457889999999999999999632 2356778999999999999
Q ss_pred HHHHHHHHhcChHHHHhhh
Q psy15268 234 PSITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 234 ~~it~~Ll~~~l~~~l~~~ 252 (256)
+..+..+++.+....+.++
T Consensus 306 ~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 306 DEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp HHHHHHHHHTTGGGGCC-C
T ss_pred HHHHHHHhhccchHHHHHH
Confidence 9999999998855555443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=232.23 Aligned_cols=208 Identities=18% Similarity=0.237 Sum_probs=178.1
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhh
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVF 80 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl 80 (256)
.++|+.++ +|||||+||++++++++.. +++.|+||.|+++|. +++.++.|||+|||+||+++++ +.|+
T Consensus 131 ~~~~~~q~-~Aa~aL~nia~~~~~~~~~-vv~~Gaip~Lv~LL~-------s~~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 131 TDCSPIQF-ESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLA-------SPHAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp TTCHHHHH-HHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHcCCHHHHHH-HHHCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 45678888 9999999999999999966 679999999998665 4589999999999999999865 5799
Q ss_pred hcCcHHHHHHhhcccCccc-chhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 81 EAGGLASVLLFIKQHGHSV-HKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 81 ~~G~l~alL~~ldff~~~~-qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++|++.+++.++....... ....+++++|+++|+|+++++... .+..++|.|.++|+++|+++..+||||++|++++
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 9999999999998654332 234566999999999999866664 7899999999999999999999999999999987
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
.++..+.+++.|+++.|+++|.+. ++......++.|..++.+++..+
T Consensus 282 ---~~~~~~~v~~~g~i~~Lv~lL~~~------------------------------~~~v~~~a~~aL~nl~~~~~~~~ 328 (529)
T 3tpo_A 282 ---PNERIEMVVKKGVVPQLVKLLGAT------------------------------ELPIVTPALRAIGNIVTGTDEQT 328 (529)
T ss_dssp ---CHHHHHHHHTTTCHHHHHHHHTCS------------------------------CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ---hhhhHHHHHhccchHHHHHHhcCC------------------------------ChhHHHHHHHHHHHHHccchHHH
Confidence 457889999999999999999631 23566789999999999999999
Q ss_pred HHHHhcChHHHHhhhh
Q psy15268 238 SDLLHSDLPDAIGCPR 253 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~~ 253 (256)
..+++.+....+.++|
T Consensus 329 ~~i~~~g~l~~L~~LL 344 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLL 344 (529)
T ss_dssp HHHHHTTGGGGHHHHT
T ss_pred HHHhhcccHHHHHHHH
Confidence 9999998655555544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=195.99 Aligned_cols=206 Identities=19% Similarity=0.220 Sum_probs=174.6
Q ss_pred CCCCC-chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 2 LDDTA-PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 2 L~~~~-p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
|+..+ ++.+. +|+|||+|++++.++.... ++..|+||.|++.|. .++.++.|+|+|+|++|+++.+ .
T Consensus 126 L~~~~~~~v~~-~A~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~lL~-------~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 126 LTREDFPQLQF-EAAWALTNIASGTSENTKV-VIDHGAVPIFVKLLG-------SSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp HTCTTCHHHHH-HHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCCCHHHHH-HHHHHHHHHhCCCHHHHHH-HHhCCcHHHHHHHhc-------CCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 34444 77777 9999999999999999965 679999999999776 3478999999999999998865 4
Q ss_pred hhhhcCcHHHHHHhh-cccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 78 SVFEAGGLASVLLFI-KQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 78 ~Vl~~G~l~alL~~l-dff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.+++.|++.+++.++ +.....+++ +|+|+++|+|++.+.... .+..++|.|..+|+++|+++...|||++.+++
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~----~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLR----NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHH----HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHH----HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999 444555666 999999999999744443 78999999999999999999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
++ .++.++.+++.|+++.|+++|.+. ++......++.|+.++.+++.
T Consensus 273 ~~---~~~~~~~~~~~g~v~~Lv~lL~~~------------------------------~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 273 DG---TNDKIQAVIEAGVCPRLVELLLHP------------------------------SPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp SS---CHHHHHHHHHTTCHHHHHHHTTCS------------------------------CHHHHHHHHHHHHHHTTSCHH
T ss_pred cC---CHHHHHHHHHcCHHHHHHHHHcCC------------------------------ChhHHHHHHHHHHHHHcCCHH
Confidence 87 456788999999999999999631 235677899999999999999
Q ss_pred HHHHHHhcChHHHHhhhh
Q psy15268 236 ITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 236 it~~Ll~~~l~~~l~~~~ 253 (256)
....+++.++...|.++|
T Consensus 320 ~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 320 QTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp HHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 999999988655655544
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=185.71 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=174.8
Q ss_pred CCCCC-CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---
Q psy15268 1 MLDDT-APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--- 76 (256)
Q Consensus 1 ~L~~~-~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--- 76 (256)
+|+.. +++.+. +|+|+|+|++++.++.... ++..|+||.|++.|. .++.++.|+|+|+|++|+++.+
T Consensus 138 ~L~~~~~~~v~~-~A~~~L~~l~~~~~~~~~~-~~~~g~i~~Lv~lL~-------~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 138 FMRENQPEMLQL-EAAWALTNIASGTSAQTKV-VVDADAVPLFIQLLY-------TGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTSTTSCHHHHH-HHHHHHHHHTTSCHHHHHH-HHHTTCHHHHHHHHH-------HCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCCCHHHHH-HHHHHHHHHhCCCHHHHHH-HHHCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHhCCCccch
Confidence 45554 778888 9999999999999999865 669999999999887 2378999999999999998754
Q ss_pred chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P-QLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
..+++.|++.+++.++......+++ .|+|+++|+|++..+.. . .+..++|.|..+|.++|+++...|||++.+|
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~----~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIR----TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYL 284 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHH----HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHH----HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5788999999999999875555666 99999999999874443 3 6789999999999999999999999999999
Q ss_pred hhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH
Q psy15268 155 SDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP 234 (256)
Q Consensus 155 ~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~ 234 (256)
+++ .++..+.+++.|+++.|+++|.+. ++......++.|+.++.+++
T Consensus 285 ~~~---~~~~~~~~~~~~~v~~Lv~lL~~~------------------------------~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 285 SDG---PQEAIQAVIDVRIPKRLVELLSHE------------------------------STLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HSS---CHHHHHHHHHTTCHHHHHHGGGCS------------------------------CHHHHHHHHHHHHHHTTSCH
T ss_pred hCC---CHHHHHHHHhcCcHHHHHHHHCCC------------------------------ChhhHHHHHHHHHHHHcCCH
Confidence 986 346788899999999999999631 23566788999999999999
Q ss_pred HHHHHHHhcChHHHHhhhh
Q psy15268 235 SITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 235 ~it~~Ll~~~l~~~l~~~~ 253 (256)
...+.+++.++...+..+|
T Consensus 332 ~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHcchHHHHHHHH
Confidence 9999999888555555544
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-22 Score=189.69 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=154.0
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcH----------HHHHHHhhcccCCCCCCcHH-----HHH-------HH
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAM----------KAICSRLSLGAGIASRTSKD-----LAE-------QC 64 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAV----------p~L~~~L~~~i~~~~~~~~D-----laE-------Qa 64 (256)
++.++ +|+||||||+++.|+++.. +.+.|++ |.+++.|. .. ....| +.| ||
T Consensus 96 ~~~~~-~a~~al~ni~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~qA 168 (458)
T 3nmz_A 96 KEARA-RASAALHNIIHSQPDDKRG-RREIRVLHLLEQIRAYCETCWEWQE-AH----EPGMDQDKNPMPAPVEHQICPA 168 (458)
T ss_dssp HHHHH-HHHHHHHHHHHHSCSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-TT----SSSSCCCSCC--CCCTTTTHHH
T ss_pred HHHHH-HHHHHHHHHHccCcchhHH-HHHHHHHHHHHHhhhhhHHHHHHHH-hh----ccccccccCCccchhhHHHHHH
Confidence 57777 9999999999999999954 7799999 77666555 21 11234 777 99
Q ss_pred HHHHHHHhcc--ccchhhhcCcHHHHHHhhcc-----------cCcccchhhhhHHHHHHHHhcCCCCCCCCC---hHHH
Q psy15268 65 IKVLELICTR--EAGSVFEAGGLASVLLFIKQ-----------HGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ---LPEA 128 (256)
Q Consensus 65 l~aLe~Is~d--~~~~Vl~~G~l~alL~~ldf-----------f~~~~qr~~l~~a~~~vsNlCr~~~~~~~~---v~~~ 128 (256)
+|+|+|||.+ +++.+++.|++.+++.++.. ....+|+ +|.|++.|+|++.++.... ...+
T Consensus 169 v~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~----~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 169 VCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRR----YAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHH----HHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHH----HHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 9999999987 44689999999999999941 1133466 9999999999986533333 3567
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCcc
Q psy15268 129 VEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTL 208 (256)
Q Consensus 129 lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (256)
+|.|.++|.++|+++.++|||++.+|+.+- +++.-+.+++.|.++.|+++|...+
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~--~~~~k~~I~~~GaI~~LV~lLl~s~----------------------- 299 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALEVK----------------------- 299 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSC--CHHHHHHHHHTTHHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--CHHHHHHHHHcCCHHHHHHHHhcCC-----------------------
Confidence 999999999999999999999999998751 2345688899999999999875321
Q ss_pred ccccccCcchHHHHHHHHHHHhcCCHHHHHHHH-hcChHHHHhhhh
Q psy15268 209 ATEAKASSGSVSTIVSLLSALCRGSPSITSDLL-HSDLPDAIGCPR 253 (256)
Q Consensus 209 ~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll-~~~l~~~l~~~~ 253 (256)
+.......++.|.+|+.++++.-..+. ..+.-..|.+.|
T Consensus 300 ------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 300 ------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp ------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 234566788899999997766555555 555444444433
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=171.07 Aligned_cols=205 Identities=20% Similarity=0.197 Sum_probs=171.8
Q ss_pred CCC-CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 3 DDT-APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 3 ~~~-~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
+.. +++.+. .|+|+|+|++.+.++..+. ++..|++|.|++.|. .++.++.|+|+|+|++|+.+.+ ..
T Consensus 74 ~~~~~~~v~~-~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~-------~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 74 KRKENCTLQF-ESAWVLTNIASGNSLQTRI-VIQAGAVPIFIELLS-------SEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp TCTTCHHHHH-HHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHhCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 344 778888 9999999999999999866 568999999999876 3478999999999999999754 46
Q ss_pred hhhcCcHHHHHHhhcc-cCcccchhhhhHHHHHHHHhcCCC-CCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 79 VFEAGGLASVLLFIKQ-HGHSVHKDTLHSAMAVVSRLCSKM-EPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 79 Vl~~G~l~alL~~ldf-f~~~~qr~~l~~a~~~vsNlCr~~-~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
+++.|++..++.++.. ....+++ .|+|++.|+|++. +.... .+.+++|.|.+++.++|+++...++|++.+++
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~----~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTR----NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHH----HHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHH----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 8899999999999984 4556666 9999999999987 33333 67999999999999999999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
+. .++..+.+++.|+++.|+++|.+. .+......++.|+.++.+++.
T Consensus 221 ~~---~~~~~~~~~~~~~i~~L~~ll~~~------------------------------~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 221 DG---PNDKIQAVIDAGVCRRLVELLMHN------------------------------DYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp SS---SHHHHHHHHHTTTHHHHHHHTTCS------------------------------CHHHHHHHHHHHHHHTTSCHH
T ss_pred CC---CcHHHHHHHHcCcHHHHHHHHCCC------------------------------chhHHHHHHHHHHHHhhCChH
Confidence 86 345678888999999999999631 235667899999999999999
Q ss_pred HHHHHHhcChHHHHhhhh
Q psy15268 236 ITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 236 it~~Ll~~~l~~~l~~~~ 253 (256)
..+.+++.++...+.+.|
T Consensus 268 ~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHCccHHHHHHHH
Confidence 999888888555555544
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=160.42 Aligned_cols=205 Identities=17% Similarity=0.222 Sum_probs=170.7
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chh
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSV 79 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~V 79 (256)
...+++.+. .|+|+|.++++..++.... +++.|+||.|++.|. .++.++.++++|+|++|+.+.+ ..+
T Consensus 22 ~s~~~~~~~-~a~~~L~~~l~~~~~~~~~-~~~~g~i~~L~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 22 NSDDMQEQL-SATRKFSQILSDGNEQIQA-VIDAGALPALVQLLS-------SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HSSCSSHHH-HHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHGGG-------CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHHHcCCCchHHH-HHHcCcHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 356788888 9999999999986666654 679999999999887 3368999999999999998544 578
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCC-CC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ-DP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~-~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++.|+++.++.+++.....+++ .|+|++.|+|.+.+.. .. .-..++|.|.++|+++|+++.+.|+|++.+++.+
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQ----EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHcCCCHHHHH----HHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999876666677 9999999999874332 22 2346899999999999999999999999999976
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+++..+.+++.|+++.|+++|.+. ++......+..|..+|.++++..
T Consensus 169 ---~~~~~~~~~~~~~i~~L~~ll~~~------------------------------~~~v~~~a~~~L~~l~~~~~~~~ 215 (252)
T 4db8_A 169 ---GNEQIQAVIDAGALPALVQLLSSP------------------------------NEQILQEALWALSNIASGGNEQK 215 (252)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHGGGCS------------------------------SHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ---ChHHHHHHHHCCCHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHHhcCCHHHH
Confidence 356778889999999999999631 23567789999999999999999
Q ss_pred HHHHhcChHHHHhhhh
Q psy15268 238 SDLLHSDLPDAIGCPR 253 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~~ 253 (256)
..+++.++.+.|.+++
T Consensus 216 ~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHTTHHHHHHTTT
T ss_pred HHHHHCCcHHHHHHHh
Confidence 9999998666666554
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=168.36 Aligned_cols=185 Identities=12% Similarity=0.107 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHH-HhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcC
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICS-RLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAG 83 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~-~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G 83 (256)
+... .|...|.++++.. +.... ++..|++|.|++ .|. ++..++.|+|+|+|++|+++.+ ..|++.|
T Consensus 55 e~k~-~Al~~L~~lv~~~-dna~~-~~~~G~l~~Lv~~lL~-------s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g 124 (296)
T 1xqr_A 55 QERE-GALELLADLCENM-DNAAD-FCQLSGMHLLVGRYLE-------AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG 124 (296)
T ss_dssp HHHH-HHHHHHHHHHTSH-HHHHH-HHHTTHHHHHHHTTTT-------CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHhCh-hhHHH-HHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 3444 8889999999844 44545 458999999999 554 4588999999999999999866 4799999
Q ss_pred cHHHHHHhhcc-cCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccC
Q psy15268 84 GLASVLLFIKQ-HGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTR 160 (256)
Q Consensus 84 ~l~alL~~ldf-f~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~ 160 (256)
++++++.+++. ....+++ +|+|+++|+||+.++... .-...+|.|..+|++.|+++...|||++++++++
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~----~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~--- 197 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRV----KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG--- 197 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHH----HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHccCCCHHHHH----HHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---
Confidence 99999999985 3455667 999999999998755332 2247999999999999999999999999999998
Q ss_pred CCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 161 RGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 161 ~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
+++..+.+++.|+++.|++||.+. .+......++.|.+++++.+.....
T Consensus 198 ~~~~~~~vv~~g~i~~Lv~LL~~~------------------------------d~~v~~~al~aL~~l~~~~~~~~~~ 246 (296)
T 1xqr_A 198 HPEHKGTLCSMGMVQQLVALVRTE------------------------------HSPFHEHVLGALCSLVTDFPQGVRE 246 (296)
T ss_dssp CGGGHHHHHHTTHHHHHHHHHTSC------------------------------CSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHcCC------------------------------ChhHHHHHHHHHHHHHhCChhHHHH
Confidence 568899999999999999999631 2367778999999999998876554
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=154.92 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=171.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|...+++.+. .|+|+|.|+....++.... +++.|+||.|++.|. .++.++.++++|+|++++.+.+ ..
T Consensus 11 L~~~~~~~~~-~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 11 LTSTDSETQK-EAARDLAEIASGPASAIKA-IVDAGGVEVLVKLLT-------STDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp TTCSCHHHHH-HHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHhcCCcHHHHH-HHHCCCHHHHHHHHh-------CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5667788888 9999999999999977765 569999999999776 3368999999999999998744 47
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|++..++.+++.....+++ .|.|++.|+|.+.+.... .-..++|.|.++|.++|+++...++|++.+++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQK----EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHH----HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999876666677 999999999975322212 223589999999999999999999999999997
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
+ +++..+.+++.|+++.|+++|.+. ++......+..|..+|.++++.
T Consensus 158 ~---~~~~~~~~~~~~~i~~L~~ll~~~------------------------------~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 158 G---PDEAIKAIVDAGGVEVLVKLLTST------------------------------DSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHHTTCS------------------------------CHHHHHHHHHHHHHHTTSBHHH
T ss_pred C---CHHHHHHHHHCcCHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHHHcCCHHH
Confidence 6 345668899999999999999631 2356678999999999999999
Q ss_pred HHHHHhcChHHHHhhhh
Q psy15268 237 TSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 237 t~~Ll~~~l~~~l~~~~ 253 (256)
.+.+.+.++...+.+++
T Consensus 205 ~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHTTHHHHHHHGG
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 99999999666666554
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=149.85 Aligned_cols=166 Identities=18% Similarity=0.229 Sum_probs=140.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+++.+. .|+|+|.|+..+.++.... +++.|+||.|++.|. .++.++.++|+|+|+||+...+ ..
T Consensus 21 L~s~~~~v~~-~a~~~L~~l~~~~~~~~~~-i~~~g~i~~L~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 21 LNSPDQQELQ-SALRKLSQIASGGNEQIQA-VIDAGALPALVQLLS-------SPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp TTCSCHHHHH-HHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hcCCCHHHHH-HHHHHHHHHHcCCHHHHHH-HHHcCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5667888887 9999999999999998866 569999999999876 3378999999999999996543 57
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|+++.++.+++.....+++ .|.|++.|+|.+.+..-. .-..++|.|.++|.++|+++.+.|+|++.+++.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQ----EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHcCCcHHHHH----HHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999877777777 999999999975322111 224589999999999999999999999999997
Q ss_pred hccCCCCCccchhccccHHHHHHHhcc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+ .++..+.+++.|.++.|++++.+
T Consensus 168 ~---~~~~~~~~~~~g~i~~L~~ll~~ 191 (210)
T 4db6_A 168 G---GNEQKQAVKEAGALEKLEQLQSH 191 (210)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHGGGC
T ss_pred C---CcHHHHHHHHCCCHHHHHHHHhC
Confidence 6 34567888999999999999963
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-19 Score=164.65 Aligned_cols=206 Identities=17% Similarity=0.128 Sum_probs=159.8
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc-c---cchhhh
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR-E---AGSVFE 81 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d-~---~~~Vl~ 81 (256)
+++.+. +|||+|+|++.+.++....|+...|+||.|+++|. +++.++.|++.|+|.|++.. . ...|.+
T Consensus 97 ~~~~q~-~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-------s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~ 168 (354)
T 3nmw_A 97 SITLRR-YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-------SESEDLQQVIASVLRNLSWRADVNSKKTLRE 168 (354)
T ss_dssp HHHHHH-HHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-------CCCHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 456677 99999999999887666443346788999999776 34789999999999999973 2 357899
Q ss_pred cCcHHHHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCCCC-CC--hHHHHHHHHHhhcCCCH----HHHHHHHHHHHH
Q psy15268 82 AGGLASVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQ--LPEAVEALSLLLRHEDT----HISDAALRCFAS 153 (256)
Q Consensus 82 ~G~l~alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~--v~~~lP~L~~lL~~~D~----~vv~~ac~als~ 153 (256)
+|++++++.++. .....+++ .|++++-|++.+-+... .. ...++|.|.++|.+.++ +++++|+|++.+
T Consensus 169 ~G~Ip~Lv~lL~~~~~~~~~~----~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 169 VGSVKALMECALEVKKESTLK----SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp TTHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCHHHHH----HHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHH
Confidence 999999999864 33445566 88888888876321111 22 46899999999987754 599999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS 233 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S 233 (256)
|+.-....++..+.+++.|.++.|+++|.+ + +..........|++|+.++
T Consensus 245 Ls~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--~----------------------------~~~v~~~A~~aL~nLa~~~ 294 (354)
T 3nmw_A 245 VSSLIATNEDHRQILRENNCLQTLLQHLKS--H----------------------------SLTIVSNACGTLWNLSARN 294 (354)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHTTC--S----------------------------CHHHHHHHHHHHHHHTSSC
T ss_pred HHhhccCCHHHHHHHHHcCCHHHHHHHHcC--C----------------------------ChHHHHHHHHHHHHHhCCC
Confidence 996211245678899999999999999963 1 2246678899999999999
Q ss_pred HHHHHHHHhcChHHHHhhhh
Q psy15268 234 PSITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 234 ~~it~~Ll~~~l~~~l~~~~ 253 (256)
++....+++.+.-..|.++|
T Consensus 295 ~~~~~~i~~~G~i~~Lv~LL 314 (354)
T 3nmw_A 295 PKDQEALWDMGAVSMLKNLI 314 (354)
T ss_dssp HHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999555665554
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=163.44 Aligned_cols=216 Identities=12% Similarity=0.146 Sum_probs=158.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--ch
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GS 78 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~ 78 (256)
+|+..+++.+. .|+|||+|+...+++.... +++.|+||.|++.|. . ..+.++.|++.|+|.|||.+.. ..
T Consensus 52 lL~s~~~~~~~-~A~~aL~nLa~~~~~~k~~-i~~~G~i~~Lv~lL~-~-----~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 52 LLRSPNQNVQQ-AAAGALRNLVFRSTTNKLE-TRRQNGIREAVSLLR-R-----TGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp HTTSSCHHHHH-HHHHHHHHHHSSCHHHHHH-HHHTTCHHHHHHHHT-T-----CCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred HHcCCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHHcCCHHHHHHHHh-h-----CCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 36677888887 9999999999998988865 669999999999886 2 3367899999999988887521 12
Q ss_pred hhh--------------------------------------------------------c-CcHHHHHHhhcc------c
Q psy15268 79 VFE--------------------------------------------------------A-GGLASVLLFIKQ------H 95 (256)
Q Consensus 79 Vl~--------------------------------------------------------~-G~l~alL~~ldf------f 95 (256)
|++ . |++.+++.++.. +
T Consensus 124 i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 333 3 556666555542 0
Q ss_pred Cccc----------------------------------------------------------------------------
Q psy15268 96 GHSV---------------------------------------------------------------------------- 99 (256)
Q Consensus 96 ~~~~---------------------------------------------------------------------------- 99 (256)
....
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc
Confidence 0000
Q ss_pred -------------chhhhhHHHHHHHHhcCCCCCCCCC-----h--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 100 -------------HKDTLHSAMAVVSRLCSKMEPQDPQ-----L--PEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 100 -------------qr~~l~~a~~~vsNlCr~~~~~~~~-----v--~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
-..+...|.|+++|+|++..+.... + ...+|.|.++|++.|.++...|||++++++..
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-- 361 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-- 361 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--
Confidence 0012234789999999986443211 2 36789999999999999999999999999874
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
++++.++..|.++.|+++|..... +...+..+...+++.|..+..++++.++.
T Consensus 362 ---~~~~~~i~~~~i~~Lv~lL~~~~~------------------------~~~~~~~v~~~~l~~l~ni~~~~~~~~~~ 414 (457)
T 1xm9_A 362 ---PLLHRVMGNQVFPEVTRLLTSHTG------------------------NTSNSEDILSSACYTVRNLMASQPQLAKQ 414 (457)
T ss_dssp ---GGGHHHHHHHTHHHHHHTTTSCCS------------------------CSTTHHHHHHHHHHHHHHHHTTCTHHHHH
T ss_pred ---HHHHHHHHHhhhHHHHHhccCCCC------------------------CCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 468888889999999999964211 01133457778999999999999999999
Q ss_pred HHhcChHHHHhhhh
Q psy15268 240 LLHSDLPDAIGCPR 253 (256)
Q Consensus 240 Ll~~~l~~~l~~~~ 253 (256)
+.+.+.-+-|.+++
T Consensus 415 i~~~g~l~~L~~L~ 428 (457)
T 1xm9_A 415 YFSSSMLNNIINLC 428 (457)
T ss_dssp HCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 99888555555443
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-19 Score=178.72 Aligned_cols=192 Identities=14% Similarity=0.171 Sum_probs=153.2
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchh----------------------------hh---HHHHhCCcHHHHHHHhhcccC
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAEC----------------------------TR---RIVAIDGAMKAICSRLSLGAG 51 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~----------------------------t~---~ivv~~gAVp~L~~~L~~~i~ 51 (256)
+..++..++ .|+|+|.|+..+..++ .. ..+++.|+||.|+++|.
T Consensus 431 ~s~d~~i~~-~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~---- 505 (810)
T 3now_A 431 RGGNQSCLY-GVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK---- 505 (810)
T ss_dssp HTTCGGGHH-HHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT----
T ss_pred CCCChHHHH-HHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc----
Confidence 445778888 9999999999987322 11 34679999999999776
Q ss_pred CCCCCcHHHHHHHHHHHHHHhccc--cchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C---Ch
Q psy15268 52 IASRTSKDLAEQCIKVLELICTRE--AGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P---QL 125 (256)
Q Consensus 52 ~~~~~~~DlaEQal~aLe~Is~d~--~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~---~v 125 (256)
+++.++.|||+|+|+|||++. .+.|+++|++.+++.++...+...|+ +|.|+++|+|++.+|.. + .+
T Consensus 506 ---s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~----~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 506 ---TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKR----HATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHH----HHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHH----HHHHHHHHHhcCCChhhhhcchhh
Confidence 447899999999999999873 46899999999999999866556677 99999999999876543 3 25
Q ss_pred HHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCcccccc
Q psy15268 126 PEAVEALSLLLRHE-DTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASA 204 (256)
Q Consensus 126 ~~~lP~L~~lL~~~-D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~ 204 (256)
.+++|.|.++|+++ +.....+|+||+++|+++ +++.-+.+++.|.+++|++||.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~---~d~~~~~Ii~aG~l~~Lv~LL~s~-------------------- 635 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASM---NESVRQRIIKEQGVSKIEYYLMED-------------------- 635 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHHHSC--------------------
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHcCC--------------------
Confidence 67999999999876 344557899999999987 345677899999999999999742
Q ss_pred CCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 205 SGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 205 ~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
++.......+.|++|+.+...+++-
T Consensus 636 ----------~~~Vq~~A~~~L~NLa~~~~~~~~~ 660 (810)
T 3now_A 636 ----------HLYLTRAAAQCLCNLVMSEDVIKMF 660 (810)
T ss_dssp ----------CTTHHHHHHHHHHHHTTSHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHhCChHHHHHH
Confidence 2356678899999999876655443
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=147.35 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=139.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+++.+. .|+|+|.|+..+.++.... +++.|++|.|++.|. .++.++.++|+|+|+||+.+.. ..
T Consensus 63 L~~~~~~v~~-~a~~~L~~l~~~~~~~~~~-i~~~g~i~~L~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 63 LSSPNEQILQ-EALWALSNIASGGNEQIQA-VIDAGALPALVQLLS-------SPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp GGCSCHHHHH-HHHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHGGG-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHHcCCHHHHHHHHc-------CCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 4556667777 9999999999999998865 679999999999877 2478999999999999998865 45
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|+++.++.+++.....+++ .|.|++.|+|++.+.... .-..++|.|.++|.+.|+++.+.|+|++.+++.
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQ----EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhCCCHHHHH----HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999876666677 999999999976422111 125679999999999999999999999999996
Q ss_pred hccCCCCCccchhccccHHHHHHHhcc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+ +++..+.+++.|.++.|+++|.+
T Consensus 210 ~---~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 210 G---GNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp S---CHHHHHHHHHTTHHHHHHTTTTC
T ss_pred C---CHHHHHHHHHCCcHHHHHHHhCC
Confidence 5 45678889999999999999963
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=163.78 Aligned_cols=206 Identities=17% Similarity=0.124 Sum_probs=157.5
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc----ccchhhh
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR----EAGSVFE 81 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d----~~~~Vl~ 81 (256)
+++++. +|+|+|+|++.+.++....+....|+||.|+++|. +++.++.|++.|+|.|||.. ....|.+
T Consensus 213 ~~~l~~-~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-------s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~ 284 (458)
T 3nmz_A 213 SITLRR-YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-------SESEDLQQVIASVLRNLSWRADVNSKKTLRE 284 (458)
T ss_dssp HHHHHH-HHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh-------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 355566 99999999999887666443336788999999876 34789999999999999973 2257899
Q ss_pred cCcHHHHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCC-CCCC--hHHHHHHHHHhhcCCCH----HHHHHHHHHHHH
Q psy15268 82 AGGLASVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEP-QDPQ--LPEAVEALSLLLRHEDT----HISDAALRCFAS 153 (256)
Q Consensus 82 ~G~l~alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~-~~~~--v~~~lP~L~~lL~~~D~----~vv~~ac~als~ 153 (256)
+|++++++.++. .....+++ .|++++-|++.+-+. .... ...++|.|.++|.+.++ +++++|+|++.+
T Consensus 285 ~GaI~~LV~lLl~s~~~~v~~----~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~n 360 (458)
T 3nmz_A 285 VGSVKALMECALEVKKESTLK----SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360 (458)
T ss_dssp TTHHHHHHHHHTTCCSHHHHH----HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCHHHHH----HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Confidence 999999999864 33445566 777777777652111 1122 46799999999987754 599999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS 233 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S 233 (256)
|+.-....++..+.+++.|.++.|+++|.+ + +..........|++|+.++
T Consensus 361 Ls~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~----------------------------~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 361 VSSLIATNEDHRQILRENNCLQTLLQHLKS--H----------------------------SLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--S----------------------------CHHHHHHHHHHHHHHHSSC
T ss_pred HHhcccCCHHHHHHHHHcccHHHHHHHHcC--C----------------------------ChHHHHHHHHHHHHHHcCC
Confidence 996211245678999999999999999963 1 2246678899999999999
Q ss_pred HHHHHHHHhcChHHHHhhhh
Q psy15268 234 PSITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 234 ~~it~~Ll~~~l~~~l~~~~ 253 (256)
++....+++.+....|.++|
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999555665554
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=149.22 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=164.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc-c--ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE-A--GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~-~--~~ 78 (256)
|+..+++.+. .|+|+|.|+....++.... +++.|++|.|++.|. . .+..++.++++|+|++|+... + ..
T Consensus 116 L~~~~~~vr~-~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~~l~-~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 116 LSSEFEDVQE-QAVWALGNIAGDSTMCRDY-VLDCNILPPLLQLFS-K-----QNRLTMTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp TTCSCHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHHTT-S-----CCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred HcCCCHHHHH-HHHHHHHHHccCCHHHHHH-HHHCCCHHHHHHHhc-C-----CCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 4556777777 9999999999998887754 668999999999776 2 247899999999999999764 3 23
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
.+-.|++..++.+++.....+++ .|.|+++|+|++.++... .-..++|.|..+|.++|+++.+.|+|++.+++.
T Consensus 188 ~~~~~~l~~L~~~l~~~~~~v~~----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 188 AKVSPCLNVLSWLLFVSDTDVLA----DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp GGTGGGHHHHHHHTTCCCHHHHH----HHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccCCHHHHH----HHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 34489999999999865555555 999999999987432111 224689999999999999999999999999998
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
+ .++..+.+++.|+++.|+++|.+. ++......++.|+.++.++++.
T Consensus 264 ~---~~~~~~~~~~~~~l~~L~~ll~~~------------------------------~~~vr~~a~~~L~~l~~~~~~~ 310 (450)
T 2jdq_A 264 G---DDIQTQVILNCSALQSLLHLLSSP------------------------------KESIKKEACWTISNITAGNRAQ 310 (450)
T ss_dssp S---CHHHHHHHHTTTHHHHHHHHTTCS------------------------------SHHHHHHHHHHHHHHTTSCHHH
T ss_pred C---ChHHHHHHHHCccHHHHHHHHcCC------------------------------CHHHHHHHHHHHHHHHcCCHHH
Confidence 7 345677788899999999999631 2356678999999999999999
Q ss_pred HHHHHhcChHHHHhhh
Q psy15268 237 TSDLLHSDLPDAIGCP 252 (256)
Q Consensus 237 t~~Ll~~~l~~~l~~~ 252 (256)
.+.+++.++-..+.+.
T Consensus 311 ~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 311 IQTVIDANIFPALISI 326 (450)
T ss_dssp HHHHHHTTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH
Confidence 9999988854444443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=137.73 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=153.2
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+++.+. .|+|+|.|+....++.... +++.|++|.|++.|. .++.++.++|+|+|++++...+ ..
T Consensus 53 l~~~~~~v~~-~a~~~L~~l~~~~~~~~~~-~~~~~~i~~l~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 123 (252)
T 4hxt_A 53 LTSTDSEVQK-EAARALANIASGPDEAIKA-IVDAGGVEVLVKLLT-------STDSEVQKEAARALANIASGPDEAIKA 123 (252)
T ss_dssp TTCSCHHHHH-HHHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHTT-------CSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HhCCCHHHHH-HHHHHHHHHHcCChHHHHH-HHHCCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566777777 9999999999988888865 669999999999776 3478999999999999996544 46
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|++..++.+++.....+++ .|.|++.|+|++.+.... .-..++|.|..+|.++|+++...|+|++..++.
T Consensus 124 ~~~~~~i~~L~~~l~~~~~~~~~----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 124 IVDAGGVEVLVKLLTSTDSEVQK----EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHH----HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999876666777 999999999986322111 235699999999999999999999999999997
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP 234 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~ 234 (256)
+ +++..+.+.+.|+++.|++++.+. ++......+..|.+++...+
T Consensus 200 ~---~~~~~~~l~~~~~i~~L~~ll~~~------------------------------~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 200 G---PTSAIKAIVDAGGVEVLQKLLTST------------------------------DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp S---BHHHHHHHHHTTHHHHHHHGGGCS------------------------------CHHHHHHHHHHHHHHHHTCB
T ss_pred C---CHHHHHHHHHCCCHHHHHHHHCCC------------------------------cHHHHHHHHHHHHHHHcCCC
Confidence 5 456788999999999999999631 23556678888888887654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=150.28 Aligned_cols=206 Identities=11% Similarity=0.081 Sum_probs=162.2
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCc-hhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSA-ECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p-~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
|...+++.++ .|+|+|.+++++.+ +.... ++..|+||.|++.|. . ..+.++.++|+|+|++|+.+.+ .
T Consensus 83 L~s~~~~~~~-~A~~~L~~l~s~~~~~~~~~-~~~~g~v~~Lv~lL~-~-----~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 83 VYSDDNNLQL-EATTQFRKLLSIERSPPIEE-VIQSGVVPRFVQFLT-R-----EDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HTSSCHHHHH-HHHHHHHHHHTCSSSCCHHH-HHHTTCHHHHHHHHT-C-----TTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHhcCCCCchHHH-HHHCCCHHHHHHHhC-C-----CCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3456788888 99999999999887 55544 669999999999887 2 1248999999999999998644 4
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChH--HHHHHHHHhh-cCCCHHHHHHHHHHHHHh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLP--EAVEALSLLL-RHEDTHISDAALRCFASL 154 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~--~~lP~L~~lL-~~~D~~vv~~ac~als~L 154 (256)
.+++.|++.+++.++......+++ .|+|++.|+|...+.....+. .++|.|..+| .+.|+.+...++|+|++|
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~----~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVRE----QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHH----HHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHH----HHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 789999999999999876566666 999999999975322112232 4899999998 678999999999999999
Q ss_pred hhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCH
Q psy15268 155 SDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSP 234 (256)
Q Consensus 155 ~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~ 234 (256)
+.+. + ........|+++.|+++|.+. .+......+..|+.++.+++
T Consensus 231 ~~~~---~-~~~~~~~~~~l~~L~~lL~~~------------------------------~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 231 CRGK---P-QPSFEQTRPALPALARLIHSN------------------------------DEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HCSS---S-CCCHHHHTTHHHHHHHHTTCC------------------------------CHHHHHHHHHHHHHHTSSCH
T ss_pred HcCC---C-CCcHHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHHHcCCH
Confidence 9873 2 233344589999999999531 23567789999999999999
Q ss_pred HHHHHHHhcChHHHHhhhh
Q psy15268 235 SITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 235 ~it~~Ll~~~l~~~l~~~~ 253 (256)
+....+++.++...|.++|
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHcCHHHHHHHHH
Confidence 9988998888555555443
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=161.26 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=143.4
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccchhhh
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAGSVFE 81 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~~Vl~ 81 (256)
..+.|..+ .|+|+||+++.|.|+.+..++...|+||.|+.++. +...++.|||+|+|++++++ .++.|++
T Consensus 258 ~~~~~~~~-~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~-------s~~~~~q~~A~~al~~aa~~~~~R~~I~~ 329 (810)
T 3now_A 258 APDMESKV-RVTVAITALLNGPLDVGNQVVAREGILQMILAMAT-------TDDELQQRVACECLIAASSKKDKAKALCE 329 (810)
T ss_dssp SCCHHHHH-HHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH-------SSCHHHHHHHHHHHHHHTTSHHHHHTTHH
T ss_pred cCChHhHH-HHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45566667 99999999999999999887769999999998776 34889999999999999888 3367888
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCC-----CCC-C-C---ChHHHHHHHHHhhcCC--CHHHHHHHHH
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKM-----EPQ-D-P---QLPEAVEALSLLLRHE--DTHISDAALR 149 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~-----~~~-~-~---~v~~~lP~L~~lL~~~--D~~vv~~ac~ 149 (256)
+|+ +.+..++..... ..| .|++.++|+.. +++ . + .+.+++|.|.++|.++ |+++.++|+|
T Consensus 330 ~gv-~~L~~Ll~s~~~-~vr------~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 330 QGV-DILKRLYHSKND-GIR------VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp HHH-HHHHHHTTCSCH-HHH------HHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred cCc-HHHHHHHcCCCH-HHH------HHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 876 888887752221 222 36777777742 222 1 2 3789999999999998 9999999999
Q ss_pred HHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHH
Q psy15268 150 CFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSAL 229 (256)
Q Consensus 150 als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l 229 (256)
+++||+++. +.+.+-+.+.|+++.|+++|.+. .+......+++|+++
T Consensus 402 aLayLS~~~---~vk~~lv~d~g~Ip~LV~LL~s~------------------------------d~~i~~~al~~L~NL 448 (810)
T 3now_A 402 GLAYLTLDA---ECKEKLIEDKASIHALMDLARGG------------------------------NQSCLYGVVTTFVNL 448 (810)
T ss_dssp HHHHHTTSH---HHHHHHHHCHHHHHHHHHHHHTT------------------------------CGGGHHHHHHHHHHH
T ss_pred HHHHHhCCc---HHHHHHHHccchHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHH
Confidence 999999874 46777777889999999999631 125667899999999
Q ss_pred hcCC
Q psy15268 230 CRGS 233 (256)
Q Consensus 230 ~~~S 233 (256)
+++.
T Consensus 449 t~~~ 452 (810)
T 3now_A 449 CNAY 452 (810)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 9976
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=153.16 Aligned_cols=164 Identities=13% Similarity=0.171 Sum_probs=136.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+++.+. .|+|+|.|++...++.... +++.|+||.|++.|. +++.++.++|.|+|.||+.+.+ ..
T Consensus 11 L~s~~~~~q~-~A~~~L~~l~~~~~~~~~~-i~~~g~i~~Lv~lL~-------s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 11 LSSQDEKYQA-IGAYYIQHTCFQDESAKQQ-VYQLGGICKLVDLLR-------SPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHSSCTHHHH-HHHHHHHHHTSSCSSHHHH-HHHTTHHHHHHHHTT-------SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HCCCCHHHHH-HHHHHHHHHHcCChHHHHH-HHHcCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4567888888 9999999999877776645 669999999999776 3478999999999999998633 46
Q ss_pred hhhcCcHHHHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhc--------C--------CC
Q psy15268 79 VFEAGGLASVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLR--------H--------ED 140 (256)
Q Consensus 79 Vl~~G~l~alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~--------~--------~D 140 (256)
|.++|++++++.++. .....+|+ .|+|++.|+|++ +.... .+..++|.|.++|. + .|
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~----~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQK----QLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHH----HHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHH----HHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhccccc
Confidence 889999999999998 55566777 999999999988 33223 55699999999993 2 46
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcc
Q psy15268 141 THISDAALRCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSN 183 (256)
Q Consensus 141 ~~vv~~ac~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~ 183 (256)
.+++.+|+|||.+|+.+ ++..+.+++. |+++.|+++|.+
T Consensus 157 ~~v~~~a~~aL~nLs~~----~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA----DAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHHHHHHHTTS----HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC----HHHHHHHHHcCCCHHHHHHHHHh
Confidence 78889999999999965 4567889998 999999999974
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=151.06 Aligned_cols=206 Identities=18% Similarity=0.196 Sum_probs=161.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|...+++.+. .|||||.|+.++.++.... ++..|++|.|+++|. .+..++.+.++++|+||+.... ..
T Consensus 260 L~~~~~~v~~-~a~~aL~~l~~~~~~~~~~-v~~~g~i~~Lv~lL~-------~~~~~v~~~a~~aL~nl~~~~~~~~~~ 330 (529)
T 3tpo_A 260 LHHNDPEVLA-DSCWAISYLTDGPNERIEM-VVKKGVVPQLVKLLG-------ATELPIVTPALRAIGNIVTGTDEQTQK 330 (529)
T ss_dssp TTSSCHHHHH-HHHHHHHHHHSSCHHHHHH-HHTTTCHHHHHHHHT-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hcCCcHHHHH-HHHHHHHHhhhhhhhhHHH-HHhccchHHHHHHhc-------CCChhHHHHHHHHHHHHHccchHHHHH
Confidence 4455667666 9999999999999988865 679999999999876 3478999999999999986433 47
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCCh--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL--PEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v--~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
++++|++..+..++......+++ .|.|+++|+|.+.+.....+ ..++|.|..+|.+.|.++...|+||++.++.
T Consensus 331 i~~~g~l~~L~~LL~~~~~~i~~----~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 331 VIDAGALAVFPSLLTNPKTNIQK----EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHTTGGGGHHHHTTCSSHHHHH----HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHcCCCHHHHH----HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999877777777 99999999998743222222 3589999999999999999999999999997
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcC----
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRG---- 232 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~---- 232 (256)
+. +++.+..+++.|+++.|++||... .+.....++..|.++.+.
T Consensus 407 ~~--~~~~~~~l~~~g~i~~L~~LL~~~------------------------------d~~i~~~~L~aL~nil~~~~~~ 454 (529)
T 3tpo_A 407 GG--TVEQIVYLVHCGIIEPLMNLLSAK------------------------------DTKIIQVILDAISNIFQAAEKL 454 (529)
T ss_dssp HS--CHHHHHHHHHTTCHHHHHHGGGCS------------------------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred CC--CHHHHHHHHHCcCHHHHHHHhcCC------------------------------CHHHHHHHHHHHHHHHHHhHhc
Confidence 64 457888999999999999999631 235566777888777652
Q ss_pred -CHH-HHHHHHhcChHHHHhhh
Q psy15268 233 -SPS-ITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 233 -S~~-it~~Ll~~~l~~~l~~~ 252 (256)
..+ +...+-+.+.-+.|+.+
T Consensus 455 ~~~~~~~~~iee~ggl~~ie~L 476 (529)
T 3tpo_A 455 GETEKLSIMIEECGGLDKIEAL 476 (529)
T ss_dssp TCHHHHHHHHHHTTCHHHHTGG
T ss_pred cChHHHHHHHHHCCcHHHHHHH
Confidence 333 33334445566777654
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.5e-17 Score=149.38 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=147.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhcc-CchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDV-SAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~-~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
|+..+++.+. .|+|+|.|+..+ .++.. ..+++.|+||.|++.|. . ....++.|+++++|.|+|..+. .
T Consensus 136 L~s~~~~v~~-~A~~aL~nLs~~~~~~~k-~~i~~~G~Ip~Lv~lL~-~-----~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 136 LKSESEDLQQ-VIASVLRNLSWRADVNSK-KTLREVGSVKALMECAL-E-----VKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp GGCSCHHHHH-HHHHHHHHHHTTCCHHHH-HHHHHTTHHHHHHHHHH-H-----CCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCCHHHHH-HHHHHHHHHhccCCHHHH-HHHHHCCCHHHHHHHHh-c-----CCCHHHHHHHHHHHHHHHccChhhhH
Confidence 4556677777 999999999986 34444 44679999999999876 3 2367999999999999998432 3
Q ss_pred hhh-hcCcHHHHHHhhcccCcc----cchhhhhHHHHHHHHhcC---CCCCCCCCh--HHHHHHHHHhhcCCCHHHHHHH
Q psy15268 78 SVF-EAGGLASVLLFIKQHGHS----VHKDTLHSAMAVVSRLCS---KMEPQDPQL--PEAVEALSLLLRHEDTHISDAA 147 (256)
Q Consensus 78 ~Vl-~~G~l~alL~~ldff~~~----~qr~~l~~a~~~vsNlCr---~~~~~~~~v--~~~lP~L~~lL~~~D~~vv~~a 147 (256)
.+. .+|++.+++.++...... +++ +|+|++.|+|. +.+.....+ ..++|.|.++|.+.+.++.+.|
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~----~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIE----SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHH----HHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHH----HHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 455 899999999999764432 455 99999999996 221111222 3479999999999999999999
Q ss_pred HHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHH
Q psy15268 148 LRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLS 227 (256)
Q Consensus 148 c~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls 227 (256)
+|++..|+.+ +++..+.+++.|.++.|++||.+. +..........|.
T Consensus 284 ~~aL~nLa~~---~~~~~~~i~~~G~i~~Lv~LL~s~------------------------------~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 284 CGTLWNLSAR---NPKDQEALWDMGAVSMLKNLIHSK------------------------------HKMIAMGSAAALR 330 (354)
T ss_dssp HHHHHHHTSS---CHHHHHHHHHTTHHHHHHTTTTCS------------------------------SHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CHHHHHHHHHCCCHHHHHHHHhCC------------------------------CHHHHHHHHHHHH
Confidence 9999999965 457889999999999999999531 2244556778889
Q ss_pred HHhcCCHHHH
Q psy15268 228 ALCRGSPSIT 237 (256)
Q Consensus 228 ~l~~~S~~it 237 (256)
.|+.+.|+.-
T Consensus 331 nL~~~~~~~~ 340 (354)
T 3nmw_A 331 NLMANRPAKY 340 (354)
T ss_dssp HHHTTCCGGG
T ss_pred HHHcCCHHHH
Confidence 9998887753
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=151.20 Aligned_cols=213 Identities=17% Similarity=0.221 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhccc-CCCCCCcHHHHHHHHHHHHHHhcccc----------
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGA-GIASRTSKDLAEQCIKVLELICTREA---------- 76 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i-~~~~~~~~DlaEQal~aLe~Is~d~~---------- 76 (256)
+.+++.|+|||.|+....++.-+.++-..|.|+.|+..|. .. .- ..+...+.|.|+|+|.|+|....
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~-~~~~~-~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ-AEIGQ-KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH-HHHHT-TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH-Hhhcc-cCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3556599999999999887755554434677899999886 31 00 11245799999999999986521
Q ss_pred ------------------chhhhcCcHHHHHHhhccc-CcccchhhhhHHHHHHHHhcCCCCCCC-C---Ch--HHHHHH
Q psy15268 77 ------------------GSVFEAGGLASVLLFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQD-P---QL--PEAVEA 131 (256)
Q Consensus 77 ------------------~~Vl~~G~l~alL~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~-~---~v--~~~lP~ 131 (256)
..+.+.+++..++.++... ...+|. +|+|++.|+|++..+.. . .| ...+|.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E----~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~ 359 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE----ASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH----HHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence 0123345556677777543 345555 99999999999864432 1 23 578999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccc
Q psy15268 132 LSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATE 211 (256)
Q Consensus 132 L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
|..||++.|.++++.|||+|.+|+++. ..+.+++.|.+++|++||.+... + | .
T Consensus 360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~-----~~~~~I~~g~ip~LV~LL~~~~~-~-----------~----------~ 412 (584)
T 3l6x_A 360 IADLLTNEHERVVKAASGALRNLAVDA-----RNKELIGKHAIPNLVKNLPGGQQ-N-----------S----------S 412 (584)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTSSSSSC-S-----------G----------G
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCh-----hHHHHHHhCCHHHHHHHhcCCcc-c-----------c----------c
Confidence 999999999999999999999999862 46678889999999999974211 0 0 0
Q ss_pred cccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhhhh
Q psy15268 212 AKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 212 ~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~~~ 253 (256)
...+..+...+++.|.+++.++++.++.+++.+.-..|.+++
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL 454 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLIN 454 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH
Confidence 124556788899999999999999999999999444444443
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-16 Score=146.95 Aligned_cols=208 Identities=11% Similarity=0.089 Sum_probs=162.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc---cch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE---AGS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~---~~~ 78 (256)
|...+++.+. .|+++|.++++.........++..|+||.|++.|. . ..+.++.++|+|+|++|+... ...
T Consensus 96 L~s~~~~~~~-~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~-~-----~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 96 LNSDDMQEQL-SATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-E-----NQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HSCSSHHHHH-HHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-T-----TSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhC-C-----CCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3456788888 99999999998753222223569999999999776 2 226889999999999999854 357
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|++..++.++......++. .|+|++.|+|...+.... .-..++|.|..+|.+.|+++...|+|++++|+.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~----~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKE----QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHH----HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHcCCCHHHHH----HHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 88999999999999876666777 999999999976422221 234689999999999999999999999999997
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
+. +.........|+++.|+++|.+. .+......+..|+.|+.++++.
T Consensus 245 ~~---~~~~~~~~~~~~l~~L~~lL~~~------------------------------d~~v~~~a~~~L~~L~~~~~~~ 291 (530)
T 1wa5_B 245 GK---KPQPDWSVVSQALPTLAKLIYSM------------------------------DTETLVDACWAISYLSDGPQEA 291 (530)
T ss_dssp CS---SSCCCHHHHGGGHHHHHHHTTCC------------------------------CHHHHHHHHHHHHHHHSSCHHH
T ss_pred CC---CCCCcHHHHHhHHHHHHHHHcCC------------------------------CHHHHHHHHHHHHHHhCCCHHH
Confidence 63 23455666789999999999531 1356678899999999999998
Q ss_pred HHHHHhcChHHHHhhhh
Q psy15268 237 TSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 237 t~~Ll~~~l~~~l~~~~ 253 (256)
...+++.++...|...|
T Consensus 292 ~~~~~~~~~v~~Lv~lL 308 (530)
T 1wa5_B 292 IQAVIDVRIPKRLVELL 308 (530)
T ss_dssp HHHHHHTTCHHHHHHGG
T ss_pred HHHHHhcCcHHHHHHHH
Confidence 88888888555554443
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=142.21 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=162.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc--cchh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE--AGSV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~--~~~V 79 (256)
|++.+++..- .++++|.|+..+.++.... +++.|++|.|++.|. .- .+.++.+.+..+|.+++... ...+
T Consensus 152 l~~~~~~~~~-~~~~~L~~la~~~~~~~~~-i~~~~~i~~L~~ll~-~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~ 223 (529)
T 1jdh_A 152 LNKTNVKFLA-ITTDCLQILAYGNQESKLI-ILASGGPQALVNIMR-TY-----TYEKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp GGCCCHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHH-HC-----CCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HhcCCHHHHH-HHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHHHH-hC-----ChHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3444555555 8889999999999988865 568999999999887 43 36789999999999998742 2578
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
++.|++.+++.++......+++ +++|++.|+|++.+. ...+..++|.|.++|+++|+++.+.+||++++++.+
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~----~a~~~L~~l~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-- 296 (529)
T 1jdh_A 224 VEAGGMQALGLHLTDPSQRLVQ----NCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 296 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHH----HHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--
T ss_pred HHCCCHHHHHHHHhCCChHHHH----HHHHHHHHHhcCChh-hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--
Confidence 8999999999999866555566 999999999998532 236789999999999999999999999999999876
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH---H
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS---I 236 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~---i 236 (256)
+++..+.+.+.|.++.|+++|.+.+ ..+......++.|..++.++++ .
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~----------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~ 347 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAG----------------------------DREDITEPAICALRHLTSRHQEAEMA 347 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccC----------------------------CHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 3467888999999999999997421 1235667899999999998654 3
Q ss_pred HHHHHhcChHHHHhh
Q psy15268 237 TSDLLHSDLPDAIGC 251 (256)
Q Consensus 237 t~~Ll~~~l~~~l~~ 251 (256)
...+++.+....+.+
T Consensus 348 ~~~i~~~~~i~~L~~ 362 (529)
T 1jdh_A 348 QNAVRLHYGLPVVVK 362 (529)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCChhHHHH
Confidence 345666663333333
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=156.65 Aligned_cols=192 Identities=15% Similarity=0.132 Sum_probs=147.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc----cc
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR----EA 76 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d----~~ 76 (256)
+|+..+++.++ +|||+|+|++...++.... |++.|+||.|+++|. +++.++.|+|+|+|.||+.. ..
T Consensus 56 ~L~s~~~~~q~-~Aa~~L~~La~~~~~~k~~-V~~~G~Ip~LV~LL~-------s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 56 MLGFRLDAVKS-NAAAYLQHLCYRNDKVKTD-VRKLKGIPVLVGLLD-------HPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp HTTCSCHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHGGG-------CSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred HHCCCCHHHHH-HHHHHHHHHHcCChHHHHH-HHHcCCcHHHHHHHC-------CCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 46777888888 9999999999999998865 679999999999886 44899999999999999972 33
Q ss_pred chhhhcCcHHHHHHhhccc-CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh------------------c
Q psy15268 77 GSVFEAGGLASVLLFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL------------------R 137 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL------------------~ 137 (256)
..|.++|++.+++.++... ...+|+ +|+|++.|++..-+.....++..+|.|.++| .
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e----~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTE----VITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHH----HHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHH----HHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 5799999999999999863 445677 9999999998742111126788999999986 2
Q ss_pred CCCHHHHHHHHHHHHHhhhhccCCCCCccchhc-cccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCc
Q psy15268 138 HEDTHISDAALRCFASLSDRFTRRGVDPAPLAQ-HGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASS 216 (256)
Q Consensus 138 ~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~-~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 216 (256)
++|.+|++.|.|||..|+... ++.=+.+++ .|+++.|+++|...... ...+.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~---~~~R~~i~~~~Gli~~LV~~L~~~~~~------------------------~~~~~ 255 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSER---SEARRKLRECDGLVDALIFIVQAEIGQ------------------------KDSDS 255 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC---HHHHHHHHHSTTHHHHHHHHHHHHHHT------------------------TCCSC
T ss_pred cccHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCcHHHHHHHHHHhhcc------------------------cCccH
Confidence 457899999999999999642 222455555 48999999999642100 01223
Q ss_pred chHHHHHHHHHHHhcC
Q psy15268 217 GSVSTIVSLLSALCRG 232 (256)
Q Consensus 217 ~~~~~~l~~Ls~l~~~ 232 (256)
......+..|.+||..
T Consensus 256 ~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 256 KLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4566788888888866
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=138.18 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=141.7
Q ss_pred CCCCCCc--hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--
Q psy15268 1 MLDDTAP--ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-- 76 (256)
Q Consensus 1 ~L~~~~p--~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-- 76 (256)
+|...++ +.+. .|+|+|.|+....++.... +++.|+||.|+++|. +++.++.|+|.|+|.||+.+++
T Consensus 16 lL~s~~~~~~~q~-~Aa~~l~~L~~~~~~~r~~-I~~~G~Ip~LV~lL~-------s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 16 MLEADHMLPSRIS-AAATFIQHECFQKSEARKR-VNQLRGILKLLQLLK-------VQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp TCCSSCCCHHHHH-HHHHHHHHHHHHCHHHHHH-HHHTTHHHHHHHGGG-------CCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhCCCCchHHHHH-HHHHHHHHHHcCCcHHHHH-HHHcCCHHHHHHHHc-------CCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4666666 6777 9999999999999888865 679999999999887 3489999999999999998644
Q ss_pred -chhhhcCcHHHHHHhhcc-cCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhc----------------C
Q psy15268 77 -GSVFEAGGLASVLLFIKQ-HGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLR----------------H 138 (256)
Q Consensus 77 -~~Vl~~G~l~alL~~ldf-f~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~----------------~ 138 (256)
..|.++||+++++.++.. ....+|+ +|+.++-|+...-.-....+++.+|.|.+++. .
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e----~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKK----QITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHH----HHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCccccccccccc
Confidence 579999999999999974 3456676 77755555543211111267889999988752 2
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcc
Q psy15268 139 EDTHISDAALRCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSG 217 (256)
Q Consensus 139 ~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 217 (256)
.|.+|.++|-.|+..|+-. +++.=+.+.+. |+|+.|+++|...-.. ...+..
T Consensus 163 ~~~~v~~na~~~L~nLss~---~~~~R~~~r~~~Gli~~Lv~~l~~~~~~------------------------~~~~~k 215 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSA---GADGRKAMRRCDGLIDSLVHYVRGTIAD------------------------YQPDDK 215 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTS---CHHHHHHHHTSTTHHHHHHHHHHHHHHT------------------------TCTTCH
T ss_pred chHHHHHHHHHHHHHHhcC---CHHHHHHHHHCCCcHHHHHHHHHhhhhc------------------------ccchhH
Confidence 4889999999999999864 22334556554 8999999999642100 112335
Q ss_pred hHHHHHHHHHHHhc
Q psy15268 218 SVSTIVSLLSALCR 231 (256)
Q Consensus 218 ~~~~~l~~Ls~l~~ 231 (256)
+....+..|.+||.
T Consensus 216 ~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 216 ATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 66678888888875
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=146.18 Aligned_cols=207 Identities=14% Similarity=0.147 Sum_probs=161.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc--cchh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE--AGSV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~--~~~V 79 (256)
|+..+++.+- .+++||.|+..+.++.... +++.|+||.|++.|. . ..+.++.+.+..+|.+++... ...+
T Consensus 149 L~~~~~~~~~-~a~~~L~~La~~~~~~~~~-i~~~g~v~~Lv~lL~-~-----~~~~~~~~~a~~~L~nLs~~~~~~~~l 220 (644)
T 2z6h_A 149 LNKTNVKFLA-ITTDCLQILAYGNQESKLI-ILASGGPQALVNIMR-T-----YTYEKLLWTTSRVLKVLSVCSSNKPAI 220 (644)
T ss_dssp GGCCCHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHT-T-----CCCHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HCcCCHHHHH-HHHHHHHHHHhcCcHHHHH-HHHcCChHHHHHHHH-c-----CChHHHHHHHHHHHHHHhcCcccHHHH
Confidence 4445555444 6778999999998888865 569999999999887 3 236789999999999998642 3579
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
+++|++.+++.++......+++ +++|++.|+|++.+. ...+.+++|.|.++|.++|+++.+.|||+|.+|+.+
T Consensus 221 ~~~g~l~~L~~ll~~~~~~~~~----~a~~~L~nL~~~~~~-~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 221 VEAGGMQALGLHLTDPSQRLVQ----NCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp HHTTHHHHHHTTTTCSCHHHHH----HHHHHHHHHGGGCTT-CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred HHCCCHHHHHHHHhcCCHHHHH----HHHHHHHHHhhcchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 9999999999999765555566 999999999998533 347789999999999999999999999999999986
Q ss_pred CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH--HH
Q psy15268 160 RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS--IT 237 (256)
Q Consensus 160 ~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~--it 237 (256)
+++..+.+++.|.++.|+++|.+.+. .+......++.|..++...++ .+
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~----------------------------~~~v~~~a~~aL~nL~~~~~~~~~~ 344 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGD----------------------------REDITEPAICALRHLTSRHQEAEMA 344 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCC----------------------------cHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34567889999999999999975311 135667889999999886542 33
Q ss_pred HH-HHhcChHHHHhhh
Q psy15268 238 SD-LLHSDLPDAIGCP 252 (256)
Q Consensus 238 ~~-Ll~~~l~~~l~~~ 252 (256)
+. +++.+....|.+.
T Consensus 345 q~~v~~~~~l~~L~~l 360 (644)
T 2z6h_A 345 QNAVRLHYGLPVVVKL 360 (644)
T ss_dssp HHHHHHTTHHHHHHHT
T ss_pred HHHHHHccChHHHHHH
Confidence 43 5555544444433
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-16 Score=146.90 Aligned_cols=206 Identities=18% Similarity=0.187 Sum_probs=160.9
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|...+++.+. .|||||.|+.+..++.... ++..|++|.|+++|. .+..++.+.++++|+||+.... ..
T Consensus 241 L~~~~~~v~~-~A~~aL~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~-------~~~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 241 LHHNDPEVLA-DSCWAISYLTDGPNERIEM-VVKKGVVPQLVKLLG-------ATELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp TTCSCHHHHH-HHHHHHHHHTSSCHHHHHH-HHTTTCHHHHHHHHT-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HhcCCHHHHH-HHHHHHHHHhhchhhhHHH-HHhcccchhhhhhhc-------CCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 4556667666 9999999999999988865 679999999999876 3478999999999999976543 47
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCC--hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ--LPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~--v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|++..+..++......+++ .|.|+++|++.+.+..... -..++|.|..+|.+.|.++...|+||++.++.
T Consensus 312 i~~~g~l~~L~~LL~~~~~~v~~----~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 312 VIDAGALAVFPSLLTNPKTNIQK----EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHTTGGGGCC-CTTCSSHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHhcCCCHHHHH----HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999876667777 9999999999874222122 24589999999999999999999999999998
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCC---
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGS--- 233 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S--- 233 (256)
+. +++.+..+++.|.++.|+++|... .+.....++..|.++++..
T Consensus 388 ~~--~~~~~~~L~~~g~i~~L~~LL~~~------------------------------d~~i~~~~L~aL~nil~~~~~~ 435 (510)
T 3ul1_B 388 GG--TVEQIVYLVHCGIIEPLMNLLSAK------------------------------DTKIIQVILDAISNIFQAAEKL 435 (510)
T ss_dssp HC--CHHHHHHHHHTTCHHHHHHGGGCS------------------------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred cC--CHHHHHHHHHCCCHHHHHHHhcCC------------------------------CHHHHHHHHHHHHHHHHHhHhc
Confidence 74 457788999999999999999631 2356667888888887632
Q ss_pred --HHHHHHHH-hcChHHHHhhh
Q psy15268 234 --PSITSDLL-HSDLPDAIGCP 252 (256)
Q Consensus 234 --~~it~~Ll-~~~l~~~l~~~ 252 (256)
.+....++ +.+.-+.|+.+
T Consensus 436 ~~~~~~~~~iee~ggl~~ie~L 457 (510)
T 3ul1_B 436 GETEKLSIMIEECGGLDKIEAL 457 (510)
T ss_dssp TCHHHHHHHHHHTTHHHHHHHG
T ss_pred cchHHHHHHHHHcCcHHHHHHH
Confidence 33333344 44566777654
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=125.51 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=141.7
Q ss_pred hCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHH
Q psy15268 35 IDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVV 111 (256)
Q Consensus 35 ~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~v 111 (256)
..|..|.|..+|. +++.++.+.|+|+|.+++...+ ..+++.|++..++.++......+++ .|+|++
T Consensus 10 ~~~~~~~l~~LL~-------s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~----~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLN-------SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ----EALWAL 78 (210)
T ss_dssp ---CHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHH----HHHHHH
T ss_pred ccchhHHHHHHhc-------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHH----HHHHHH
Confidence 5788899998776 3478999999999999996543 4789999999999999876666677 999999
Q ss_pred HHhcCCCCCCCCC--hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCC
Q psy15268 112 SRLCSKMEPQDPQ--LPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNP 189 (256)
Q Consensus 112 sNlCr~~~~~~~~--v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~ 189 (256)
.|+|.+.+..... -..++|.|..+|.+.|+++.+.|+|++.+++.+ +++..+.+++.|+++.|+++|.+.
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~----- 150 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSSP----- 150 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCS-----
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcHHHHHHHHcCC-----
Confidence 9999764222122 235889999999999999999999999999975 456778899999999999999631
Q ss_pred CcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhhhh
Q psy15268 190 LNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~~~ 253 (256)
++......+..|..+|.++++....+.+.+..+.|.+++
T Consensus 151 -------------------------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 151 -------------------------NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred -------------------------CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 235677899999999999999999999998666666654
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=138.08 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=121.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
+|+..+++++. .|||||.|++..+|++... +++.|++|.|+++|. . .+...+.+.|+|||.+|++.++ .
T Consensus 90 lL~s~~~~vr~-~Aa~~Lg~ia~~n~~~~~~-vv~~g~l~~Ll~LL~-~-----~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 90 YLEAGAAGLRW-RAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLRLLD-R-----DACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp TTTCSSHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHH-H-----CSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCCHHHHH-HHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHHHc-c-----CCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 36666777777 9999999999999999865 679999999999887 2 2357899999999999998655 3
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CCh--HHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQL--PEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v--~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
.++++||+..++.++......+|+ .|.|+++|+|.+. +.. ..+ ..++|.|..+|.+.|.++.+.|++|+..|
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~----~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKV----KSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHH----HHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHH----HHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 688999999999999866666777 9999999999883 222 223 46999999999999999999999999999
Q ss_pred hhh
Q psy15268 155 SDR 157 (256)
Q Consensus 155 ~d~ 157 (256)
+.+
T Consensus 237 ~~~ 239 (296)
T 1xqr_A 237 VTD 239 (296)
T ss_dssp HTT
T ss_pred HhC
Confidence 977
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=144.70 Aligned_cols=189 Identities=13% Similarity=0.194 Sum_probs=145.1
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA----- 76 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~----- 76 (256)
|+..+++.+. .|+|+|.|++...++.... +++.|+||.|++.|. .++.++.+.++.+|++++..++
T Consensus 243 L~~~~~~v~~-~A~~aL~nLa~~~~~~~~~-v~~~g~v~~Lv~lL~-------~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 243 LGSPVDSVLF-HAITTLHNLLLHQEGAKMA-VRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp TTCSCHHHHH-HHHHHHHHHHHHSTTHHHH-HHHTTHHHHHHHGGG-------CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHhCCChhhHHH-HHHcCCHHHHHHHHh-------cCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 5666777777 9999999999998887754 668999999999876 2356777777777777663211
Q ss_pred ----------------------------------------chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcC
Q psy15268 77 ----------------------------------------GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCS 116 (256)
Q Consensus 77 ----------------------------------------~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr 116 (256)
..++++|++.+++.++.......++ +|+|++.|+|+
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~----~a~~~L~~L~~ 389 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ----NCLWTLRNLSD 389 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHH----HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHH----HHHHHHHHHhc
Confidence 2345666677777766544333444 99999999999
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCC
Q psy15268 117 KMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGG 196 (256)
Q Consensus 117 ~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~ 196 (256)
+.+. ...+..++|.|.++|.++|+++.+.|||+|.+|+.+ +++..+.+++.|.++.|+++|...+.
T Consensus 390 ~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~---------- 455 (780)
T 2z6g_A 390 AATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN---NYKNKMMVCQVGGIEALVRTVLRAGD---------- 455 (780)
T ss_dssp TCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHTTTHHHHHHHHHHHHTT----------
T ss_pred cchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHCCCHHHHHHHHHccCC----------
Confidence 8643 336789999999999999999999999999999986 34677889999999999999974211
Q ss_pred CCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 197 ANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
........++.|..|+..+++
T Consensus 456 ------------------~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 456 ------------------REDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp ------------------CHHHHHHHHHHHHHTTSSSTT
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCch
Confidence 124566788999999876654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=133.24 Aligned_cols=210 Identities=13% Similarity=0.107 Sum_probs=147.4
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---- 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---- 77 (256)
|...+++.+. .|+|+|.|+....++.... +++.|++|.|++.|. .. ....++.+.++++|+||+.+.+.
T Consensus 275 l~~~~~~v~~-~a~~~L~~L~~~~~~~~~~-~~~~~~v~~L~~ll~-~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 347 (529)
T 1jdh_A 275 LGSDDINVVT-CAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVL-RA----GDREDITEPAICALRHLTSRHQEAEMA 347 (529)
T ss_dssp TTCSCHHHHH-HHHHHHHHHTTTCHHHHHH-HHHTTHHHHHHHHHH-HH----TTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHhcCCHHHHHH-HHHcCChHHHHHHHH-cc----CCHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 4456677776 9999999999988888865 669999999999887 31 12379999999999999987543
Q ss_pred --hhhhcCcHHHHHHhhcccCc-ccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy15268 78 --SVFEAGGLASVLLFIKQHGH-SVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFAS 153 (256)
Q Consensus 78 --~Vl~~G~l~alL~~ldff~~-~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~ 153 (256)
.+++.|+++.++.++..... .+++ .|.|+++|++.+...... .=..++|.|.++|.+.|+++...|+|+++.
T Consensus 348 ~~~i~~~~~i~~L~~lL~~~~~~~v~~----~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 348 QNAVRLHYGLPVVVKLLHPPSHWPLIK----ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHTTCHHHHHHTTSTTCCHHHHH----HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHcCChhHHHHHhccccchHHHH----HHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 68899999999999986543 5566 999999999985322111 124689999999998888999888888887
Q ss_pred --hhhhcc----------------CCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccC
Q psy15268 154 --LSDRFT----------------RRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKAS 215 (256)
Q Consensus 154 --L~d~~~----------------~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 215 (256)
+.++.. ..++.-+.+.+.|.++.|+++|... .
T Consensus 424 ~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~------------------------------~ 473 (529)
T 1jdh_A 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP------------------------------I 473 (529)
T ss_dssp --CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS------------------------------C
T ss_pred hhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC------------------------------c
Confidence 444321 0111224577889999999999631 2
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhhhh
Q psy15268 216 SGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 216 ~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~~~ 253 (256)
+.........|..++. .++....+.+.+..+.|.+.+
T Consensus 474 ~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 474 ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGG
T ss_pred hHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHh
Confidence 3455667778888875 467777777777666666654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=128.96 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=148.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc----
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---- 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---- 77 (256)
|+..+++... .|+|+|.|+..+.++.... +++.|+||.|++.|. ..+ ...++.+.|+|+|+||+.+++.
T Consensus 408 L~~~d~~vr~-~A~~aL~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~-~~~----~~~~v~~~Al~aL~nL~~~~~~~~~~ 480 (780)
T 2z6g_A 408 LGSDDINVVT-CAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVL-RAG----DREDITEPAICALRHLTSRHQDAEMA 480 (780)
T ss_dssp TTCSCHHHHH-HHHHHHHHHTSSCHHHHHH-HHTTTHHHHHHHHHH-HHT----TCHHHHHHHHHHHHHTTSSSTTHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHHHH-ccC----CHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 4455666666 9999999999998888765 669999999999887 311 1248999999999999987553
Q ss_pred --hhhhcCcHHHHHHhhcccCc-ccchhhhhHHHHHHHHhcCCCCCCCCCh--HHHHHHHHHhhcCCC------------
Q psy15268 78 --SVFEAGGLASVLLFIKQHGH-SVHKDTLHSAMAVVSRLCSKMEPQDPQL--PEAVEALSLLLRHED------------ 140 (256)
Q Consensus 78 --~Vl~~G~l~alL~~ldff~~-~~qr~~l~~a~~~vsNlCr~~~~~~~~v--~~~lP~L~~lL~~~D------------ 140 (256)
.|..+|++..++.++..... .+++ .|.|+++|++++.... ..+ ..++|.|.++|.+.+
T Consensus 481 ~~~v~~~~~l~~L~~lL~~~~~~~v~~----~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~ 555 (780)
T 2z6g_A 481 QNAVRLHYGLPVVVKLLHPPSHWPLIK----ATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555 (780)
T ss_dssp HHHHHHTTCHHHHHHTTSTTCCHHHHH----HHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHcCCHHHHHHHhcCCChHHHHH----HHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence 68899999999999975443 4555 9999999999752111 122 357899988887654
Q ss_pred ----------HHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCcccc
Q psy15268 141 ----------THISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLAT 210 (256)
Q Consensus 141 ----------~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (256)
.++++.++.||.+|+.. ++.-..+.+.|.++.|+++|.+.
T Consensus 556 nq~~~~~~~~~~v~~~a~~aL~~La~~----~~~~~~l~~~~~i~~Lv~lL~~~-------------------------- 605 (780)
T 2z6g_A 556 QQQFVEGVRMEEIVEACTGALHILARD----IHNRIVIRGLNTIPLFVQLLYSP-------------------------- 605 (780)
T ss_dssp --CCSTTCCHHHHHHHHHHHHHHHTTS----HHHHHHHHHTCCHHHHHHGGGCS--------------------------
T ss_pred cchhhcccChHHHHHHHHHHHHHHhcC----hhhHHHHHHCCcHHHHHHHHcCC--------------------------
Confidence 34566677777777632 22334577899999999999631
Q ss_pred ccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHhhhh
Q psy15268 211 EAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 211 ~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l~~~l~~~~ 253 (256)
++.........|..|+ ..++....+.+.+..+.|.+++
T Consensus 606 ----~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 606 ----IENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp ----CHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGG
T ss_pred ----CHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHH
Confidence 2355566777888887 4577777777777555555543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=120.15 Aligned_cols=203 Identities=15% Similarity=0.182 Sum_probs=151.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+++.+. .|+|+|.|++...++.... +++.|+||.|++.|. .++.++...++.+|.+++...+ ..
T Consensus 107 L~~~~~~v~~-~A~~aL~nL~~~~~~~~~~-v~~~g~i~~Lv~lL~-------~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 107 LGSPVDSVLF-YAITTLHNLLLHQEGAKMA-VRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp TTCSSHHHHH-HHHHHHHHHHHHSTTHHHH-HHHTTHHHHHHHGGG-------CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCCHHHHH-HHHHHHHHHHhCcchhHHH-HHHCCChHHHHHHHC-------cCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5566777777 9999999999988777754 568999999999887 2245666666779999995333 46
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL-PEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v-~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.+.|++..++.++.... ..+....+..++.|+|......+..+ ..++|.|..++.+.++++++.++|+|..++..
T Consensus 178 i~~~g~v~~Lv~lL~~~~---~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYT---YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHTTHHHHHHHHHTTCC---CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHcCChHHHHHHHHcCC---hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 889999999999997543 22334488889999996421111122 35799999999999999999999999999976
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
..+ .+ ...|+++.|+++|.+. .+.........|+.|+.++++..
T Consensus 255 ~~~----~~--~~~~~i~~Lv~lL~~~------------------------------d~~v~~~a~~aL~~L~~~~~~~~ 298 (644)
T 2z6h_A 255 ATK----QE--GMEGLLGTLVQLLGSD------------------------------DINVVTCAAGILSNLTCNNYKNK 298 (644)
T ss_dssp CTT----CC--SCHHHHHHHHHHTTCS------------------------------CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred chh----hh--hhhhHHHHHHHHHcCC------------------------------CHHHHHHHHHHHHHHHcCCHHHH
Confidence 421 11 1238999999999631 23556678899999999999988
Q ss_pred HHHHhcChHHHHhhh
Q psy15268 238 SDLLHSDLPDAIGCP 252 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~ 252 (256)
..+++.+..+.|.++
T Consensus 299 ~~v~~~g~v~~Lv~l 313 (644)
T 2z6h_A 299 MMVCQVGGIEALVRT 313 (644)
T ss_dssp HHHHHTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHH
Confidence 888887744444443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-11 Score=106.75 Aligned_cols=149 Identities=12% Similarity=0.103 Sum_probs=108.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-chh
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-GSV 79 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-~~V 79 (256)
+|+..+++.+. .|||||.|+..++++.... +++.|+||.|++.|. . .++.++.||+..+|-|+|.... +..
T Consensus 60 lL~s~~~~vq~-~Aa~aL~nLa~~~~~nk~~-I~~~GaI~~Lv~lL~-~-----~~~~~~~e~a~~aL~nLS~~~~~k~~ 131 (233)
T 3tt9_A 60 LLKVQNEDVQR-AVCGALRNLVFEDNDNKLE-VAELNGVPRLLQVLK-Q-----TRDLETKKQITGLLWNLSSNDKLKNL 131 (233)
T ss_dssp GGGCCCHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHH-H-----CCCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred HHcCCCHHHHH-HHHHHHHHHHhCCHHHHHH-HHHcCCHHHHHHHHc-c-----CCCHHHHHHHHHHHHHHHcChhhHHH
Confidence 35667778888 9999999999999999866 679999999999886 3 2378999999999999998644 333
Q ss_pred hhcCcHHHHHHhhc--ccCcc---cch-------hhhhHHHHHHHHhcCCCCCCCCChH---HHHHHHHHhhcC------
Q psy15268 80 FEAGGLASVLLFIK--QHGHS---VHK-------DTLHSAMAVVSRLCSKMEPQDPQLP---EAVEALSLLLRH------ 138 (256)
Q Consensus 80 l~~G~l~alL~~ld--ff~~~---~qr-------~~l~~a~~~vsNlCr~~~~~~~~v~---~~lP~L~~lL~~------ 138 (256)
+-.+++.++...+- +.+.. .+| +++.+|++++.|++..-+.....++ ..+|.|..+++.
T Consensus 132 i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~ 211 (233)
T 3tt9_A 132 MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211 (233)
T ss_dssp HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhccc
Confidence 33467888887653 11110 010 3344999999999864211112343 367888888764
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q psy15268 139 EDTHISDAALRCFASLSDR 157 (256)
Q Consensus 139 ~D~~vv~~ac~als~L~d~ 157 (256)
.|.+.+|++.-++..|+-+
T Consensus 212 ~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 212 PDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHHHhh
Confidence 2778999999999998854
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-09 Score=105.48 Aligned_cols=182 Identities=14% Similarity=0.152 Sum_probs=132.1
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc----c
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA----G 77 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~----~ 77 (256)
|+..+++... .|||||+|+++ .|+.- ..+...|+|+.++.+|. . -++.+|+++|.|+|+|++.+++ +
T Consensus 43 L~S~~~~~r~-~A~~al~~l~~-~~~~~-~l~~~~~~v~~ll~~lL-~-----D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 43 LKSPDAKSRT-TAAGAIANIVQ-DAKCR-KLLLREQVVHIVLTETL-T-----DNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HSSSCCSHHH-HHHHHHHHHTT-SHHHH-HHHHHTTHHHHHHHTTT-T-----CSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCCCHHHHH-HHHHHHHHHHc-CcHHH-HHHHHcCCHHHHHHHHc-C-----CCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3456788888 99999999997 45544 44678999988877766 2 3479999999999999998865 3
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
.+++.|++.+++.++. +..+.+.+........+..-+..++ .+.+.++++|.+|+++
T Consensus 114 ~l~~~~il~~L~~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAK------------AVLETLTTSEPPFSKLLKAQQRLVW-----------DITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHTTHHHHHHHHHH------------HHHHHHHCBTTBGGGSCHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH------------hhHHHHhhhccccccccHHHHHHHH-----------HHHHHHHHHHHHHHhC
Confidence 5889999999999873 3344443333221111112222232 2456777888888887
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+++.++.+.+.|.++.|+.+|.+.. ..+......+++.|.+++..+++..
T Consensus 171 ---s~~~~~~v~~~~~l~~l~~~L~~~~---------------------------~~~~~v~~~a~~~L~~ls~dn~~~~ 220 (684)
T 4gmo_A 171 ---RDEIHEAVATKQTILRLLFRLISAD---------------------------IAPQDIYEEAISCLTTLSEDNLKVG 220 (684)
T ss_dssp ---CHHHHHHHHTCHHHHHHHHHHHHHC---------------------------CSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---CHHHHHHHHhcccHHHHHHHHHhcC---------------------------CCcHHHHHHHHHHHHHHhccCHHHH
Confidence 4567888999999999999996432 1234678889999999999999999
Q ss_pred HHHHhcCh
Q psy15268 238 SDLLHSDL 245 (256)
Q Consensus 238 ~~Ll~~~l 245 (256)
..+.+.+.
T Consensus 221 ~~i~~~~~ 228 (684)
T 4gmo_A 221 QAITDDQE 228 (684)
T ss_dssp HHHHTCCS
T ss_pred HHHHhcch
Confidence 98887653
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-08 Score=103.22 Aligned_cols=195 Identities=13% Similarity=0.171 Sum_probs=141.0
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhc-cccchhhh--
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICT-REAGSVFE-- 81 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~-d~~~~Vl~-- 81 (256)
.++..+- .|+|+|.|+. ..++.- ..++..|++|.|++.|. .-. .......+.|.+||.+|.- ..|..++.
T Consensus 469 ~s~~~re-~A~~aL~nLS-~d~~~R-~~lvqqGal~~LL~lL~-s~~---~~~~~~k~~AA~ALArLlis~np~~~f~~~ 541 (778)
T 3opb_A 469 LSPNCKQ-QVVRIIYNIT-RSKNFI-PQLAQQGAVKIILEYLA-NKQ---DIGEPIRILGCRALTRMLIFTNPGLIFKKY 541 (778)
T ss_dssp SCHHHHH-HHHHHHHHHH-TSGGGH-HHHHHTTHHHHHHHHTT-CC------CCHHHHHHHHHHHHHHHTSCHHHHSSSS
T ss_pred CCHHHHH-HHHHHHHHHc-CCHHHH-HHHHHCCCHHHHHHHHh-cCC---CcchHHHHHHHHHHHHHHhcCCHHHHcCCC
Confidence 3444444 9999999996 456555 44679999999999887 321 0001378999999999974 34555543
Q ss_pred --cCcHHHHHHhhcccC-cc------------c-chhhhhHHHHHHHHhcCCCCC--CC--C-ChH--HHHHHHHHhhcC
Q psy15268 82 --AGGLASVLLFIKQHG-HS------------V-HKDTLHSAMAVVSRLCSKMEP--QD--P-QLP--EAVEALSLLLRH 138 (256)
Q Consensus 82 --~G~l~alL~~ldff~-~~------------~-qr~~l~~a~~~vsNlCr~~~~--~~--~-~v~--~~lP~L~~lL~~ 138 (256)
.|++++++..+.+.+ .. . +. .|+.++.|++..-+. .+ . .++ .++|.|.++|.+
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f----eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY----EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH----HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHH----HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 399999999998422 11 1 33 899999999986422 11 2 455 499999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCCCc-cchhccc------cHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccc
Q psy15268 139 EDTHISDAALRCFASLSDRFTRRGVDP-APLAQHG------LASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATE 211 (256)
Q Consensus 139 ~D~~vv~~ac~als~L~d~~~~~~~~i-~~l~~~g------lv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
+...|...|||+++.|+.. ++.+ +.+++.+ =++-|++|+.. +
T Consensus 618 ~n~~VrrAA~elI~NL~~~----~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~-------------------------- 666 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMSH----PLTIAAKFFNLENPQSLRNFNILVKLLQL-S-------------------------- 666 (778)
T ss_dssp SSHHHHHHHHHHHHHHHTS----GGGTGGGTSCCSSHHHHHHHHHHHHGGGC-S--------------------------
T ss_pred CCHHHHHHHHHHHHHHhCC----cHHHHHHHHhhcCchhhccHHHHHHHHcC-C--------------------------
Confidence 9999999999999999964 3444 5666544 26678888853 1
Q ss_pred cccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 212 AKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 212 ~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
...+-......|+.++.++|.+++.+++..
T Consensus 667 ---D~~~r~AAagALAnLts~~~~ia~~ll~~~ 696 (778)
T 3opb_A 667 ---DVESQRAVAAIFANIATTIPLIAKELLTKK 696 (778)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred ---CHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence 234556777899999999999999999873
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=94.90 Aligned_cols=165 Identities=10% Similarity=0.094 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHhccCc---hhhhHHHHhC-CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhh
Q psy15268 8 ENVLEVTARAMTYYLDVSA---ECTRRIVAID-GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVF 80 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p---~~t~~ivv~~-gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl 80 (256)
..+.++|++||||+++... +..+..++.+ |++|.|.+.|. . ....+.+.|.|++.|++.+... .++
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s-----~n~~VrrAA~elI~NL~~~~e~i~~k~~ 645 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--D-----ENVPLQRSTLELISNMMSHPLTIAAKFF 645 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--C-----SSHHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--C-----CCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 3545599999999999762 3333334575 99999999776 2 2678999999999999975321 344
Q ss_pred hcC------cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C--ChHHHHHHHHHhhcC--CCHHHHHHHHH
Q psy15268 81 EAG------GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P--QLPEAVEALSLLLRH--EDTHISDAALR 149 (256)
Q Consensus 81 ~~G------~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~--~v~~~lP~L~~lL~~--~D~~vv~~ac~ 149 (256)
..+ ++..++.+++.-....|| .|.|+++|++..-+... . .-.+.++.|..+++. +|++++..+.-
T Consensus 646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~----AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~ 721 (778)
T 3opb_A 646 NLENPQSLRNFNILVKLLQLSDVESQR----AVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLM 721 (778)
T ss_dssp CCSSHHHHHHHHHHHHGGGCSCHHHHH----HHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhcCchhhccHHHHHHHHcCCCHHHHH----HHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHH
Confidence 322 478899999876777888 99999999976543322 1 234688888888876 89999999999
Q ss_pred HHHHhhhhc--cCCCCCccchh-ccccHHHHHHHhcc
Q psy15268 150 CFASLSDRF--TRRGVDPAPLA-QHGLASELLIRLSN 183 (256)
Q Consensus 150 als~L~d~~--~~~~~~i~~l~-~~glv~~Lv~LL~~ 183 (256)
+|..+++-. ..+.+.+..+. +..+...|.++|..
T Consensus 722 ~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~ 758 (778)
T 3opb_A 722 LFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKR 758 (778)
T ss_dssp HHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSS
T ss_pred HHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhC
Confidence 999999621 12347888888 56799999999964
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=92.43 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=118.1
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch---
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS--- 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~--- 78 (256)
|.+.+|.... .|++||+++....|+... +.|.+|.|.++|. .++..|...|+++|+.|+.+.++.
T Consensus 130 L~d~~~~VRk-~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~-------d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 130 LKDEDPYVRK-TAAVCVAKLHDINAQMVE----DQGFLDSLRDLIA-------DSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp SSCSCHHHHH-HHHHHHHHHHHSSCCCHH----HHHHHHHHHHTTS-------CSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred cCCCChHHHH-HHHHHHHHHHhhChhhcc----cccHHHHHHHHhC-------CCChhHHHHHHHHHHHHHhhCCCccch
Confidence 4556777777 999999999999887552 4578899998776 236789999999999999987743
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
.+..+.+..++..+.....-.|. ..+-+++++| |.+ ...++++|.+..+|+|.|+.|+-.|++++.++.+.
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~----~il~~l~~l~----~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQI----FILDCLSNYN----PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHH----HHHHHHHTSC----CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred hccHHHHHHHHHcCCCCCchHHH----HHHHHHHHhC----CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 34456677788877665666677 5566777777 333 37889999999999999999999999999999875
Q ss_pred ccCCCCCccchhccccHHHHHHHh
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL 181 (256)
...+++.++.++ ..+.+.|+.|+
T Consensus 270 ~~~~~~~~~~~~-~~~~~~L~~L~ 292 (591)
T 2vgl_B 270 LPKDSDYYNMLL-KKLAPPLVTLL 292 (591)
T ss_dssp CCBTTBSHHHHH-HHTHHHHHHHT
T ss_pred cCCCHHHHHHHH-HHHHHHHHHHh
Confidence 433345555433 34455555554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-05 Score=64.04 Aligned_cols=126 Identities=20% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.+++... .|+++|..+-+ .+++|.|.+.|. .++.++...++++|+++...
T Consensus 23 L~~~~~~vr~-~A~~~L~~~~~------------~~~~~~L~~~l~-------~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 23 LQDDSYYVRR-AAAYALGKIGD------------ERAVEPLIKALK-------DEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp TTCSCHHHHH-HHHHHHHHHCC------------GGGHHHHHHHTT-------CSSHHHHHHHHHHHHHHCCG-------
T ss_pred hcCCCHHHHH-HHHHHHHhcCC------------hhHHHHHHHHHc-------CCCHHHHHHHHHHHHhhCCH-------
Confidence 5667788777 99999987643 256799998776 33688999999999998532
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
+.+..++..++.....+++ .|+|.+.++.. .+++|.|..+|.++|+.|...|++++.++.+
T Consensus 76 -~~~~~L~~~l~d~~~~vr~----~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 76 -RAVEPLIKALKDEDGWVRQ----SAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHH----HHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred -HHHHHHHHHHcCCCHHHHH----HHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 4677788888765556666 99999998753 3578888899999999999999999999853
Q ss_pred CCCccchhccccHHHHHHHhc
Q psy15268 162 GVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.+.++.|.++|.
T Consensus 137 ---------~~~~~~L~~~l~ 148 (201)
T 3ltj_A 137 ---------ERAVEPLIKALK 148 (201)
T ss_dssp ---------GGGHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHc
Confidence 356788888885
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.5e-06 Score=81.63 Aligned_cols=158 Identities=9% Similarity=0.130 Sum_probs=107.8
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-chhhh--c
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-GSVFE--A 82 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-~~Vl~--~ 82 (256)
++.... .|+++|.+++...++.. ....+|.+.+.|. .+.-.+.|.++++|+.|+.... ..+-. .
T Consensus 344 ~~~~r~-~a~~~L~~l~~~~~~~~-----~~~l~~~l~~~l~-------~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~ 410 (861)
T 2bpt_A 344 DWNVSM-SAGACLQLFAQNCGNHI-----LEPVLEFVEQNIT-------ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH 410 (861)
T ss_dssp CCHHHH-HHHHHHHHHHHHHGGGG-----HHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred cCcHHH-HHHHHHHHHHHHccHhH-----HHHHHHHHHHHcC-------CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344555 89999999988766432 1133455555444 2357899999999999985433 22211 2
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCC---CCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ---DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~---~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
..+..++..+......+.. .+.|++.++|+...+. ..++.+++|.|...++.+ +++...+||++.++++++.
T Consensus 411 ~il~~l~~~l~d~~~~vr~----~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKE----TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHH----HHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcHHHHH----HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence 3455566666544344444 8999999999876442 348999999999988765 9999999999999999864
Q ss_pred C-CCCCccchhccccHHHHHHHhc
Q psy15268 160 R-RGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 160 ~-~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
. .++.+...+ ..+++.|++++.
T Consensus 486 ~~~~~~l~~~~-~~il~~L~~~l~ 508 (861)
T 2bpt_A 486 EATPSPIYNFY-PALVDGLIGAAN 508 (861)
T ss_dssp SSSSCGGGGGH-HHHHHHHHHHHT
T ss_pred cccchhhHHHH-HHHHHHHHHHHh
Confidence 1 124454444 367888888885
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.1e-06 Score=81.99 Aligned_cols=158 Identities=11% Similarity=0.125 Sum_probs=111.2
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-chh--hhc
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-GSV--FEA 82 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-~~V--l~~ 82 (256)
+...-. .|+++|..+++..++.. ....+|.+.+.|. .+.-.+.+.++++|+.|+...+ +.+ +-.
T Consensus 341 ~~~~r~-~a~~~l~~l~~~~~~~~-----~~~~l~~l~~~l~-------~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~ 407 (876)
T 1qgr_A 341 DWNPCK-AAGVCLMLLATCCEDDI-----VPHVLPFIKEHIK-------NPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 407 (876)
T ss_dssp CCCHHH-HHHHHHHHHHHHHGGGG-----HHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHHHCcHhh-----HHHHHHHHHHHcc-------CCChHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 334444 88899999988777432 1245566666554 2367899999999999987654 221 223
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCC---CCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ---DPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~---~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
..+..++..++.....++. .|.|++.++|...++. .+++.+++|.|.+.|.++ ++|.+.+||++.++++.+.
T Consensus 408 ~~l~~l~~~l~d~~~~vr~----~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRD----TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHH----HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH----HHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 4567777777654445555 9999999999987552 358999999999998774 9999999999999998764
Q ss_pred C-----------CCCCccchhccccHHHHHHHhc
Q psy15268 160 R-----------RGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 160 ~-----------~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+ ..+.+...+ ..+++.|++++.
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~ 515 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSF-ELIVQKLLETTD 515 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTT
T ss_pred hccccccccccccchhhhHhH-HHHHHHHHHHHh
Confidence 1 112344433 357777777775
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.6e-06 Score=82.45 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=112.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|.+.++.... .+|++++.|+...+... -.+.+|.|++.+. .+..++.|.++++|+.|+.+.+...-+
T Consensus 99 l~~~~~~vr~-~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~-------~~~~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 99 IGDSSPLIRA-TVGILITTIASKGELQN-----WPDLLPKLCSLLD-------SEDYNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp TTCSSHHHHH-HHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHS-------CSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHHHhcCccc-----cHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHhHHHhch
Confidence 4455666666 99999999998652211 3466799998776 336789999999999999987754321
Q ss_pred -------cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy15268 82 -------AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFAS 153 (256)
Q Consensus 82 -------~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~ 153 (256)
.+.+..+++++......++. .|++++.++++..+..- ..+.+++|.|..+++.+|+++...||+||.+
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~----~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRS----HAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVM 241 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHH----HHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 22344445554433344444 89999998887643222 3788999999999999999999999999999
Q ss_pred hhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 154 LSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 154 L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+++.+ ++.+...++ ++++-+++++.
T Consensus 242 l~~~~---~~~~~~~l~-~l~~~l~~~~~ 266 (852)
T 4fdd_A 242 LLEVR---MDRLLPHMH-NIVEYMLQRTQ 266 (852)
T ss_dssp HHHHC---HHHHGGGHH-HHHHHHHHHHT
T ss_pred HHHhC---HHHHHHHHH-HHHHHHHHHcc
Confidence 99874 334444332 46666666654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=68.85 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=91.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.++.... .|+|+|.++-+ .+++|.|.+.|. .++.++.+.++|+|+++.....
T Consensus 32 L~~~~~~vr~-~A~~~L~~~~~------------~~~~~~L~~~l~-------d~~~~vR~~A~~aL~~l~~~~~----- 86 (280)
T 1oyz_A 32 LDDHNSLKRI-SSARVLQLRGG------------QDAVRLAIEFCS-------DKNYIRRDIGAFILGQIKICKK----- 86 (280)
T ss_dssp TTCSSHHHHH-HHHHHHHHHCC------------HHHHHHHHHHHT-------CSSHHHHHHHHHHHHHSCCCTT-----
T ss_pred HHcCCHHHHH-HHHHHHHccCC------------chHHHHHHHHHc-------CCCHHHHHHHHHHHHHhccccc-----
Confidence 5566777777 99999998852 135688888776 3367899999999999864321
Q ss_pred cCcHHHHHHh-----hcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 82 AGGLASVLLF-----IKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 82 ~G~l~alL~~-----ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
.+..++.+ +......+++ .|.|.+.+++.+.+ ....+++|.|..+++++|+.|...|++++.++.+
T Consensus 87 --~~~~l~~~L~~~~~~d~~~~vr~----~a~~aL~~l~~~~~---~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 87 --CEDNVFNILNNMALNDKSACVRA----TAIESTAQRCKKNP---IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp --THHHHHHHHHHHHHHCSCHHHHH----HHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred --cchHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHhccCC---cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 12223332 2323344555 89999999985432 2456788888888999999999999999987754
Q ss_pred hccCCCCCccchhccccHHHHHHHhc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
. +.++.|+++|.
T Consensus 158 ~--------------~~~~~L~~~l~ 169 (280)
T 1oyz_A 158 K--------------ATIPLLINLLK 169 (280)
T ss_dssp ---------------CCHHHHHHHHT
T ss_pred H--------------HHHHHHHHHHc
Confidence 2 35666777664
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.9e-05 Score=62.09 Aligned_cols=126 Identities=20% Similarity=0.187 Sum_probs=94.2
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.++.... .|+++|..+-+ .+++|.|.+.|. .++.++...++++|+++..
T Consensus 28 L~~~~~~vR~-~A~~~L~~~~~------------~~~~~~L~~~l~-------~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 28 LQDDSYYVRR-AAAYALGKIGD------------ERAVEPLIKALK-------DEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp TTCSSHHHHH-HHHHHHHHHCC------------GGGHHHHHHHTT-------CSCHHHHHHHHHHHHHHCC--------
T ss_pred HcCCCHHHHH-HHHHHHHHhCC------------ccHHHHHHHHHc-------CCCHHHHHHHHHHHHhhCC--------
Confidence 4556666666 88888876543 356788888776 2368899999999999853
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
.+.+..++..++.....+++ .|+|.+.++.. .+++|.|..+|.++|+.|...|++++.++.+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~----~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQ----SAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHH----HHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHcCCCHHHHH----HHHHHHHHhCc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 34567777887765555666 88999888753 3577888889999999999999999998843
Q ss_pred CCCccchhccccHHHHHHHhc
Q psy15268 162 GVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.+.++.|.++|.
T Consensus 142 ---------~~~~~~L~~~l~ 153 (211)
T 3ltm_A 142 ---------ERAVEPLIKALK 153 (211)
T ss_dssp ---------GGGHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHc
Confidence 246777888874
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=86.92 Aligned_cols=140 Identities=9% Similarity=-0.011 Sum_probs=105.6
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhh
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVF 80 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl 80 (256)
+.++.... .|+|+|.+|+++.++.... ...+.+|.+++.|. .+...+++.+.|+|++++...+ ...+
T Consensus 370 ~~~~~~R~-aa~~alg~i~~~~~~~~~~--~l~~~l~~l~~~l~-------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 439 (852)
T 4fdd_A 370 HHEWVVKE-SGILVLGAIAEGCMQGMIP--YLPELIPHLIQCLS-------DKKALVRSITCWTLSRYAHWVVSQPPDTY 439 (852)
T ss_dssp CSSHHHHH-HHHHHHHHTTTTTHHHHGG--GHHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHTHHHHHHSCTTTT
T ss_pred CCCHHHHH-HHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 44555555 9999999999999987643 35678899998776 3368999999999999998643 2344
Q ss_pred hcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 81 EAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 81 ~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
-.+.+..++..+......+++ .|.|++.|+|.+.++.- +++.+++|.|..+++..+.+.+.-+..|+..+++.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~----~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~ 513 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQE----AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS 513 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHH----HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 557778888888655566777 99999999998765433 48999999999998766666655556666666544
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=67.09 Aligned_cols=131 Identities=8% Similarity=0.024 Sum_probs=90.5
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGG 84 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~ 84 (256)
.++.... .|+|+|.++..+.|.... .++|.|.+.|. .++.++..+++++|+++.. .+.
T Consensus 103 ~~~~vr~-~a~~aL~~l~~~~~~~~~------~~~~~L~~~l~-------d~~~~vR~~a~~aL~~~~~--------~~~ 160 (280)
T 1oyz_A 103 KSACVRA-TAIESTAQRCKKNPIYSP------KIVEQSQITAF-------DKSTNVRRATAFAISVIND--------KAT 160 (280)
T ss_dssp SCHHHHH-HHHHHHHHHHHHCGGGHH------HHHHHHHHHTT-------CSCHHHHHHHHHHHHTC-----------CC
T ss_pred CCHHHHH-HHHHHHHHHhccCCcccH------HHHHHHHHHhh-------CCCHHHHHHHHHHHHhcCC--------HHH
Confidence 3444445 677777777655543332 34577777665 3367888888888888743 246
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCC
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVD 164 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~ 164 (256)
+..++..++.....+.+ .|.|.+.++... -.+++|.|..+|+.+|+.|...|++++.++.+
T Consensus 161 ~~~L~~~l~d~~~~vr~----~a~~aL~~~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------- 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRN----WAAFAININKYD-------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------- 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHH----HHHHHHHHHTCC-------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHcCCCHHHHH----HHHHHHHhhccC-------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------
Confidence 77888888765555566 888988887421 24778888889998999999999999988752
Q ss_pred ccchhccccHHHHHHHhc
Q psy15268 165 PAPLAQHGLASELLIRLS 182 (256)
Q Consensus 165 i~~l~~~glv~~Lv~LL~ 182 (256)
.+.++.|+++|.
T Consensus 222 ------~~~~~~L~~~l~ 233 (280)
T 1oyz_A 222 ------KRVLSVLCDELK 233 (280)
T ss_dssp ------GGGHHHHHHHHT
T ss_pred ------HhhHHHHHHHhc
Confidence 356777888775
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=78.32 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=112.4
Q ss_pred CCCCchhHHHHHHHHHHHHhccCc-hhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchh--
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSA-ECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSV-- 79 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p-~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~V-- 79 (256)
.+.++.... .|+++|..++++.. +..... ....+|.+++.|. .++..+++.++|+|+.++...+..+
T Consensus 379 ~~~~~~~r~-~a~~~l~~i~~~~~~~~~~~~--l~~il~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 379 TADNWRNRE-AAVMAFGSIMDGPDKVQRTYY--VHQALPSILNLMN-------DQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp TCSSHHHHH-HHHHHHHHTSSSSCHHHHHHH--HHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred CCCChhHHH-HHHHHHHHHHcCCCHHHHHHH--HHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 344555444 89999999999874 554332 2357788888765 2378899999999999998644322
Q ss_pred --hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCC---CCC--CChHHHHHHHHHhhcCCC--HHHHHHHHHH
Q psy15268 80 --FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKME---PQD--PQLPEAVEALSLLLRHED--THISDAALRC 150 (256)
Q Consensus 80 --l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~---~~~--~~v~~~lP~L~~lL~~~D--~~vv~~ac~a 150 (256)
.-...+..++..++.. ..+++ .|.|++.++|.+.. +.. +++.+++|.|..++.+.| +++...++.+
T Consensus 449 ~~~~~~~l~~l~~~l~~~-~~v~~----~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH-PKVAT----NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC-HHHHH----HHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-hHHHH----HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 2334566677676542 34455 89999999998754 222 478999999999998766 7899999999
Q ss_pred HHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 151 FASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 151 ls~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+..++.... +.....++ .+++.+++.|.
T Consensus 524 l~~l~~~~~---~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 524 LTTMVEYAT---DTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHCC---GGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHcc---hhhHHHHH-HHHHHHHHHHH
Confidence 999998752 33333332 45666666664
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=76.30 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=86.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCc-hhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchh-
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSA-ECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSV- 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p-~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~V- 79 (256)
|.+.++.... .|+++|.+++++.+ +.... ...+.+|.+.+.|. .+...+.+.|+|+|++++...+..+
T Consensus 375 l~~~~~~~r~-~a~~~l~~i~~~~~~~~~~~--~~~~~l~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 375 IKNPDWRYRD-AAVMAFGCILEGPEPSQLKP--LVIQAMPTLIELMK-------DPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp TTCSSHHHHH-HHHHHHHHTSSSSCHHHHHH--HHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred ccCCChHHHH-HHHHHHHHHHcCCCHHHHHH--HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhCchhcc
Confidence 3445666666 99999999999887 44432 23567899988776 2367899999999999998765432
Q ss_pred ---hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCC-------------CCC--CChHHHHHHHHHhhcCC
Q psy15268 80 ---FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKME-------------PQD--PQLPEAVEALSLLLRHE 139 (256)
Q Consensus 80 ---l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~-------------~~~--~~v~~~lP~L~~lL~~~ 139 (256)
.-...+..++..++.. ..++. .|.|++.++|.... ... +++.+++|.|...+...
T Consensus 445 ~~~~l~~~l~~l~~~l~~~-~~v~~----~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 517 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE-PRVAS----NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP 517 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC-HHHHH----HHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHcCC-HHHHH----HHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCc
Confidence 2235566666666542 44455 89999999987532 111 47889999998887653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.5e-05 Score=61.52 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=89.9
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.++.... .|+++|.++-+ .+++|.|.+.|. .++.++...++++|+++...
T Consensus 59 l~~~~~~vr~-~a~~aL~~~~~------------~~~~~~L~~~l~-------~~~~~vr~~a~~aL~~~~~~------- 111 (211)
T 3ltm_A 59 LKDEDAWVRR-AAADALGQIGD------------ERAVEPLIKALK-------DEDGWVRQSAAVALGQIGDE------- 111 (211)
T ss_dssp TTCSCHHHHH-HHHHHHHHHCC------------GGGHHHHHHHTT-------CSSHHHHHHHHHHHHHHCCG-------
T ss_pred HcCCCHHHHH-HHHHHHHhhCC------------HHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCcH-------
Confidence 4556677777 99999988743 356788988776 34788999999999998542
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+.+..++.+++.....+++ .|++.+.++.. .+++|.|..+++++|+.|...|++++.++.+
T Consensus 112 -~~~~~L~~~l~d~~~~vr~----~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 112 -RAVEPLIKALKDEDWFVRI----AAAFALGEIGD---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp -GGHHHHHHHTTCSSHHHHH----HHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHHHhCCCHHHHH----HHHHHHHHcCC---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 4567788888765566666 99999999842 3578999999999999999999999999854
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00016 Score=65.54 Aligned_cols=160 Identities=12% Similarity=0.115 Sum_probs=111.9
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhC-CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc------
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAID-GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA------ 76 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~-gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~------ 76 (256)
+.+++..- .++++|..+++..++.... . .. +.+|.+...+. ..+.+++.++++.+..++....
T Consensus 228 ~~~~~vr~-~~~~~l~~l~~~~~~~~~~-~-~~~~l~~~~~~~~~-------~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 228 CPDTRVRV-AALQNLVKIMSLYYQYMET-Y-MGPALFAITIEAMK-------SDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp CSSHHHHH-HHHHHHHHHHHHCGGGCTT-T-TTTTHHHHHHHHHH-------CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555 8999999999988876533 1 23 67787777665 2368999999999999976520
Q ss_pred --------------chhhh---cCcHHHHHHhhccc-----C--cccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHH
Q psy15268 77 --------------GSVFE---AGGLASVLLFIKQH-----G--HSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEAL 132 (256)
Q Consensus 77 --------------~~Vl~---~G~l~alL~~ldff-----~--~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L 132 (256)
...++ ...++.++..+... . ....+ .|.+.+..+|...+ +..+..++|.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~----~a~~~L~~l~~~~~--~~~~~~~~~~l 371 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK----AAGVCLMLLATCCE--DDIVPHVLPFI 371 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH----HHHHHHHHHHHHTT--TTHHHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH----HHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 11221 22344444555211 1 12233 78888888888764 45778899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 133 SLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 133 ~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
...+++.|.++.+.|+++|..++++.. ++.++..+ .++++.++++|.
T Consensus 372 ~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~~l-~~~~~~l~~~l~ 418 (462)
T 1ibr_B 372 KEHIKNPDWRYRDAAVMAFGCILEGPE--PSQLKPLV-IQAMPTLIELMK 418 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSC--TTTTCTTT-TTHHHHHHHGGG
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCc--HHHHHHHH-HHHHHHHHHHhc
Confidence 999999999999999999999999853 23444444 478899999885
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.9e-05 Score=60.66 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=87.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.++.... .|+++|.++-+ .+++|.|.+.|. .++.++...++|+|+++...
T Consensus 54 l~~~~~~vr~-~a~~~L~~~~~------------~~~~~~L~~~l~-------d~~~~vr~~a~~aL~~~~~~------- 106 (201)
T 3ltj_A 54 LKDEDAWVRR-AAADALGQIGD------------ERAVEPLIKALK-------DEDGWVRQSAAVALGQIGDE------- 106 (201)
T ss_dssp TTCSSHHHHH-HHHHHHHHHCC------------GGGHHHHHHHTT-------CSSHHHHHHHHHHHHHHCCG-------
T ss_pred HcCCCHHHHH-HHHHHHHhhCC------------HHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCcH-------
Confidence 4566777777 99999987742 246788888776 23788999999999998542
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
..+..++.+++.....+++ .|.|.+.++.. .+++|.|..++.++|+.|...|++++.++.+
T Consensus 107 -~~~~~L~~~l~d~~~~vr~----~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 107 -RAVEPLIKALKDEDWFVRI----AAAFALGEIGD---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHH----HHHHHHHHHTC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHHHcCCCHHHHH----HHHHHHHHhCC---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3567777777655555666 88999988742 3578888888999999999999999999864
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.5e-06 Score=65.99 Aligned_cols=111 Identities=10% Similarity=0.094 Sum_probs=82.9
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.+++... .|+|+|.++-+ .++|.|++.|. .++.++...++|+|+++...
T Consensus 21 L~~~~~~vR~-~A~~~L~~~~~-------------~~~~~L~~~L~-------d~~~~vR~~A~~aL~~~~~~------- 72 (131)
T 1te4_A 21 MADENKWVRR-DVSTALSRMGD-------------EAFEPLLESLS-------NEDWRIRGAAAWIIGNFQDE------- 72 (131)
T ss_dssp CCSSCCCSSS-SCCSSTTSCSS-------------TTHHHHHHGGG-------CSCHHHHHHHHHHHGGGCSH-------
T ss_pred hcCCCHHHHH-HHHHHHHHhCc-------------hHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCCH-------
Confidence 4455566665 66666654421 24688888776 24789999999999998532
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASL 154 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L 154 (256)
+.+..++..++.....+.+ .|.|.+.++.. .+++|.|..+++.+|+.|...|++++.+|
T Consensus 73 -~a~~~L~~~L~d~~~~VR~----~A~~aL~~~~~---------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -RAVEPLIKLLEDDSGFVRS----GAARSLEQIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -HHHHHHHHHHHHCCTHHHH----HHHHHHHHHCS---------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -HHHHHHHHHHcCCCHHHHH----HHHHHHHHhCc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3477778888766666677 99999999862 57899999999999999999999998653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=70.55 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=101.6
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
..+++..- .+.-++.++++..||... -++..|.+-|. .++..+..-|+.+|++|.... +...
T Consensus 60 s~~~~~Kr-l~yl~l~~~~~~~~e~~~------l~~n~l~kdL~-------~~n~~ir~~AL~~L~~i~~~~----~~~~ 121 (591)
T 2vgl_B 60 TDNLELKK-LVYLYLMNYAKSQPDMAI------MAVNSFVKDCE-------DPNPLIRALAVRTMGCIRVDK----ITEY 121 (591)
T ss_dssp SSCHHHHH-HHHHHHHHHHHHSHHHHH------TTHHHHGGGSS-------SSSHHHHHHHHHHHHTCCSGG----GHHH
T ss_pred CCCHHHHH-HHHHHHHHHcccCchHHH------HHHHHHHHHcC-------CCCHHHHHHHHHHHHcCChHH----HHHH
Confidence 34555555 666677777776666542 23455555444 346788888999999985322 2233
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLP--EAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~--~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
.+.++...+......+.+ +|.+.+.++++.. | ..+. +++|.|..+|..+|+.|+..|.++|..++.. +
T Consensus 122 l~~~l~~~L~d~~~~VRk----~A~~al~~i~~~~-p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~---~ 191 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRK----TAAVCVAKLHDIN-A--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES---H 191 (591)
T ss_dssp HHHHHHHHSSCSCHHHHH----HHHHHHHHHHHSS-C--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHcCCCChHHHH----HHHHHHHHHHhhC-h--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh---C
Confidence 456677888766677777 9999999999853 2 2444 6999999999999999999999999999865 2
Q ss_pred CCCccchhccccHHHHHHHhc
Q psy15268 162 GVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 162 ~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++....-...+.+++|++.|.
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHH
T ss_pred CCccchhccHHHHHHHHHcCC
Confidence 222111122355666666653
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.75 E-value=6.6e-05 Score=74.93 Aligned_cols=203 Identities=12% Similarity=0.145 Sum_probs=143.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHH-hCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVA-IDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-- 77 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv-~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-- 77 (256)
+|++.++...+ -|.++|+.++...|+.++..+. ..++||.|++.|. .+..-+.-.++-.|-.++++++.
T Consensus 130 lL~~~df~vR~-~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~-------d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 130 LLEEFDFHVRW-PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA-------DSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HTTCCCHHHHH-HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG-------CSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCccHHHHH-HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh-------CchHHHHHHHHHHHHHHhcCCHHHH
Confidence 36777888888 9999999999999997765555 5599999999887 22578999999999999999874
Q ss_pred -hhhhcCcHHHHHHhhcccCc----ccchhhhhHHHHHHHHhcCCCCCCC-CChH--HHHHHHHHhhcCCCH------HH
Q psy15268 78 -SVFEAGGLASVLLFIKQHGH----SVHKDTLHSAMAVVSRLCSKMEPQD-PQLP--EAVEALSLLLRHEDT------HI 143 (256)
Q Consensus 78 -~Vl~~G~l~alL~~ldff~~----~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~--~~lP~L~~lL~~~D~------~v 143 (256)
.|--+|+.+.+...|+.-+. -+.. -++.++.|+.|+- +.. .+++ .++|.|..+|..+++ +.
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~----DCL~ll~nLLr~N-~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk 276 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVE----DCLILLQNLLKNN-NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQK 276 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHH----HHHHHHHHHHTTC-HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHH----HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHhCCCccccccHHHH
Confidence 45566999999999985432 2233 6888999999984 333 2333 477888888765432 23
Q ss_pred HHH---HHHHHHHhhhhccC---CCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcc
Q psy15268 144 SDA---ALRCFASLSDRFTR---RGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSG 217 (256)
Q Consensus 144 v~~---ac~als~L~d~~~~---~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 217 (256)
+.+ +..++.-++.+... ....=..+.++|+++.|++++... + .+..
T Consensus 277 ~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~-~---------------------------~p~~ 328 (651)
T 3grl_A 277 VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT-G---------------------------VPAD 328 (651)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS-S---------------------------CCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC-C---------------------------CCHH
Confidence 333 44444444443110 011234678899999999999742 1 2335
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 218 SVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 218 ~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
.....++.++.++||++..-..+-+-+
T Consensus 329 i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 329 ILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 567889999999999998777665543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.73 E-value=6.7e-05 Score=70.33 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=102.9
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEA 82 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~ 82 (256)
++.+++... .|+++|..+++..+... .....+|.|.+.+. ..+.++.+.|+++|+.++...+..-+..
T Consensus 174 ~d~~~~VR~-~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 241 (588)
T 1b3u_A 174 SDDTPMVRR-AAASKLGEFAKVLELDN----VKSEIIPMFSNLAS-------DEQDSVRLLAVEACVNIAQLLPQEDLEA 241 (588)
T ss_dssp TCSCHHHHH-HHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHT-------CSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHHHHHhcHHh----HHHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 345666666 99999999998877543 13567888887665 2367899999999999988766544444
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
..+..+..+++.....+.+ .|...+.+++...++ +....+++|.+.++++.+|++|...++++|..+++...
T Consensus 242 ~~~~~l~~~~~d~~~~vR~----~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRY----MVADKFTELQKAVGP-EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHH----HHHHTHHHHHHHHCH-HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHccCCCHHHHH----HHHHHHHHHHHHhCc-ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 5566666666544444555 777888888765422 12457789999999999999999999999999998763
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00026 Score=64.20 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=96.0
Q ss_pred CCchhHHHHHHHHHHHHhccCch-----------------hhhHHH--HhCCcHHHHHHHhhcccCCC-CCCcHHHHHHH
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAE-----------------CTRRIV--AIDGAMKAICSRLSLGAGIA-SRTSKDLAEQC 64 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~-----------------~t~~iv--v~~gAVp~L~~~L~~~i~~~-~~~~~DlaEQa 64 (256)
.+++... .|.+.+.++.+...+ ....++ .-...+|.+++.|. ..+-. +...-.+++.+
T Consensus 271 ~~~~v~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 271 DIDEVAL-QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT-KQDENDDDDDWNPCKAA 348 (462)
T ss_dssp SSHHHHH-HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT-CCCSSCCTTCCSHHHHH
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH-hcccccccccchHHHHH
Confidence 3445555 899999888875311 000001 01335677777665 32100 01123588889
Q ss_pred HHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHH
Q psy15268 65 IKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTH 142 (256)
Q Consensus 65 l~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~ 142 (256)
.++|+.++...++.++. ..+..+..++....... | ..|++++.+++.+..+.. +++.+++|.|...|..++++
T Consensus 349 ~~~L~~l~~~~~~~~~~-~~~~~l~~~l~~~~~~~-r---~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRY-R---DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTTTHHH-HHHHHHHHHTTCSSHHH-H---HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHHHhcCCChHH-H---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 99999998876654442 33334444443222222 2 489999999998765443 47899999999999999999
Q ss_pred HHHHHHHHHHHhhhhcc
Q psy15268 143 ISDAALRCFASLSDRFT 159 (256)
Q Consensus 143 vv~~ac~als~L~d~~~ 159 (256)
|...|||++.++++.+.
T Consensus 424 Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999863
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=9.1e-05 Score=72.64 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=118.7
Q ss_pred HHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccC
Q psy15268 17 AMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHG 96 (256)
Q Consensus 17 aLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~ 96 (256)
++.++++..||...- ++..|.+-|. .++.-++-.|+++|++|... .+ -...+..+..++....
T Consensus 93 ~~~~~~~~~~e~~~l------~in~l~kDL~-------~~n~~vr~lAL~~L~~i~~~---~~-~~~l~~~l~~~L~~~~ 155 (618)
T 1w63_A 93 GAMLLLDERQDVHLL------MTNCIKNDLN-------HSTQFVQGLALCTLGCMGSS---EM-CRDLAGEVEKLLKTSN 155 (618)
T ss_dssp HHHHHCCCCHHHHHH------HHHHHHHHHS-------CSSSHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHSCC
T ss_pred HHHHHhCCCcHHHHH------HHHHHHHhcC-------CCCHhHHHHHHHHHHhcCCH---HH-HHHHHHHHHHHHcCCC
Confidence 455556555553322 2356666555 34667889999999999743 22 2345677777887655
Q ss_pred cccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHH
Q psy15268 97 HSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASE 176 (256)
Q Consensus 97 ~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~ 176 (256)
..+.| +|.+++.+++++.| ..+++++|.+..+|..+|+.|+..|++++..++.. +++..+.+ ..+++.
T Consensus 156 ~~VRk----~A~~al~~l~~~~p---~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~---~~~~~~~~--~~~v~~ 223 (618)
T 1w63_A 156 SYLRK----KAALCAVHVIRKVP---ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER---SPDMLAHF--RKLVPQ 223 (618)
T ss_dssp HHHHH----HHHHHHHHHHHHCG---GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS---HHHHHHHH--HTTHHH
T ss_pred HHHHH----HHHHHHHHHHHHCh---HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh---ChHHHHHH--HHHHHH
Confidence 66666 99999999998642 36778999999999999999999999999999864 22212222 267888
Q ss_pred HHHHhccc--CCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHH
Q psy15268 177 LLIRLSNA--AGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239 (256)
Q Consensus 177 Lv~LL~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~ 239 (256)
++++|... +|..+ .+. .....++-....++++|..+++..|+....
T Consensus 224 l~~~L~~~~~~~~~~-----~~~------------~~~~~~~~~q~~il~~L~~l~~~~~~~~~~ 271 (618)
T 1w63_A 224 LVRILKNLIMSGYSP-----EHD------------VSGISDPFLQVRILRLLRILGRNDDDSSEA 271 (618)
T ss_dssp HHHHHHHHHHSCCCT-----TTC------------SSSSSCHHHHHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHcCCCCc-----ccc------------ccCCCCChHHHHHHHHHHHhCCCCHHHHHH
Confidence 88887531 11100 000 001235566778999999999999886544
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00027 Score=61.89 Aligned_cols=166 Identities=8% Similarity=0.079 Sum_probs=115.4
Q ss_pred CchhHHHHHHHHHHH-HhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-chh---h
Q psy15268 6 APENVLEVTARAMTY-YLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-GSV---F 80 (256)
Q Consensus 6 ~p~~~l~~AaraLTn-i~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-~~V---l 80 (256)
+...-. +|.-+|.. ++++.|+-.....-....+..|.+.|. +-++..+++.|+.+|+.|+..-+ ..+ +
T Consensus 29 ~w~eRk-~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~------~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 29 KWKDRV-EALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ------KDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp SHHHHH-HHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH------HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred CHHHHH-HHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 344445 78889999 988877643100001234667777662 12367899999999999997654 222 2
Q ss_pred hcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCC--hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 81 EAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ--LPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 81 ~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~--v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
..-.+.+++..+..-...++. .+..++.++|...+|.... +.++++.|...|+|..+++.+.++.++.++.+..
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~----aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIE----AIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHH----HHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHH----HHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 233567777777654445555 6777777888877664443 8999999999999999999999999999999886
Q ss_pred cCCCCCccchhccccHHHHHHHhc
Q psy15268 159 TRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 159 ~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
...++.+...+...+++.|.++|.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~ 201 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVN 201 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHHHHHhc
Confidence 432244444444588999999995
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=60.94 Aligned_cols=139 Identities=15% Similarity=0.176 Sum_probs=101.5
Q ss_pred CCCchhHHHHHHHHHHHHhccCc--hhh-hHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhh
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSA--ECT-RRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVF 80 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p--~~t-~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl 80 (256)
+.|+..+. .|++||..|+++.. +.. ... .-.+|.+++++. . +...|.+.+..+|..|+..... +.
T Consensus 72 D~n~~v~~-~A~~al~~la~~l~~~~f~~~y~---~~llp~ll~~l~-d------kk~~V~~aa~~al~~i~~~~~~-~~ 139 (249)
T 2qk1_A 72 DANIQAVA-LAAQSVELICDKLKTPGFSKDYV---SLVFTPLLDRTK-E------KKPSVIEAIRKALLTICKYYDP-LA 139 (249)
T ss_dssp CSCHHHHH-HHHHHHHHHHHHHCTTTSCHHHH---HHHHHHHHHGGG-C------CCHHHHHHHHHHHHHHHHHSCT-TC
T ss_pred CCCHHHHH-HHHHHHHHHHHhcccccccHHHH---HHHHHHHHHHHc-C------CCHHHHHHHHHHHHHHHHHccc-cc
Confidence 45666776 99999999999885 443 331 235799999988 2 2467999999999999886422 11
Q ss_pred hc----CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCC--C--CCh-HHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy15268 81 EA----GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ--D--PQL-PEAVEALSLLLRHEDTHISDAALRCF 151 (256)
Q Consensus 81 ~~----G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~--~--~~v-~~~lP~L~~lL~~~D~~vv~~ac~al 151 (256)
.. ..++.++.+++.-...++. .++..+.+++...+.. . +++ ++++|.|.+++..+|++|.+.|+-|+
T Consensus 140 ~~~~l~~ll~~l~~~l~~k~~~vk~----~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKHKTPQIRM----ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp TTCTTHHHHHHHHHHTTCSSHHHHH----HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCChHHHH----HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22 3555666777654445555 7777888877654432 2 268 99999999999999999999999999
Q ss_pred HHhhhhc
Q psy15268 152 ASLSDRF 158 (256)
Q Consensus 152 s~L~d~~ 158 (256)
..++.-+
T Consensus 216 ~~i~~~v 222 (249)
T 2qk1_A 216 AILIKIF 222 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988665
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00016 Score=67.76 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=77.8
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcH
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGL 85 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l 85 (256)
+++... .|+++|..+++...... . ....+|.|.+.+. .++..+...++++++.|+...+...+....+
T Consensus 454 ~~~Vr~-~a~~~l~~l~~~~~~~~---~-~~~llp~l~~~~~-------~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~ 521 (588)
T 1b3u_A 454 VYAIRE-AATSNLKKLVEKFGKEW---A-HATIIPKVLAMSG-------DPNYLHRMTTLFCINVLSEVCGQDITTKHML 521 (588)
T ss_dssp SHHHHH-HHHHHHHHHHHHHCHHH---H-HHHTHHHHHHTTT-------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cHHHHH-HHHHHHHHHHHHhCchh---H-HHHHHHHHHHHhh-------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333333 67777777766544321 1 2344565554222 2245677777777777766544444445566
Q ss_pred HHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 86 ASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 86 ~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
..++..++.....++. .+.|++.++++...+ ++.-..++|.|..++..+|++|.+.|++|+..+.
T Consensus 522 ~~l~~~l~d~~~~Vr~----~a~~~l~~l~~~~~~-~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRF----NVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHGGGCSCHHHHH----HHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHhhCCCCCchHHH----HHHHHHHHHHHHhch-hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 6666666544444444 777777777765422 1222567777777767777777777777777654
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00043 Score=69.11 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=142.2
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH-hcccc---------------
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELI-CTREA--------------- 76 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~I-s~d~~--------------- 76 (256)
.|.++|--+....+ . .|-.+++|.|++-|.+ +..+.|+...++.+|-++ +.+..
T Consensus 41 ~Av~~Lk~~sk~y~----~-~Vg~~~l~~li~~L~~-----d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 41 NAVRALKSLSKKYR----L-EVGIQAMEHLIHVLQT-----DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HHHHHHHHTTTTTT----T-HHHHHTHHHHHHHHHS-----CTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred HHHHHHHHHHHHhH----H-HhhhhhHHHHHHHHhc-----ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 56667766654333 2 3457899999999982 345899999999999775 33321
Q ss_pred ----ch-hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CCh---HHHHHHHHHhhcCCCHHHHHHH
Q psy15268 77 ----GS-VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQL---PEAVEALSLLLRHEDTHISDAA 147 (256)
Q Consensus 77 ----~~-Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v---~~~lP~L~~lL~~~D~~vv~~a 147 (256)
+. +-+.+++..++.+++...-++.. .++-.+..+|++.+..- ..| ...+|.|..+|..+-..+...+
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~----~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRnea 186 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRW----PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHH----HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHH----HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHH
Confidence 11 23568899999999865556666 88889999999875533 223 3689999999998888899999
Q ss_pred HHHHHHhhhhccCCCCCccchhcc-ccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHH
Q psy15268 148 LRCFASLSDRFTRRGVDPAPLAQH-GLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLL 226 (256)
Q Consensus 148 c~als~L~d~~~~~~~~i~~l~~~-glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~L 226 (256)
...+..|+.+ +..+|.++.. |.+++|..++...++ ..+.-.+..++.+|
T Consensus 187 llLL~~Lt~~----n~~iQklVAFEnaFe~Lf~Ii~~Eg~--------------------------~~Ggivv~DCL~ll 236 (651)
T 3grl_A 187 VLLLQALTRS----NGAIQKIVAFENAFERLLDIITEEGN--------------------------SDGGIVVEDCLILL 236 (651)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHHHTG--------------------------GGSHHHHHHHHHHH
T ss_pred HHHHHHHhcC----CHHHHHHHHHhccHHHHHHHHHhcCC--------------------------CccchhHHHHHHHH
Confidence 9999999976 5679998877 999999999976443 13446788999999
Q ss_pred HHHhcCCHHHHHHHHhcC-hHH
Q psy15268 227 SALCRGSPSITSDLLHSD-LPD 247 (256)
Q Consensus 227 s~l~~~S~~it~~Ll~~~-l~~ 247 (256)
.+|.+..+.--.-..+.+ ++.
T Consensus 237 ~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 237 QNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTCGGG
T ss_pred HHHHhcCHHHHHHHHHcCCHHH
Confidence 999999987655555566 443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00053 Score=58.43 Aligned_cols=137 Identities=11% Similarity=0.153 Sum_probs=100.5
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
+.|+..+. .|+.||..++.+....... .....+|.++++|. -+...+.+.+..+|..+....+- ..
T Consensus 68 d~~~~V~~-~a~~~l~~la~~l~~~~~~--~~~~ilp~ll~~l~-------d~~~~vr~~a~~aL~~~~~~~~~----~~ 133 (242)
T 2qk2_A 68 DSNVVLVA-MAGKCLALLAKGLAKRFSN--YASACVPSLLEKFK-------EKKPNVVTALREAIDAIYASTSL----EA 133 (242)
T ss_dssp CSCHHHHH-HHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHGGG-------CCCHHHHHHHHHHHHHHHTTSCH----HH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHcCCH----HH
Confidence 56777777 9999999999876554322 12346799999887 23578999999999999775431 12
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCC-C--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ-D--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~-~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
.++.++.+++.-...++. .++..+..+.....|. . +++..++|.|...|...+++|.+.|..|+..+...+
T Consensus 134 ll~~l~~~l~~~~~~vr~----~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 134 QQESIVESLSNKNPSVKS----ETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHTTCSCHHHHH----HHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHH----HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 345566666644445555 7777888865554333 2 378999999999999999999999999999988665
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0019 Score=54.93 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=108.7
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchh--hh
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSV--FE 81 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~V--l~ 81 (256)
+.+...-. +|+.+|..++++.|+.... -....++.|...|. ..++..+.+.++.+|+.++...+..+ +-
T Consensus 26 s~~w~~R~-~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~------kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 26 EKKWTLRK-ESLEVLEKLLTDHPKLENG--EYGALVSALKKVIT------KDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp CSSHHHHH-HHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHH------HCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred cCCHHHHH-HHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555 8999999999986653211 02244677777662 12378899999999999997644322 22
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCC
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRR 161 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~ 161 (256)
.-.+.+++..+..-...++. .|..++.+++... .+.+++|.|...|++.++++.+.++..+..+.+.+.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~----~a~~aL~~~~~~~-----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-- 165 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVT----ALREAIDAIYAST-----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ-- 165 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHH----HHHHHHHHHHTTS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHcCCCHHHHH----HHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC--
Confidence 34567777777654444444 6777777777654 378999999999999999999999999999887752
Q ss_pred CC-CccchhccccHHHHHHHhc
Q psy15268 162 GV-DPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 162 ~~-~i~~l~~~glv~~Lv~LL~ 182 (256)
++ ...... ..+++.|+++|.
T Consensus 166 ~~~~~~~~l-~~l~p~l~~~l~ 186 (242)
T 2qk2_A 166 PTALNKKLL-KLLTTSLVKTLN 186 (242)
T ss_dssp GGGCCHHHH-HHHHHHHHHHHT
T ss_pred CCCccHHHH-HHHHHHHHHHhc
Confidence 22 122222 267888888885
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0059 Score=59.72 Aligned_cols=143 Identities=10% Similarity=0.081 Sum_probs=104.4
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHH
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLA 86 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~ 86 (256)
+..++ +|+|++.++-. .| .. ...+++.|+..|. .++.++..-++.+|++|+..+|..+-+ -..
T Consensus 291 ~aV~~-ea~~~i~~l~~-~~----~l--~~~a~~~L~~~L~-------~~d~~vr~~aL~~L~~i~~~~p~~~~~--~~~ 353 (618)
T 1w63_A 291 NAILY-ETVLTIMDIKS-ES----GL--RVLAINILGRFLL-------NNDKNIRYVALTSLLKTVQTDHNAVQR--HRS 353 (618)
T ss_dssp HHHHH-HHHHHHHHSCC-CH----HH--HHHHHHHHHHHHT-------CSSTTTHHHHHHHHHHHHHHHHHHHGG--GHH
T ss_pred HHHHH-HHHHHHHhcCC-CH----HH--HHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHHhhCHHHHHH--HHH
Confidence 34555 99999998643 11 11 1257788888765 236789999999999999988876543 345
Q ss_pred HHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCcc
Q psy15268 87 SVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPA 166 (256)
Q Consensus 87 alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~ 166 (256)
.++..++.....+.+ .|+.++.++|... .+.++++.|...+...|.++...++.++..++..|.. + .
T Consensus 354 ~i~~~l~d~d~~Ir~----~alelL~~l~~~~-----nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~--~-~- 420 (618)
T 1w63_A 354 TIVDCLKDLDVSIKR----RAMELSFALVNGN-----NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP--S-K- 420 (618)
T ss_dssp HHHHGGGSSCHHHHH----HHHHHHHHHCCSS-----STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC--C-H-
T ss_pred HHHHHccCCChhHHH----HHHHHHHHHcccc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc--c-H-
Confidence 666666655666777 9999999999643 3677788888888889999999999999999998631 1 1
Q ss_pred chhccccHHHHHHHhcc
Q psy15268 167 PLAQHGLASELLIRLSN 183 (256)
Q Consensus 167 ~l~~~glv~~Lv~LL~~ 183 (256)
.-.++.++++|..
T Consensus 421 ----~~~v~~ll~lL~~ 433 (618)
T 1w63_A 421 ----RWHIDTIMRVLTT 433 (618)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHh
Confidence 2346677777754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=68.89 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=101.4
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-C--ChHHHH-HHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-P--QLPEAV-EALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~--~v~~~l-P~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.+...+.|+|+.+.......+. .|.|+++|+|.+ +.. . .-+..+ |.|..+|...|.+|++.|+|||..|+
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~----~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRT----TAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHH----HHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCCCCHHHHH----HHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4556678899988766666666 999999999953 222 2 234455 55778899999999999999999998
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
... ..+-...+++.|+++.|..+|...... .+ +..+..... .......-+.....++.+|..||.+|.+
T Consensus 105 ~~~--g~d~~~~l~~~~il~~L~~~l~~~~~~----~~---~~~~~~~~~--~~~~~~~~~~~~~~~l~lL~~L~e~s~~ 173 (684)
T 4gmo_A 105 QEE--EADFCVHLYRLDVLTAIEHAAKAVLET----LT---TSEPPFSKL--LKAQQRLVWDITGSLLVLIGLLALARDE 173 (684)
T ss_dssp HHS--CHHHHHHHHHTTHHHHHHHHHHHHHHH----HH---CBTTBGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hhc--CchHHHHHHHcChHHHHHHHHHhhHHH----Hh---hhccccccc--cHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 542 235567789999999999998532100 00 000000000 0000001112334678999999999999
Q ss_pred HHHHHHhcC-hHHHHhh
Q psy15268 236 ITSDLLHSD-LPDAIGC 251 (256)
Q Consensus 236 it~~Ll~~~-l~~~l~~ 251 (256)
....+.+.+ ++..+..
T Consensus 174 ~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHH
Confidence 998888877 6555443
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0066 Score=63.11 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=109.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch---
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS--- 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~--- 78 (256)
|.+.+++... .|+.||.+++++.++.. ....++.+++.|. .+...+.+.+..+|+.|+...+..
T Consensus 57 L~d~~~~vR~-~A~~~L~~l~~~~~~~~-----~~~i~~~Ll~~l~-------d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 57 LEDKNGEVQN-LAVKCLGPLVSKVKEYQ-----VETIVDTLCTNML-------SDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp TTCSSHHHHH-HHHHHHHHHHTTSCHHH-----HHHHHHHHHHHTT-------CSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred hcCCCHHHHH-HHHHHHHHHHHhCCHHH-----HHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4456777777 99999999999887732 1234577777665 224578999999999998875532
Q ss_pred -----hhhcCcHHHHHHhhcc-cCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy15268 79 -----VFEAGGLASVLLFIKQ-HGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCF 151 (256)
Q Consensus 79 -----Vl~~G~l~alL~~ldf-f~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~al 151 (256)
-.....+..++..++. ....++. .|+.++.++|...+..- ++..++++.|...|.++++.|.+.|+.|+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~----~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQL----EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHH----HHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHH----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1233455666666652 2233344 89999999997543322 48899999999999999999999999999
Q ss_pred HHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 152 ASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 152 s~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
..++.... ++. + ..+++.+++.|..
T Consensus 200 ~~l~~~~~--~~~----~-~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 200 GHLVMSCG--NIV----F-VDLIEHLLSELSK 224 (1230)
T ss_dssp HHHTTTC----------C-TTHHHHHHHHHHH
T ss_pred HHHHHhcC--HHH----H-HHHHHHHHHHhcc
Confidence 99997642 111 2 2456677776643
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00036 Score=54.28 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=73.8
Q ss_pred hCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHh
Q psy15268 35 IDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRL 114 (256)
Q Consensus 35 ~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNl 114 (256)
..+.+|.|.+.|. .++.++...++|+|+++... .+..++..++.....+++ .|.|++.++
T Consensus 10 ~~~~~~~l~~~L~-------~~~~~vR~~A~~~L~~~~~~---------~~~~L~~~L~d~~~~vR~----~A~~aL~~~ 69 (131)
T 1te4_A 10 HSSGLVPRGSHMA-------DENKWVRRDVSTALSRMGDE---------AFEPLLESLSNEDWRIRG----AAAWIIGNF 69 (131)
T ss_dssp -----------CC-------SSCCCSSSSCCSSTTSCSST---------THHHHHHGGGCSCHHHHH----HHHHHHGGG
T ss_pred ccccHHHHHHHhc-------CCCHHHHHHHHHHHHHhCch---------HHHHHHHHHcCCCHHHHH----HHHHHHHhc
Confidence 6677888888775 33678999999999877321 257888888765556666 999999987
Q ss_pred cCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 115 CSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 115 Cr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.. .+++|.|..+|.++|+.|...|+|++.++.+ .+.++.|+++|.
T Consensus 70 ~~---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------------~~a~~~L~~~l~ 114 (131)
T 1te4_A 70 QD---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------------ERVRAAMEKLAE 114 (131)
T ss_dssp CS---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------------HHHHHHHHHHTT
T ss_pred CC---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHh
Confidence 62 5689999999999999999999999998863 245788888884
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.039 Score=57.30 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=100.9
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
+.+++... .|...|.+.+....-.... ......++.+.+.|. .+..++.+.|+.+|++++...+...+ ..
T Consensus 17 s~d~~~R~-~A~~~L~~~l~~~~~~~~~-~~~~~il~~Ll~~L~-------d~~~~vR~~A~~~L~~l~~~~~~~~~-~~ 86 (1230)
T 1u6g_C 17 SSDKDFRF-MATNDLMTELQKDSIKLDD-DSERKVVKMILKLLE-------DKNGEVQNLAVKCLGPLVSKVKEYQV-ET 86 (1230)
T ss_dssp CSSHHHHH-HHHHHHHHHTSSSCCSCCT-THHHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHHHTTSCHHHH-HH
T ss_pred CCCHhHHH-HHHHHHHHHHcccccCCCh-hHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHhCCHHHH-HH
Confidence 45666666 7777887776432111100 001234577777665 34789999999999999876544221 22
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-------CChHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-------PQLPEAVEALSLLLR-HEDTHISDAALRCFASLS 155 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-------~~v~~~lP~L~~lL~-~~D~~vv~~ac~als~L~ 155 (256)
.+..++..+......++. .|...++.++....+.. ....+++|.|...+. +++.++.+.|+.+|..++
T Consensus 87 i~~~Ll~~l~d~~~~vR~----~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRD----ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHH----HHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHH----HHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 445555555433333333 56677777777665541 268999999999998 689999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhc
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+.+. +.+.... ..+++.+++.|.
T Consensus 163 ~~~~---~~l~~~~-~~ll~~l~~~L~ 185 (1230)
T 1u6g_C 163 SRQG---GLLVNFH-PSILTCLLPQLT 185 (1230)
T ss_dssp HHTC---SSCTTTH-HHHHHHHGGGGG
T ss_pred HHhH---hHHHHHH-HHHHHHHHHHHc
Confidence 8652 3344322 345566666554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0078 Score=62.83 Aligned_cols=121 Identities=13% Similarity=0.066 Sum_probs=75.9
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC----cHHHHHHhhcccCcccchhhhh-HHHHHH
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG----GLASVLLFIKQHGHSVHKDTLH-SAMAVV 111 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G----~l~alL~~ldff~~~~qr~~l~-~a~~~v 111 (256)
..++.+.++|...+. .+...=.-.|-++||+|-|++- +..--+.. .+..++++.+.....-.+-..+ +++|++
T Consensus 447 ~~~~~~~~~l~~~l~-~~~~~W~~~EA~~~a~gaIa~~-~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l 524 (1023)
T 4hat_C 447 DTEEIMISKLARQID-GSEWSWHNINTLSWAIGSISGT-MSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVV 524 (1023)
T ss_dssp HHHHHHHHHHHHHHS-STTCCHHHHHHHHHHHHHTTTS-SCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence 345667777652221 0123568899999999999964 32111222 3334444443110000111122 677999
Q ss_pred HHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 112 SRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 112 sNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
.+.|+.....+.++++++..|-+.++.+.++|.+.|||||.+|++...
T Consensus 525 Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 525 GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 999997633333788888888777766778999999999999999863
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=95.75 E-value=0.023 Score=57.26 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL 136 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL 136 (256)
.-...|-+++++|.|++..... ...-+..++.++-.+... +..+-..++|++.+.|+.....+.+++.++|.|.+.|
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~--~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 538 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN--YSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL 538 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS--CCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhhcCch--hhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 4567889999999998764431 123345555554322211 1223349999999999865332247888888888777
Q ss_pred cCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 137 RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 137 ~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++ ++|...||++|.++++... +.+.+.+ .+++..+.+++.
T Consensus 539 ~~--~~V~~~A~~al~~l~~~~~---~~l~p~~-~~il~~l~~~l~ 578 (963)
T 2x19_B 539 GN--PELSVSSVSTLKKICRECK---YDLPPYA-ANIVAVSQDVLM 578 (963)
T ss_dssp TC--GGGHHHHHHHHHHHHHHTG---GGCTTTH-HHHHHHHHHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHHH---HHHHhhH-HHHHHHHHHHhc
Confidence 54 8999999999999998752 3444444 356667777764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=95.73 E-value=0.092 Score=54.08 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcc----cchhhhh-HHHHHHHHhcCCCCCCCCChHHHHHH
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHS----VHKDTLH-SAMAVVSRLCSKMEPQDPQLPEAVEA 131 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~----~qr~~l~-~a~~~vsNlCr~~~~~~~~v~~~lP~ 131 (256)
.-.-.|-++|++|-|++...... +..-+..+++++-..... ...-..+ .++|++++.|+.....+.++..+++.
T Consensus 466 ~W~~~eaal~algsia~~~~~~~-e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ 544 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILK 544 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchh-hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34568999999999987543221 111133444443211100 0111223 58899999987653333488999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 132 LSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 132 L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
|...+++.+++|...||+||.++++..
T Consensus 545 ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 545 LFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 988898889999999999999999874
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.068 Score=52.46 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=108.9
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI 92 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l 92 (256)
.+--++.++++..||...- ++..|.+-|. .++.-+.--|+.+|++|.... +-...+.++.+.+
T Consensus 93 l~YL~l~~~~~~~~e~~~L------~iN~l~kDl~-------~~n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l 155 (621)
T 2vgl_A 93 IGYLFISVLVNSNSELIRL------INNAIKNDLA-------SRNPTFMGLALHCIANVGSRE----MAEAFAGEIPKIL 155 (621)
T ss_dssp HHHHHHHHSCCCCHHHHHH------HHHHHHHHHH-------SCCHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCcHHHHH------HHHHHHHhcC-------CCCHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHH
Confidence 4445666677766665522 2356666555 335667778999999985422 2223445556666
Q ss_pred --cccCcccchhhhhHHHHHHHHhcCCCCCCCCChH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccch
Q psy15268 93 --KQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLP--EAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPL 168 (256)
Q Consensus 93 --dff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~--~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l 168 (256)
......+.| +|.-.+.++++.. | ..++ ++++.|..+|...|+.|+..|+.++..++.. +++....+
T Consensus 156 ~~~d~~~~VRK----~A~~al~kl~~~~-p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~---~~~~~~~~ 225 (621)
T 2vgl_A 156 VAGDTMDSVKQ----SAALCLLRLYRTS-P--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK---NPEEFKTS 225 (621)
T ss_dssp HCSSSCHHHHH----HHHHHHHHHHHHC-G--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---CHHHHTTH
T ss_pred hCCCCCHHHHH----HHHHHHHHHHHhC-h--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh---ChHHHHHH
Confidence 444455556 9999999999843 2 2333 7899999999999999999999999999865 22222222
Q ss_pred hccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcC-CHHHHHH
Q psy15268 169 AQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRG-SPSITSD 239 (256)
Q Consensus 169 ~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~-S~~it~~ 239 (256)
+ +.+++.|-+++.. +.. +...+ .- ....++-....++++|..+++. .|+....
T Consensus 226 ~-~~~~~~L~~ll~~-~~~----~~~~~------~~------~~~~~~w~qi~il~ll~~~~~~~d~~~~~~ 279 (621)
T 2vgl_A 226 V-SLAVSRLSRIVTS-AST----DLQDY------TY------YFVPAPWLSVKLLRLLQCYPPPEDPAVRGR 279 (621)
T ss_dssp H-HHHHHHHHHHHHC-CSS----SCSTT------EE------TTEESHHHHHHHHHHGGGSSSCSSHHHHHH
T ss_pred H-HHHHHHHHHHHhC-CCC----Cccch------hh------cCCCCchHHHHHHHHHHHhCCCCCHHHHHH
Confidence 2 1233344444422 100 00000 00 0112456777889999999875 4666553
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.14 Score=44.32 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=82.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhh----hHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc-cc
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECT----RRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR-EA 76 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t----~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d-~~ 76 (256)
+.+.|...+. .|+.||..++....... .........+|.|++|.. . .+..-+.+.++.+|-.+... .+
T Consensus 64 l~DsN~~v~~-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l-~-----~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 64 ITDSNVVAQE-QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGL-T-----SSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp TTCSSHHHHH-HHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTS-S-----CCCHHHHHHHHHHHHHHHHTSSS
T ss_pred hccchHHHHH-HHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHh-c-----CccHHHHHHHHHHHHHHHHhcCc
Confidence 4577777777 99999999987643221 111224566899999843 1 22456778888877665432 22
Q ss_pred chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCC--CCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy15268 77 GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK--MEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFA 152 (256)
Q Consensus 77 ~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~--~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als 152 (256)
... .+..++.++..-+..++. .++-.+.++-+. ....+ +.++.+++.+..++.+.|+.|.+.|..++.
T Consensus 137 ~~~----~~e~l~~~l~~Knpkv~~----~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 137 ITQ----SVELVIPFFEKKLPKLIA----AAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp SHH----HHHHHGGGGGCSCHHHHH----HHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHhccCHHHHH----HHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 111 123344444433333333 334444444432 21122 256778888899999999999999999887
Q ss_pred Hhh
Q psy15268 153 SLS 155 (256)
Q Consensus 153 ~L~ 155 (256)
.+-
T Consensus 209 ~ly 211 (278)
T 4ffb_C 209 EIY 211 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.13 Score=52.47 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCC----------CCC--CC
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKME----------PQD--PQ 124 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~----------~~~--~~ 124 (256)
+.-|.-.++|+||.++..-+... -...+..+++.+......++. .|.|++.++|.... +.. ++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~-l~~~l~~l~~~L~d~~~~V~~----~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~ 545 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYT----YAAITIEKILTIRESNTSPAFIFHKEDISNS 545 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHH----HHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred CceehHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCChhHHH----HHHHHHHHHHhcccccccccccccHHHhhhh
Confidence 67799999999999998743322 233456666666543445676 99999999998543 111 47
Q ss_pred hHHHHHHHHHhhcCCC-----HHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 125 LPEAVEALSLLLRHED-----THISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 125 v~~~lP~L~~lL~~~D-----~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+.++++.|..+++... ....+.+..|+.++++.+. +.+.+.++ .++++|++.+..
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~---~~~~p~~~-~l~~~L~~~l~~ 605 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE---DSIQPLFP-QLLAQFIEIVTI 605 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT---TTTGGGHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH---HhhhhHHH-HHHHHHHHHHHH
Confidence 8888888888887741 2245788999999998863 45666443 588888888864
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.34 Score=47.46 Aligned_cols=127 Identities=13% Similarity=0.189 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-hhhhcCcHH
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-SVFEAGGLA 86 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~Vl~~G~l~ 86 (256)
..++ +|++++.++- ..++. ...++..|...|. .+..++.-.++.+|.+|+..+|+ ..++ .-..
T Consensus 308 aVl~-ea~~~i~~l~-~~~~~------~~~~~~~L~~~L~-------~~~~niry~aL~~l~~l~~~~~~~~~~~-~~~~ 371 (621)
T 2vgl_A 308 AVLF-EAISLIIHHD-SEPNL------LVRACNQLGQFLQ-------HRETNLRYLALESMCTLASSEFSHEAVK-THIE 371 (621)
T ss_dssp HHHH-HHHHHHHHHC-CCHHH------HHHHHHHHHHHSS-------CSCHHHHHHHHHHHHHHTTCTTTHHHHH-TTHH
T ss_pred HHHH-HHHHHHHhcC-CcHHH------HHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHHhccCcHHHHH-HHHH
Confidence 4444 9999999874 22221 1246677776554 33679999999999999988763 2222 2344
Q ss_pred HHHHhhc-ccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 87 SVLLFIK-QHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 87 alL~~ld-ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
.++..++ .....+.+ .|+.++..+|... .+.+++.-|...+...|.+....+..++..++..|.
T Consensus 372 ~i~~~L~~d~d~~Ir~----~aL~lL~~l~~~~-----Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 372 TVINALKTERDVSVRQ----RAVDLLYAMCDRS-----NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HHHHHHTTCCCHHHHH----HHHHHHHHHCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCHhHHH----HHHHHHHHHcChh-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 4555555 44455666 8999999998442 588888888888888999999999999999999874
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.081 Score=53.58 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccC-cccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhc
Q psy15268 59 DLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHG-HSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLR 137 (256)
Q Consensus 59 DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~-~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~ 137 (256)
.-.|-++++++.|+....... ...+..++..+-.+. ...+..+-..++|+++..|......+.++.+++|.|.+.|+
T Consensus 479 ~~~eaal~~l~~iae~~~~~~--~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~ 556 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE--KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN 556 (971)
T ss_dssp HHHHHHHHHHHHTTTC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 367788889998876544321 234444554442221 10122223489999999998765434589999999988882
Q ss_pred CCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 138 HEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 138 ~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++|...||+||.++++... +.+...+ .+++..+.+++.
T Consensus 557 ---~~v~~~A~~al~~l~~~~~---~~l~p~~-~~ll~~l~~~l~ 594 (971)
T 2x1g_F 557 ---SSMSAQATLGLKELCRDCQ---LQLKPYA-DPLLNACHASLN 594 (971)
T ss_dssp ---SSCHHHHHHHHHHHHHHCH---HHHHHHH-HHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHH---HhccccH-HHHHHHHHHHHc
Confidence 8899999999999998753 3344333 256666667765
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.2 Score=51.03 Aligned_cols=119 Identities=9% Similarity=0.059 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhccc--cchhhh----cCcHHHH-----HHhhccc---CcccchhhhhHHHHHHHHhcCCCCCCCC
Q psy15268 58 KDLAEQCIKVLELICTRE--AGSVFE----AGGLASV-----LLFIKQH---GHSVHKDTLHSAMAVVSRLCSKMEPQDP 123 (256)
Q Consensus 58 ~DlaEQal~aLe~Is~d~--~~~Vl~----~G~l~al-----L~~ldff---~~~~qr~~l~~a~~~vsNlCr~~~~~~~ 123 (256)
--..|-|+.++|-|+..+ .+.-.+ .--+.+. +..+... ...+++ .|.|++++.|...+ +.
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~----~a~~~lg~~~~~~~--~~ 492 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV----DAIKYIYTFRNQLT--KA 492 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH----HHHHHHHHTGGGSC--HH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH----HHHHHHHHHHhhCC--HH
Confidence 347789999999998542 211111 1133333 2222222 122344 89999999998762 24
Q ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccC--------CCCCccchhccccHHHHHHHhcc
Q psy15268 124 QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTR--------RGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~--------~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+..+++|.+.+.|.++++.|...||+||.++++.... ..+.+.+.+ ..++++|.+++..
T Consensus 493 ~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST-EILLKNLIALILK 559 (960)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH-HHHHHHHHHHHHh
Confidence 7999999999999888999999999999999874210 112233333 2577778888753
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=94.22 E-value=0.31 Score=49.01 Aligned_cols=134 Identities=11% Similarity=0.098 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc-chhhhcCcHHH
Q psy15268 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA-GSVFEAGGLAS 87 (256)
Q Consensus 9 ~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~-~~Vl~~G~l~a 87 (256)
...+.|.+|+..++++.++... .-+|.+.+.|. ... + +..-|+..++|++|..+.... ..-+=...+..
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~------~~l~~l~~~l~-~l~--~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~ 533 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYS------DVVPGLIGLIP-RIS--I-SNVQLADTVMFTIGALSEWLADHPVMINSVLPL 533 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCC------SHHHHHHHHGG-GSC--C-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHhhcCchhh------HHHHHHHHHHH-hCC--C-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3455889999999999876332 23455555443 221 2 356699999999999987422 11222366777
Q ss_pred HHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhc
Q psy15268 88 VLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHE--DTHISDAALRCFASLSDRF 158 (256)
Q Consensus 88 lL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~--D~~vv~~ac~als~L~d~~ 158 (256)
++..++. ..++. .|.+++.++|+..+..- +++.+++..|.+++... +.+..+.+.-|+.+++...
T Consensus 534 l~~~l~~--~~V~~----~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 534 VLHALGN--PELSV----SSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHTTC--GGGHH----HHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCC--chHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 7777754 45666 99999999997643222 58899999998888763 6788999999999998653
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.092 Score=53.16 Aligned_cols=134 Identities=11% Similarity=0.081 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc-hhhhcCcHHHH
Q psy15268 10 VLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG-SVFEAGGLASV 88 (256)
Q Consensus 10 ~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~-~Vl~~G~l~al 88 (256)
..+.|.+|+..++++.++.. ...+|.+.+.|. ...- +-+..-|.+.++|++|.++..-.. .-+=...++.+
T Consensus 480 ~~eaal~~l~~iae~~~~~~------~~~l~~l~~~l~-~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l 551 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEE------KRQIPRLMRVLA-EIPY-EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLL 551 (971)
T ss_dssp HHHHHHHHHHHTTTC------------CHHHHHHHHHH-HSCT-TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHH-hcCc-cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45578889999998877543 245566666443 3220 112577999999999999865221 11112334455
Q ss_pred HHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhc
Q psy15268 89 LLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRH--EDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 89 L~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~--~D~~vv~~ac~als~L~d~~ 158 (256)
+..+| ..+++ .|.+++.++|+.....- +++.+++..|.++++. -|.+..+.+.-|+..++...
T Consensus 552 ~~~l~---~~v~~----~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 552 VRGLN---SSMSA----QATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHH---SSCHH----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHhC---hHHHH----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 55554 45677 99999999997642211 3677777777777877 47899999999999998764
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=93.99 E-value=0.18 Score=52.68 Aligned_cols=137 Identities=10% Similarity=0.070 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc---ccchhhhcCcH
Q psy15268 9 NVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR---EAGSVFEAGGL 85 (256)
Q Consensus 9 ~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d---~~~~Vl~~G~l 85 (256)
..+|.++||+-.|+++..+.... -.-..++|.|++++. ... ..-+..-++.-++|++|.+++= ++. -+
T Consensus 468 ~~~EA~~~a~gaIa~~~~~~~e~-~~l~~vi~~Ll~l~~-~~~-~~d~k~~v~~t~~~~lGry~~wl~~~~~------~L 538 (1023)
T 4hat_C 468 HNINTLSWAIGSISGTMSEDTEK-RFVVTVIKDLLDLCV-KKR-GKDNKAVVASDIMYVVGQYPRFLKAHWN------FL 538 (1023)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHH-HHHHHHHHHHHHHHH-HCC-SHHHHHHHHHHHHHHHHTCHHHHHHCHH------HH
T ss_pred HHHHHHHHHHHHHHcCCCchhHH-HHHHHHHHHHHHhhh-ccc-cCcchHHHHHHHHHHHHHHHHHHhccHH------HH
Confidence 34667899999999998765322 234577888887554 111 0001234566677999887663 332 26
Q ss_pred HHHHHhhcccC----cccchhhhhHHHHHHHHhcCCC-------CCC--CCChHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy15268 86 ASVLLFIKQHG----HSVHKDTLHSAMAVVSRLCSKM-------EPQ--DPQLPEAVEALSLLLRHEDTHISDAALRCFA 152 (256)
Q Consensus 86 ~alL~~ldff~----~~~qr~~l~~a~~~vsNlCr~~-------~~~--~~~v~~~lP~L~~lL~~~D~~vv~~ac~als 152 (256)
.++|+++=.+- ..+|. .|.|++.++|.+- .+. .+++.+++..+.+.+..-+++-...+.-|++
T Consensus 539 ~~vl~~L~~~l~~~~~~v~~----~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 539 RTVILKLFEFMHETHEGVQD----MACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHHHHHTTCSCHHHHH----HHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHH----HHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67777764321 23566 9999999988741 111 2478888888888877778888889999999
Q ss_pred Hhhhhc
Q psy15268 153 SLSDRF 158 (256)
Q Consensus 153 ~L~d~~ 158 (256)
.+++..
T Consensus 615 ~vi~~~ 620 (1023)
T 4hat_C 615 IIISEE 620 (1023)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.44 Score=42.41 Aligned_cols=135 Identities=12% Similarity=0.120 Sum_probs=99.4
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEA 82 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~ 82 (256)
.+.|...-+ -|.|||-.++++.|=.-..++ -.+.+|.+.+. ++..=+.|-+...||++.- .-+..
T Consensus 85 k~~dEkval-~A~r~L~~LLe~vpL~~~~y~---Kl~~aL~dlik-------~~~~il~~eaae~Lgklkv----~~~~~ 149 (265)
T 3b2a_A 85 SQENEKVTI-KALRALGYLVKDVPMGSKTFL---KAAKTLVSLLE-------SPDDMMRIETIDVLSKLQP----LEDSK 149 (265)
T ss_dssp CSTTHHHHH-HHHHHHHHHHTTCCBCHHHHH---HHHHHHHHHTT-------SCCHHHHHHHHHHHHHCCB----SCCCH
T ss_pred hccchhHHH-HHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHhc-------CCCchHHHHHHHHhCcCCc----ccchH
Confidence 344544455 999999999999987665543 44566666444 4567789999999999921 22234
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+.+..+...+..+...+|- -|+..+.|.-..- ..+..+.+++--+..+|+++|+.+++.|.-++-.+...
T Consensus 150 ~V~~~l~sLl~Skd~~vK~----agl~~L~eia~~S-~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKV----AGFCLFLNMLNSS-ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHH----HHHHHHHHHGGGC-SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCChhHHH----HHHHHHHHhhccc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5566677777655667776 7888888887552 22248899999999999999999999999999998865
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.74 E-value=2.4 Score=39.09 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHH
Q psy15268 55 RTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSL 134 (256)
Q Consensus 55 ~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~ 134 (256)
+++..+.--+--.+++++......++ +...+.+-+.... ..-| -.|+.++++++ .+..++++.|.+.+
T Consensus 79 s~d~~lKrLvYLyl~~~~~~~~e~iL---v~Nsl~kDl~~~N-~~iR---~lALRtL~~I~-----~~~m~~~l~~~lk~ 146 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCIAEDVII---VTSSLTKDMTGKE-DSYR---GPAVRALCQIT-----DSTMLQAIERYMKQ 146 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSSCGGG---GHHHHHHHHHSSC-HHHH---HHHHHHHHHHC-----CTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHH---HHHHHHhhcCCCc-HhHH---HHHHHHHhcCC-----CHHHHHHHHHHHHH
Confidence 44677777777888888777333333 3334444443322 2334 27777877775 33489999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 135 LLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 135 lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
.|.+.++.|...|+.|..+|... .+| +++ ++++++.+++.
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~---~pe----~v~-~~~~~l~~ll~ 186 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKC---SFD----VVK-RWVNEAQEAAS 186 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTT---CHH----HHH-TTHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHHhcc---CHH----HHH-HHHHHHHHHhc
Confidence 99999999999999999999865 233 222 67888888875
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.36 Score=50.04 Aligned_cols=121 Identities=11% Similarity=0.025 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhccccchhh----hcCcHHHHHHhhcc-----cCcccchhhhhHHHHHHHHhcCCCCCCCCChHHH
Q psy15268 58 KDLAEQCIKVLELICTREAGSVF----EAGGLASVLLFIKQ-----HGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEA 128 (256)
Q Consensus 58 ~DlaEQal~aLe~Is~d~~~~Vl----~~G~l~alL~~ldf-----f~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~ 128 (256)
=.-.|-++-+|+.|+.-.+.... ....++.+..++.- .....|..+...++|++.+.++.....+.++.++
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~ 536 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPAL 536 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 35678899999998653222111 01222333333321 0112233344499999999999886555699999
Q ss_pred HHHHHH--hhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 129 VEALSL--LLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 129 lP~L~~--lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++.+.. -+++.+++|...||.+|.++++..+ ..+..-++ .++..+..+|.
T Consensus 537 L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~---~~L~~~~~-~il~~l~~lL~ 588 (980)
T 3ibv_A 537 IEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK---KQVVNYTE-SSLAMLGDLLN 588 (980)
T ss_dssp HHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT---TTCSSSHH-HHHHHTTGGGC
T ss_pred HHHHhccccccCCChhHHHHHHHHHHHHHHHhh---HHhhhHHH-HHHHHHHHhhc
Confidence 999988 8889999999999999999998753 24433332 25555555554
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=90.66 E-value=0.35 Score=50.87 Aligned_cols=165 Identities=12% Similarity=0.070 Sum_probs=99.9
Q ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCccc----chhhhh-HHHHHHHHh
Q psy15268 40 KAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSV----HKDTLH-SAMAVVSRL 114 (256)
Q Consensus 40 p~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~----qr~~l~-~a~~~vsNl 114 (256)
+.+.++|...+. .+...-...|-.+|++|-|||--. .-.+...+..++.+|--...+. .|-..+ +.+|++++.
T Consensus 476 ~i~~~~l~~~~~-~~~~sW~~lea~~~aigaIag~~~-~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 476 IIMTKKLQNQVN-GTEWSWKNLNTLCWAIGSISGAMH-EEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHTTTSSC-HHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-CCCCCHHHHhHHHHHHHHHHCcCC-cccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 455566541111 012346789999999999997432 1123444555555553211111 121122 467999999
Q ss_pred cCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccc---cHHHHHHHhcccCCCCCCc
Q psy15268 115 CSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHG---LASELLIRLSNAAGSNPLN 191 (256)
Q Consensus 115 Cr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~g---lv~~Lv~LL~~~~~~~~~~ 191 (256)
+|.......+++.++.-|-..++.++++|.+-||-||.+++....+ ++-.....+ .++.+++-+...
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~---~lv~~~~~e~~p~i~~il~~~~~~------- 623 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR---HFVQVQVGEVMPFIDEILNNINTI------- 623 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG---GGTSCCTTCSSCHHHHHHTSHHHH-------
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH---HHhhccccccchHHHHHHHHHHHH-------
Confidence 9986433348888888888888888999999999999999988542 222211122 334444333221
Q ss_pred CCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 192 TSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
.....+.....+...++.+.+.-|.
T Consensus 624 -------------------~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 624 -------------------ICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp -------------------HTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred -------------------HHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 1235667777888888887776664
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=88.59 E-value=1.9 Score=44.96 Aligned_cols=156 Identities=12% Similarity=0.193 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcc--ccc------h----hh
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTR--EAG------S----VF 80 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d--~~~------~----Vl 80 (256)
.|..++..+.+-.|++... --...||++.+..- -+-.+|+.|+..+++++++- ..+ . +-
T Consensus 153 ~~l~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~-------d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 153 AILAAFSAMVDAAKDQVAL--RMPELIPVLSETMW-------DTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp HHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHH--hccchhcchHhhcc-------cCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence 5778888888888988854 25678899988655 23579999999999999873 111 1 11
Q ss_pred hcCcHH---------------------HHHHhhc----ccCcccchhhhhHHHHHHHHhcCCCCCCC---CChHHHHHHH
Q psy15268 81 EAGGLA---------------------SVLLFIK----QHGHSVHKDTLHSAMAVVSRLCSKMEPQD---PQLPEAVEAL 132 (256)
Q Consensus 81 ~~G~l~---------------------alL~~ld----ff~~~~qr~~l~~a~~~vsNlCr~~~~~~---~~v~~~lP~L 132 (256)
+-..++ -+..+|+ .-++...| ++.-++-|+|+=++-|. +++...+|.|
T Consensus 224 ~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r----~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 224 DPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKR----KSAVIIDNMCKLVEDPQVIAPFLGKLLPGL 299 (986)
T ss_dssp CTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHH----HHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred ChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhhe----eeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence 112222 2333332 22444555 99999999999884443 3788888888
Q ss_pred HHhh-cCCCHHHHHHHHHHHHHhhhhccC-CCCCccchhccccHHHHHHHh
Q psy15268 133 SLLL-RHEDTHISDAALRCFASLSDRFTR-RGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 133 ~~lL-~~~D~~vv~~ac~als~L~d~~~~-~~~~i~~l~~~glv~~Lv~LL 181 (256)
.+.. ...||++.+-+-.|+..|...... ..+.+......+-+......+
T Consensus 300 ~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (986)
T 2iw3_A 300 KSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVV 350 (986)
T ss_dssp HHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHH
Confidence 7765 468999999999998888655433 334455555555444443333
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.42 E-value=4.3 Score=35.22 Aligned_cols=126 Identities=11% Similarity=0.086 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHH
Q psy15268 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLAS 87 (256)
Q Consensus 8 ~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~a 87 (256)
+.-+ +-||++--++...|+-.+.+ ||.+-.-+. +. .....=-.-.+||.|++-+|.. -.+...-
T Consensus 85 pltq-eIa~a~G~la~i~Pe~v~~v------Vp~lfanyr--ig-----d~kikIn~~yaLeeIaranP~l--~~~v~rd 148 (253)
T 2db0_A 85 PLTQ-EIAKAFGQMAKEKPELVKSM------IPVLFANYR--IG-----DEKTKINVSYALEEIAKANPML--MASIVRD 148 (253)
T ss_dssp HHHH-HHHHHHHHHHHHCHHHHHHH------HHHHHHHSC--CC-----SHHHHHHHHHHHHHHHHHCHHH--HHHHHHH
T ss_pred chHH-HHHHHHhHHHHhCHHHHHhh------HHHHHHHHh--cC-----CccceecHHHHHHHHHHhChHH--HHHHHHH
Confidence 3444 66666666666666666442 366665554 21 2333333446667776666541 1222223
Q ss_pred HHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 88 VLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 88 lL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
++..+.. .-..- -.++-|.-..+....+ +|.+.+|-|-.||+-.|.-|...|.-++..++.-
T Consensus 149 i~smlts-kd~~D-------kl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 149 FMSMLSS-KNRED-------KLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHHTSC-SSHHH-------HHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcC-CChHH-------HHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 3333321 11112 2344577777766665 9999999999999999999999999999998854
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.86 E-value=2.2 Score=39.28 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhc----ccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHH
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIK----QHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEAL 132 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ld----ff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L 132 (256)
..-++--|+.+|++|.-.. .++++..++. .-...+-+ +|+..+.++++.. ++.++.+++.+
T Consensus 117 N~~iR~lALRtL~~I~~~~--------m~~~l~~~lk~~L~d~~pyVRk----~A~l~~~kL~~~~---pe~v~~~~~~l 181 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDST--------MLQAIERYMKQAIVDKVPSVSS----SALVSSLHLLKCS---FDVVKRWVNEA 181 (355)
T ss_dssp CHHHHHHHHHHHHHHCCTT--------THHHHHHHHHHHHTCSSHHHHH----HHHHHHHHHTTTC---HHHHHTTHHHH
T ss_pred cHhHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHhccC---HHHHHHHHHHH
Confidence 4456667788888874332 2334444443 22344455 9999999998553 23788999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 133 SLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 133 ~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
..++...++-|+-.|..++..+...
T Consensus 182 ~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 182 QEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhh
Confidence 9999999999999888888888753
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=87.54 E-value=5.7 Score=35.27 Aligned_cols=148 Identities=10% Similarity=0.115 Sum_probs=99.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc--h
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG--S 78 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~--~ 78 (256)
||.+.|+..+. .|--+|-.++...|..++.. ....-+|.++..+. ..+.-++=-|+.+|+-|-...|- .
T Consensus 41 LL~dkD~~vk~-raL~~LeellK~~~~~l~~~-~~e~~Ld~iI~llk-------~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 41 LAGEDDETTRL-RAFVALGEILKRADSDLRMM-VLERHLDVFINALS-------QENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HTTSSCHHHHH-HHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHTCC-------STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHhccchHHHH-HHHHHHHHHHHhccccccHH-HHHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46778888888 88899999999988888763 46777899988665 44788999999999998877552 1
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHH-HhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVS-RLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vs-NlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
-+.. ...++...+. .++ -.+|.-+ -.-.+. +.-..++.+.-.|..++.+.|.++-.-+..+|..++..
T Consensus 112 ~y~K-l~~aL~dlik-----~~~----~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLK-AAKTLVSLLE-----SPD----DMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH-HHHHHHHHTT-----SCC----HHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHH-HHHHHHHHhc-----CCC----chHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 1100 1122222221 333 3333321 111222 22235778888888999999999999999999999854
Q ss_pred ccCCCCCccchh
Q psy15268 158 FTRRGVDPAPLA 169 (256)
Q Consensus 158 ~~~~~~~i~~l~ 169 (256)
+.+++.++.++
T Consensus 181 -S~D~~i~~~I~ 191 (265)
T 3b2a_A 181 -SADSGHLTLIL 191 (265)
T ss_dssp -CSSCCCGGGTT
T ss_pred -cCCHHHHHHHH
Confidence 33455565554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.95 E-value=7.3 Score=40.61 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhh-cccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHH
Q psy15268 56 TSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFI-KQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSL 134 (256)
Q Consensus 56 ~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~l-dff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~ 134 (256)
+..|+...|+.+||.|.-..+.. +..++..+ +....++-| .|.+++..+|-+.+ -.+++..|..
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~------v~rlv~~L~~~~d~~VR~----gAalALGli~aGn~-----~~~aid~L~~ 654 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTT------VPRIVQLLSKSHNAHVRC----GTAFALGIACAGKG-----LQSAIDVLDP 654 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSS------HHHHTTTGGGCSCHHHHH----HHHHHHHHHTSSSC-----CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCHHH------HHHHHHHHHhcCCHHHHH----HHHHHHHHhccCCC-----cHHHHHHHHH
Confidence 35789999999999997655533 33344433 233455555 99999999997753 2778889999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 135 LLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 135 lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+.+-.|..|...|.-++..+.-+-
T Consensus 655 L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HccCCCHHHHHHHHHHHHHHhcCC
Confidence 999899999999999999998773
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=86.59 E-value=5.3 Score=41.29 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhc--ccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcHHH
Q psy15268 10 VLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSL--GAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLAS 87 (256)
Q Consensus 10 ~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~--~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~a 87 (256)
.+|.|-.||+.+.|+.+.....+.-....+|.+.+.|.. .....+.+..-|.-+++|++|.-+.--.. ...-+.+
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~~~~l~~ 535 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---ESAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---CCTTHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CchhHHH
Confidence 356777899999999876443210012334444443320 12222344677999999999988775322 2345788
Q ss_pred HHHhhcc-cC-----cccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhc
Q psy15268 88 VLLFIKQ-HG-----HSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLR 137 (256)
Q Consensus 88 lL~~ldf-f~-----~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~ 137 (256)
+|.++-. ++ ..++. .|...+.|+|+.-.+.= +++.+++..+..+|.
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~----~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRP----RAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHH----HHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHhccccccCCChhHHH----HHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 8888643 11 23454 78888999998654433 588889988888876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.91 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.86 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.6 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.56 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.51 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.47 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.76 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.6 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.47 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.43 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.16 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.1 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.01 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 96.94 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.73 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.62 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.58 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.48 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.32 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.23 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.87 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.64 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 95.2 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 94.45 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 92.71 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 89.32 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 88.39 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.9e-23 Score=193.50 Aligned_cols=206 Identities=18% Similarity=0.175 Sum_probs=176.7
Q ss_pred CCC-CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---c
Q psy15268 2 LDD-TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---G 77 (256)
Q Consensus 2 L~~-~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~ 77 (256)
|+. .+++.+. +|+|+|+|++.+.++.+.. +++.|++|.|++.|. +++.++.|+|+|+|+||+++++ .
T Consensus 128 l~~~~~~~iq~-~a~~~L~ni~~~~~~~~~~-~~~~g~i~~l~~lL~-------s~~~~i~~~a~~~L~nia~~~~~~r~ 198 (503)
T d1wa5b_ 128 MRENQPEMLQL-EAAWALTNIASGTSAQTKV-VVDADAVPLFIQLLY-------TGSVEVKEQAIWALGNVAGDSTDYRD 198 (503)
T ss_dssp TSTTSCHHHHH-HHHHHHHHHTTSCHHHHHH-HHHTTCHHHHHHHHH-------HCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCHHHHH-HHHHHHHHHHcCCHHHHHH-HHhCCChHHHHHHhc-------CCChhHHHHHHHHHHHHhhhhHHHHH
Confidence 443 4566777 9999999999999999965 679999999999887 3478999999999999999866 4
Q ss_pred hhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 78 ~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.+++.|++.+++.+++.....+++ +++|+++|+|++.++... .+.+++|.|..++.++|++++.++||++++++
T Consensus 199 ~l~~~~~~~~L~~ll~~~~~~~~~----~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~ 274 (503)
T d1wa5b_ 199 YVLQCNAMEPILGLFNSNKPSLIR----TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 274 (503)
T ss_dssp HHHHTTCHHHHHHGGGSCCHHHHH----HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccchhhcccCCHHHHH----HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 688999999999999877666777 999999999998765553 68899999999999999999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHH
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPS 235 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~ 235 (256)
++ .++.++.+++.|+++.+++++.+. ++......++.|..++.+++.
T Consensus 275 ~~---~~~~~~~~~~~~~~~~l~~ll~~~------------------------------~~~v~~~al~~l~nl~~~~~~ 321 (503)
T d1wa5b_ 275 DG---PQEAIQAVIDVRIPKRLVELLSHE------------------------------STLVQTPALRAVGNIVTGNDL 321 (503)
T ss_dssp SS---CHHHHHHHHHTTCHHHHHHGGGCS------------------------------CHHHHHHHHHHHHHHTTSCHH
T ss_pred cC---CchhhhhhhhhhhhhhhhhcccCC------------------------------chhhhhhHHHHHHHHHHHHHH
Confidence 87 456789999999999999999631 235566789999999999999
Q ss_pred HHHHHHhcChHHHHhhhh
Q psy15268 236 ITSDLLHSDLPDAIGCPR 253 (256)
Q Consensus 236 it~~Ll~~~l~~~l~~~~ 253 (256)
.+..+++.++-+.+...+
T Consensus 322 ~~~~~~~~~~l~~l~~ll 339 (503)
T d1wa5b_ 322 QTQVVINAGVLPALRLLL 339 (503)
T ss_dssp HHHHHHHTTHHHHHHHHT
T ss_pred HHHhhhccchHHHHHHHh
Confidence 999999998766666544
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=7.9e-21 Score=170.07 Aligned_cols=207 Identities=18% Similarity=0.238 Sum_probs=173.9
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhh
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFE 81 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~ 81 (256)
++++.+. +|||+|.|++.+.++.+.. +++.|+||.|++.|. .++.++.|+|+|+|+||+.+.+ ..+.+
T Consensus 69 ~~~~v~~-~a~~~L~~la~~~~~~~~~-i~~~~~i~~l~~~L~-------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 139 (434)
T d1q1sc_ 69 DCSPIQF-ESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLA-------SPHAHISEQAVWALGNIAGDGSAFRDLVIK 139 (434)
T ss_dssp GGHHHHH-HHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTT-------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHHhcCChhhhhH-hhhccchhhhhhccc-------cCCHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567777 9999999999999998866 679999999999876 4479999999999999998865 36889
Q ss_pred cCcHHHHHHhhcccCccc-chhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 82 AGGLASVLLFIKQHGHSV-HKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~-qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
.|++..++.++....... ....++++.|.++|+|++.++... ...+++|.|..+++++|+++..+++||+.++++.
T Consensus 140 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~- 218 (434)
T d1q1sc_ 140 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG- 218 (434)
T ss_dssp TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-
T ss_pred hhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh-
Confidence 999999999998654322 234556999999999998766654 6788999999999999999999999999999876
Q ss_pred cCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHH
Q psy15268 159 TRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITS 238 (256)
Q Consensus 159 ~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~ 238 (256)
+++....+.+.|+++.+++++.+. .+......++.|..++.++++...
T Consensus 219 --~~~~~~~~~~~~~~~~Lv~ll~~~------------------------------~~~~~~~al~~l~~l~~~~~~~~~ 266 (434)
T d1q1sc_ 219 --PNERIEMVVKKGVVPQLVKLLGAT------------------------------ELPIVTPALRAIGNIVTGTDEQTQ 266 (434)
T ss_dssp --CHHHHHHHHTTTCHHHHHHHHTCS------------------------------CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --hhhhHHHHhhcccchhcccccccc------------------------------hhhhhhchhhhhhhHHhhhhHHHH
Confidence 346777888999999999999631 235667889999999999999999
Q ss_pred HHHhcChHHHHhhhh
Q psy15268 239 DLLHSDLPDAIGCPR 253 (256)
Q Consensus 239 ~Ll~~~l~~~l~~~~ 253 (256)
.+++.++.+.+.+++
T Consensus 267 ~~~~~~~~~~l~~ll 281 (434)
T d1q1sc_ 267 KVIDAGALAVFPSLL 281 (434)
T ss_dssp HHHHTTGGGGHHHHT
T ss_pred HHHhccccchHHHhh
Confidence 999999777766654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.7e-15 Score=126.70 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhhhcCcHHHH
Q psy15268 12 EVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVFEAGGLASV 88 (256)
Q Consensus 12 ~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl~~G~l~al 88 (256)
+.|..+|.++++. .+..+. .+..|++|.++.++. . .++.++.++++++|++++...+. .+++.|++.++
T Consensus 35 ~~Al~~L~~L~~~-~d~a~~-l~~~gg~~~ll~~ll-~-----s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 35 EGALELLADLCEN-MDNAAD-FCQLSGMHLLVGRYL-E-----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHTTT-T-----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcC-HHHHHH-HHHcCCHHHHHHHHh-C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 3789999999975 444445 468999999998776 3 45899999999999999997663 68899999999
Q ss_pred HHhhccc-CcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCc
Q psy15268 89 LLFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDP 165 (256)
Q Consensus 89 L~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i 165 (256)
+.+++.. ...+++ .|+|+++|+|++.++... .-...+|.|.++|++.|+++...++|++.+++.+ +++..
T Consensus 107 v~lL~~~~~~~v~~----~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~---~~~~~ 179 (264)
T d1xqra1 107 LRLLDRDACDTVRV----KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHK 179 (264)
T ss_dssp HHHHHHCSCHHHHH----HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGH
T ss_pred HHHhhcCCCHHHHH----HHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc---cHHHH
Confidence 9999754 345566 999999999998654332 4566799999999999999999999999999987 46788
Q ss_pred cchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcC
Q psy15268 166 APLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244 (256)
Q Consensus 166 ~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~ 244 (256)
+.+++.|+++.|+++|.+. ++......+..|..|+..+|+..+......
T Consensus 180 ~~~~~~~~v~~L~~lL~~~------------------------------~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRTE------------------------------HSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp HHHHHTTHHHHHHHHHTSC------------------------------CSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred HHHHHhhhHHHHHHHHcCC------------------------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 8999999999999999531 234566789999999999999998887654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=9.3e-15 Score=130.06 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=160.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
++..+++.+. .|+|||.|+.+..++.... +...|++|.|++.+. .+..++.+.++++|++++...+ ..
T Consensus 197 l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~-~~~~~~~~~Lv~ll~-------~~~~~~~~~al~~l~~l~~~~~~~~~~ 267 (434)
T d1q1sc_ 197 LHHNDPEVLA-DSCWAISYLTDGPNERIEM-VVKKGVVPQLVKLLG-------ATELPIVTPALRAIGNIVTGTDEQTQK 267 (434)
T ss_dssp TTCSCHHHHH-HHHHHHHHHTSSCHHHHHH-HHTTTCHHHHHHHHT-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred Hhccccchhh-hHHhhhcccchhhhhhHHH-Hhhcccchhcccccc-------cchhhhhhchhhhhhhHHhhhhHHHHH
Confidence 4566777777 9999999999988877754 679999999999776 3478999999999999987543 46
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCCh--HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQL--PEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v--~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|++..+..+++.....+++ .|+|+++|+|++.+.....+ ..++|.+.+++.+.|.++...|+|++.+++.
T Consensus 268 ~~~~~~~~~l~~ll~~~~~~v~~----~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~ 343 (434)
T d1q1sc_ 268 VIDAGALAVFPSLLTNPKTNIQK----EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 343 (434)
T ss_dssp HHHTTGGGGHHHHTTCSSHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHhhcccchhhhH----HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence 88999999999999876667777 99999999998642222222 3478999999999999999999999999997
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhc-----
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCR----- 231 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~----- 231 (256)
.. +++.+..+++.|+++.|+++|... .+......++.|..+++
T Consensus 344 ~~--~~~~~~~l~~~~~i~~L~~ll~~~------------------------------d~~~~~~~l~~l~~ll~~~~~~ 391 (434)
T d1q1sc_ 344 GG--TVEQIVYLVHCGIIEPLMNLLSAK------------------------------DTKIIQVILDAISNIFQAAEKL 391 (434)
T ss_dssp HS--CHHHHHHHHHTTCHHHHHHHTTSS------------------------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred cC--CHHHHHHHHHCCcHHHHHHHhcCC------------------------------CHHHHHHHHHHHHHHHHHHHhc
Confidence 74 356788899999999999999532 22445566677776654
Q ss_pred -CCHHHHHHHHhcChHHHHhhh
Q psy15268 232 -GSPSITSDLLHSDLPDAIGCP 252 (256)
Q Consensus 232 -~S~~it~~Ll~~~l~~~l~~~ 252 (256)
..+.+...+.+.++.+.|+.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~i~~L 413 (434)
T d1q1sc_ 392 GETEKLSIMIEECGGLDKIEAL 413 (434)
T ss_dssp TCHHHHHHHHHHTTSHHHHHHH
T ss_pred CCcHHHHHHHHHcCCHHHHHHH
Confidence 233455555566677777654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.5e-15 Score=127.67 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=131.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+|+.+. .||++|.|++-+.++.-.. +...|+||.|++.|. .++.++.++|+++|+|++.+++ ..
T Consensus 11 L~~~~~~~~~-~a~~~l~~l~~~~~~~~~~-i~~~g~i~~Lv~lL~-------~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 11 LSSQDEKYQA-IGAYYIQHTCFQDESAKQQ-VYQLGGICKLVDLLR-------SPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHSSCTHHHH-HHHHHHHHHTSSCSSHHHH-HHHTTHHHHHHHHTT-------SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred hCCCCHHHHH-HHHHHHHHHHcCCHHHHHH-HHHCCcHHHHHHHHC-------CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5678899999 9999999999888887755 679999999998765 4489999999999999997655 47
Q ss_pred hhhcCcHHHHHHhhccc-CcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh----------------cCCCH
Q psy15268 79 VFEAGGLASVLLFIKQH-GHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL----------------RHEDT 141 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff-~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL----------------~~~D~ 141 (256)
+.+.||+..++.++..+ ...++. .|.|++.|+++..........+.+|.+...+ .+.|.
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~----~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQK----QLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHH----HHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHCCChHHHHHHHhccCcHHHHH----HHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence 89999999999998754 344566 9999999999864332235566666665543 56789
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 142 HISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 142 ~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
++.+.+++++.+++... ..+...+...|+++.+++++.
T Consensus 158 ~v~~~a~~~l~~~~~~~---~~~~~~~~~~~~i~~l~~ll~ 195 (457)
T d1xm9a1 158 EVFFNATGCLRNLSSAD---AGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHHHHHHTTSH---HHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCc---hHHHHHHHHhccHHHHHHHHh
Confidence 99999999999998653 234455566789999999885
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2e-14 Score=123.60 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=126.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|+..+++.+. .|+++|.+++..+|..... ++..|++|.|++.|. . .++.++.+.++|+|.+++++.+ ..
T Consensus 68 l~s~~~~vr~-~A~~~L~~l~~~~~~~~~~-~~~~~~i~~Lv~lL~-~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~ 139 (264)
T d1xqra1 68 LEAGAAGLRW-RAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLRLLD-R-----DACDTVRVKALFAISCLVREQEAGLLQ 139 (264)
T ss_dssp TTCSSHHHHH-HHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHH-H-----CSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCCHHHHH-HHHHHHHHHHHHHHHHHHH-HHHcCchHHHHHHhh-c-----CCCHHHHHHHHHHHHHHhccchhhHHH
Confidence 5567778888 9999999999999987755 669999999999886 2 3367899999999999998866 36
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCC--hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ--LPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~--v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+.+.||+..++.++......+|+ +++|++.|+|.+.+..... -..++|.|..+|.++|+++.+.|+||+..|++
T Consensus 140 ~~~~~gi~~L~~lL~~~~~~~~~----~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 140 FLRLDGFSVLMRAMQQQVQKLKV----KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHH----HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHhhhhhHHHHHHhcCchHHHH----HHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 88999999999999877677777 9999999999874322222 23479999999999999999999999999997
Q ss_pred hccCCCCCccchhccc
Q psy15268 157 RFTRRGVDPAPLAQHG 172 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~g 172 (256)
.. ++..+.....+
T Consensus 216 ~~---~~~~~~~~~~~ 228 (264)
T d1xqra1 216 DF---PQGVRECREPE 228 (264)
T ss_dssp TC---HHHHHHHHCGG
T ss_pred cC---HHHHHHHHHhh
Confidence 63 44555554443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=2.5e-13 Score=124.74 Aligned_cols=169 Identities=18% Similarity=0.136 Sum_probs=139.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
+...+++.+. .++|+|.++.+..++.... +++.|++|.+++.|. .+...+.+.++++|++|+.... ..
T Consensus 255 l~~~d~~~~~-~~~~~l~~l~~~~~~~~~~-~~~~~~~~~l~~ll~-------~~~~~v~~~al~~l~nl~~~~~~~~~~ 325 (503)
T d1wa5b_ 255 IYSMDTETLV-DACWAISYLSDGPQEAIQA-VIDVRIPKRLVELLS-------HESTLVQTPALRAVGNIVTGNDLQTQV 325 (503)
T ss_dssp TTCCCHHHHH-HHHHHHHHHHSSCHHHHHH-HHHTTCHHHHHHGGG-------CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hccccHHHHH-HHHHHHHhhccCCchhhhh-hhhhhhhhhhhhccc-------CCchhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4456777777 9999999999999988765 679999999999776 3378899999999999987544 36
Q ss_pred hhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCC--hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ--LPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~--v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+++.|++..+..+++.....+++ .+.|+++|+|.+.+..... -..++|.+.+++.+.+.++...|+|+++.++.
T Consensus 326 ~~~~~~l~~l~~ll~~~~~~i~~----~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 326 VINAGVLPALRLLLSSPKENIKK----EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHH----HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHhcCCCHHHHH----HHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 88899999999998766556666 9999999999763221122 25678999999999999999999999999998
Q ss_pred hccCCCCCccchhccccHHHHHHHhcc
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+.....+.++.+++.|+++.|+.+|..
T Consensus 402 ~~~~~~~~~~~l~~~~~l~~l~~~L~~ 428 (503)
T d1wa5b_ 402 GGLQRPDIIRYLVSQGCIKPLCDLLEI 428 (503)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred cccccHHHHHHHHHCCcHHHHHHHhcC
Confidence 765556678899999999999999953
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.9e-13 Score=122.26 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=156.6
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---ch
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GS 78 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~ 78 (256)
|++.+++.+. .|+|+|.|++...+..... +.+.|+||.|++.|. .++.++.+.+.++|.+++.... ..
T Consensus 110 L~~~~~~v~~-~a~~aL~~l~~~~~~~~~~-~~~~g~i~~Lv~lL~-------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 180 (529)
T d1jdha_ 110 LGSPVDSVLF-YAITTLHNLLLHQEGAKMA-VRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp TTCSCHHHHH-HHHHHHHHHHHHCTTHHHH-HHHHTHHHHHHHGGG-------CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCCHHHHH-HHHHHHHHhhcccchhhhH-HHhcCCchHHHHHHH-------ccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5677888888 9999999999988887755 569999999999776 3478999999999999986533 56
Q ss_pred hhhcCcHHHHHHhhcccCc-ccchhhhhHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 79 VFEAGGLASVLLFIKQHGH-SVHKDTLHSAMAVVSRLCSKMEPQDP-QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 79 Vl~~G~l~alL~~ldff~~-~~qr~~l~~a~~~vsNlCr~~~~~~~-~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
+.+.|++.+++.++..... ..+. .+.+++.|++...+.... .-...+|.|..++.+.|+++...++|++..+++
T Consensus 181 ~~~~~~~~~L~~ll~~~~~~~~~~----~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~ 256 (529)
T d1jdha_ 181 ILASGGPQALVNIMRTYTYEKLLW----TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHH----HHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHhcccchHHHHHHHhhhhHHHHH----HHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccc
Confidence 8899999999999976543 3344 899999999864322211 234578999999999999999999999999987
Q ss_pred hccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHH
Q psy15268 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSI 236 (256)
Q Consensus 157 ~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~i 236 (256)
.... .....|.++.|++++.+. .+.......+.|..++.++++.
T Consensus 257 ~~~~------~~~~~~~i~~Lv~ll~~~------------------------------~~~~~~~a~~~L~~l~~~~~~~ 300 (529)
T d1jdha_ 257 AATK------QEGMEGLLGTLVQLLGSD------------------------------DINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp TCTT------CSCCHHHHHHHHHHTTCS------------------------------CHHHHHHHHHHHHHHTTTCHHH
T ss_pred cccc------hhhhhhcchhhhhhcccc------------------------------cHHHHHHHHHHHHhhccchhHH
Confidence 7432 233468999999998531 2245667888999999999998
Q ss_pred HHHHHhcChHHHHhh
Q psy15268 237 TSDLLHSDLPDAIGC 251 (256)
Q Consensus 237 t~~Ll~~~l~~~l~~ 251 (256)
.+.+.+.+..+.+.+
T Consensus 301 ~~~i~~~~~i~~Li~ 315 (529)
T d1jdha_ 301 KMMVCQVGGIEALVR 315 (529)
T ss_dssp HHHHHHTTHHHHHHH
T ss_pred HHHHHHhhhHHHHHH
Confidence 888887774444443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.6e-13 Score=126.53 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=157.2
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc--chh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA--GSV 79 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~--~~V 79 (256)
|.+++++.+. .|+++|.++.... ...+.++...|+||.|++.|. ..+ +.++.|++.++|.+++.+.. ..+
T Consensus 26 L~~~~~~v~~-~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~-~~~-----~~~~~~~a~~~L~~l~~~~~~~~~i 97 (529)
T d1jdha_ 26 LNDEDQVVVN-KAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQ-NTN-----DVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HTCSCHHHHH-HHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHH-HCC-----CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HcCCCHHHHH-HHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHc-CCC-----CHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3456777777 9999999997543 333344445578999999887 433 78999999999999998643 579
Q ss_pred hhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCC--ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q psy15268 80 FEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157 (256)
Q Consensus 80 l~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~--~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~ 157 (256)
+++|+++.++.++......+|+ .|.|++.|+|.+.+.... .-..++|.|..+|+++|+++...+++|+..++.+
T Consensus 98 ~~~g~i~~Li~lL~~~~~~v~~----~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 173 (529)
T d1jdha_ 98 FKSGGIPALVKMLGSPVDSVLF----YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHH----HHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHhCCCCHHHHH----HHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence 9999999999999887777888 999999999986433222 2456899999999999999999999999999865
Q ss_pred ccCCCCCccchhccccHHHHHHHhcccCCCCCCcCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHH
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSIT 237 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it 237 (256)
+.+.-..+.+.|.++.|+++|.+.. .........++|..++. .++..
T Consensus 174 ---~~~~~~~~~~~~~~~~L~~ll~~~~-----------------------------~~~~~~~~~~~l~~ls~-~~~~~ 220 (529)
T d1jdha_ 174 ---NQESKLIILASGGPQALVNIMRTYT-----------------------------YEKLLWTTSRVLKVLSV-CSSNK 220 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCC-----------------------------CHHHHHHHHHHHHHHTT-STTHH
T ss_pred ---hhHHHHHHHhcccchHHHHHHHhhh-----------------------------hHHHHHHHHHHHhhhhc-ccccc
Confidence 3445667788899999999996431 12344566777777765 56666
Q ss_pred HHHHhcChHHHHhhh
Q psy15268 238 SDLLHSDLPDAIGCP 252 (256)
Q Consensus 238 ~~Ll~~~l~~~l~~~ 252 (256)
..+.+.+....|.+.
T Consensus 221 ~~~~~~g~~~~L~~l 235 (529)
T d1jdha_ 221 PAIVEAGGMQALGLH 235 (529)
T ss_dssp HHHHHTTHHHHHHTT
T ss_pred chhhhhhhhhhHHHH
Confidence 777777754444443
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.4e-09 Score=93.54 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=116.7
Q ss_pred CcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhcccc---chhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHH
Q psy15268 37 GAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREA---GSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSR 113 (256)
Q Consensus 37 gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~---~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsN 113 (256)
++||.|++.|. ++..++.+.+.++|+|+|.+.. ..|.+.||+++++..++.....+|+ .|.|++.|
T Consensus 2 ~~ip~lv~~L~-------~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~----~a~~aL~~ 70 (457)
T d1xm9a1 2 LTIPKAVQYLS-------SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ----AAAGALRN 70 (457)
T ss_dssp CCHHHHHHHHH-------SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHH----HHHHHHHH
T ss_pred CCHHHHHHHhC-------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHH----HHHHHHHH
Confidence 67999999887 4478999999999999997543 5799999999999999877777888 99999999
Q ss_pred hcCCCCCCCCChH--HHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcccCCCCCC
Q psy15268 114 LCSKMEPQDPQLP--EAVEALSLLLR-HEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPL 190 (256)
Q Consensus 114 lCr~~~~~~~~v~--~~lP~L~~lL~-~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~~~~~~~~ 190 (256)
++.+.+.....+. ..+|.|..++. +.|+++.+.|+|++..++... .........|+.+-+..++....+...
T Consensus 71 L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~- 145 (457)
T d1xm9a1 71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELIADALPVLADRVIIPFSGWCD- 145 (457)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHHHHHHHHHHHHTTHHHHTCC--
T ss_pred HHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh----hhHHHHHhcccHHHHHHHHhhhhhhhc-
Confidence 9965422112222 24788888764 578999999999999999763 233444444544333333322111100
Q ss_pred cCCCCCCCccccccCCccccccccCcchHHHHHHHHHHHhcCCHHHHHHHHhcCh
Q psy15268 191 NTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDL 245 (256)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~Ls~l~~~S~~it~~Ll~~~l 245 (256)
+ ..........+.......+.|..++.............++
T Consensus 146 ------~--------~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 186 (457)
T d1xm9a1 146 ------G--------NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186 (457)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTH
T ss_pred ------c--------hhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhcc
Confidence 0 0000012233455566777787777665544433333333
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=7.1e-05 Score=72.25 Aligned_cols=141 Identities=9% Similarity=-0.002 Sum_probs=104.4
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccc---hhh
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAG---SVF 80 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~---~Vl 80 (256)
..++...- .|..||..|++|.++..... -...+|.+.+.|. .+...+++.++|+|++++..... .-+
T Consensus 406 s~~~~~re-aa~~alg~i~eg~~~~~~~~--l~~li~~l~~~l~-------d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~ 475 (888)
T d1qbkb_ 406 HHEWVVKE-SGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLS-------DKKALVRSITCWTLSRYAHWVVSQPPDTY 475 (888)
T ss_dssp SSSHHHHH-HHHHHHHHHTTTSHHHHTTT--HHHHHHHHHHHTT-------SSCHHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred cchhHHHH-HHHHHhhhhhhhHHHHhccc--chhhhHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 33444433 78899999999988765331 2345677777665 34789999999999999864322 123
Q ss_pred hcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 81 EAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 81 ~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
-...+..++..+......+|. .|.|++.++|....+.- +++.++++.|...+...+.+....+.-|+..+++..
T Consensus 476 ~~~~l~~ll~~l~d~~~~V~~----~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~ 550 (888)
T d1qbkb_ 476 LKPLMTELLKRILDSNKRVQE----AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 550 (888)
T ss_dssp TTTHHHHHHHHHSSSCHHHHH----HHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCHHHHH----HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 346777888877666666777 99999999998764443 589999999999998888888888888899888864
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00037 Score=59.57 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch----
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS---- 78 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~---- 78 (256)
...+++... .++++|..+++..|+..... -...+..++.... . ..+.+++.+++..+..++......
T Consensus 226 ~~~~~~~~~-~~~~~l~~i~~~~~~~~~~~--l~~~~~~~~~~~~-~-----~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 296 (458)
T d1ibrb_ 226 QCPDTRVRV-AALQNLVKIMSLYYQYMETY--MGPALFAITIEAM-K-----SDIDEVALQGIEFWSNVCDEEMDLAIEA 296 (458)
T ss_dssp TCSSHHHHH-HHHHHHHHHHHHCGGGCTTT--TTTTHHHHHHHHH-H-----CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHh-c-----cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777 99999999999998876321 1233333333333 2 236778888887777765321000
Q ss_pred ------------------------------------------------------------hhhcCcHHHHHHhhcccCcc
Q psy15268 79 ------------------------------------------------------------VFEAGGLASVLLFIKQHGHS 98 (256)
Q Consensus 79 ------------------------------------------------------------Vl~~G~l~alL~~ldff~~~ 98 (256)
.+..-.+..++.++...-.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s 376 (458)
T d1ibrb_ 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN 376 (458)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcC
Confidence 11112345555555432111
Q ss_pred cchhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 99 VHKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 99 ~qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
..-+.-+.|+.++..++.+..+.. +++.+++|.|...+++++++|...||||+.++++.+
T Consensus 377 ~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~ 438 (458)
T d1ibrb_ 377 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 438 (458)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 111112367788888876643332 489999999999999999999999999999999876
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.47 E-value=2.7e-05 Score=57.22 Aligned_cols=108 Identities=10% Similarity=0.097 Sum_probs=78.9
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.|+..-. .|+|+|.++ ...+++.|++.|. .++.++...++|+|+++...
T Consensus 1 L~D~~~~VR~-~A~~aL~~~-------------~~~~~~~L~~~l~-------d~~~~vR~~a~~~L~~~~~~------- 52 (111)
T d1te4a_ 1 MADENKWVRR-DVSTALSRM-------------GDEAFEPLLESLS-------NEDWRIRGAAAWIIGNFQDE------- 52 (111)
T ss_dssp CCSSCCCSSS-SCCSSTTSC-------------SSTTHHHHHHGGG-------CSCHHHHHHHHHHHGGGCSH-------
T ss_pred CCCcCHHHHH-HHHHHHHHh-------------CHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcchh-------
Confidence 4556666665 677766543 2345688887665 33788999999999887432
Q ss_pred cCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy15268 82 AGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCF 151 (256)
Q Consensus 82 ~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~al 151 (256)
+.+..+..++......+.+ .|+|.+..+.. .+++|.|..+++++|+.|...|..+|
T Consensus 53 -~~~~~L~~~l~d~~~~VR~----~a~~aL~~i~~---------~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 53 -RAVEPLIKLLEDDSGFVRS----GAARSLEQIGG---------ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp -HHHHHHHHHHHHCCTHHHH----HHHHHHHHHCS---------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred -hhHHHHHhhhccchhHHHH----HHHHHHHHhCc---------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456777777765666666 89999887732 57889999999999999999988876
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00087 Score=64.35 Aligned_cols=139 Identities=10% Similarity=0.086 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh--cCc
Q psy15268 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE--AGG 84 (256)
Q Consensus 7 p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~--~G~ 84 (256)
.+.+. .+..++..+.++..+.....+....-+|.+...+. ....++.+-++.++|-++...+..+.. ...
T Consensus 636 ~~~~~-~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~-------~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~ 707 (888)
T d1qbkb_ 636 KDFMI-VALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ-------DKMPEVRQSSFALLGDLTKACFQHVKPCIADF 707 (888)
T ss_dssp THHHH-HHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred HHHHH-HHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC-------CCChHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444 66678888888777766554545556777776665 236799999999999998776554322 124
Q ss_pred HHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCC--HHHHHHHHHHHHHhhhh
Q psy15268 85 LASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHED--THISDAALRCFASLSDR 157 (256)
Q Consensus 85 l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D--~~vv~~ac~als~L~d~ 157 (256)
+..++..++.....+.. +|.|.+.-+|.+.+..- +++.++++.|..++++.+ +.|.+++|-|+.||...
T Consensus 708 ~~~l~~~L~~~~~~v~~----~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~ 779 (888)
T d1qbkb_ 708 MPILGTNLNPEFISVCN----NATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 779 (888)
T ss_dssp HHHHHHTCCGGGHHHHH----HHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 44455555543334444 99999999998875433 489999999999998764 55999999999999865
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.0043 Score=49.83 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=86.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhh
Q psy15268 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVF 80 (256)
Q Consensus 1 ~L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl 80 (256)
+|++.||..-. .|+++|..+-+ ..++|.|.+.|. .+..++.+.|+++|+++......
T Consensus 27 ~L~d~~~~vR~-~A~~~L~~~~~------------~~~~~~l~~~l~-------d~~~~vr~~a~~aL~~l~~~~~~--- 83 (276)
T d1oyza_ 27 LLDDHNSLKRI-SSARVLQLRGG------------QDAVRLAIEFCS-------DKNYIRRDIGAFILGQIKICKKC--- 83 (276)
T ss_dssp HTTCSSHHHHH-HHHHHHHHHCC------------HHHHHHHHHHHT-------CSSHHHHHHHHHHHHHSCCCTTT---
T ss_pred HhcCCCHHHHH-HHHHHHHhhCC------------HhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhcccccc---
Confidence 46778888888 99999987632 134699998776 34789999999999998643322
Q ss_pred hcCcHHHHHH-hhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q psy15268 81 EAGGLASVLL-FIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156 (256)
Q Consensus 81 ~~G~l~alL~-~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d 156 (256)
....+..++. +++.....+.+ .|.+.+.++|.+.+ ......+|.+...++..++.|...+++++..+.+
T Consensus 84 ~~~~~~~l~~~~l~d~~~~vr~----~a~~aL~~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~ 153 (276)
T d1oyza_ 84 EDNVFNILNNMALNDKSACVRA----TAIESTAQRCKKNP---IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 153 (276)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHH----HHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ccchHHHHHHHHhcCCChhHHH----HHHHHHHHHccccc---hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch
Confidence 1111222222 23333334455 88999999986532 2567789999999999999999888888776543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00062 Score=61.73 Aligned_cols=135 Identities=10% Similarity=0.032 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcC
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAG 83 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G 83 (256)
+++.+... .|+++|..++....... .....+|.+.+.+. .+....++.++++++.+....+...+...
T Consensus 452 D~~~~VR~-~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~-------~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ 519 (588)
T d1b3ua_ 452 DHVYAIRE-AATSNLKKLVEKFGKEW----AHATIIPKVLAMSG-------DPNYLHRMTTLFCINVLSEVCGQDITTKH 519 (588)
T ss_dssp CSSHHHHH-HHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTT-------CSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHH-HHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 44444444 78888888877544322 12345677765443 33456788888888888776666666777
Q ss_pred cHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 84 GLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 84 ~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.++.++++++..-..+.. ++.+++.+++...++. ..-..+.|.|.++++-+|++|...|+.|+..|.
T Consensus 520 ilp~ll~~~~D~v~nVR~----~a~~~l~~i~~~~~~~-~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 520 MLPTVLRMAGDPVANVRF----NVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp THHHHHHGGGCSCHHHHH----HHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHH----HHHHHHHHHHHHcCcH-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 888888888765556666 8899999998765331 245668888988888899999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.001 Score=60.27 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=108.5
Q ss_pred CCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhc
Q psy15268 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEA 82 (256)
Q Consensus 3 ~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~ 82 (256)
.+.+|.... .||.++..+++..+... ....-+|.|.+.+. .+...+.+.++.+|+.|+.-.+..-...
T Consensus 174 ~D~~~~VR~-~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~-------d~~~~vr~~a~~~l~~i~~~~~~~~~~~ 241 (588)
T d1b3ua_ 174 SDDTPMVRR-AAASKLGEFAKVLELDN----VKSEIIPMFSNLAS-------DEQDSVRLLAVEACVNIAQLLPQEDLEA 241 (588)
T ss_dssp TCSCHHHHH-HHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHT-------CSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred ccCCHHHHH-HHHHHHHHHHHHhcHHH----HHHHHHHHHHHHhc-------CCchhhHHHHHHHHHHhhccCCHHHHHH
Confidence 345666666 99999999998876543 13455676666443 3367899999999999987655444444
Q ss_pred CcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCC
Q psy15268 83 GGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRG 162 (256)
Q Consensus 83 G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~ 162 (256)
-.++.+.+++...+..+++ .+...+.+++...++ +....+++|.+.+++...+++|...++.++..+++.+..
T Consensus 242 ~i~~~l~~~~~D~~~~Vr~----~~~~~l~~l~~~~~~-~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~-- 314 (588)
T d1b3ua_ 242 LVMPTLRQAAEDKSWRVRY----MVADKFTELQKAVGP-EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA-- 314 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHH----HHHHTHHHHHHHHCH-HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT--
T ss_pred HHHHHHHHhcccccHHHHH----HHHHhHHHHHHHhhh-hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhh--
Confidence 4455555555443334444 778888888865432 124467899999999999999999999999999987532
Q ss_pred CCccchhccccHHHHHHHhc
Q psy15268 163 VDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 163 ~~i~~l~~~glv~~Lv~LL~ 182 (256)
+.-....-..+++.+.+++.
T Consensus 315 ~~~~~~~~~~i~~~l~~~~~ 334 (588)
T d1b3ua_ 315 DCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHhhc
Confidence 11122222355666666654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0064 Score=59.19 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=99.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE 81 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~ 81 (256)
|++.||+.+- .|++||.-+....++.. + ...++.|+..|. .+..++.+-+-.+|..|....+.....
T Consensus 54 L~D~~~~Vq~-~A~k~l~~l~~~~~~~~---~--~~l~~~L~~~l~-------~~~~~~r~~~~~~L~~i~~~l~~~~~~ 120 (1207)
T d1u6gc_ 54 LEDKNGEVQN-LAVKCLGPLVSKVKEYQ---V--ETIVDTLCTNML-------SDKEQLRDISSIGLKTVIGELPPASSG 120 (1207)
T ss_dssp TTCSSHHHHH-HHHHHHHHHHTTSCHHH---H--HHHHHHHHHHTT-------CSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred hCCCCHHHHH-HHHHHHHHHHHhCcHhh---H--HHHHHHHHHHhc-------CCchhhhHHHHHHHHHHHHhccccccc
Confidence 5678899888 99999999988877643 1 234577777665 123455666666776665554432222
Q ss_pred cC----cHHHHHHhhcc-cCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q psy15268 82 AG----GLASVLLFIKQ-HGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLS 155 (256)
Q Consensus 82 ~G----~l~alL~~ldf-f~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~ 155 (256)
.+ ....++..+-. .........-..|+-++..+.++.++.- +...++++.|...+.+.++.|...|+.|++.++
T Consensus 121 ~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~ 200 (1207)
T d1u6gc_ 121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 200 (1207)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 22 22222222211 1111111112266777777766654433 478899999999999999999999999999999
Q ss_pred hhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 156 DRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 156 d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
..+. .+.++ .+++.+++.|..
T Consensus 201 ~~~~--~~~~~-----~~~~~ll~~l~~ 221 (1207)
T d1u6gc_ 201 MSCG--NIVFV-----DLIEHLLSELSK 221 (1207)
T ss_dssp TTC------CT-----THHHHHHHHHHH
T ss_pred HHCC--HHHHH-----HHHHHHHHHHcc
Confidence 7652 23333 456777777753
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.017 Score=53.04 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh---cCcHHHHH
Q psy15268 13 VTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE---AGGLASVL 89 (256)
Q Consensus 13 ~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~---~G~l~alL 89 (256)
.|..+|..+....++..- ...+|.+.+.+. .+.....|-++++++.++.......++ ...+..++
T Consensus 347 ~a~~~l~~l~~~~~~~~~-----~~~~~~i~~~l~-------~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 414 (876)
T d1qgra_ 347 AAGVCLMLLATCCEDDIV-----PHVLPFIKEHIK-------NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414 (876)
T ss_dssp HHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTT-------CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhh-----hhhHHHHHHhhc-------cchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 677777777765554331 112344444443 346778888999999987643322222 34456666
Q ss_pred HhhcccCcccchhhhhHHHHHHHHhcCCCCCCC---CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhcc
Q psy15268 90 LFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD---PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFT 159 (256)
Q Consensus 90 ~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~---~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~ 159 (256)
.++......++. .|+|++.++|...++.. ..+..+++.+.+.++ +++++...+||++.++++...
T Consensus 415 ~~l~d~~~~vr~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~ 482 (876)
T d1qgra_ 415 ELMKDPSVVVRD----TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHTCSSHHHHH----HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCccHHHH----HHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 666654455555 89999999998764432 378999999988775 479999999999999998653
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.02 Score=48.28 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 124 QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 124 ~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
.+..++|.+.+.++++|.++.+.|+.+|..++++.. ++.++..+ ..+++.+++.+.+
T Consensus 362 ~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~--~~~~~~~l-~~i~~~l~~~l~d 418 (458)
T d1ibrb_ 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE--PSQLKPLV-IQAMPTLIELMKD 418 (458)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--TTTTCTTT-TTHHHHHHHGGGC
T ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC--HhHHHHHH-HHHHHHHHHHhCC
Confidence 467788889999999999999999999999998742 23444444 3678888888853
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.48 E-value=0.00029 Score=51.38 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCCCChHHHHHHHHHhh
Q psy15268 57 SKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLL 136 (256)
Q Consensus 57 ~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL 136 (256)
+..|.++++++|+++. ..++.+++..++.....+.+ .|+|++.+++. .+++|.|..+|
T Consensus 5 ~~~VR~~A~~aL~~~~---------~~~~~~L~~~l~d~~~~vR~----~a~~~L~~~~~---------~~~~~~L~~~l 62 (111)
T d1te4a_ 5 NKWVRRDVSTALSRMG---------DEAFEPLLESLSNEDWRIRG----AAAWIIGNFQD---------ERAVEPLIKLL 62 (111)
T ss_dssp CCCSSSSCCSSTTSCS---------STTHHHHHHGGGCSCHHHHH----HHHHHHGGGCS---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---------HHHHHHHHHHHcCCCHHHHH----HHHHHHHhcch---------hhhHHHHHhhh
Confidence 4578888999998763 23567888888766666666 89999887652 46889999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhc
Q psy15268 137 RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLS 182 (256)
Q Consensus 137 ~~~D~~vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~ 182 (256)
+++|+.|...|++++..+.+ .+.++.|.+++.
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~--------------~~~~~~L~~ll~ 94 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG--------------ERVRAAMEKLAE 94 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS--------------HHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHhCc--------------cchHHHHHHHHc
Confidence 99999999999999998753 245677777774
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.0033 Score=57.71 Aligned_cols=154 Identities=7% Similarity=0.086 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhh--cCcHHHHH
Q psy15268 12 EVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFE--AGGLASVL 89 (256)
Q Consensus 12 ~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~--~G~l~alL 89 (256)
+.+..++.+++...++.... .-...+|.|+..|. . ...++...++.+++.|+.-.+..+.. ...+..++
T Consensus 616 ~~~l~~l~~l~~~~~~~~~~--~l~~i~p~l~~~l~-~------~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~ 686 (861)
T d2bpta1 616 DDVFYAISALAASLGKGFEK--YLETFSPYLLKALN-Q------VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLA 686 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHH-C------TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH--HHHHHhhHHHHHhC-C------CCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHH
Confidence 37788888988887776533 13456788888777 2 24589999999999998765543322 23456666
Q ss_pred HhhcccCcccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCC--C---------HHHHHHHHHHHHHhhhh
Q psy15268 90 LFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHE--D---------THISDAALRCFASLSDR 157 (256)
Q Consensus 90 ~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~--D---------~~vv~~ac~als~L~d~ 157 (256)
..+.....+. +.-..+++++..+..+..+.- +++.+++|.+...++.. | .++.+.+++++..+..+
T Consensus 687 ~~l~~~~~~~--~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 764 (861)
T d2bpta1 687 QMISNPNARR--ELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHCTTCCT--THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665432221 111267788888777664332 37899999998876543 1 24678999999999988
Q ss_pred ccCCCCCccchhccccHHHHHHHh
Q psy15268 158 FTRRGVDPAPLAQHGLASELLIRL 181 (256)
Q Consensus 158 ~~~~~~~i~~l~~~glv~~Lv~LL 181 (256)
+..+++.+++. ++.+++++
T Consensus 765 ~~~~~~~~~p~-----~~~i~~~i 783 (861)
T d2bpta1 765 LHDKPEALFPY-----VGTIFQFI 783 (861)
T ss_dssp TTTCHHHHGGG-----HHHHHHHH
T ss_pred hcCCHHHHHHH-----HHHHHHHH
Confidence 76544444433 44554444
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.093 Score=47.96 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=90.5
Q ss_pred CCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccch-----
Q psy15268 4 DTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGS----- 78 (256)
Q Consensus 4 ~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~----- 78 (256)
..+++... .+++||..+++..++.... .+.....+.+...+. ....+++.+++..+..|+....+.
T Consensus 228 ~~~~~v~~-~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 298 (876)
T d1qgra_ 228 CPDTRVRV-AALQNLVKIMSLYYQYMET-YMGPALFAITIEAMK-------SDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (876)
T ss_dssp CSSHHHHH-HHHHHHHHHHHHSGGGCHH-HHTTTHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666 9999999999999988754 223444444444333 236778888777666665421110
Q ss_pred -----------------------------------------------------------hhhcCcHHHHHHhhcccCccc
Q psy15268 79 -----------------------------------------------------------VFEAGGLASVLLFIKQHGHSV 99 (256)
Q Consensus 79 -----------------------------------------------------------Vl~~G~l~alL~~ldff~~~~ 99 (256)
.+....+..++.++...-.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 378 (876)
T d1qgra_ 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (876)
T ss_dssp HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Confidence 111233444555544221111
Q ss_pred chhhhhHHHHHHHHhcCCCCCCC--CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 100 HKDTLHSAMAVVSRLCSKMEPQD--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 100 qr~~l~~a~~~vsNlCr~~~~~~--~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
..+.-+.+.+.+..+..+..+.. +.+.+++|.+...++.+++.|...++|++.++++.+
T Consensus 379 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T d1qgra_ 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence 11112355666666555443333 268889999999999999999999999999999875
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.025 Score=51.59 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=94.9
Q ss_pred CCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCc
Q psy15268 5 TAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGG 84 (256)
Q Consensus 5 ~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~ 84 (256)
.++.... .|..++..++++....... -.....+|.+.+.|. .+...+.+.++|+++.++...+..+.....
T Consensus 381 ~~~~~~~-~a~~~l~~i~~~~~~~~~~-~~l~~~l~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T d2bpta1 381 DNWRNRE-AAVMAFGSIMDGPDKVQRT-YYVHQALPSILNLMN-------DQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp SSHHHHH-HHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHHHH-HHHHHHHHHHhhcchhhHH-HHHHHHHHHHHHHhc-------CcchhhhhHHHHHHHHHHHHhchhhhhHHh
Confidence 3334444 7888899999877655422 223456788887665 336899999999999999887776666666
Q ss_pred HHHHHHhhcc-c--CcccchhhhhHHHHHHHHhcCCCCCCC-----CChHHHHHHHHHhhc--CCCHHHHHHHHHHHHHh
Q psy15268 85 LASVLLFIKQ-H--GHSVHKDTLHSAMAVVSRLCSKMEPQD-----PQLPEAVEALSLLLR--HEDTHISDAALRCFASL 154 (256)
Q Consensus 85 l~alL~~ldf-f--~~~~qr~~l~~a~~~vsNlCr~~~~~~-----~~v~~~lP~L~~lL~--~~D~~vv~~ac~als~L 154 (256)
+..++..+-. + ....++ .+.|++.+++.+..... ......++.|..... ..+..+.+.+..++..+
T Consensus 452 ~~~ll~~l~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~ 527 (861)
T d2bpta1 452 LPGVVQACLIGLQDHPKVAT----NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp HHHHHHHHHHHHTSCHHHHH----HHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred hhhhhHHHHhccccChHHHH----HHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 6666665531 1 233444 78888888876543322 245566666655543 34577999999999999
Q ss_pred hhhc
Q psy15268 155 SDRF 158 (256)
Q Consensus 155 ~d~~ 158 (256)
++..
T Consensus 528 i~~~ 531 (861)
T d2bpta1 528 VEYA 531 (861)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8774
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.018 Score=55.84 Aligned_cols=138 Identities=11% Similarity=0.132 Sum_probs=93.8
Q ss_pred CchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccccchhhhcCcH
Q psy15268 6 APENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGL 85 (256)
Q Consensus 6 ~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l 85 (256)
++.... +|..+|..++...+..... .....++.|...|. .+...+++.|+++|+.++...++..+. ..+
T Consensus 144 ~~~v~~-~al~~l~~l~~~~g~~l~~--~~~~il~~l~~~l~-------~~~~~vR~~A~~~l~~l~~~~~~~~~~-~~~ 212 (1207)
T d1u6gc_ 144 DVSVQL-EALDIMADMLSRQGGLLVN--FHPSILTCLLPQLT-------SPRLAVRKRTIIALGHLVMSCGNIVFV-DLI 212 (1207)
T ss_dssp CHHHHH-HHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGG-------CSSHHHHHHHHHHHHHHTTTC----CT-THH
T ss_pred CHHHHH-HHHHHHHHHHHHhhHhhHH--HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHCCHHHHH-HHH
Confidence 334444 7777777777655543321 01223455544443 346789999999999998876654443 345
Q ss_pred HHHHHhhcccC-cccchhhhhHHHHHHHHhcCCCCCCC-CChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 86 ASVLLFIKQHG-HSVHKDTLHSAMAVVSRLCSKMEPQD-PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 86 ~alL~~ldff~-~~~qr~~l~~a~~~vsNlCr~~~~~~-~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
..++..+.... ....| .++..+.-+||..+..- +++.+++|.+.+.++.+|.++.+.++.++..+....
T Consensus 213 ~~ll~~l~~~~~~~~~~----~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 283 (1207)
T d1u6gc_ 213 EHLLSELSKNDSMSTTR----TYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 283 (1207)
T ss_dssp HHHHHHHHHTCSSCSCT----THHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHccCCCHHHHH----HHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence 66666665433 33445 78889999998764433 489999999999999999999999999999998774
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=1.4 Score=34.12 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHHHhccCchhhhHHHHhCCcHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHhccc
Q psy15268 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTRE 75 (256)
Q Consensus 2 L~~~~p~~~l~~AaraLTni~~~~p~~t~~ivv~~gAVp~L~~~L~~~i~~~~~~~~DlaEQal~aLe~Is~d~ 75 (256)
|++.+++... .|+++|.++.......- . + ++.+..++. .- ++.++...++++|+++....
T Consensus 59 l~d~~~~vr~-~a~~aL~~l~~~~~~~~-~-~-----~~~l~~~~l-~d-----~~~~vr~~a~~aL~~~~~~~ 118 (276)
T d1oyza_ 59 CSDKNYIRRD-IGAFILGQIKICKKCED-N-V-----FNILNNMAL-ND-----KSACVRATAIESTAQRCKKN 118 (276)
T ss_dssp HTCSSHHHHH-HHHHHHHHSCCCTTTHH-H-H-----HHHHHHHHH-HC-----SCHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHH-HHHHHHHHhcccccccc-c-h-----HHHHHHHHh-cC-----CChhHHHHHHHHHHHHcccc
Confidence 4566777777 99999998865444333 2 2 245666665 32 37789999999999887654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.32 E-value=2 Score=39.62 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHHHHHhccccchhhhcCcHHHHHHhhcccCcccchhhhhHHHHHHHHhcCCCCCCC------------
Q psy15268 55 RTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQD------------ 122 (256)
Q Consensus 55 ~~~~DlaEQal~aLe~Is~d~~~~Vl~~G~l~alL~~ldff~~~~qr~~l~~a~~~vsNlCr~~~~~~------------ 122 (256)
.++.-++..++|+++..+.......+ ...+..++.++......++. .|.|++.++|.......
T Consensus 469 ~~~~~lr~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~L~~~~~~V~~----~a~~al~~~~~~~~~~~~~~~~~~~~~l~ 543 (959)
T d1wa5c_ 469 IPHIILRVDAIKYIYTFRNQLTKAQL-IELMPILATFLQTDEYVVYT----YAAITIEKILTIRESNTSPAFIFHKEDIS 543 (959)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHH-HHHHHHHHHHTTCSCHHHHH----HHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred CchHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHhCCCchhHHH----HHHHHHHHHHHhhcccccchhhccHHHHH
Confidence 34677999999999999887554433 34677777777655555566 89999999997543221
Q ss_pred CChHHHHHHHHHhhcCCCH---H--HHHHHHHHHHHhhhhccCCCCCccchhccccHHHHHHHhcc
Q psy15268 123 PQLPEAVEALSLLLRHEDT---H--ISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183 (256)
Q Consensus 123 ~~v~~~lP~L~~lL~~~D~---~--vv~~ac~als~L~d~~~~~~~~i~~l~~~glv~~Lv~LL~~ 183 (256)
+++.+.+..|...+..... + ..+.+..++.++++.+. +.+.+..+ .+++.+++++..
T Consensus 544 p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~---~~~~~~~~-~i~~~l~~~~~~ 605 (959)
T d1wa5c_ 544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE---DSIQPLFP-QLLAQFIEIVTI 605 (959)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT---TTTGGGHH-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHH
Confidence 2566777767666543322 2 23568888899888863 45655543 567777777753
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.39 E-value=0.5 Score=43.93 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=44.8
Q ss_pred hHHHHHHHHhcCCCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhc
Q psy15268 105 HSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRF 158 (256)
Q Consensus 105 ~~a~~~vsNlCr~~~~~~~~v~~~lP~L~~lL~~~D~~vv~~ac~als~L~d~~ 158 (256)
+.+.|+++..|....+ +...+++|.+.+.|+.++..|...||||+.++.+..
T Consensus 476 ~~~~~~i~~~~~~~~~--~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~ 527 (959)
T d1wa5c_ 476 VDAIKYIYTFRNQLTK--AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (959)
T ss_dssp HHHHHHHHHTGGGSCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhhccH--HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 4899999999876532 367899999999999999999999999999999764
|