Psyllid ID: psy15275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccEEEEEEEcccccccEEEEccccEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccEEEEEEEEEccccccEEEEEcccccccccccEEEEccccccHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHccccEEEEEEcccEEEEEEEccEEEccEEEEcccccEEEEcccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEEEEEEccccccEEEEEEcccccEEccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccEccccccEEEEEEEcccEEEEEEccccc
Coil and Loop (DISEMBL)
msimtynggsIVAMTgkncvaiacdkrfgiqgtaLADNFQKIFQVGshmyvglpglatdtqTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMlyerrfgpyfvepmvvgldpetaepiignmdligcvnqpsdfvvggpcsdqlygmcetlwepnlepddLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD
Flexible Loop (DISEMBL)
msimtyngGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNlyelkenrkmspKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYiieqdkvtvrhvktrmd
Low Complexity Region (SEG)
MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD
Disordered region (IsUnstruct)
****TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIF***********GLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRH******
Disordered Region (DISOPRED)
MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRM*
Disordered Region (DISEMBL)
MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD
Disordered Region (DISPRO)
*SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9XYN7	205	Proteasome subunit beta t	yes	N/A	1.0	1.0	0.639	1e-78
O73817	205	Proteasome subunit beta t	N/A	N/A	1.0	1.0	0.614	2e-78
P49720	205	Proteasome subunit beta t	yes	N/A	1.0	1.0	0.604	3e-77
P40112	205	Proteasome subunit beta t	yes	N/A	1.0	1.0	0.6	7e-77
Q9R1P1	205	Proteasome subunit beta t	yes	N/A	1.0	1.0	0.6	7e-77
P33672	205	Proteasome subunit beta t	yes	N/A	1.0	1.0	0.6	9e-77
P25451	205	Proteasome subunit beta t	yes	N/A	0.965	0.965	0.557	1e-67
Q9Y7T8	204	Probable proteasome subun	yes	N/A	0.995	1.0	0.551	4e-65
Q23237	204	Proteasome subunit beta t	yes	N/A	0.995	1.0	0.531	2e-60
O65084	204	Proteasome subunit beta t	N/A	N/A	0.995	1.0	0.492	2e-60

>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=2 SV=1

 Score =  292 bits (748), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 164/205 (80%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG +VAM GK+CVAIA D RFGIQ   ++ +F+K+F +G  M++GL GL TD 
Sbjct: 1   MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDI 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
            TV  ++ FR+NLYE +ENR+M PK   AM+S+ LYE RFGPYF+EP+V GLDP+T EP 
Sbjct: 61  LTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMDLIGC N P DFVV G C++QLYGMCETLW+P+LEPD LFE IAQ++VNA +R+A+
Sbjct: 121 ICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAM 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA VYIIE+DK+T R +KTRMD
Sbjct: 181 SGWGATVYIIEKDKITERTLKTRMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 126/205 (61%), Positives = 168/205 (81%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GK CVAIA D+RFG+Q   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ PK  ++M+SN+LYERRFGPY++EP++ GLDP+T EP 
Sbjct: 61  QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G CS+Q+YGMCE+LWEP++EP+DLFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G VV +IE+DK+T R +K RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Oncorhynchus mykiss (taxid: 8022)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2

 Score =  287 bits (735), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 124/205 (60%), Positives = 168/205 (81%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1

 Score =  286 bits (732), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MS+M+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1

 Score =  286 bits (732), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V++IE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3

 Score =  286 bits (731), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P25451|PSB3_YEAST Proteasome subunit beta type-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUP3 PE=1 SV=1

 Score =  255 bits (652), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 155/199 (77%), Gaps = 1/199 (0%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           NGG +VAMTGK+CVAIACD R G Q   +++ F+KIF  G H+++G+ GLATD  T+ + 
Sbjct: 8   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
            R++ NLY+LKE R + P+    ++S+ LYERRFGPYFV P+V G++ ++ +P I   DL
Sbjct: 67  FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 126

Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
           IGC+++  DF+V G  SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SGWGAV
Sbjct: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 186

Query: 187 VYIIEQDKVTVRHVKTRMD 205
           VYII++D+V  R++K R D
Sbjct: 187 VYIIKKDEVVKRYLKMRQD 205

The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity. This subunit may participate in the trypsin-like activity of the enzyme complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pup3 PE=3 SV=1

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 148/205 (72%), Gaps = 1/205 (0%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM YNGGS VAM GKNCVAIA D R G+Q  +L +NF K+F +G   Y+GL GLATD 
Sbjct: 1   MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QT+Y+  R++ NLY+ +E R++ PK    ++S+ LYE+RFGPYF  P+V G+  +   P 
Sbjct: 61  QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNT-PF 119

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I   D IGC++   DF+V G  ++QLYGMCE+++EPNLEPDDLFETI+QAL+NA +R+ +
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCI 179

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWG VVY+I  DK   R VK R D
Sbjct: 180 SGWGCVVYVITADKCIKRLVKGRQD 204

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=1 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 143/205 (69%), Gaps = 1/205 (0%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+Y GG++VAM G  CV IA D R G Q T +A + +K+ +V   +YVGL G  +D 
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           +TV +KI FR+NLYEL+ENR + P+VL  MISN+ Y+ RFG YF EP+V GLD +T +P 
Sbjct: 61  RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLD-DTNKPY 119

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I  MD IGCV+ P DFV  G   + L G+CE  W  N++PD+LFE  AQ++++  ER+A 
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAA 179

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGAVVY I +DKV V  +K RMD
Sbjct: 180 SGWGAVVYTITKDKVNVSTIKARMD 204

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 147/205 (71%), Gaps = 1/205 (0%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI  YNG ++VAM GKNC AIA D+R G+Q   +A +FQ+IF++   +YVGL GLATD 
Sbjct: 1   MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QT+YQ+  FR  LY+L+E R M P+   +++S +LYE+RFGPYF +P++ GL  E  +P 
Sbjct: 61  QTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLG-EDDKPF 119

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I  MD IG      DFVV G  ++ LYG CE++++P++EP++LFETI+QAL+++ +R+ +
Sbjct: 120 ICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCL 179

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWG  VY++  ++V  R +K RMD
Sbjct: 180 SGWGGHVYVVSPNQVIERTLKGRMD 204

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Picea mariana (taxid: 3335)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
332375660	205	unknown [Dendroctonus ponderosae]	1.0	1.0	0.721	1e-89
270008657	205	hypothetical protein TcasGA2_TC015205 [T	1.0	1.0	0.746	7e-89
380022329	205	PREDICTED: proteasome subunit beta type-	1.0	1.0	0.707	2e-88
91084563	210	PREDICTED: similar to proteasome beta 3	0.995	0.971	0.745	2e-88
328785087	205	PREDICTED: proteasome subunit beta type-	1.0	1.0	0.702	4e-88
156539935	205	PREDICTED: proteasome subunit beta type-	1.0	1.0	0.712	6e-88
340724396	205	PREDICTED: proteasome subunit beta type-	1.0	1.0	0.707	1e-87
350397681	205	PREDICTED: proteasome subunit beta type-	1.0	1.0	0.702	2e-87
114052162	205	proteasome beta 3 subunit [Bombyx mori]	1.0	1.0	0.702	5e-87
383854573	205	PREDICTED: proteasome subunit beta type-	1.0	1.0	0.692	1e-84

>gi|332375660|gb|AEE62971.1| unknown [Dendroctonus ponderosae]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 181/205 (88%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+TYNGG+++AM G+NCVAIA D+RFG+Q   LA NF+KIF++GSH+YVGLPGLATDT
Sbjct: 1   MSILTYNGGAMLAMKGENCVAIAADRRFGVQAQTLATNFEKIFEMGSHLYVGLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +K+RFR+N+YELKENR MSP+V  AM+S++LYE RFGPYFVEP+V GL+P+T EP 
Sbjct: 61  QTVMEKLRFRKNIYELKENRAMSPRVFSAMVSHLLYENRFGPYFVEPVVAGLEPKTFEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMDLIGC+NQP DFVVGG  S QLYGMCE LWEPNL PD+LFET +QAL+NA +R+AV
Sbjct: 121 ICNMDLIGCINQPKDFVVGGTASAQLYGMCEALWEPNLTPDELFETTSQALINAFDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA VYIIE+DKVT++++KTRMD
Sbjct: 181 SGWGATVYIIEKDKVTIKNLKTRMD 205

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008657|gb|EFA05105.1| hypothetical protein TcasGA2_TC015205 [Tribolium castaneum]

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 177/205 (86%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG++VAM G  CV+IA DKRFGIQ   +A NFQKIF++G H+YVGLPGLATDT
Sbjct: 1   MSILAYNGGAMVAMKGDKCVSIASDKRFGIQAQTIATNFQKIFEMGPHLYVGLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +K+RFR+NLYELKENR MSPKV  AM+SNMLYE RFGP+FVEP+V GLDP T EP 
Sbjct: 61  QTVMEKLRFRKNLYELKENRPMSPKVFSAMLSNMLYENRFGPFFVEPIVAGLDPGTYEPY 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMDLIGC NQP+DFVVGG  S QL+GMCE+LWEPNL PDDLFET +QAL+NA +R+A+
Sbjct: 121 ICNMDLIGCPNQPNDFVVGGTASSQLFGMCESLWEPNLGPDDLFETTSQALINAFDRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGAVVYIIE+DKVTVR +KTRMD
Sbjct: 181 SGWGAVVYIIEKDKVTVRDLKTRMD 205

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022329|ref|XP_003695002.1| PREDICTED: proteasome subunit beta type-3-like [Apis florea]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 181/205 (88%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG+I+AM GKNCVAIA D+RFGIQ   +  +FQKIF++GSH+Y+ LPGLATDT
Sbjct: 1   MSILAYNGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQKIFEMGSHLYLSLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +K+RFR NLYELKENRK+ PK   +M+SN+LYERRFGPYFVEP++ GL+P T EP 
Sbjct: 61  QTVMEKLRFRLNLYELKENRKIHPKAFASMVSNLLYERRFGPYFVEPIIAGLNPNTYEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMDLIGC++  +DFVVGG CS+QLYGMCE+L+EP++EPDDLFETI+QALVNAC+R+A+
Sbjct: 121 ICNMDLIGCISPSNDFVVGGTCSEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA+VYIIE+DK+TV+ +KTRMD
Sbjct: 181 SGWGAIVYIIEKDKITVKTLKTRMD 205

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084563|ref|XP_973600.1| PREDICTED: similar to proteasome beta 3 subunit [Tribolium castaneum]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 176/204 (86%)

Query: 2   SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
           SI+ YNGG++VAM G  CV+IA DKRFGIQ   +A NFQKIF++G H+YVGLPGLATDTQ
Sbjct: 7   SILAYNGGAMVAMKGDKCVSIASDKRFGIQAQTIATNFQKIFEMGPHLYVGLPGLATDTQ 66

Query: 62  TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
           TV +K+RFR+NLYELKENR MSPKV  AM+SNMLYE RFGP+FVEP+V GLDP T EP I
Sbjct: 67  TVMEKLRFRKNLYELKENRPMSPKVFSAMLSNMLYENRFGPFFVEPIVAGLDPGTYEPYI 126

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
            NMDLIGC NQP+DFVVGG  S QL+GMCE+LWEPNL PDDLFET +QAL+NA +R+A+S
Sbjct: 127 CNMDLIGCPNQPNDFVVGGTASSQLFGMCESLWEPNLGPDDLFETTSQALINAFDRDAIS 186

Query: 182 GWGAVVYIIEQDKVTVRHVKTRMD 205
           GWGAVVYIIE+DKVTVR +KTRMD
Sbjct: 187 GWGAVVYIIEKDKVTVRDLKTRMD 210

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785087|ref|XP_624958.3| PREDICTED: proteasome subunit beta type-3-like [Apis mellifera]

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 181/205 (88%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG+I+AM GKNCVAIA D+RFGIQ   +  +FQKIF++GSH+Y+ LPGLATDT
Sbjct: 1   MSILAYNGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQKIFEMGSHLYLSLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +K+RFR NLYELKENRK+ PK   +M+SN+LYERRFGPYFVEP++ GL+P T EP 
Sbjct: 61  QTVMEKLRFRLNLYELKENRKIHPKAFASMVSNLLYERRFGPYFVEPIIAGLNPNTYEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMDLIGC++  +DFVVGG C++QLYGMCE+L+EP++EPDDLFETI+QALVNAC+R+A+
Sbjct: 121 ICNMDLIGCISPSNDFVVGGTCTEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA+VYIIE+DK+TV+ +KTRMD
Sbjct: 181 SGWGAIVYIIEKDKITVKTLKTRMD 205

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156539935|ref|XP_001599218.1| PREDICTED: proteasome subunit beta type-3-like isoform 1 [Nasonia vitripennis]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 146/205 (71%), Positives = 179/205 (87%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG+I+AM GKNCVAIA D+RFGIQ   ++ NFQKI+++G H+Y+GLPGLATD+
Sbjct: 1   MSILAYNGGAIIAMKGKNCVAIAADRRFGIQAQTISCNFQKIYEMGPHLYLGLPGLATDS 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +++RFR NLYELKE+R + PK   +MISN+LYERRFGPYFVEP+V GLDPET EP 
Sbjct: 61  QTVMERLRFRLNLYELKESRTIHPKTFGSMISNLLYERRFGPYFVEPIVAGLDPETFEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMDLIGC+N P DFVVGG CS+QLYGMCE L+EPNL+ DDLFETI+QALVNAC+R+A+
Sbjct: 121 ICNMDLIGCLNLPEDFVVGGTCSEQLYGMCEALYEPNLDADDLFETISQALVNACDRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA+V+IIE+DK+T R +KTRMD
Sbjct: 181 SGWGAIVHIIEKDKITTRTIKTRMD 205

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724396|ref|XP_003400568.1| PREDICTED: proteasome subunit beta type-3-like [Bombus terrestris]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 179/205 (87%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG+I+AM GKNCVAIA D+RFGIQ   +  +FQKIF++GSH+Y+ LPGLATDT
Sbjct: 1   MSILAYNGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQKIFEMGSHLYLSLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +K+RFR NLYELKENRK+ PK   +M+SN+LYERRFGPYFVEP++ GL P T EP 
Sbjct: 61  QTVMEKLRFRLNLYELKENRKIHPKTFASMVSNLLYERRFGPYFVEPVIAGLSPVTYEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I N+DLIGC++  +DFVVGG CS+QLYGMCE+L+EP++EPDDLFETI+QALVNAC+R+A+
Sbjct: 121 ICNVDLIGCISPSNDFVVGGTCSEQLYGMCESLFEPDMEPDDLFETISQALVNACDRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA+VYIIE+DKVT R +KTRMD
Sbjct: 181 SGWGAIVYIIEKDKVTTRTIKTRMD 205

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397681|ref|XP_003484954.1| PREDICTED: proteasome subunit beta type-3-like [Bombus impatiens]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 178/205 (86%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG+I+AM GKNCVAIA D+RFGIQ   +  +FQKIF++GSH+Y+ LPGLATDT
Sbjct: 1   MSILAYNGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQKIFEMGSHLYLSLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +K+RFR NLYELKENRK+ PK   +M+SN+LYERRFGPYFVEP++ GL P T EP 
Sbjct: 61  QTVMEKLRFRLNLYELKENRKIHPKTFASMVSNLLYERRFGPYFVEPVIAGLSPVTYEPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           + N+DLIGC++   DFVVGG CS+QLYGMCE+L+EP++EPDDLFETI+QALVNAC+R+A+
Sbjct: 121 VCNVDLIGCISPSDDFVVGGTCSEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGA+VYIIE+DKVT R +KTRMD
Sbjct: 181 SGWGAIVYIIEKDKVTTRTIKTRMD 205

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052162|ref|NP_001040460.1| proteasome beta 3 subunit [Bombyx mori] gi|95102980|gb|ABF51431.1| proteasome beta 3 subunit [Bombyx mori]

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 176/205 (85%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSI+ YNGG++VAM G++CVAIA DKRFGIQ   ++ NF K+FQ+G  +YVGLPGLATDT
Sbjct: 1   MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV+Q+++FR NLYELKENR M PK   AM+SN+LYERRFGPYF+EP++ GLDP   +P 
Sbjct: 61  QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           + NMDLIGC N+P DFVV G CS+QLYGMCE LWEPNL+PD+LFETI+QALVNA +R+A+
Sbjct: 121 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDELFETISQALVNAADRDAI 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGAVVYIIE+DK+T +HVKTRMD
Sbjct: 181 SGWGAVVYIIEKDKITEKHVKTRMD 205

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854573|ref|XP_003702795.1| PREDICTED: proteasome subunit beta type-3-like [Megachile rotundata]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 142/205 (69%), Positives = 175/205 (85%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           M I+ YNGG+I+AM GKNCVAIA D+RFGIQ   +  +FQKIF++G H+Y+ LPGLATDT
Sbjct: 1   MGILDYNGGAIIAMRGKNCVAIAADRRFGIQAQTITCDFQKIFEMGPHLYMSLPGLATDT 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV +++RFR NLYELKENRK+ PK   +M+SN+LYERRFGPYFV+P++ GL P T EP 
Sbjct: 61  QTVMERLRFRLNLYELKENRKIHPKTFASMVSNLLYERRFGPYFVQPIIAGLSPVTFEPY 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I NMD+IGC+N   DFVVGG CS+QLYGMCE+++EP+LE DDLFETI+QALVNAC+R+A+
Sbjct: 121 ICNMDVIGCINPSDDFVVGGTCSEQLYGMCESVFEPDLEADDLFETISQALVNACDRDAM 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SGWGAVVYIIE+DKVT R +KTRMD
Sbjct: 181 SGWGAVVYIIEKDKVTTRSIKTRMD 205

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
FB|FBgn0026380	205	Prosbeta3 "Proteasome beta3 su	1.0	1.0	0.639	5.3e-72
UNIPROTKB|O73817	205	psmb3 "Proteasome subunit beta	1.0	1.0	0.614	1.8e-71
ZFIN|ZDB-GENE-040426-2682	205	psmb3 "proteasome (prosome, ma	1.0	1.0	0.609	4.8e-71
UNIPROTKB|E1BYW9	205	PSMB3 "Proteasome subunit beta	1.0	1.0	0.619	7.7e-71
UNIPROTKB|P49720	205	PSMB3 "Proteasome subunit beta	1.0	1.0	0.604	2.1e-70
UNIPROTKB|E2QX17	205	PSMB3 "Proteasome subunit beta	1.0	1.0	0.604	2.6e-70
MGI|MGI:1347014	205	Psmb3 "proteasome (prosome, ma	1.0	1.0	0.6	3.3e-70
RGD|61875	205	Psmb3 "proteasome (prosome, ma	1.0	1.0	0.6	3.3e-70
UNIPROTKB|P40112	205	Psmb3 "Proteasome subunit beta	1.0	1.0	0.6	3.3e-70
UNIPROTKB|P33672	205	PSMB3 "Proteasome subunit beta	1.0	1.0	0.6	5.5e-70

FB|FBgn0026380 Prosbeta3 "Proteasome beta3 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 131/205 (63%), Positives = 164/205 (80%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSI+ YNGG +VAM GK+CVAIA D RFGIQ   ++ +F+K+F +G  M++GL GL TD 
Sbjct:     1 MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDI 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
              TV  ++ FR+NLYE +ENR+M PK   AM+S+ LYE RFGPYF+EP+V GLDP+T EP 
Sbjct:    61 LTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I NMDLIGC N P DFVV G C++QLYGMCETLW+P+LEPD LFE IAQ++VNA +R+A+
Sbjct:   121 ICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAM 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SGWGA VYIIE+DK+T R +KTRMD
Sbjct:   181 SGWGATVYIIEKDKITERTLKTRMD 205

GO:0005839 "proteasome core complex" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS;NAS

GO:0000502 "proteasome complex" evidence=NAS

GO:0006508 "proteolysis" evidence=NAS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|O73817 psmb3 "Proteasome subunit beta type-3" [Oncorhynchus mykiss (taxid:8022)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 126/205 (61%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GK CVAIA D+RFG+Q   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ PK  ++M+SN+LYERRFGPY++EP++ GLDP+T EP 
Sbjct:    61 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEP++EP+DLFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G VV +IE+DK+T R +K RMD
Sbjct:   181 SGMGVVVQVIEKDKITTRTLKARMD 205

GO:0005839 "proteasome core complex" evidence=ISS

ZFIN|ZDB-GENE-040426-2682 psmb3 "proteasome (prosome, macropain) subunit, beta type, 3" [Danio rerio (taxid:7955)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 125/205 (60%), Positives = 169/205 (82%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GK CVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMRGKECVAIASDRRFGIQAQLVTTDFQKIFPMGERLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P+  ++M+SN+LYERRFGPY++EP++ GLDP+T EP 
Sbjct:    61 QTVSQRLKFRLNLYELKEGRQIKPRTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEP+++P+DLFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMKPEDLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G VV++IE+DK+T R +K RMD
Sbjct:   181 SGMGVVVHVIEKDKITTRTLKARMD 205

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E1BYW9 PSMB3 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 127/205 (61%), Positives = 167/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMRGKNCVAIASDRRFGIQAQMVTTDFQKIFPMGERLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P+  ++M+SN+LYERRFGPY+ EP++ GLDP T EP 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRFGPYYTEPVIAGLDPITHEPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEP++EPD LFETI+QA++NA +R+A+
Sbjct:   121 ICSLDLIGCPMITEDFVVSGTCSEQMYGMCESLWEPDMEPDHLFETISQAMLNAVDRDAI 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G VV+IIE+DK+T R +K RMD
Sbjct:   181 SGMGVVVHIIEKDKITTRTLKARMD 205

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P49720 PSMB3 "Proteasome subunit beta type-3" [Homo sapiens (taxid:9606)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 124/205 (60%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G +V+IIE+DK+T R +K RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|E2QX17 PSMB3 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 124/205 (60%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G +V+IIE+DK+T R +K RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

MGI|MGI:1347014 Psmb3 "proteasome (prosome, macropain) subunit, beta type 3" [Mus musculus (taxid:10090)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G +V++IE+DK+T R +K RMD
Sbjct:   181 SGMGVIVHVIEKDKITTRTLKARMD 205

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=TAS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

RGD|61875 Psmb3 "proteasome (prosome, macropain) subunit, beta type 3" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MS+M+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G +V+IIE+DK+T R +K RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA;ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P40112 Psmb3 "Proteasome subunit beta type-3" [Rattus norvegicus (taxid:10116)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MS+M+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G +V+IIE+DK+T R +K RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P33672 PSMB3 "Proteasome subunit beta type-3" [Bos taurus (taxid:9913)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 123/205 (60%), Positives = 168/205 (81%)

Query:     1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct:     1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query:    61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
             QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct:    61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query:   121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
             I ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
             SG G +V+IIE+DK+T R +K RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LST7	PSB3_ORYSJ	3, ., 4, ., 2, 5, ., 1	0.4878	0.9951	1.0	yes	N/A
A9A788	PSB_METM6	3, ., 4, ., 2, 5, ., 1	0.2565	0.9170	0.8584	yes	N/A
A3MXQ6	PSB2_PYRCJ	3, ., 4, ., 2, 5, ., 1	0.2639	0.9463	0.9556	yes	N/A
P33672	PSB3_BOVIN	3, ., 4, ., 2, 5, ., 1	0.6	1.0	1.0	yes	N/A
Q8TW10	PSB_METKA	3, ., 4, ., 2, 5, ., 1	0.2842	0.9024	0.8809	yes	N/A
P40112	PSB3_RAT	3, ., 4, ., 2, 5, ., 1	0.6	1.0	1.0	yes	N/A
O27270	PSB_METTH	3, ., 4, ., 2, 5, ., 1	0.2631	0.9121	0.8904	yes	N/A
Q9XI05	PSB3A_ARATH	3, ., 4, ., 2, 5, ., 1	0.4682	0.9951	1.0	yes	N/A
A2SS78	PSB_METLZ	3, ., 4, ., 2, 5, ., 1	0.2834	0.9024	0.8726	yes	N/A
O81153	PSB3B_ARATH	3, ., 4, ., 2, 5, ., 1	0.4682	0.9951	1.0	yes	N/A
Q9YES4	PSB1_AERPE	3, ., 4, ., 2, 5, ., 1	0.2425	0.9707	0.9802	yes	N/A
Q55D66	PSB3_DICDI	3, ., 4, ., 2, 5, ., 1	0.4878	1.0	1.0	yes	N/A
O73817	PSB3_ONCMY	3, ., 4, ., 2, 5, ., 1	0.6146	1.0	1.0	N/A	N/A
Q9Y7T8	PSB3_SCHPO	3, ., 4, ., 2, 5, ., 1	0.5512	0.9951	1.0	yes	N/A
Q9P996	PSB_ARCFU	3, ., 4, ., 2, 5, ., 1	0.2910	0.9121	0.8779	yes	N/A
A6VK02	PSB_METM7	3, ., 4, ., 2, 5, ., 1	0.2565	0.9170	0.8584	yes	N/A
A8AB58	PSB2_IGNH4	3, ., 4, ., 2, 5, ., 1	0.2871	0.9317	0.9009	yes	N/A
Q9R1P1	PSB3_MOUSE	3, ., 4, ., 2, 5, ., 1	0.6	1.0	1.0	yes	N/A
A0B5B1	PSB_METTP	3, ., 4, ., 2, 5, ., 1	0.2539	0.9121	0.9033	yes	N/A
D2RGT4	PSB_ARCPA	3, ., 4, ., 2, 5, ., 1	0.2925	0.9073	0.8651	yes	N/A
B8GG66	PSB_METPE	3, ., 4, ., 2, 5, ., 1	0.2751	0.9121	0.8862	yes	N/A
Q0W2D6	PSB_UNCMA	3, ., 4, ., 2, 5, ., 1	0.2708	0.9268	0.9134	yes	N/A
A9A4A1	PSB1_NITMS	3, ., 4, ., 2, 5, ., 1	0.2526	0.9073	0.9393	yes	N/A
B8D673	PSB1_DESK1	3, ., 4, ., 2, 5, ., 1	0.2602	0.9414	0.9554	yes	N/A
Q23237	PSB3_CAEEL	3, ., 4, ., 2, 5, ., 1	0.5317	0.9951	1.0	yes	N/A
A7I841	PSB_METB6	3, ., 4, ., 2, 5, ., 1	0.2659	0.9073	0.8732	yes	N/A
A1RX71	PSB2_THEPD	3, ., 4, ., 2, 5, ., 1	0.2826	0.8634	0.8676	yes	N/A
A4WMZ0	PSB2_PYRAR	3, ., 4, ., 2, 5, ., 1	0.2385	0.9463	0.9556	yes	N/A
A3DN21	PSB1_STAMF	3, ., 4, ., 2, 5, ., 1	0.2713	0.9365	0.9014	yes	N/A
A3CUS9	PSB_METMJ	3, ., 4, ., 2, 5, ., 1	0.25	0.9073	0.8691	yes	N/A
Q8ZST5	PSB2_PYRAE	3, ., 4, ., 2, 5, ., 1	0.2538	0.9463	0.9556	yes	N/A
P25451	PSB3_YEAST	3, ., 4, ., 2, 5, ., 1	0.5577	0.9658	0.9658	yes	N/A
C9REN7	PSB_METVM	3, ., 4, ., 2, 5, ., 1	0.2474	0.9317	0.8565	yes	N/A
P49720	PSB3_HUMAN	3, ., 4, ., 2, 5, ., 1	0.6048	1.0	1.0	yes	N/A
Q2FQL8	PSB_METHJ	3, ., 4, ., 2, 5, ., 1	0.2578	0.9170	0.8995	yes	N/A
D3RX66	PSB_FERPA	3, ., 4, ., 2, 5, ., 1	0.2670	0.9170	0.8952	yes	N/A
A2BN24	PSB1_HYPBU	3, ., 4, ., 2, 5, ., 1	0.2361	0.9365	0.9411	yes	N/A
A5UM14	PSB_METS3	3, ., 4, ., 2, 5, ., 1	0.2580	0.8780	0.8823	yes	N/A
Q9XYN7	PSB3_DROME	3, ., 4, ., 2, 5, ., 1	0.6390	1.0	1.0	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.991
3rd Layer	3.4.25	0.976

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	1e-119
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	5e-68
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	2e-51
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	2e-47
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-46
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	2e-33
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	6e-28
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	2e-26
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	7e-26
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	3e-12
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	4e-11
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	4e-11
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	7e-07
cd01911	209	cd01911, proteasome_alpha, proteasome alpha subuni	4e-04
cd03755	207	cd03755, proteasome_alpha_type_7, proteasome_alpha	8e-04
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	0.001
cd03761	188	cd03761, proteasome_beta_type_5, proteasome beta t	0.001
TIGR03690	219	TIGR03690, 20S_bact_beta, proteasome, beta subunit	0.004

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score =  335 bits (861), Expect = e-119
 Identities = 121/196 (61%), Positives = 159/196 (81%), Gaps = 1/196 (0%)

Query: 6   YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
           YNGG++VAM GK+CVAIA D R G+Q   ++ +FQK+F++G  +Y+GL GLATD QT+ Q
Sbjct: 1   YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQ 60

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
           K+RFR NLY L+E R++ PK   ++IS++LYE+RFGPYFVEP+V GLDP   +P I  MD
Sbjct: 61  KLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDP-DGKPFICTMD 119

Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
           LIGC + PSDFVV G  S+QLYGMCE+LW P++EPD+LFETI+QAL++A +R+A+SGWGA
Sbjct: 120 LIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGA 179

Query: 186 VVYIIEQDKVTVRHVK 201
           VVYII +DKVT R +K
Sbjct: 180 VVYIITKDKVTTRTLK 195

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  206 bits (526), Expect = 5e-68
 Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 2/191 (1%)

Query: 9   GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
            +IV + GK+ V +A D R        + NF KIF++  ++ +G  G A DTQ + + ++
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
               LYEL+  R++S K    ++SN+LY  R  PY+V  +V G+D     P +  +D +G
Sbjct: 61  RNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGG-GPFLYYVDPLG 119

Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
            + + + FV  G  S   YG+ +  ++P++  ++  E + +A+ +A ER+  SG G  V 
Sbjct: 120 SLIE-APFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVA 178

Query: 189 IIEQDKVTVRH 199
           +I +D V    
Sbjct: 179 VITKDGVEELR 189

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  163 bits (415), Expect = 2e-51
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 9   GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
            +IV + GK+ V +A DKR        +   +KIF++  H+     GLA D QT+ +++R
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRF--GPYFVEPMVVGLDPETAEPIIGNMDL 126
               LY L+    +  + L  +++N+LYE      P  V  +V G+D E   P + ++D 
Sbjct: 61  KEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEG-GPQLYSVDP 119

Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
            G   +       G  S    G+ E L++P++  ++  E   +AL +A ER+  SG    
Sbjct: 120 SGSYIEY-KATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIE 178

Query: 187 VYII 190
           V +I
Sbjct: 179 VAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  153 bits (389), Expect = 2e-47
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 5   TYNGGSIVAMTGKNCVAIACDKRFGIQGTALA-DNFQKIFQVGSHMYVGLPGLATDTQTV 63
              G +IV + GK+ V +A DKR       L+ D  +KIF++  H+ +   GLA D QT+
Sbjct: 1   VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTL 60

Query: 64  YQKIRFRQNLYELKENRKMSPKV---LLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
               R    LY L+  R +S ++   +   +          PY V  ++ G D +   P 
Sbjct: 61  VDYARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGG-PH 119

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           + ++D  G V +       G  S   YG  E L++P++  ++  E   +AL  A ER+A+
Sbjct: 120 LYSIDPSGSVIEY-KATAIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDAL 178

Query: 181 SGWGAVVYII 190
           SG    V +I
Sbjct: 179 SGGNIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  152 bits (386), Expect = 2e-46
 Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 5/198 (2%)

Query: 3   IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQT 62
            +   G + V + GK+ V +A DKR        + N +KIF++  H+ + + GLA D Q 
Sbjct: 25  AVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQV 84

Query: 63  VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFG--PYFVEPMVVGLDPETAEPI 120
           + +  R    LY L+    +S + L  ++SN+L E      PY V  +V G+D     P 
Sbjct: 85  LVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDG--GPR 142

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           + + D  G  N        G  S   YG  E  +  +L  ++  E   +AL  A ER+A 
Sbjct: 143 LYSTDPSGSYN-EYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAA 201

Query: 181 SGWGAVVYIIEQDKVTVR 198
           SG G  V +I +D+   +
Sbjct: 202 SGGGIEVAVITKDEGFRK 219

Length = 236

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score =  117 bits (295), Expect = 2e-33
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 9   GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
            + VA+ GK  V +A DKR             KI +    +  GL GLA D QT+ +++R
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFG-PYFVEPMVVGLDPETAEPIIGNMDLI 127
               LY L+    +S   L   ++ +L     G P+ V  +V G+D       +  +D  
Sbjct: 61  EALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEG--GGNLYYIDPS 118

Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQAL 171
           G V +    V  G  S +   + E L++P++  ++  E   +AL
Sbjct: 119 GPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKAL 162

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score =  103 bits (259), Expect = 6e-28
 Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKI 67
           G + V +  K+ V +A DKR  +     + N +K+FQ+  ++ + + G   D Q++ + +
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRIL 60

Query: 68  RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
           +    LYEL+  R MS K L  ++SN+L   RF P+ V+ +V G+D E   P + ++D  
Sbjct: 61  KAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEE--GPHLYSLDPA 118

Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
           G +    D+   G  S   YG+ E  +  ++  ++  +   +A+ +A ER+  SG G  V
Sbjct: 119 GGII-EDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDV 177

Query: 188 YIIEQDKV 195
            +I +D V
Sbjct: 178 AVITKDGV 185

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score =  100 bits (250), Expect = 2e-26
 Identities = 51/189 (26%), Positives = 97/189 (51%), Gaps = 3/189 (1%)

Query: 11  IVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFR 70
            V +  K+ V +A DKR  +     + N +KIFQ+   + + + G   D Q++ + ++  
Sbjct: 3   TVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAE 62

Query: 71  QNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCV 130
             LYEL+  R MS K L  ++SN+L   ++ PY V+ ++ G+D E   P + ++D +G +
Sbjct: 63  ARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDEE--GPHLYSLDPLGSI 120

Query: 131 NQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYII 190
                +   G  S   YG+ E  ++ ++  ++  +   +A+ +A ER++ SG G  V +I
Sbjct: 121 I-EDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVI 179

Query: 191 EQDKVTVRH 199
            +D      
Sbjct: 180 TKDGYKELE 188

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score = 98.9 bits (247), Expect = 7e-26
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 11/210 (5%)

Query: 5   TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
           T NGG+++A+ G +   IA D R     + L+ +  KIF++     +G  G   D   + 
Sbjct: 5   TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALT 64

Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
           ++++ R  +Y+   N++MS + +  ++S +LY RRF PY+V  ++ G+D E  + ++ + 
Sbjct: 65  KRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGID-EEGKGVVYSY 123

Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWE----PNLEPDDLFETIAQALV-----NAC 175
           D +G   +   +  GG  S  +  + +         N+E   L    A +LV     +A 
Sbjct: 124 DPVGSY-ERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAA 182

Query: 176 ERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           ER+  +G    + II +D +       R D
Sbjct: 183 ERDIYTGDSLEIVIITKDGIEEETFPLRKD 212

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +I+A+     V +  D R    G+ +A+    K+ Q+   +Y    G A DTQ +   +R
Sbjct: 2   TIIAVEYDGGVVLGADSRTST-GSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVR 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEP-----MVVGLDPETAEPIIGN 123
           +  +++ ++       K   ++  N+ Y  +      E      +V G D +     + +
Sbjct: 61  YYLDMHSIELGEPPLVKTAASLFKNLCYNYK------EMLSAGIIVAGWDEQN-GGQVYS 113

Query: 124 MDLIG-CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
           + L G  + QP  F +GG  S  +YG  +  ++P +  ++  + +  AL  A  R+  S 
Sbjct: 114 IPLGGMLIRQP--FAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSS- 170

Query: 183 WGAVVY--IIEQDKVT 196
            G V+   II +D V 
Sbjct: 171 -GGVIRLVIITKDGVE 185

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 14/193 (7%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +++ + GK+ V +A D         L D+  KI+++  H  +   G A D     + I+ 
Sbjct: 3   TLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQK 62

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
              LY+++   ++SPK         L E  R   PY V  ++ G D     P +  +D +
Sbjct: 63  NIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDK-VEGPSLYYIDYL 121

Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNAC-----ERNAVSG 182
           G +     +   G  +     + +  ++P++  ++     A  L+  C     +R  ++ 
Sbjct: 122 GTL-VKVPYAAHGYGAYFCLSILDRYYKPDMTVEE-----ALELMKKCIKELKKRFIINL 175

Query: 183 WGAVVYIIEQDKV 195
               V ++++D +
Sbjct: 176 PNFTVKVVDKDGI 188

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ----TV 63
           G S++A+  K+ V IA D        A   N ++IF+VG +  +G  G   D Q     +
Sbjct: 2   GTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLL 61

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPII 121
            Q +       +   +  +SPK + + ++ +LY RR    P +   +V G+D E  EP +
Sbjct: 62  DQLVI-DDECLDDGHS--LSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNE-GEPFL 117

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYG------MCETLWEPNLEPDDLFETIAQALVNAC 175
           G +DL+G   +    V  G      +G      +    WE   +  DL E  A+AL+  C
Sbjct: 118 GYVDLLGTAYE-DPHVATG------FGAYLALPLLREAWE---KKPDLTEEEARALIEEC 167

Query: 176 ER 177
            +
Sbjct: 168 MK 169

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +IV +  K+ V +  D R   +G  +AD N +KI  +  ++Y    G A DT+ V   I 
Sbjct: 2   TIVGVVFKDGVVLGADTR-ATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMIS 60

Query: 69  FRQNLYELKENRKMSPKVLLA--MISNMLYERRFGPYFVEPMVVG 111
               L+ L   RK  P+V+ A  M+   L+  R+  +    +V+G
Sbjct: 61  SNLELHRLNTGRK--PRVVTALTMLKQHLF--RYQGHIGAALVLG 101

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 15/119 (12%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALAD--NFQKIFQVGSHMYVGLPGLATDTQTVY 64
           NG + V + GK+ V +A +K+     + L D  + +KIF++  H+   + GL  D + + 
Sbjct: 26  NGSTAVGIKGKDGVVLAVEKK---VTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLV 82

Query: 65  QKIR-FRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
            + R   QN Y       +  +VL+  I+++          R  P+ V  ++ G D E 
Sbjct: 83  NRARVEAQN-YRYTYGEPIPVEVLVKRIADLAQVYTQYGGVR--PFGVSLLIAGYDEEG 138

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209

>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALAD--NFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
           G + V + GK+CV +  +K+       L D    +KI  +  H+ +   GL  D + +  
Sbjct: 27  GTTAVGVRGKDCVVLGVEKK---SVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLIN 83

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML--YERRFG--PYFVEPMVVGLDP 114
           + R     + L     ++ + +   I+ +   Y +  G  P+ +  ++VG DP
Sbjct: 84  RARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP 136

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 207

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 38/189 (20%), Positives = 83/189 (43%), Gaps = 15/189 (7%)

Query: 6   YNGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVY 64
           Y GG I+A+  K              G  +A  + +K+ ++   +   + G A D     
Sbjct: 47  YGGGIIIAVDSK-----------ATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWE 95

Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
           +++  +  LYEL+    +S      +++N+++  +     +  M+ G D +   P +  +
Sbjct: 96  RELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG--PGLFYV 153

Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
           D  G     + F  G   S   YG+ +  ++ +L  ++  +   +A+ +A  R+A SG  
Sbjct: 154 DNDGTRLHGNMFSCGSG-STYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGA 212

Query: 185 AVVYIIEQD 193
             +Y +++D
Sbjct: 213 INLYHMQKD 221

Length = 247

>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 40  QKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQ-NLYELKENRKMSPKVLLAMISNMLYER 98
           +K+ ++  ++   + G A D Q  ++++  R+  LYEL+   ++S      ++SNMLY+ 
Sbjct: 32  KKVIEINPYLLGTMAGGAADCQY-WERVLGRECRLYELRNKERISVAAASKLLSNMLYQY 90

Query: 99  RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQL--YGMCETLWEP 156
           +     +  M+ G D     P +  +D  G   +   F VG   S     YG+ ++ +  
Sbjct: 91  KGMGLSMGTMICGWDKTG--PGLYYVDSDGTRLKGDLFSVG---SGSTYAYGVLDSGYRY 145

Query: 157 NLEPDDLFETIAQALVNACERNAVSGWGAV-VYIIEQD 193
           +L  ++ ++   +A+ +A  R+A SG G V +Y + +D
Sbjct: 146 DLSVEEAYDLARRAIYHATHRDAYSG-GNVNLYHVRED 182

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPG---LATDTQTV 63
           G +IVA+T    V +A D+R   QG  +A  + +K++    +  VG+ G   LA +   +
Sbjct: 2   GTTIVALTYPGGVLMAGDRR-ATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRL 60

Query: 64  YQ-------KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPET 116
           +Q       KI       + K NR      L AM+   L     G   V P++ G D + 
Sbjct: 61  FQVELEHYEKIEGVPLTLDGKANR------LAAMVRGNLPAAMQG-LAVVPLLAGYDLDA 113

Query: 117 AEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACE 176
               I + D+ G   +   +   G  S    G  + L+ P+L+ DD      +AL +A +
Sbjct: 114 GAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAAD 173

Query: 177 RNAVSG 182
            ++ +G
Sbjct: 174 DDSATG 179

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
KOG0179|consensus	235		100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
KOG0180|consensus	204		100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
KOG0185|consensus	256		100.0
KOG0176|consensus	241		100.0
KOG0174|consensus	224		100.0
KOG0177|consensus	200		100.0
KOG0178|consensus	249		100.0
KOG0173|consensus	271		100.0
KOG0175|consensus	285		100.0
KOG0183|consensus	249		100.0
KOG0181|consensus	233		100.0
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	100.0
KOG0184|consensus	254		100.0
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	100.0
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	100.0
KOG0182|consensus	246		100.0
KOG0863|consensus	264		100.0
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.98
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.76
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.46
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	97.39
COG4079	293	Uncharacterized protein conserved in archaea [Func	96.72
KOG3361|consensus	157		86.28

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=7.9e-54  Score=341.70  Aligned_cols=203  Identities=25%  Similarity=0.464  Sum_probs=195.9

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      .+||.++|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.+.+.++.+++.|++++++
T Consensus         1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~   80 (212)
T cd03757           1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK   80 (212)
T ss_pred             CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence            48999999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC-----
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----  155 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~-----  155 (205)
                      +++++.+++++++++|++|.+||++++|+||||++ ++|+||++||+|++ ++++++|+|+|+++++++||+.|+     
T Consensus        81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~-~~p~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  158 (212)
T cd03757          81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEE-GKGVVYSYDPVGSY-ERETYSAGGSASSLIQPLLDNQVGRKNQN  158 (212)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCC-CCEEEEEEcCccCe-eecCEEEEeecHHHHHHHHHHHHHhhccC
Confidence            99999999999999999888899999999999976 68999999999998 699999999999999999999975     


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        156 ----PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       156 ----~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                          ++||++||++++.+||+.+.+||+.++++++|++|+++|++++.+|+|+|
T Consensus       159 ~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~  212 (212)
T cd03757         159 NVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD  212 (212)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence                89999999999999999999999999999999999999999999999987

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=1.9e-51  Score=324.17  Aligned_cols=193  Identities=61%  Similarity=1.145  Sum_probs=184.1

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      .+|+|+|||+++||||||+|++.+++..+..++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++.+++++
T Consensus         1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~   80 (195)
T cd03759           1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK   80 (195)
T ss_pred             CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            36999999999999999999999999877777899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         86 VLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        86 ~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      .+|++|++++|++|.+||+|++|+||||++ ++|+||++||+|++ ..+. ++|+|+|+++++++||+.|+++|+.+||+
T Consensus        81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~-~~p~Ly~~D~~G~~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~  158 (195)
T cd03759          81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPD-GKPFICTMDLIGCP-SIPSDFVVSGTASEQLYGMCESLWRPDMEPDELF  158 (195)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEEEcCC-CCEEEEEEcCCCcc-cccCCEEEEcccHHHHHHHHHhccCCCCCHHHHH
Confidence            999999999999888999999999999986 68999999999998 4556 88999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEe
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHV  200 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~  200 (205)
                      +++++||+.+.+||+.++++++|++|+++|++++.+
T Consensus       159 ~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~  194 (195)
T cd03759         159 ETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL  194 (195)
T ss_pred             HHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence            999999999999999999999999999999998876

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=2.9e-49  Score=310.03  Aligned_cols=186  Identities=22%  Similarity=0.287  Sum_probs=180.1

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|++.++|.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la   80 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS   80 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|..||+|++|+||||+  .||+||++||+|++ .++++.|+|+|+++++++||+.|+++|+.+||++++.
T Consensus        81 ~~ls~~l~~~~~~~~~v~~li~G~D~--~g~~L~~~dp~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~  157 (188)
T cd03761          81 KLLSNMLYQYKGMGLSMGTMICGWDK--TGPGLYYVDSDGTR-LKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLAR  157 (188)
T ss_pred             HHHHHHHHhcCCCCeEEEEEEEEEeC--CCCEEEEEcCCceE-EEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            99999999999889999999999996  48999999999998 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||+.+.+||..++++++|++|+++|++.
T Consensus       158 ~~l~~~~~rd~~sg~~~~v~ii~~~g~~~  186 (188)
T cd03761         158 RAIYHATHRDAYSGGNVNLYHVREDGWRK  186 (188)
T ss_pred             HHHHHHHHhcccCCCCeEEEEEcCCceEE
Confidence            99999999999999999999999999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=3.6e-49  Score=311.65  Aligned_cols=190  Identities=25%  Similarity=0.350  Sum_probs=180.4

Q ss_pred             cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhh-hhhhhcCCcCCHH
Q psy15275          7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQN-LYELKENRKMSPK   85 (205)
Q Consensus         7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~   85 (205)
                      +|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++|+++|..+|++.+++++|.+++ .++++++.+++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   80 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK   80 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            589999999999999999999998888888999999999999999999999999999999999986 5667899999999


Q ss_pred             HHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCCHH
Q psy15275         86 VLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLEPD  161 (205)
Q Consensus        86 ~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~~~  161 (205)
                      .+++++++++|++|  +|||+|++|+||||++ ++|+||++||+|++ +++++.|+|+|+++++++||+.|++  +||++
T Consensus        81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~-~gp~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e  158 (197)
T cd03760          81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNE-GEPFLGYVDLLGTA-YEDPHVATGFGAYLALPLLREAWEKKPDLTEE  158 (197)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCEEEEEEcCCccE-EECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence            99999999999876  8999999999999975 58999999999998 6999999999999999999999999  99999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      ||++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus       159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~  195 (197)
T cd03760         159 EARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE  195 (197)
T ss_pred             HHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence            9999999999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=5.3e-49  Score=309.73  Aligned_cols=189  Identities=19%  Similarity=0.320  Sum_probs=179.6

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|++.++|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la   81 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA   81 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            79999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-c-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275         89 AMISNMLYER-R-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFET  166 (205)
Q Consensus        89 ~~i~~~~~~~-r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l  166 (205)
                      +++++++|.+ | .|||++++|+||||++ ++|+||++||+|++ .+++++|+|+|+++++++||+.|+++||++||+++
T Consensus        82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~-~~p~Ly~~d~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l  159 (193)
T cd03758          82 NFTRRELAESLRSRTPYQVNLLLAGYDKV-EGPSLYYIDYLGTL-VKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL  159 (193)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEEEEEEcCC-CCcEEEEECCCcce-EECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence            9999988653 3 3799999999999975 58999999999998 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCcEEEEEEeCCcEEEEE
Q psy15275        167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRH  199 (205)
Q Consensus       167 ~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~  199 (205)
                      +.+||+.+.+||+.++++++|++|+++|++..+
T Consensus       160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~  192 (193)
T cd03758         160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE  192 (193)
T ss_pred             HHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence            999999999999999999999999999987643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=1.6e-48  Score=305.09  Aligned_cols=185  Identities=30%  Similarity=0.481  Sum_probs=179.3

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      |+|+|||+++||||||+|++.+.|.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL   80 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            79999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHH
Q psy15275         88 LAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETI  167 (205)
Q Consensus        88 a~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~  167 (205)
                      +++|++++|.+++|||+|++|+||||++  ||+||.+||+|++ .++++.++|+|+++++++||+.|+++||++||++++
T Consensus        81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~--g~~Ly~~d~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~  157 (185)
T TIGR03634        81 ATLLSNILNSNRFFPFIVQLLVGGVDEE--GPHLYSLDPAGGI-IEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLA  157 (185)
T ss_pred             HHHHHHHHHhcCCCCeEEEEEEEEEeCC--CCEEEEECCCCCe-EECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            9999999999889999999999999975  7999999999998 689999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        168 AQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       168 ~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      .+||+.+.+||+.++++++|++|+++|+
T Consensus       158 ~~~l~~~~~r~~~~~~~~~v~ii~~~g~  185 (185)
T TIGR03634       158 VRAIKSAIERDVASGNGIDVAVITKDGV  185 (185)
T ss_pred             HHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence            9999999999999999999999999985

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=1e-47  Score=301.29  Aligned_cols=187  Identities=21%  Similarity=0.305  Sum_probs=178.9

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a   80 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA   80 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence            68999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+| +||++++|+||+|++ ++|+||++||+|++ .+++++++|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~-~gp~ly~~d~~G~~-~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~  157 (188)
T cd03762          81 SLFKNLCYNYK-EMLSAGIIVAGWDEQ-NGGQVYSIPLGGML-IRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVK  157 (188)
T ss_pred             HHHHHHHHhcc-ccceeeEEEEEEcCC-CCcEEEEECCCCCE-EecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            99999998875 689999999999975 58999999999998 5889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +||+.+.+||+.++++++|++|+++|++++
T Consensus       158 ~al~~~~~rd~~~~~~~~i~~i~~~g~~~~  187 (188)
T cd03762         158 NALSLAMSRDGSSGGVIRLVIITKDGVERK  187 (188)
T ss_pred             HHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence            999999999999999999999999999765

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-48  Score=311.77  Aligned_cols=191  Identities=29%  Similarity=0.403  Sum_probs=181.2

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ...|+|+|||+++||||||+|+|.++|.++..++.+|||+|+||++|++||+.+|++.++++++.+++.|++.+++++++
T Consensus        27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v  106 (236)
T COG0638          27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV  106 (236)
T ss_pred             HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            34579999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccC--CcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHH
Q psy15275         85 KVLLAMISNMLYERRF--GPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDD  162 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~--~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~e  162 (205)
                      +.+++++++++|.++.  |||+|++|+||+|+  ++|+||++||+|++ .++++.|+|+|+++++++||++|+++|++||
T Consensus       107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~-~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~ee  183 (236)
T COG0638         107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD--GGPRLYSTDPSGSY-NEYKATAIGSGSQFAYGFLEKEYREDLSLEE  183 (236)
T ss_pred             HHHHHHHHHHHHHhccCcccceEEEEEEEEcC--CCCeEEEECCCCce-eecCEEEEcCCcHHHHHHHHhhccCCCCHHH
Confidence            9999999999999876  99999999999998  48999999999999 5999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCcEEEEEEeC-CcEEEE
Q psy15275        163 LFETIAQALVNACERNAVSGWGAVVYIIEQ-DKVTVR  198 (205)
Q Consensus       163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~~-~g~~~~  198 (205)
                      |++++++||+.+.+||..++++++|+++++ +|.+..
T Consensus       184 ai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~  220 (236)
T COG0638         184 AIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKL  220 (236)
T ss_pred             HHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEc
Confidence            999999999999999998889999999999 555543

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=1.7e-47  Score=300.04  Aligned_cols=186  Identities=27%  Similarity=0.455  Sum_probs=179.4

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|++.++|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA   80 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|+|||+|++|+||||+  ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||++++.
T Consensus        81 ~~i~~~~~~~~~~P~~~~~lvaG~d~--~~~~ly~~D~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~  157 (188)
T cd03764          81 TLLSNILNSSKYFPYIVQLLIGGVDE--EGPHLYSLDPLGSI-IEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAI  157 (188)
T ss_pred             HHHHHHHHhcCCCCcEEEEEEEEEeC--CCCEEEEECCCCCE-EEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            99999999988999999999999997  48999999999999 6899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||+.+.+||+.++++++|++++++|++.
T Consensus       158 ~~l~~~~~rd~~~~~~i~i~iv~~~g~~~  186 (188)
T cd03764         158 RAIKSAIERDSASGDGIDVVVITKDGYKE  186 (188)
T ss_pred             HHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence            99999999999999999999999999654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0179|consensus

Probab=100.00  E-value=8.6e-48  Score=293.46  Aligned_cols=203  Identities=27%  Similarity=0.429  Sum_probs=195.6

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      .|||..+|+|+|||++.|++|+|+|+|.+.|..+.+++.+|||+++|+++++.+|+.+|+..|...++..+..|++++++
T Consensus        22 f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k  101 (235)
T KOG0179|consen   22 FSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNK  101 (235)
T ss_pred             CCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC------
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW------  154 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~------  154 (205)
                      .|++..+|++|+..+|.+|++||++..++||+|++ |++.+|++||.|++ ++..+.|.|+++..++++|++..      
T Consensus       102 ~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDee-GKG~VySyDPvGsy-er~~~~AgGsa~~mI~PfLDnQi~~kn~~  179 (235)
T KOG0179|consen  102 KMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEE-GKGAVYSYDPVGSY-ERVTCRAGGSAASMIQPFLDNQIGHKNQN  179 (235)
T ss_pred             cccHHHHHHHHHHHHhhcccccceeeeeeeccccc-CceeEEeecCCcce-eeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence            99999999999999999999999999999999998 89999999999999 79999999999999999999763      


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        155 -----EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       155 -----~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                           ++.+++|+|+.|+.+++..|.|||..+|++++|+|++|+|++.+.+|+|.|
T Consensus       180 ~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD  235 (235)
T KOG0179|consen  180 LENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD  235 (235)
T ss_pred             cccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence                 246899999999999999999999999999999999999999999999986

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=6.4e-47  Score=307.41  Aligned_cols=191  Identities=18%  Similarity=0.229  Sum_probs=181.3

Q ss_pred             ccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275          4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS   83 (205)
Q Consensus         4 ~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   83 (205)
                      +-.+|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++++++|+.+|++.+.+++|.+++.|+++++++++
T Consensus        35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is  114 (247)
T PTZ00488         35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS  114 (247)
T ss_pred             ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            44579999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHH
Q psy15275         84 PKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDL  163 (205)
Q Consensus        84 ~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea  163 (205)
                      ++.+|++|++++|.+|..|+.+++|+||||++  ||+||++||+|++ .+++++|+|+|+.+++++||+.|+++|+.+||
T Consensus       115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~--gp~Ly~vDp~Gs~-~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa  191 (247)
T PTZ00488        115 VAAASKILANIVWNYKGMGLSMGTMICGWDKK--GPGLFYVDNDGTR-LHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA  191 (247)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCC--CCEEEEEcCCcce-eecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence            99999999999999886677777999999964  7999999999998 68999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        164 FETIAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      ++++++||+.+.+||..++++++|++|+++|++.
T Consensus       192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~  225 (247)
T PTZ00488        192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKK  225 (247)
T ss_pred             HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEE
Confidence            9999999999999999999999999999999653

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=1.1e-46  Score=295.47  Aligned_cols=188  Identities=31%  Similarity=0.516  Sum_probs=180.7

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|++.++|..+..++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA   80 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999987789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|.+||++++|+||+|++ ++|+||.+||+|++ .+++++++|.|+++++++||+.|+++||++||++++.
T Consensus        81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~-~~~~l~~id~~G~~-~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~  158 (189)
T cd01912          81 NLLSNILYSYRGFPYYVSLIVGGVDKG-GGPFLYYVDPLGSL-IEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVK  158 (189)
T ss_pred             HHHHHHHHhcCCCCeEEEEEEEEEcCC-CCeEEEEECCCCCe-EecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence            999999999877899999999999985 58999999999999 6889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +||+.+.++|+.++++++|++|+++|++.+
T Consensus       159 ~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~  188 (189)
T cd01912         159 KAIDSAIERDLSSGGGVDVAVITKDGVEEL  188 (189)
T ss_pred             HHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence            999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=1.1e-46  Score=295.62  Aligned_cols=186  Identities=22%  Similarity=0.252  Sum_probs=178.1

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+|+||||||+|+|.++|.++..++.+|||+|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL   80 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      ++|++.+|.++ .||+|++|+||||++  +|+||.+||+|++ .+++++|+|+|+++++++||++|+++||++||++++.
T Consensus        81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~--g~~ly~~d~~G~~-~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~  156 (189)
T cd03763          81 TMLKQHLFRYQ-GHIGAALVLGGVDYT--GPHLYSIYPHGST-DKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVC  156 (189)
T ss_pred             HHHHHHHHHcC-CccceeEEEEeEcCC--CCEEEEECCCCCE-EecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            99999988764 499999999999974  7999999999999 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +||+.+.+||+.++++++|++|+++|+++.
T Consensus       157 ~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~  186 (189)
T cd03763         157 EAIEAGIFNDLGSGSNVDLCVITKDGVEYL  186 (189)
T ss_pred             HHHHHHHHhcCcCCCceEEEEEcCCcEEEe
Confidence            999999999999999999999999999865

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=6e-46  Score=297.59  Aligned_cols=191  Identities=21%  Similarity=0.275  Sum_probs=176.5

Q ss_pred             cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275          7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV   86 (205)
Q Consensus         7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
                      +|+|+|||+++||||||+|++.++|.++.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~   80 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG   80 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            48999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc---cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHH
Q psy15275         87 LLAMISNMLYER---RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDL  163 (205)
Q Consensus        87 la~~i~~~~~~~---r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea  163 (205)
                      ++++|++++|.+   ++|||+|++|+||||+++++|+||++||+|+....++++|+|+|+++++++||+.|+++||.+||
T Consensus        81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea  160 (219)
T TIGR03690        81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA  160 (219)
T ss_pred             HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence            999999988765   37999999999999963257999999999953257789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCc-------EEEEEEeCCcEEE
Q psy15275        164 FETIAQALVNACERNAVSGWG-------AVVYIIEQDKVTV  197 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~-------i~i~ii~~~g~~~  197 (205)
                      ++++.+||..+.++|..+++.       ++|++|+++|++.
T Consensus       161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~  201 (219)
T TIGR03690       161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR  201 (219)
T ss_pred             HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence            999999999999999877664       3999999999654

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=2.7e-45  Score=295.38  Aligned_cols=187  Identities=18%  Similarity=0.211  Sum_probs=174.0

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+. .++..++.+||++|++|++|+++|..+|++.+.+.++.+++.|++++++++++
T Consensus        24 v~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v  102 (227)
T cd03750          24 VSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPV  102 (227)
T ss_pred             HHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            36899999999999999999999884 56677899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++|+++++.  +|  .|||+|++|+||||++  ||+||++||+|++ .+++++|+|+|+++++++||++|+++|++
T Consensus       103 ~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~--g~~Ly~~d~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  179 (227)
T cd03750         103 SQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG--GPYLYQVDPSGSY-FTWKATAIGKNYSNAKTFLEKRYNEDLEL  179 (227)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC--CCEEEEECCCCCE-EeeeEEEECCCCHHHHHHHHhhccCCCCH
Confidence            9999999998843  34  7999999999999974  8999999999998 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVT  196 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~  196 (205)
                      +||++++++||+.+.++|. ++.++++++|+++ |.+
T Consensus       180 eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~  215 (227)
T cd03750         180 EDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFR  215 (227)
T ss_pred             HHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEE
Confidence            9999999999999999875 7899999999996 555

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=7e-45  Score=292.74  Aligned_cols=185  Identities=14%  Similarity=0.076  Sum_probs=169.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEec----CeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC-cCC
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVG----SHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR-KMS   83 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~   83 (205)
                      |-+|||+++||||||+|+|.+.+.... .+.+|||+|+    +|++|+.||..+|++.+.+++|.+++.|++++++ +++
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~   79 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT   79 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence            458999999999999999998875543 4789999998    8999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHh----cc------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC----cceeecCchhhhhhh
Q psy15275         84 PKVLLAMISNMLYE----RR------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS----DFVVGGPCSDQLYGM  149 (205)
Q Consensus        84 ~~~la~~i~~~~~~----~r------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~----~~~a~G~g~~~~~~~  149 (205)
                      ++.+|+++++++++    ..      .|||+|++|+||||++ .||+||++||+|++ .++    +|.|+|. +.+++++
T Consensus        80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~-~Gp~LY~idpsG~~-~e~~a~~~~~AiG~-~~~a~~~  156 (236)
T cd03765          80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKG-EEPRLFLIYPQGNF-IEATPDTPFLQIGE-TKYGKPI  156 (236)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECC-CCCEEEEECCCCCE-EeecCCCceeeeCC-chhhHHH
Confidence            99999999997544    11      4799999999999975 58999999999998 466    5689995 6999999


Q ss_pred             hhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        150 CETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       150 Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      ||++|+++||++||++++++||+.+++||..++++++|++|+++|.+.
T Consensus       157 Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~  204 (236)
T cd03765         157 LDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV  204 (236)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence            999999999999999999999999999999999999999999999887

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=1.2e-44  Score=291.21  Aligned_cols=193  Identities=20%  Similarity=0.297  Sum_probs=178.2

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++|++||..+|++.+.+.++.++..|++.+++++++
T Consensus        26 v~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  104 (224)
T TIGR03633        26 VKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDV  104 (224)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999999984 45667899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--c--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYE--R--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~--~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++++++++.  +  +.|||+|++|+||+|+  ++|+||.+||.|++ .+++++++|+|+.+++++|++.|+++|++
T Consensus       105 ~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~--~~~~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~~~  181 (224)
T TIGR03633       105 ETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGAL-LEYKATAIGAGRQAVTEFLEKEYREDLSL  181 (224)
T ss_pred             HHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC--CcCEEEEECCCCCe-ecceEEEECCCCHHHHHHHHHhccCCCCH
Confidence            9999999998754  3  2789999999999996  48999999999999 58899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      +||++++++||..+.+ |+.++++++|++|+++|..++.++.
T Consensus       182 eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~  222 (224)
T TIGR03633       182 DEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV  222 (224)
T ss_pred             HHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence            9999999999999888 8889999999999999977766544

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=9.3e-45  Score=289.69  Aligned_cols=184  Identities=11%  Similarity=0.166  Sum_probs=172.4

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.+..+..++.+|||+|+++++|++||..+|++.+.++++.+++.|++++++++++
T Consensus        26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v  105 (213)
T cd03752          26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPV  105 (213)
T ss_pred             HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999999999887766799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.|+.+++.+    +.|||+|++|++|||++ .||+||.+||+|++ .+++++|+|+|+.+++++||++|+++|++
T Consensus       106 ~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~-~g~~ly~~d~~G~~-~~~~~~a~G~gs~~~~~~Le~~y~~~ms~  183 (213)
T cd03752         106 EQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKH-YGFQLYQSDPSGNY-SGWKATAIGNNNQAAQSLLKQDYKDDMTL  183 (213)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCC-CCCEEEEECCCCCe-eeeeEEEECCCcHHHHHHHHHhccCCCCH
Confidence            99999999875432    36899999999999975 58999999999998 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      +||++++.+||..+.+||...+.+++|+++
T Consensus       184 eea~~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         184 EEALALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            999999999999999999888999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=1.4e-44  Score=295.49  Aligned_cols=188  Identities=16%  Similarity=0.207  Sum_probs=176.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|++.+++++++
T Consensus        28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v  107 (253)
T PTZ00246         28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPV  107 (253)
T ss_pred             HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999999999988766788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.++.+++.+    +.|||+|++|+||||++ ++|+||++||+|++ .+++++|+|+|+++++++||++|+++|++
T Consensus       108 ~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~-~gp~Ly~~D~~Gs~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~  185 (253)
T PTZ00246        108 EQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDEN-LGYQLYHTDPSGNY-SGWKATAIGQNNQTAQSILKQEWKEDLTL  185 (253)
T ss_pred             HHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCC-CCcEEEEECCCCCE-ecceEEEECCCcHHHHHHHHHhccCCCCH
Confidence            99999999875542    37899999999999975 58999999999998 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      +||++++++||+.+.++|..++++++|++|+++|
T Consensus       186 eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~  219 (253)
T PTZ00246        186 EQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE  219 (253)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence            9999999999999999999999999999999986

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=4.3e-44  Score=290.87  Aligned_cols=192  Identities=19%  Similarity=0.274  Sum_probs=176.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+. .+...++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus        33 v~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~  111 (241)
T PRK03996         33 VKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGV  111 (241)
T ss_pred             HHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            46899999999999999999999984 45567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++++++++.+    +.|||+|++|+||||++  ||+||.+||+|++ .+++++|+|.|+++++++||++|+++|++
T Consensus       112 ~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~--gp~Ly~id~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~  188 (241)
T PRK03996        112 ETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG--GPRLFETDPSGAY-LEYKATAIGAGRDTVMEFLEKNYKEDLSL  188 (241)
T ss_pred             HHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC--cCEEEEECCCCCe-ecceEEEECCCcHHHHHHHHHhcccCCCH
Confidence            99999999987543    27899999999999974  7999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      +||++++++||+.+.++ ..++++++|++++++|..++.++
T Consensus       189 eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~  228 (241)
T PRK03996        189 EEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS  228 (241)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence            99999999999999876 55789999999999987666554

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=4.1e-44  Score=284.85  Aligned_cols=180  Identities=18%  Similarity=0.333  Sum_probs=166.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.. ++..++.+||++|+++++|++||+.+|++.+.++++.+++.|++++++++++
T Consensus        24 v~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  102 (207)
T cd03755          24 VRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTV  102 (207)
T ss_pred             HHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            468999999999999999999987654 4556688999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++++++++  |.+|  .|||+|++|+||||++ ++|+||++||+|++ .+++++|+|+|+++++++||++|+++|++
T Consensus       103 ~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~-~~p~Ly~iD~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~  180 (207)
T cd03755         103 EYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPD-GTPRLYQTDPSGTY-SAWKANAIGRNSKTVREFLEKNYKEEMTR  180 (207)
T ss_pred             HHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCC-CCeEEEEECCCcCE-EcceEEEECCCCHHHHHHHHhhccCCCCH
Confidence            99999999988  4444  7899999999999986 68999999999998 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      +||++++++||..+.+   .++.++||+++
T Consensus       181 eeai~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         181 DDTIKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             HHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            9999999999999987   56789999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=5.8e-44  Score=279.91  Aligned_cols=183  Identities=28%  Similarity=0.458  Sum_probs=169.3

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeecc-ccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ++|+|+|||+++|||+||+|++.+.|..+...+ .+|||+|+++++++++|..+|++.+.++++.+++.|++.++.++++
T Consensus         2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~   81 (190)
T PF00227_consen    2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP   81 (190)
T ss_dssp             HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred             CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence            589999999999999999999999998876666 6999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH----HHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC-cceeecCchhhhhhhhhhcCCCCCC
Q psy15275         85 KVLLAMISNM----LYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWEPNLE  159 (205)
Q Consensus        85 ~~la~~i~~~----~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~  159 (205)
                      +.+++.++.+    ++..++||+++++|+||||++ ++|+||.+||+|++ .++ ++.|+|+|+++++++||+.|+++|+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~-~~~~l~~vd~~G~~-~~~~~~~aiG~g~~~~~~~l~~~~~~~~~  159 (190)
T PF00227_consen   82 EYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDED-GGPQLYSVDPSGSY-IECKRFAAIGSGSQFAQPILEKLYKPDLS  159 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETT-TEEEEEEEETTSEE-EEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred             hhhhhhhHHHHhhhcccccccCccccceeeeeccc-cccceeeecccccc-ccccccccchhcchhhhHHHHhhccCCCC
Confidence            9666666654    444458999999999999986 57999999999999 588 6999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      ++||++++.+||+.+.++|..++++++|++|
T Consensus       160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  160 LEEAIELALKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence            9999999999999999999999999999986

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=5e-44  Score=285.02  Aligned_cols=182  Identities=15%  Similarity=0.154  Sum_probs=167.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.++ .+...++.+|||+|++|++|+++|..+|++.+.+++|.+++.|++++++++++
T Consensus        27 ~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v  105 (212)
T cd03751          27 VENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPV  105 (212)
T ss_pred             HhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            36899999999999999999999886 44456788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++|+++++.+    .+|||+|++|+||||++  ||+||++||+|++ .++++.|+|+|+.+++++||++|+++||+
T Consensus       106 ~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~--gp~Ly~~D~~Gs~-~~~~~~a~G~g~~~a~~~Lek~~~~dms~  182 (212)
T cd03751         106 KVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD--GPQLYMIEPSGVS-YGYFGCAIGKGKQAAKTELEKLKFSELTC  182 (212)
T ss_pred             HHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC--cCEEEEECCCCCE-EeeEEEEECCCCHHHHHHHHHhccCCCCH
Confidence            99999999976553    27899999999999964  7999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      +||+++++++|..+++.+.....+++|.++
T Consensus       183 eeai~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         183 REAVKEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence            999999999999999876667788998874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=1.1e-43  Score=282.80  Aligned_cols=182  Identities=19%  Similarity=0.309  Sum_probs=170.2

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+||++++||||||+|++.+.+ ++..++.+|||+|+++++++++|..+|++.+.+.++.+++.|++++++++++
T Consensus        24 ~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~  102 (209)
T cd01911          24 VKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPV  102 (209)
T ss_pred             HHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            468999999999999999999999876 4456899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--c--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYE--R--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~--~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+|++++++++.  +  +.|||+|++||||||++ ++|+||.+||.|++ .+++++++|+|+.+++++||+.|+++|++
T Consensus       103 ~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~-~~~~Ly~iD~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~ms~  180 (209)
T cd01911         103 EVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEE-GGPQLYQTDPSGTY-FGYKATAIGKGSQEAKTFLEKRYKKDLTL  180 (209)
T ss_pred             HHHHHHHHHHHHHHhcccCccChhheEEEEEEcCC-CCcEEEEECCCCCe-eeeeEEEeCCCcHHHHHHHHHhcccCCCH
Confidence            9999999998743  3  26899999999999986 68999999999998 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      +||++++.+||+.+.++|. ++.+++|+++
T Consensus       181 ~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         181 EEAIKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             HHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            9999999999999999999 9999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=2.1e-43  Score=274.95  Aligned_cols=180  Identities=29%  Similarity=0.442  Sum_probs=172.2

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|++.+.+.....++.+|||+|+++++|+++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA   80 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999887789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC--CcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275         89 AMISNMLYERRF--GPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFET  166 (205)
Q Consensus        89 ~~i~~~~~~~r~--~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l  166 (205)
                      ++|++++|.++.  |||++++|+||+|++ ++|+||.+||+|++ .+++++|+|+|+++++++||+.|+++||.+||+++
T Consensus        81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~-~~~~Ly~id~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l  158 (182)
T cd01906          81 KLLANLLYEYTQSLRPLGVSLLVAGVDEE-GGPQLYSVDPSGSY-IEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL  158 (182)
T ss_pred             HHHHHHHHHhCCCccChheEEEEEEEeCC-CCcEEEEECCCCCE-eeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence            999999998874  999999999999985 58999999999999 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCcEEEEEE
Q psy15275        167 IAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       167 ~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      +.+||+.+.++|..++.+++|++|
T Consensus       159 ~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         159 ALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHHcccCCCCCCEEEEEC
Confidence            999999999999989999999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=1.9e-43  Score=281.80  Aligned_cols=182  Identities=18%  Similarity=0.282  Sum_probs=169.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|++++++++++
T Consensus        25 v~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~  103 (211)
T cd03756          25 VKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV  103 (211)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999999874 45567899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.++++++.+    +.|||++++|+||||+.  +|+||.+||+|++ .+++++++|+|+++++++||+.|+++|++
T Consensus       104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~--~~~ly~vd~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~m~~  180 (211)
T cd03756         104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG--GPRLFETDPSGAY-NEYKATAIGSGRQAVTEFLEKEYKEDMSL  180 (211)
T ss_pred             HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC--CCEEEEECCCCCe-eeeEEEEECCCCHHHHHHHHhhccCCCCH
Confidence            99999999987543    37899999999999974  8999999999998 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIE  191 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~  191 (205)
                      +||++++.+||..+.+++. ++.+++|++|+
T Consensus       181 ~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         181 EEAIELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             HHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            9999999999999988776 88999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=9e-44  Score=284.27  Aligned_cols=183  Identities=17%  Similarity=0.276  Sum_probs=167.7

Q ss_pred             ccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275          4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS   83 (205)
Q Consensus         4 ~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   83 (205)
                      .+++|+|+|||+++||||||+|++.+.+.+ ..++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus        25 ~~~~g~t~igi~~~d~Vvlaad~r~~~~~i-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~  103 (215)
T cd03754          25 VKNAGLTSVAVRGKDCAVVVTQKKVPDKLI-DPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMP  103 (215)
T ss_pred             HhcCCccEEEEEeCCEEEEEEecccccccc-CCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            345789999999999999999999887643 4458899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--HHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCC--
Q psy15275         84 PKVLLAMISNM--LYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPN--  157 (205)
Q Consensus        84 ~~~la~~i~~~--~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--  157 (205)
                      ++.+|++++++  +|.++  .|||++++|+||||++ ++|+||++||+|++ .++++.|+|+|+++++++||++|+++  
T Consensus       104 v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~-~gp~Ly~~Dp~Gs~-~~~~~~a~G~gs~~~~~~Le~~~~~~~~  181 (215)
T cd03754         104 VDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEE-LGPQLYKCDPAGYF-AGYKATAAGVKEQEATNFLEKKLKKKPD  181 (215)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCC-CCeEEEEEcCCccE-EeEEEEEECCCcHHHHHHHHHHhccccc
Confidence            99999999996  45554  6899999999999975 58999999999999 69999999999999999999999985  


Q ss_pred             C--CHHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        158 L--EPDDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       158 ~--~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      |  +++||++++++||..+.+||.. +++++|+++
T Consensus       182 ~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~  215 (215)
T cd03754         182 LIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV  215 (215)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence            7  9999999999999999999975 889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=2e-43  Score=281.58  Aligned_cols=181  Identities=17%  Similarity=0.196  Sum_probs=167.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.+.   .++.+|||+|+++++|++||+.+|++.+.++++.+++.|++++++++++
T Consensus        24 v~~G~t~IgIk~~dgVvlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v  100 (211)
T cd03749          24 VKQGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPV  100 (211)
T ss_pred             HhcCCCEEEEEeCCEEEEEEeccCcccc---CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            3689999999999999999999987653   4577999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--c--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC--CCC
Q psy15275         85 KVLLAMISNMLYE--R--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE--PNL  158 (205)
Q Consensus        85 ~~la~~i~~~~~~--~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~  158 (205)
                      +.+++.++.+++.  +  +.|||+|++|+||||++  ||+||++||+|++ .+++++|+|+|+++++++||++|+  ++|
T Consensus       101 ~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~--gp~Ly~~Dp~G~~-~~~~~~a~G~g~~~a~~~Le~~~~~~~~m  177 (211)
T cd03749         101 SRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES--GPHLFQTCPSGNY-FEYKATSIGARSQSARTYLERHFEEFEDC  177 (211)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC--CCeEEEECCCcCE-eeeeEEEECCCcHHHHHHHHHhhccccCC
Confidence            9999999997764  2  37899999999999974  7999999999998 689999999999999999999998  699


Q ss_pred             CHHHHHHHHHHHHHHHHhhcc-ccCCcEEEEEEe
Q psy15275        159 EPDDLFETIAQALVNACERNA-VSGWGAVVYIIE  191 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~-~~~~~i~i~ii~  191 (205)
                      +++||+++++++|+.++++|. .+++++||++|+
T Consensus       178 s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         178 SLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            999999999999999999887 889999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=1.2e-42  Score=277.55  Aligned_cols=181  Identities=16%  Similarity=0.229  Sum_probs=166.8

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.+. +..++.+||++|+++++|+++|+.+|++.+.+.++.+++.|++++++++++
T Consensus        24 ~~~G~t~igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  102 (213)
T cd03753          24 IKLGSTAIGIKTKEGVVLAVEKRITSPL-MEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTV  102 (213)
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccCCcC-cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            3689999999999999999999998654 556788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc---------cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275         85 KVLLAMISNMLYER---------RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE  155 (205)
Q Consensus        85 ~~la~~i~~~~~~~---------r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  155 (205)
                      +.+++.+++++|..         +.|||+|++|+||||++  ||+||.+||+|++ .+++++|+|+|+++++++|+++|+
T Consensus       103 ~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~--gp~Ly~vd~~G~~-~~~~~~a~G~~~~~~~~~L~~~~~  179 (213)
T cd03753         103 ESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN--GPQLFHTDPSGTF-TRCDAKAIGSGSEGAQSSLQEKYH  179 (213)
T ss_pred             HHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC--CCEEEEECCCCCe-ecccEEEECCCcHHHHHHHHhhcc
Confidence            99999999988652         14899999999999974  8999999999998 689999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      ++|+++||++++++||+.+.+++ .++.+++|++|
T Consensus       180 ~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         180 KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            99999999999999999988765 66788999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0180|consensus

Probab=100.00  E-value=2.4e-42  Score=256.30  Aligned_cols=204  Identities=63%  Similarity=1.157  Sum_probs=198.1

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      |++++.+|+++||+++|++|.||+|.|........+.+++|||+++|++++|.+|+..|.|.|.++++...+.|++++++
T Consensus         1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R   80 (204)
T KOG0180|consen    1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER   80 (204)
T ss_pred             CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence            89999999999999999999999999988877777899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      .+.|+.+++++|.++|++|+-||.+..++||.|++ ++|+|...|..|....+.+|++.|.++...++.+|..|+|+|+.
T Consensus        81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~-~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmep  159 (204)
T KOG0180|consen   81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDD-NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEP  159 (204)
T ss_pred             ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCC-CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCH
Confidence            99999999999999999999999999999999996 79999999999998778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                      |+..+.+..+|..+.+||+.+|+...+.+|+||++..+.++.|+|
T Consensus       160 d~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD  204 (204)
T KOG0180|consen  160 DELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD  204 (204)
T ss_pred             HHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence            999999999999999999999999999999999999999999987

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=6.1e-41  Score=269.43  Aligned_cols=180  Identities=14%  Similarity=0.170  Sum_probs=161.4

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCCH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMSP   84 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   84 (205)
                      ++|+|+|||+++||||||+|++.        .+.+|||+|+||++|+++|+.+|++.+++..+.+++.|++.++ .++++
T Consensus        25 ~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v   96 (228)
T TIGR03691        25 ARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTG   96 (228)
T ss_pred             HcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Confidence            57999999999999999999962        4678999999999999999999999999999999999999987 68999


Q ss_pred             HHHHHHHHHHHHhc---cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER---RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~---r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+|+.+++.++..   +.|||+|++|+||||++..||+||.+||+|++ .+++ +.|+|+|++.++++||++|+++||+
T Consensus        97 ~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~-~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~  175 (228)
T TIGR03691        97 RGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI-VDERGFVVMGGTTEPIATALKESYRDGLSL  175 (228)
T ss_pred             HHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc-eeccceEEECCChHHHHHHHHHhcCCCCCH
Confidence            99999888765432   46899999999999852258999999999998 4655 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh--hccccCCcEEEEEEeCCc
Q psy15275        161 DDLFETIAQALVNACE--RNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~--~d~~~~~~i~i~ii~~~g  194 (205)
                      +||++++++||+.+.+  ++..+..+++|.++++++
T Consensus       176 eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~  211 (228)
T TIGR03691       176 ADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR  211 (228)
T ss_pred             HHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence            9999999999999964  667888999999999865

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>KOG0185|consensus

Probab=100.00  E-value=4.5e-41  Score=260.59  Aligned_cols=198  Identities=26%  Similarity=0.385  Sum_probs=186.1

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhh-hhhhcCCcCCH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNL-YELKENRKMSP   84 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~~   84 (205)
                      -+||++||+||+|||+||+|+..|+|++.+..+.+|+++|+||+++|+||..+|+|.+.+.+.....+ ..+..|+.+.|
T Consensus        39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P  118 (256)
T KOG0185|consen   39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP  118 (256)
T ss_pred             eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence            48999999999999999999999999999999999999999999999999999999999999987544 44778899999


Q ss_pred             HHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC---CCCC
Q psy15275         85 KVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE---PNLE  159 (205)
Q Consensus        85 ~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---~~~~  159 (205)
                      +.++++|.+++|.+|  ++|++..+++||+|.+ +.|+|..+|..|.. ++.+..|+|.|.+.+.++|++.|.   ++++
T Consensus       119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~-g~~~lg~V~~~G~~-Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s  196 (256)
T KOG0185|consen  119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNT-GEPFLGYVDLLGVA-YESPVVATGFGAHLALPLLRDEWEKKGEDLS  196 (256)
T ss_pred             HHHHHHHHHHHHHhhhccCchhhheeEeeecCC-CCeeEEEEeecccc-ccCchhhhhhHHHhhhHHHHHhhhccchhhH
Confidence            999999999999987  9999999999999985 78999999999998 588999999999999999999997   6789


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD  205 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~  205 (205)
                      .+||..++.+||+.+..||+.+..++++++|+++|++++   .++++||
T Consensus       197 ~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~  245 (256)
T KOG0185|consen  197 REEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWD  245 (256)
T ss_pred             HHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecch
Confidence            999999999999999999999999999999999999988   5778886

>KOG0176|consensus

Probab=100.00  E-value=6.9e-41  Score=253.64  Aligned_cols=185  Identities=16%  Similarity=0.207  Sum_probs=171.1

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      +.|+|.|||+.++||||++++|.++..+ .+....||++|++||+|++||+.+|++.++++.|.+++.|.+.|+++++++
T Consensus        32 kLGsTaIGv~TkEgVvL~vEKritSpLm-~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VE  110 (241)
T KOG0176|consen   32 KLGSTAIGVKTKEGVVLAVEKRITSPLM-EPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVE  110 (241)
T ss_pred             hcCCceeeeeccceEEEEEeccccCccc-CchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHH
Confidence            4799999999999999999999999765 578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc-------c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC
Q psy15275         86 VLLAMISNMLYER-------R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP  156 (205)
Q Consensus        86 ~la~~i~~~~~~~-------r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~  156 (205)
                      .+.+.+|++....       +  .|||||++|+||+|.+  ||+||+.||+|++ ..+++-|+|+|+.-+.+.|++.|++
T Consensus       111 s~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~--gpqL~h~dPSGtf-~~~~AKAIGSgsEga~~~L~~e~~~  187 (241)
T KOG0176|consen  111 SLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET--GPQLYHLDPSGTF-IRYKAKAIGSGSEGAESSLQEEYHK  187 (241)
T ss_pred             HHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC--CceEEEeCCCCce-EEecceeccccchHHHHHHHHHHhh
Confidence            9999999975321       1  5899999999999974  8999999999999 6999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      +++++||+.+++..|+..++... +..|+++.+++++|-
T Consensus       188 ~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~  225 (241)
T KOG0176|consen  188 DLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGE  225 (241)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCc
Confidence            99999999999999999998655 457999999999853

>KOG0174|consensus

Probab=100.00  E-value=1.4e-40  Score=251.28  Aligned_cols=195  Identities=23%  Similarity=0.366  Sum_probs=185.1

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      -..|||++|++|++||||++|+|.+.|..+.++-.+|+.+|.|+|+||-||..+|.|.+.+.++-++..|..++++++++
T Consensus        16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v   95 (224)
T KOG0174|consen   16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV   95 (224)
T ss_pred             cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      ...|+.++++.|++|.. +.+++|+||||+. .|.++|.|---|.. .+.+++.-|+||.|++++++.+|+|+|++||++
T Consensus        96 ~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~-~gGqVY~iplGG~l-~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~  172 (224)
T KOG0174|consen   96 HTAASLFREICYNYREM-LSAGLIVAGWDEK-EGGQVYSIPLGGSL-TRQPFAIGGSGSTFIYGFCDANWRPNMTLEECV  172 (224)
T ss_pred             HHHHHHHHHHHHhCHHh-hhcceEEeecccc-cCceEEEeecCceE-eecceeeccCCceeeeeeehhhcCCCCCHHHHH
Confidence            99999999999998743 7899999999997 68999999777776 688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      .++.+|+..+++||-.+|+.+.+.+|+++|++++.++.
T Consensus       173 ~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~  210 (224)
T KOG0174|consen  173 RFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPG  210 (224)
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecC
Confidence            99999999999999999999999999999999998765

>KOG0177|consensus

Probab=100.00  E-value=5.3e-40  Score=247.30  Aligned_cols=189  Identities=21%  Similarity=0.345  Sum_probs=180.9

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      +.+++||++.|+|++|+|+..+++.++..++.+|++++++++.|+.+|..+|+.++.++++..++.|++++|.+++|+.+
T Consensus         1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a   80 (200)
T KOG0177|consen    1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA   80 (200)
T ss_pred             CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-c-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHH
Q psy15275         88 LAMISNMLYER-R-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFE  165 (205)
Q Consensus        88 a~~i~~~~~~~-r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~  165 (205)
                      |+++++.+... | .+||.|++|+||+|++ .+|.||++|..|+. .+.+|.+.|.|+.|+.++|+++|+|+||.+||+.
T Consensus        81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~-~gp~L~~iDyla~~-~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~  158 (200)
T KOG0177|consen   81 AHFTRRELAESLRSRTPYQVNILVAGYDPE-EGPELYYIDYLATL-VSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD  158 (200)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeccCCC-CCCceeeehhhhhc-ccCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence            99999988764 5 7899999999999997 67999999999998 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        166 TIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       166 l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +..+|+.++.+|-.....++.+.+|+|||++..
T Consensus       159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~  191 (200)
T KOG0177|consen  159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKL  191 (200)
T ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEcCCCceec
Confidence            999999999999999999999999999998865

>KOG0178|consensus

Probab=100.00  E-value=8.4e-39  Score=244.44  Aligned_cols=190  Identities=12%  Similarity=0.154  Sum_probs=177.3

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      .+.+|+|||-++||||||++++.++..+-.....+||++|+|+|+|+++|+++|+..|++.+|..+|.|.+.+|+++|++
T Consensus        29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e  108 (249)
T KOG0178|consen   29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE  108 (249)
T ss_pred             hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence            46789999999999999999999988877778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC-CH
Q psy15275         86 VLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL-EP  160 (205)
Q Consensus        86 ~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~-~~  160 (205)
                      +|++.+|+..+.+.    .||||||+|.+|||.. .|.+||+-||+|++ ..|++.++|.++..+++.|++.|+++. ++
T Consensus       109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~-~gyqLy~SdPSGny-~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~  186 (249)
T KOG0178|consen  109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDR-YGYQLYQSDPSGNY-GGWKATCIGANSGAAQSMLKQDYKDDENDL  186 (249)
T ss_pred             HHHHHHHHHHHHHhhccCcCCCceeeeeeceecC-cceEEEecCCCCCc-cccceeeeccchHHHHHHHHhhhccccccH
Confidence            99999999765432    7999999999999986 78999999999999 699999999999999999999999875 59


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||+.+|++.|....+.+..+.+.+||+.+++++.+.
T Consensus       187 ~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~  223 (249)
T KOG0178|consen  187 EEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT  223 (249)
T ss_pred             HHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence            9999999999999999998999999999999987665

>KOG0173|consensus

Probab=100.00  E-value=1.7e-38  Score=248.54  Aligned_cols=190  Identities=22%  Similarity=0.279  Sum_probs=179.6

Q ss_pred             ccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275          4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS   83 (205)
Q Consensus         4 ~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   83 (205)
                      .+..|||++|+.++||||+++|+|.+.|..+...+..||+.+.++|+||.+|..+|...+-+.+.++++.|++..++++.
T Consensus        33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r  112 (271)
T KOG0173|consen   33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR  112 (271)
T ss_pred             ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHH
Q psy15275         84 PKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDL  163 (205)
Q Consensus        84 ~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea  163 (205)
                      +-...+++.+.++.+.. -.++.+|+||+|+.  |||||++-|.|+. ..-+|.+.|+|+..+++.||.+|+|||++|||
T Consensus       113 Vv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~T--GpHLy~i~phGSt-d~~Pf~alGSGslaAmsvlEsr~k~dlt~eea  188 (271)
T KOG0173|consen  113 VVTALRMLKQHLFRYQG-HIGAALILGGVDPT--GPHLYSIHPHGST-DKLPFTALGSGSLAAMSVLESRWKPDLTKEEA  188 (271)
T ss_pred             eeeHHHHHHHHHHHhcC-cccceeEEccccCC--CCceEEEcCCCCc-CccceeeeccchHHHHHHHHHhcCcccCHHHH
Confidence            99999999998887642 36899999999995  8999999999998 58899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        164 FETIAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      .+|+.+|+...+.+|..||+|+++|||++.+++.
T Consensus       189 ~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~  222 (271)
T KOG0173|consen  189 IKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY  222 (271)
T ss_pred             HHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence            9999999999999999999999999999888766

>KOG0175|consensus

Probab=100.00  E-value=5.7e-37  Score=240.57  Aligned_cols=191  Identities=21%  Similarity=0.271  Sum_probs=183.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      -.+|||++|++++.|||+|+|+|.|.|..+.+...+||..||++++-..+|-.+|++..-+.+..+|+.|++++++.+++
T Consensus        68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV  147 (285)
T KOG0175|consen   68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV  147 (285)
T ss_pred             ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      ...+++|++++|++|...+.+..+++|||+.  ||.||++|..|+- ...+-+++|+|+.+|+++|+..|++||+.+||.
T Consensus       148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~--GP~lyYVDseG~R-l~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~  224 (285)
T KOG0175|consen  148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKK--GPGLYYVDSEGTR-LSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAY  224 (285)
T ss_pred             HHHHHHHHHHHhhccCcchhheeeEeeccCC--CCceEEEcCCCCE-ecCceEeecCCCceeEEeeccCCCCCCCHHHHH
Confidence            9999999999999997678899999999985  8999999999998 588999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +|+++++..+..||..+|+-+.++.|+.+|....
T Consensus       225 ~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v  258 (285)
T KOG0175|consen  225 DLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV  258 (285)
T ss_pred             HHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence            9999999999999999999999999999997754

>KOG0183|consensus

Probab=100.00  E-value=3e-36  Score=231.01  Aligned_cols=184  Identities=17%  Similarity=0.273  Sum_probs=168.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+||++++|+|+|+.+++... .+...+...||..+++|++|+++|+.+|++.|+++.|.+|+.|++..+.|+++
T Consensus        27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv  105 (249)
T KOG0183|consen   27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV  105 (249)
T ss_pred             HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence            46899999999999999999998665 44567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCC--C
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPN--L  158 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~  158 (205)
                      +.+.++|+.+.+.+.    .||||+++|++|||++ +.|+||++||+|.| .+|.+.|+|.+++.+..+||++|.++  .
T Consensus       106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~-g~p~lyqtePsG~f-~ewka~aiGr~sk~VrEflEK~y~e~~~~  183 (249)
T KOG0183|consen  106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPD-GTPRLYQTEPSGIF-SEWKANAIGRSSKTVREFLEKNYKEEAIA  183 (249)
T ss_pred             HHHHHHHHHhhhhhhccCCcccccceEEEEeeCCC-CCeeeEeeCCCcch-hhhhccccccccHHHHHHHHHhccccccc
Confidence            999999999765432    7899999999999998 68999999999999 69999999999999999999999866  7


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        159 EPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      +..++++|++++|.+....   .+.+++++++++++
T Consensus       184 ~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~  216 (249)
T KOG0183|consen  184 TEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRK  216 (249)
T ss_pred             ccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCC
Confidence            8899999999999999875   45799999999887

>KOG0181|consensus

Probab=100.00  E-value=5.5e-36  Score=226.49  Aligned_cols=187  Identities=17%  Similarity=0.199  Sum_probs=172.1

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|.+.|||+-.||||||++++..+.. ......+|+++|.++|+|.+||..+|++.+++..|..++.|...+++++++
T Consensus        29 v~~G~~SvGi~A~nGvVlatekk~~s~L-~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt  107 (233)
T KOG0181|consen   29 VVNGQTSVGIKAANGVVLATEKKDVSPL-VDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT  107 (233)
T ss_pred             HhCCCCceeeeecCceEEEeccCCCCcc-chhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence            3589999999999999999999776643 456888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      ..+...++.+++++.    .||||+++++||||..  +|.||++||+|++ +.|++.|.|.+...++++||++|.+++.+
T Consensus       108 ~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~--~p~LyQvdPSGsy-f~wkatA~Gkn~v~aktFlEkR~~edlel  184 (233)
T KOG0181|consen  108 TQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG--GPLLYQVDPSGSY-FAWKATAMGKNYVNAKTFLEKRYNEDLEL  184 (233)
T ss_pred             HHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC--ceeEEEECCccce-eehhhhhhccCcchHHHHHHHHhcccccc
Confidence            999999999887653    7999999999999984  8999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT  196 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~  196 (205)
                      ++++..++..|++.++... +.++++|+++..++++
T Consensus       185 dd~ihtailtlkE~fege~-~~~nieigv~~~~~F~  219 (233)
T KOG0181|consen  185 DDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFR  219 (233)
T ss_pred             chHHHHHHHHHHHHhcccc-ccCceEEEEecCCcee
Confidence            9999999999999998765 4689999999977665

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=100.00  E-value=5.9e-35  Score=224.69  Aligned_cols=167  Identities=18%  Similarity=0.203  Sum_probs=146.5

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV   86 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
                      |+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.||..+|+|.+.+.++.+++.|+.  +.   .+.
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~   75 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA   75 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence            79999999999999999999999999999999999999 9999999999999999999999999998872  21   466


Q ss_pred             HHHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccC-CcceeecCchhhhhhhhhhcCC-CCCCHHHH
Q psy15275         87 LLAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQP-SDFVVGGPCSDQLYGMCETLWE-PNLEPDDL  163 (205)
Q Consensus        87 la~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~-~~~~~~ea  163 (205)
                      +++.+..+ ...+ .+|+.+++|++  |    .|+||.+||.|+..++ .++.++|+|+.+++++|+++|+ |+|   ||
T Consensus        76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d----~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA  145 (172)
T PRK05456         76 AVELAKDW-RTDRYLRRLEAMLIVA--D----KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SA  145 (172)
T ss_pred             HHHHHHHH-HhccCCCccEEEEEEE--c----CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence            66655443 2233 35788999994  4    3799999999998423 2799999999999999999999 999   99


Q ss_pred             HHHHHHHHHHHHhhccccCCcEEEEE
Q psy15275        164 FETIAQALVNACERNAVSGWGAVVYI  189 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~i~i~i  189 (205)
                      ++++++|++.+.+||..+++++++-.
T Consensus       146 ~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        146 EEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             HHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence            99999999999999999999998864

>KOG0184|consensus

Probab=100.00  E-value=3.3e-35  Score=226.36  Aligned_cols=184  Identities=14%  Similarity=0.162  Sum_probs=164.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++++|+||||||||||+++++.+++..+. ...++|||.|++||+|+++|+.+|.+.+.+++|.++..|+-+++.++|.
T Consensus        31 ven~~T~IGIk~kdGVVl~vEKli~SkLy~-p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~  109 (254)
T KOG0184|consen   31 VENSGTCIGIKCKDGVVLAVEKLITSKLYE-PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPG  109 (254)
T ss_pred             HhcCCcEEEEecCCeEEEEEeeeecccccc-cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCch
Confidence            468999999999999999999999987764 6888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      ..+++.+...++-..    .||||++.++++||.  +||+||.++|+|.+ +.++.+|+|.|.+.+++.||+.--.+|+.
T Consensus       110 ~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~--~g~~LymiepSG~~-~~Y~~aaiGKgrq~aKtElEKL~~~~mt~  186 (254)
T KOG0184|consen  110 KHLADRVADYVHAFTLYSSVRPFGASTILGSYDD--EGPQLYMIEPSGSS-YGYKGAAIGKGRQAAKTELEKLKIDEMTC  186 (254)
T ss_pred             HHHHHHHHhhhheeehhhccccccceEEEEEEeC--CCceEEEEcCCCCc-cceeeeeccchhHHHHHHHHhcccccccH
Confidence            999999999876543    689999999999996  48999999999998 69999999999999999999998789999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeC
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQ  192 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~  192 (205)
                      +|+++.+.+.|..+.+......-.+|+.++..
T Consensus       187 ~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~  218 (254)
T KOG0184|consen  187 KELVKEAAKIIYKVHDENKDKEFEIEMGWVGE  218 (254)
T ss_pred             HHHHHHHHheeEeecccccCcceEEEEEEEEe
Confidence            99999999999887654332233466777764

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=100.00  E-value=4.3e-34  Score=218.51  Aligned_cols=165  Identities=17%  Similarity=0.166  Sum_probs=142.4

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecC-eEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGS-HMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+.+|..+|++.|.++++.+++.|+.+.++     .+
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a   75 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA   75 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence            699999999999999999999999999999999999999 999999999999999999999999999877663     44


Q ss_pred             HHHHHHHHHhccCCcce-eeeEEEEecCCCCCcEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcCCCC-CCHHHH
Q psy15275         88 LAMISNMLYERRFGPYF-VEPMVVGLDPETAEPIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLWEPN-LEPDDL  163 (205)
Q Consensus        88 a~~i~~~~~~~r~~P~~-v~~iv~G~d~~~~~p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~~~~ea  163 (205)
                      ++.+..+ ...+.+|+. +.++++  |    .++||.+||.|+.. ++  ++.++|+|+.+++++||.+|+++ |+   +
T Consensus        76 a~l~~~l-~~~~~~~~l~a~~iv~--~----~~~ly~id~~G~~i-e~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~  144 (171)
T cd01913          76 VELAKDW-RTDRYLRRLEAMLIVA--D----KEHTLLISGNGDVI-EPDDGIAAIGSGGNYALAAARALLDHTDLS---A  144 (171)
T ss_pred             HHHHHHH-HhccCcCceEEEEEEe--C----CCcEEEECCCCCEe-ccCCCeEEEeCCHHHHHHHHHHhhccCCCC---H
Confidence            5544443 233444665 666654  3    35899999999984 65  59999999999999999999995 99   6


Q ss_pred             HHHHHHHHHHHHhhccccCCcEEEEE
Q psy15275        164 FETIAQALVNACERNAVSGWGAVVYI  189 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~i~i~i  189 (205)
                      .+++.+|++.+.+||+.+++++++..
T Consensus       145 ~~la~~Av~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         145 EEIARKALKIAADICIYTNHNITVEE  170 (171)
T ss_pred             HHHHHHHHHHHHhhCcccCCCEEEEe
Confidence            69999999999999999999998764

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=100.00  E-value=4e-33  Score=213.20  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=141.7

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.+|..+|+|.|.++++.+++.|+...     .+.+
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~   75 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA   75 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence            6999999999999999999999999999999999999 599999999999999999999999999887632     3666


Q ss_pred             HHHHHHHHHhccCCc-ceeeeEEEEecCCCCCcEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcC-CCCCCHHHH
Q psy15275         88 LAMISNMLYERRFGP-YFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLW-EPNLEPDDL  163 (205)
Q Consensus        88 a~~i~~~~~~~r~~P-~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~~~~ea  163 (205)
                      ++.++++ ..++.+| +.+.++++  |    .++||.+||.|+.. ++  ++.++|+|+.+++++||.+| +++|+   |
T Consensus        76 a~l~~~~-~~~~~~~~l~a~~iv~--~----~~~ly~i~~~G~~i-e~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a  144 (171)
T TIGR03692        76 VELAKDW-RTDRYLRRLEAMLIVA--D----KETSLLISGTGDVI-EPEDGIAAIGSGGNYALAAARALLRNTDLS---A  144 (171)
T ss_pred             HHHHHHH-hhcccccccEEEEEEE--c----CCCEEEEcCCCcEe-ccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---H
Confidence            7776663 2223223 34666665  3    25899999999985 53  69999999999999999999 47777   9


Q ss_pred             HHHHHHHHHHHHhhccccCCcEEEEE
Q psy15275        164 FETIAQALVNACERNAVSGWGAVVYI  189 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~i~i~i  189 (205)
                      ++++.++++.+.+||+.+++++++..
T Consensus       145 ~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       145 EEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             HHHHHHHHHHHHhhCccCCCCEEEEe
Confidence            99999999999999999999998864

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0182|consensus

Probab=100.00  E-value=8.2e-33  Score=211.75  Aligned_cols=193  Identities=18%  Similarity=0.260  Sum_probs=176.6

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      +.|-|.||++++|++|+++.++++..+ +.++....+|+|.++|+|+++|..+|++..++++|.++.++++.+|.++|++
T Consensus        34 ~~gltsVavrgkDcavvvsqKkvpDKL-ld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~D  112 (246)
T KOG0182|consen   34 QAGLTSVAVRGKDCAVVVTQKKVPDKL-LDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCD  112 (246)
T ss_pred             cCCCceEEEcCCceEEEEecccCcccc-cccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence            458999999999999999999998755 5678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCC--CC
Q psy15275         86 VLLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPN--LE  159 (205)
Q Consensus        86 ~la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~~  159 (205)
                      .|++.++++.  |.++  +||+||.+++.|+|++ .||.+|.+||.|-+ ..+++.+.|.....+.++||++|+++  ++
T Consensus       113 iL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E-~gP~vYk~DpAGyy-~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t  190 (246)
T KOG0182|consen  113 ILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEE-RGPSVYKTDPAGYY-YGFKATAAGVKQQEATSFLEKKYKKDIDLT  190 (246)
T ss_pred             HHHHHHhhHHHHHhhhhhhcccceeEEEEEeccc-cCcceEeecCcccc-ccceeeecccchhhHHHHHHHhhccCccch
Confidence            9999999854  5555  8999999999999998 68999999999998 58899999999999999999999987  67


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      .+|++++++.||..++..|..+ ..+||.+++++..+++.|..
T Consensus       191 ~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~f~~Ls~  232 (246)
T KOG0182|consen  191 FEETVETAISALQSSLGIDFKS-SELEVGVVTVDNPEFRILSA  232 (246)
T ss_pred             HHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcceeeccH
Confidence            9999999999999999988865 57999999999988887654

>KOG0863|consensus

Probab=100.00  E-value=2.3e-33  Score=217.20  Aligned_cols=186  Identities=19%  Similarity=0.236  Sum_probs=168.8

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ...|++.||+|.++..||++-++..+..   +..++|||+|++|++++++|+++|++.|.++++.+|..+++.+++++++
T Consensus        29 vkqGsatVGLks~thaVLvAl~r~~seL---ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv  105 (264)
T KOG0863|consen   29 VKQGSATVGLKSRTHAVLVALKRAQSEL---SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV  105 (264)
T ss_pred             HhcccceEeecccceEEEeeeccchhHH---HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence            4589999999999999999988876533   6788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC--CCC
Q psy15275         85 KVLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE--PNL  158 (205)
Q Consensus        85 ~~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~  158 (205)
                      ..+...|++.++..  |  +|||||+++++|+|+.  ||+||+++|+|++ .+++..++|+.++.+.++||++..  +++
T Consensus       106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~--G~hl~e~~Psg~v-~e~~g~sIGsRSQsARTyLEr~~e~f~~~  182 (264)
T KOG0863|consen  106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES--GPHLYEFCPSGNV-FECKGMSIGSRSQSARTYLERNLEEFEDS  182 (264)
T ss_pred             HHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC--CceeEEEcCCccE-EEEeeeecccchhhHHHHHHHHHHHHhcC
Confidence            99999998876643  3  7899999999999985  8999999999999 599999999999999999999874  689


Q ss_pred             CHHHHHHHHHHHHHHHHhhc-cccCCcEEEEEEeCCcEE
Q psy15275        159 EPDDLFETIAQALVNACERN-AVSGWGAVVYIIEQDKVT  196 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d-~~~~~~i~i~ii~~~g~~  196 (205)
                      +.||.+..++.||+.....| ..++.+++|+|+.||...
T Consensus       183 ~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf  221 (264)
T KOG0863|consen  183 SPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPF  221 (264)
T ss_pred             CHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCce
Confidence            99999999999999998744 778899999999998643

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.98  E-value=1.6e-30  Score=197.21  Aligned_cols=161  Identities=27%  Similarity=0.331  Sum_probs=152.6

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+||++++|||+||+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA   80 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            58999999999999999999998876678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC-cceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275         89 AMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWEPNLEPDDLFET  166 (205)
Q Consensus        89 ~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l  166 (205)
                      +.+++.++.++ ++|+++++|+||+|+  ++|+||.+||.|++ .+. .++++|.++..+.++|++.|+++++.+|++++
T Consensus        81 ~~~~~~~~~~~~~~p~~~~~iiag~~~--~~~~l~~id~~g~~-~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (164)
T cd01901          81 KELAKLLQVYTQGRPFGVNLIVAGVDE--GGGNLYYIDPSGPV-IENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL  157 (164)
T ss_pred             HHHHHHHHHhcCCCCcceEEEEEEEcC--CCCEEEEECCCcCE-eecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence            99999998876 589999999999997  48999999999998 577 99999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy15275        167 IAQALV  172 (205)
Q Consensus       167 ~~~~l~  172 (205)
                      +.+||.
T Consensus       158 ~~~~l~  163 (164)
T cd01901         158 ALKALK  163 (164)
T ss_pred             HHHHHh
Confidence            999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.7e-17  Score=122.91  Aligned_cols=172  Identities=19%  Similarity=0.191  Sum_probs=131.7

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecC-eEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGS-HMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++||+++++-++-|+||+|.++|.|+.++..+..|+.+|.. .++.|++|.++|+..|.+.++.+++.|.-+  -.-.+
T Consensus         2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~--L~raa   79 (178)
T COG5405           2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD--LFRAA   79 (178)
T ss_pred             ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc--HHHHH
Confidence            479999999999999999999999999999999888877765 799999999999999999999999887511  11134


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC-cceeecCchhhhhhhhhhcCC-CCCCHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWE-PNLEPDD  162 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~-~~~~~~e  162 (205)
                      .++++-+..--|   .|-+.+-++++  |+    -.+|-+...|-..++. +..++|||..++++..+..++ ++++   
T Consensus        80 velaKdwr~Dk~---lr~LEAmllVa--d~----~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---  147 (178)
T COG5405          80 VELAKDWRTDKY---LRKLEAMLLVA--DK----THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---  147 (178)
T ss_pred             HHHHHhhhhhhH---HHHHhhheeEe--CC----CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---
Confidence            445544443222   23366777887  65    3477777788765444 489999999999988777764 3666   


Q ss_pred             HHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275        163 LFETIAQALVNACERNAVSGWGAVVYIIE  191 (205)
Q Consensus       163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~  191 (205)
                      |.+++.++|+.+.+-+..++.++.|..+.
T Consensus       148 A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         148 AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence            78899999988877777777777666554

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2e-12  Score=99.39  Aligned_cols=188  Identities=13%  Similarity=0.038  Sum_probs=147.1

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEec---C-eEEEEeCCChhHHHHHHHHHHHHhhhhh-hhcCCcC
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVG---S-HMYVGLPGLATDTQTVYQKIRFRQNLYE-LKENRKM   82 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~---~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~   82 (205)
                      +|-+||++-..|.|+++|+|...|.- ....++|+|...   + -++++.+|..+-.|.+++.+.+..+.-. -.-.+-+
T Consensus         1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~   79 (255)
T COG3484           1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP   79 (255)
T ss_pred             CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence            46799999999999999999988753 236677876653   3 3677889999999999999987765111 1112334


Q ss_pred             CHHHHHHHHHHHHH---hc-c------CCcceeeeEEEEecCCCCCcEEEEEcCCCcccc---CCcceeecCchhhhhhh
Q psy15275         83 SPKVLLAMISNMLY---ER-R------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQ---PSDFVVGGPCSDQLYGM  149 (205)
Q Consensus        83 ~~~~la~~i~~~~~---~~-r------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~---~~~~~a~G~g~~~~~~~  149 (205)
                      ++-+.+.++.....   .+ +      .--|.|++|+||.=.. +-|.||.|-|.|++.+   +.+|.-+|... +-+++
T Consensus        80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G-~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPi  157 (255)
T COG3484          80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKG-EPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPI  157 (255)
T ss_pred             hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecC-CCceeEEEccCCCeeecCCCCceeEccccc-cCchh
Confidence            66666666665432   22 1      2346799999999874 5699999999999843   46788899654 57899


Q ss_pred             hhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        150 CETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       150 Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      |++.+.-+++++|+.++++-++...++.+.+.|-++++.++++|-....
T Consensus       158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~  206 (255)
T COG3484         158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVR  206 (255)
T ss_pred             hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeee
Confidence            9999999999999999999999999999999999999999999976654

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.39  E-value=0.019  Score=44.57  Aligned_cols=50  Identities=10%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275        144 DQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD  193 (205)
Q Consensus       144 ~~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~  193 (205)
                      +.+...|+++|++.|+++++..+..++|+.+....+..+..+++...++.
T Consensus       131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence            46778899999999999999999999999998888877888999887764

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.72  E-value=0.05  Score=43.79  Aligned_cols=155  Identities=13%  Similarity=0.096  Sum_probs=92.6

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      ++.+|+..+++|.|+|.|+|.                      +.+-|.-.|...|-+.+      |   .|.=.+-++|
T Consensus         1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEekL------Y---sGeIkteEEL   49 (293)
T COG4079           1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEKL------Y---SGEIKTEEEL   49 (293)
T ss_pred             CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHHh------h---cCccccHHHH
Confidence            467899999999999999873                      13456666666555443      2   3444566677


Q ss_pred             HHHHHHHH-----Hhcc--CCcceeeeEEEEecCCC----CCcEEEEE-------cCCCccc----cCCcceeecCchh-
Q psy15275         88 LAMISNML-----YERR--FGPYFVEPMVVGLDPET----AEPIIGNM-------DLIGCVN----QPSDFVVGGPCSD-  144 (205)
Q Consensus        88 a~~i~~~~-----~~~r--~~P~~v~~iv~G~d~~~----~~p~ly~i-------d~~G~~~----~~~~~~a~G~g~~-  144 (205)
                      +++...+=     ...|  .+-..-++++|-+..-+    ..-.+|-+       +-.|+-.    +......+-.|.. 
T Consensus        50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~  129 (293)
T COG4079          50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF  129 (293)
T ss_pred             HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence            77666531     1111  12222334444333210    11233322       1112110    0011222223333 


Q ss_pred             ---hhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275        145 ---QLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD  193 (205)
Q Consensus       145 ---~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~  193 (205)
                         .+..+|..+|.+.++++++.++..++|..+...-+..+..++++.+++.
T Consensus       130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~  181 (293)
T COG4079         130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN  181 (293)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence               4557889999999999999999999999998777777888999988764

>KOG3361|consensus

Probab=86.28  E-value=0.63  Score=34.08  Aligned_cols=43  Identities=19%  Similarity=0.201  Sum_probs=38.0

Q ss_pred             EEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275        123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFET  166 (205)
Q Consensus       123 ~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l  166 (205)
                      .+|.+|.+ +..+|-..|.||..+-+-+-..|-.++++|||.++
T Consensus        72 kvd~~g~I-~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI  114 (157)
T KOG3361|consen   72 KVDDSGVI-EDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI  114 (157)
T ss_pred             EECCCCcE-EEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence            57889998 68899999999999999999999999999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
1iru_J	205	Crystal Structure Of The Mammalian 20s Proteasome A		3e-78
3unb_I	205	Mouse Constitutive 20s Proteasome In Complex With P		6e-78
1g0u_I	205	A Gated Channel Into The Proteasome Core Particle L		1e-68
1ryp_J	204	Crystal Structure Of The 20s Proteasome From Yeast		1e-68
1j2q_H	202	20s Proteasome In Complex With Calpain-inhibitor I		2e-18
1iru_M	213	Crystal Structure Of The Mammalian 20s Proteasome A		2e-15
3unb_L	213	Mouse Constitutive 20s Proteasome In Complex With P		9e-15
1ya7_H	217	Implications For Interactions Of Proteasome With Pa		1e-13
1pma_B	211	Proteasome From Thermoplasma Acidophilum Length = 2		1e-13
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		1e-13
3c91_H	203	Thermoplasma Acidophilum 20s Proteasome With An Ope		4e-13
1ryp_M	222	Crystal Structure Of The 20s Proteasome From Yeast		3e-09
1g0u_L	241	A Gated Channel Into The Proteasome Core Particle L		4e-09
1iru_L	204	Crystal Structure Of The Mammalian 20s Proteasome A		8e-07
3unf_N	199	Mouse 20s Immunoproteasome In Complex With Pr-957 L		1e-06
1fnt_D	254	Crystal Structure Of The 20s Proteasome From Yeast		3e-06
1g0u_C	243	A Gated Channel Into The Proteasome Core Particle L		3e-06
1ryp_D	241	Crystal Structure Of The 20s Proteasome From Yeast		3e-06
1vsy_D	227	Proteasome Activator Complex Length = 227		3e-06
1ryp_K	198	Crystal Structure Of The 20s Proteasome From Yeast		4e-06
3unb_K	205	Mouse Constitutive 20s Proteasome In Complex With P		5e-06
3unb_N	205	Mouse Constitutive 20s Proteasome In Complex With P		6e-06
3nzj_K	287	Crystal Structure Of Yeast 20s Proteasome In Comple		1e-05
4b4t_5	287	Near-Atomic Resolution Structural Model Of The Yeas		3e-05
1g0u_K	212	A Gated Channel Into The Proteasome Core Particle L		5e-05
3h4p_A	264	Proteasome 20s Core Particle From Methanocaldococcu		8e-05
1ryp_L	212	Crystal Structure Of The 20s Proteasome From Yeast		9e-05
1ryp_H	205	Crystal Structure Of The 20s Proteasome From Yeast		2e-04
1iru_H	205	Crystal Structure Of The Mammalian 20s Proteasome A		2e-04
3unf_K	204	Mouse 20s Immunoproteasome In Complex With Pr-957 L		2e-04
3nzj_N	215	Crystal Structure Of Yeast 20s Proteasome In Comple		3e-04

>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 124/205 (60%), Positives = 168/205 (81%)
Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score =  286 bits (732), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 168/205 (81%)
Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V++IE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205

>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle Length = 205

Iteration: 1
 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 155/199 (77%), Gaps = 1/199 (0%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           NGG +VAMTGK+CVAIACD R G Q   +++ F+KIF  G H+++G+ GLATD  T+ + 
Sbjct: 8   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
            R++ NLY+LKE R + P+    ++S+ LYERRFGPYFV P+V G++ ++ +P I   DL
Sbjct: 67  FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
           IGC+++  DF+V G  SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SGWGAV
Sbjct: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 186
Query: 187 VYIIEQDKVTVRHVKTRMD 205
           VYII++D+V  R++K R D
Sbjct: 187 VYIIKKDEVVKRYLKMRQD 205

>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 204

Iteration: 1
 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 155/199 (77%), Gaps = 1/199 (0%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           NGG +VAMTGK+CVAIACD R G Q   +++ F+KIF  G H+++G+ GLATD  T+ + 
Sbjct: 7   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
            R++ NLY+LKE R + P+    ++S+ LYERRFGPYFV P+V G++ ++ +P I   DL
Sbjct: 66  FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 125
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
           IGC+++  DF+V G  SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SGWGAV
Sbjct: 126 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 185
Query: 187 VYIIEQDKVTVRHVKTRMD 205
           VYII++D+V  R++K R D
Sbjct: 186 VYIIKKDEVVKRYLKMRQD 204

>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 2/185 (1%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + V +  K+ V +A +KR  +     +   +KI+Q+   M +   G   D Q + + I+ 
Sbjct: 2   TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
             NLYE++  RK + + +  + SN+L   R+ PY V+ ++ G+D E     I ++D IG 
Sbjct: 62  EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS--IYSIDPIGG 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
             +  D V  G  S   YG+ E  + P +  D+  E   +A+ +A +R++ SG G  V  
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179
Query: 190 IEQDK 194
           I +D+
Sbjct: 180 ITEDE 184

>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 11/209 (5%)
Query: 6   YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
           +NGG+I+A+ G++   +A D R     +    +  K +++     +G  G   D  T+ +
Sbjct: 7   FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
            I  R  +Y+   N+ M+   + AM+S +LY RRF PY+V  ++ GLD E  +  + + D
Sbjct: 67  IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGAVYSFD 125
Query: 126 LIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQALVNACE 176
            +G   + S F  GG  S  L         +   + +    L  D     +    ++A E
Sbjct: 126 PVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184
Query: 177 RNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           R+  +G    + I+ ++ +    V  R D
Sbjct: 185 RDVYTGDALRICIVTKEGIREETVSLRKD 213

>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 213

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
            S   +NGG+++A+ G++   +A D R     +    +  K +++     +G  G   D 
Sbjct: 2   FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
            T+ + I  R  +Y+   N+ M+   + AM+S +LY RRF PY+V  ++ GLD E  +  
Sbjct: 62  LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGA 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQAL 171
           + + D +G   + S F  GG  S  L         +   + +    L  D     +    
Sbjct: 121 VYSFDPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVF 179
Query: 172 VNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           ++A ER+  +G    + I+ ++ +    V  R D
Sbjct: 180 ISAAERDVYTGDALRICIVTKEGIREETVPLRKD 213

>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + V +T K+ V +A ++R  ++   +  N +K+FQ+ ++  + + GL  D Q + + 
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRY 66
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           ++    LY L+    M  + +  ++SNML + ++ PY V+ +V G+D     P + ++D 
Sbjct: 67  MKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID---TAPHVFSIDA 123
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            G  +    +   G  S  +YG+ E+ +   +  D+  + + +A+  A +R++ SG
Sbjct: 124 AGG-SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 178

>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + V +T K+ V +A ++R  ++   +  N +K+FQ+ ++  + + GL  D Q + + 
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRY 66
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           ++    LY L+    M  + +  ++SNML + ++ PY V+ +V G+D     P + ++D 
Sbjct: 67  MKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID---TAPHVFSIDA 123
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            G  +    +   G  S  +YG+ E+ +   +  D+  + + +A+  A +R++ SG
Sbjct: 124 AGG-SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 178

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           + V +   + V +A DKR  + G  +AD   +K++++  ++ + + G   D Q + + + 
Sbjct: 3   TTVGLICDDAVILATDKRASL-GNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
               LY+++  R + P     ++SN+L+  R  P+  + ++ G D      +  ++D +G
Sbjct: 62  AEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLF-SLDPLG 120
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
            +N+   F   G  S   YG+ E  ++ ++  ++  +    AL +A ER+  SG G  + 
Sbjct: 121 GMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLA 180
Query: 189 IIEQDKVTV 197
           +I +D V +
Sbjct: 181 VITKDGVKI 189

>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + V +T K+ V +A ++R  ++   +  N +K+FQ+ ++  + + GL  D Q + + ++ 
Sbjct: 2   TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
              LY L+    M  + +  ++SNML + ++ PY V+ +V G+D     P + ++D  G 
Sbjct: 62  ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID---TAPHVFSIDAAGG 118
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            +    +   G  S  +YG+ E+ +   +  D+  + + +A+  A +R++ SG
Sbjct: 119 -SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 170

>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
           NGG+I+ + G++   +A D R  I   ++   ++ K+F  G ++ +   G A D   + +
Sbjct: 8   NGGTILGIAGEDFAVLAGDTR-NITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVK 66
Query: 66  KIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
           + +     Y    N +K+S       I ++LY +RF PY+V  ++ GLD E  +  + + 
Sbjct: 67  RFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD-EDGKGAVYSF 125
Query: 125 DLIGCVNQPSDFVVGGPCS-------DQLYGMCETLWEPN-----------LEPDDLFET 166
           D +G   +      G   S       +Q+    +  +EP            L  +++ + 
Sbjct: 126 DPVGSYEREQCRAGGAAASLIMPFLDNQV--NFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183
Query: 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           +  +  +A ER+   G G  + I+ +D V     + + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222

>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
           NGG+I+ + G++   +A D R  I   ++   ++ K+F  G ++ +   G A D   + +
Sbjct: 27  NGGTILGIAGEDFAVLAGDTR-NITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVK 85
Query: 66  KIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
           + +     Y    N +K+S       I ++LY +RF PY+V  ++ GLD E  +  + + 
Sbjct: 86  RFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD-EDGKGAVYSF 144
Query: 125 DLIGCVNQPSDFVVGGPCS-------DQLYGMCETLWEPN-----------LEPDDLFET 166
           D +G   +      G   S       +Q+    +  +EP            L  +++ + 
Sbjct: 145 DPVGSYEREQCRAGGAAASLIMPFLDNQV--NFKNQYEPGTNGKVKKPLKYLSVEEVIKL 202
Query: 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           +  +  +A ER+   G G  + I+ +D V     + + D
Sbjct: 203 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 241

>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 86/185 (46%), Gaps = 5/185 (2%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   ++ V +A D R        +   +K+ ++  ++   + G A D  + ++++  
Sbjct: 2   TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADC-SFWERLLA 60
Query: 70  RQ-NLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
           RQ  +YEL+   ++S      +++NM+Y+ +     +  M+ G D     P +  +D  G
Sbjct: 61  RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRG--PGLYYVDSEG 118
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
                + F V G  S   YG+ +  +  +LE +  ++   +A+  A  R+A SG    +Y
Sbjct: 119 NRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLY 177
Query: 189 IIEQD 193
            + +D
Sbjct: 178 HVRED 182

>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +I+A+     V +  D R    GTA+ +  F K+  +   ++  L G A D Q +     
Sbjct: 2   TIMAVEFDGGVVVGSDSRVS-AGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 69  FRQNLYELKENRKMSPKVLLA--MISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           ++          +  P VL A  ++ N+ Y+ R        +V G D      + G M  
Sbjct: 61  YQLE--LHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYGTMGG 117
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
           +  + QP  F +GG  S  +YG  +  ++P + P++       A+  A  R+  S  G V
Sbjct: 118 M-LIRQP--FTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGV 172
Query: 187 VYIIEQDKVTVRH 199
           +Y++      V H
Sbjct: 173 IYLVTITAAGVDH 185

>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 254

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 8   GGSIVAMTGKNCVAIACDKR--FGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
           G   V + GKNCV + C++R    +Q T +  +  K+ ++ SH+ +   GL  D++ + +
Sbjct: 30  GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPS--KVSKIDSHVVLSFSGLNADSRILIE 87
Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETAEPII 121
           K R     + L     ++ + L   ++ +   Y +  G  P+ V  ++ G DP   EP +
Sbjct: 88  KARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKL 147
Query: 122 GNMDLIGCVNQPSDFVVG 139
              +  G  +  S   +G
Sbjct: 148 YQTEPSGIYSSWSAQTIG 165

>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle Length = 243

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 7   NGGSIVAMTGKNCVAIACDKR--FGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
            G   V + GKNCV + C++R    +Q T +  +  K+ ++ SH+ +   GL  D++ + 
Sbjct: 29  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPS--KVSKIDSHVVLSFSGLNADSRILI 86
Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETAEPI 120
           +K R     + L     ++ + L   ++ +   Y +  G  P+ V  ++ G DP   EP 
Sbjct: 87  EKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 146
Query: 121 IGNMDLIGCVNQPSDFVVG 139
           +   +  G  +  S   +G
Sbjct: 147 LYQTEPSGIYSSWSAQTIG 165

>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 7   NGGSIVAMTGKNCVAIACDKR--FGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
            G   V + GKNCV + C++R    +Q T +  +  K+ ++ SH+ +   GL  D++ + 
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPS--KVSKIDSHVVLSFSGLNADSRILI 84
Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETAEPI 120
           +K R     + L     ++ + L   ++ +   Y +  G  P+ V  ++ G DP   EP 
Sbjct: 85  EKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 144
Query: 121 IGNMDLIGCVNQPSDFVVG 139
           +   +  G  +  S   +G
Sbjct: 145 LYQTEPSGIYSSWSAQTIG 163

>pdb|1VSY|D Chain D, Proteasome Activator Complex Length = 227

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 7   NGGSIVAMTGKNCVAIACDKR--FGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
            G   V + GKNCV + C++R    +Q T +  +  K+ ++ SH+ +   GL  D++ + 
Sbjct: 13  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPS--KVSKIDSHVVLSFSGLNADSRILI 70
Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETAEPI 120
           +K R     + L     ++ + L   ++ +   Y +  G  P+ V  ++ G DP   EP 
Sbjct: 71  EKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 130
Query: 121 IGNMDLIGCVNQPSDFVVG 139
           +   +  G  +  S   +G
Sbjct: 131 LYQTEPSGIYSSWSAQTIG 149

>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 198

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 85/188 (45%), Gaps = 5/188 (2%)
Query: 11  IVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFR 70
           I+ +  ++ V +A  K      + L D+  K  Q+  H  +   G A DT    + I+  
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 71  QNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
             LY ++E+ ++SP+ + + +   L +  R   PY V  ++ G D +  +P +  +D +G
Sbjct: 64  IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123
Query: 129 C-VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
             V  P  +   G      + + +  + P++  ++  + +   +    +R  +   G +V
Sbjct: 124 TKVELP--YGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIV 181
Query: 188 YIIEQDKV 195
            I+++D +
Sbjct: 182 KIVDKDGI 189

>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 82/175 (46%), Gaps = 5/175 (2%)
Query: 20  VAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQ-NLYELKE 78
           V +A D R        +   +K+ ++  ++   + G A D  + ++++  RQ  +YEL+ 
Sbjct: 12  VIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADC-SFWERLLARQCRIYELRN 70
Query: 79  NRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVV 138
             ++S      +++NM+Y+ +     +  M+ G D     P +  +D  G     + F V
Sbjct: 71  KERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRG--PGLYYVDSEGNRISGTAFSV 128
Query: 139 GGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD 193
            G  S   YG+ +  +  +L+ ++ ++   +A+  A  R+A SG    +Y + +D
Sbjct: 129 -GSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVRED 182

>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 5/174 (2%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNF-QKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +I+A+     V +  D R    G+ +A+    K+  +  H++    G A DTQ V   + 
Sbjct: 2   TIMAVQFNGGVVLGADSRT-TTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVT 60
Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
           ++   + ++ N         ++   M Y  R        ++ G DP+    +  ++ + G
Sbjct: 61  YQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVY-SVPMGG 118
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            + + S F +GG  S  +YG  +  +   +  D+  +  A AL  A ER+  SG
Sbjct: 119 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 171

>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 86/193 (44%), Gaps = 6/193 (3%)
Query: 3   IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQT 62
           I   +G + +A   +  + +A D R        +   +K+ ++   +   + G A D Q 
Sbjct: 70  IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQF 129
Query: 63  VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIG 122
               +  +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P I 
Sbjct: 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEG-PTIY 188
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQL--YGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
            +D  G   +   F VG   S Q   YG+ ++ ++ +L  +D      ++++ A  R+A 
Sbjct: 189 YVDSDGTRLKGDIFCVG---SGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 245
Query: 181 SGWGAVVYIIEQD 193
           SG    +Y + +D
Sbjct: 246 SGGSVNLYHVTED 258

>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 86/193 (44%), Gaps = 6/193 (3%)
Query: 3   IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQT 62
           I   +G + +A   +  + +A D R        +   +++ ++   +   + G A D Q 
Sbjct: 70  IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQF 129
Query: 63  VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIG 122
               +  +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P I 
Sbjct: 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEG-PTIY 188
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQL--YGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
            +D  G   +   F VG   S Q   YG+ ++ ++ +L  +D      ++++ A  R+A 
Sbjct: 189 YVDSDGTRLKGDIFCVG---SGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 245
Query: 181 SGWGAVVYIIEQD 193
           SG    +Y + +D
Sbjct: 246 SGGSVNLYHVTED 258

>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 2/184 (1%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   +  + +A D R        +   +K+ ++   +   + G A D Q     +  
Sbjct: 2   TTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P I  +D  G 
Sbjct: 62  QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEG-PTIYYVDSDGT 120
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
             +   F V G      YG+ ++ ++ +L  +D      ++++ A  R+A SG    +Y 
Sbjct: 121 RLKGDIFCV-GSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179
Query: 190 IEQD 193
           + +D
Sbjct: 180 VTED 183

>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + + +  K+ V +A D+R   +   +  + +KIFQ+  H+     GL  D + +  +
Sbjct: 37  RGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEKIFQIDDHVAAATSGLVADARVLIDR 95
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETA 117
            R    +Y L    ++S ++L   I ++   Y +  G  P+ V  ++ G+D   A
Sbjct: 96  ARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEA 150

>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 81/184 (44%), Gaps = 2/184 (1%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   +  + +A D R        +   +++ ++   +   + G A D Q     +  
Sbjct: 2   TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P I  +D  G 
Sbjct: 62  QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEG-PTIYYVDSDGT 120
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
             +   F V G      YG+ ++ ++ +L  +D      ++++ A  R+A SG    +Y 
Sbjct: 121 RLKGDIFCV-GSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179
Query: 190 IEQD 193
           + +D
Sbjct: 180 VTED 183

>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALADNF-QKIFQVGSHMYVGLPGLATDTQTVYQK 66
           G SI+A+T K+ V +  D R    G  +A+    K+ +V   ++    G A DTQ +   
Sbjct: 9   GASIMAVTFKDGVILGADSRT-TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           +++   LY   +    S +   ++   + YE +        +V G D +    +   + L
Sbjct: 68  VQYHLELY-TSQYGTPSTETAASVFKELCYENK-DNLTAGIIVAGYDDKNKGEVY-TIPL 124
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            G V++   + + G  S  +YG C+  +  N+  ++  + I  +L  A + +  SG
Sbjct: 125 GGSVHKLP-YAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179

>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNF-QKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +I+A+     V +  D R    G+ +A+    K+  +   ++    G A DTQ V   + 
Sbjct: 2   TIMAVQFDGGVVLGADSRT-TTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
           ++   + ++ N         ++   M Y  R        ++ G DP+    +  ++ + G
Sbjct: 61  YQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVY-SVPMGG 118
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            + + S F +GG  S  +YG  +  +   +  ++  +  A AL  A ER+  SG
Sbjct: 119 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 171

>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 80/184 (43%), Gaps = 3/184 (1%)
Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   ++ V +A D R        +    K+ ++  ++   + G A D Q   + +  
Sbjct: 2   TTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAK 61
Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
              LY L+   ++S      ++SNM+ + R     +  M+ G D +   P +  +D  G 
Sbjct: 62  ECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKG--PGLYYVDDNGT 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
                 F   G  +   YG+ ++ +  +L P++ ++   +A+  A  R+  SG    +Y 
Sbjct: 120 RLSGQMFST-GSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYH 178
Query: 190 IEQD 193
           +++D
Sbjct: 179 MKED 182

>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALADNF-QKIFQVGSHMYVGLPGLATDTQTVYQK 66
           G SI+A+T K+ V +  D R    G  +A+    K+ +V   ++    G A DTQ +   
Sbjct: 19  GTSIMAVTFKDGVILGADSRT-TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 77
Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           +++   LY  +     S +   ++   + YE +        +V G D +    +   + L
Sbjct: 78  VQYHLELYTSQYGTP-STETAASVFKELCYENK-DNLTAGIIVAGYDDKNKGEVY-TIPL 134
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            G V++   + + G  S  +YG C+  +  N+  ++  + I  +L  A + +  SG
Sbjct: 135 GGSVHKLP-YAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1iru_J	205	20S proteasome; cell cycle, immune response, prote	6e-93
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	5e-89
1iru_M	213	20S proteasome; cell cycle, immune response, prote	1e-78
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	3e-70
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	1e-68
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	3e-68
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	5e-66
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	1e-62
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	2e-59
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	2e-57
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	2e-57
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	2e-56
1iru_K	201	20S proteasome; cell cycle, immune response, prote	3e-56
1iru_H	205	20S proteasome; cell cycle, immune response, prote	4e-52
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	5e-48
1iru_L	204	20S proteasome; cell cycle, immune response, prote	3e-41
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	1e-33
1iru_N	219	20S proteasome; cell cycle, immune response, prote	2e-32
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	9e-31
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	1e-30
1iru_I	234	20S proteasome; cell cycle, immune response, prote	1e-29
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	1e-29
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	5e-27
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	8e-26
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	6e-25
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	6e-20
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	3e-15
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	8e-07
1iru_F	263	20S proteasome; cell cycle, immune response, prote	1e-06
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	5e-06
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	6e-06
1iru_C	261	20S proteasome; cell cycle, immune response, prote	6e-06
1iru_G	254	20S proteasome; cell cycle, immune response, prote	8e-06
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	1e-05
1iru_D	248	20S proteasome; cell cycle, immune response, prote	1e-05
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	2e-05
1iru_B	233	20S proteasome; cell cycle, immune response, prote	3e-05
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	4e-05
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	4e-05
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	4e-05
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	4e-05
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	5e-05
1iru_A	246	20S proteasome; cell cycle, immune response, prote	7e-05
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	7e-05
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	7e-05
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	8e-05
1iru_E	241	20S proteasome; cell cycle, immune response, prote	3e-04
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	7e-04

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  269 bits (689), Expect = 6e-93
 Identities = 124/205 (60%), Positives = 168/205 (81%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
           MSIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD 
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           QTV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P 
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180

Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
           SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  259 bits (663), Expect = 5e-89
 Identities = 111/203 (54%), Positives = 156/203 (76%), Gaps = 1/203 (0%)

Query: 3   IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQT 62
             + NGG +VAMTGK+CVAIACD R G Q   +++ F+KIF  G H+++G+ GLATD  T
Sbjct: 3   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTT 61

Query: 63  VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIG 122
           + +  R++ NLY+LKE R + P+    ++S+ LYERRFGPYFV P+V G++ ++ +P I 
Sbjct: 62  LNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIA 121

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
             DLIGC+++  DF+V G  SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SG
Sbjct: 122 GFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSG 181

Query: 183 WGAVVYIIEQDKVTVRHVKTRMD 205
           WGAVVYII++D+V  R++K R D
Sbjct: 182 WGAVVYIIKKDEVVKRYLKMRQD 204

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  233 bits (596), Expect = 1e-78
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 11/213 (5%)

Query: 2   SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
           S   +NGG+I+A+ G++   +A D R     +    +  K +++     +G  G   D  
Sbjct: 3   SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 62

Query: 62  TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
           T+ + I  R  +Y+   N+ M+   + AM+S +LY RRF PY+V  ++ GLD E  +  +
Sbjct: 63  TLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLD-EEGKGAV 121

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCE---------TLWEPNLEPDDLFETIAQALV 172
            + D +G   Q   F  GG  S  L  + +          +    L  D     +    +
Sbjct: 122 YSFDPVGSY-QRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180

Query: 173 NACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           +A ER+  +G    + I+ ++ +    V  R D
Sbjct: 181 SAAERDVYTGDALRICIVTKEGIREETVSLRKD 213

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score =  212 bits (541), Expect = 3e-70
 Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 20/219 (9%)

Query: 5   TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
             NGG+I+ + G++   +A D R     +  +    K+F  G ++ +   G A D   + 
Sbjct: 6   GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65

Query: 65  QKIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
           ++ +     Y    N +K+S       I ++LY +RF PY+V  ++ GLD +  +  + +
Sbjct: 66  KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDG-KGAVYS 124

Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCET-----------------LWEPNLEPDDLFET 166
            D +G   +      GG  +  +    +                       L  +++ + 
Sbjct: 125 FDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183

Query: 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           +  +  +A ER+   G G  + I+ +D V     + + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score =  207 bits (529), Expect = 1e-68
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 4/194 (2%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +I+A+     V +  D R       +   F K+  +   ++  L G A D Q +     +
Sbjct: 2   TIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +  L+ L+            ++ N+ Y+ R        +V G D      +      +G 
Sbjct: 62  QLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV---YGTMGG 117

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
           +     F +GG  S  +YG  +  ++P + P++       A+  A  R+  SG    +  
Sbjct: 118 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVT 177

Query: 190 IEQDKVTVRHVKTR 203
           I    V  R +   
Sbjct: 178 ITAAGVDHRVILGD 191

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score =  206 bits (526), Expect = 3e-68
 Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + V +  K+ V +A +KR  +     +   +KI+Q+   M +   G   D Q + + I+ 
Sbjct: 2   TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
             NLYE++  RK + + +  + SN+L   R+ PY V+ ++ G+D E     I ++D IG 
Sbjct: 62  EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEG--KSIYSIDPIGG 119

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
             +  D V  G  S   YG+ E  + P +  D+  E   +A+ +A +R++ SG G  V  
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179

Query: 190 IEQDKVT 196
           I +D+  
Sbjct: 180 ITEDEFY 186

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  201 bits (513), Expect = 5e-66
 Identities = 11/193 (5%), Positives = 38/193 (19%), Gaps = 5/193 (2%)

Query: 4   MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
            +     +  +                +   +    + + +  + + +            
Sbjct: 1   GS----HMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDR 56

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
               +  +     K  +                        +E  +  L     E  I  
Sbjct: 57  RITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGE-EISIEM 115

Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
           +    C  + +    GG     +  +   + +      +   + A     A    +    
Sbjct: 116 LAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPV 175

Query: 184 GAVVYIIEQDKVT 196
              +   E     
Sbjct: 176 VMELLEKEYRDDI 188

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  192 bits (490), Expect = 1e-62
 Identities = 37/195 (18%), Positives = 84/195 (43%), Gaps = 7/195 (3%)

Query: 4   MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
           M      I+ +  ++ V +A  K      + L D+  K  Q+  H  +   G A DT   
Sbjct: 1   MD----IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPII 121
            + I+    LY ++E+ ++SP+ + + +   L +  R   PY V  ++ G D +  +P +
Sbjct: 57  AEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPEL 116

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
             +D +G       +   G      + + +  + P++  ++  + +   +    +R  + 
Sbjct: 117 YQIDYLGTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMD 175

Query: 182 GWGAVVYIIEQDKVT 196
             G +V I+++D + 
Sbjct: 176 FKGVIVKIVDKDGIR 190

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  186 bits (474), Expect = 2e-59
 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 14/202 (6%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G S+++M   N V IA D           +  +++  VG +  VG+ G  +D Q + + 
Sbjct: 40  TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 99

Query: 67  IRFRQNLYELKEN-----RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEP 119
           ++                  + P  +   ++ ++Y+RR    P +   +V G+     + 
Sbjct: 100 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQ 158

Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----PNLEPDDLFETIAQALVNA 174
            +  ++L+G     S  +  G  +     +   + +     P        E I  A+   
Sbjct: 159 FLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 217

Query: 175 CERNAVSGWGAVVYIIEQDKVT 196
             R+A S     + II+++   
Sbjct: 218 YYRDARSSRNFSLAIIDKNTGL 239

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  179 bits (457), Expect = 2e-57
 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 14/202 (6%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G S+++M   N V IA D           +  +++  VG +  VG+ G  +D Q + + 
Sbjct: 7   TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 66

Query: 67  IRFRQNLYELKEN-----RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEP 119
           ++                  + P  +   ++ ++Y+RR    P +   +V G+     + 
Sbjct: 67  LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQ 125

Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----PNLEPDDLFETIAQALVNA 174
            +  ++L+G     S  +  G  +     +   + +     P        E I  A+   
Sbjct: 126 FLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184

Query: 175 CERNAVSGWGAVVYIIEQDKVT 196
             R+A S     + II+++   
Sbjct: 185 YYRDARSSRNFSLAIIDKNTGL 206

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score =  179 bits (456), Expect = 2e-57
 Identities = 35/187 (18%), Positives = 79/187 (42%), Gaps = 2/187 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   +  + +A D R        +   +++ ++   +   + G A D Q     +  
Sbjct: 2   TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P I  +D  G 
Sbjct: 62  QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE-GPTIYYVDSDGT 120

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
                D    G      YG+ ++ ++ +L  +D      ++++ A  R+A SG    +Y 
Sbjct: 121 RL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179

Query: 190 IEQDKVT 196
           + +D   
Sbjct: 180 VTEDGWI 186

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score =  179 bits (455), Expect = 2e-56
 Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 2/196 (1%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
             I   +G + +A   +  + +A D R        +   +K+ ++   +   + G A D 
Sbjct: 68  CKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADC 127

Query: 61  QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
           Q     +  +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P 
Sbjct: 128 QFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEG-PT 186

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           I  +D  G      D    G      YG+ ++ ++ +L  +D      ++++ A  R+A 
Sbjct: 187 IYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 245

Query: 181 SGWGAVVYIIEQDKVT 196
           SG    +Y + +D   
Sbjct: 246 SGGSVNLYHVTEDGWI 261

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  175 bits (447), Expect = 3e-56
 Identities = 36/194 (18%), Positives = 78/194 (40%), Gaps = 8/194 (4%)

Query: 4   MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
           M      ++ + G + V +A D+        + D+  K+F++   + +   G A DT   
Sbjct: 1   ME----YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPII 121
            + I+    LY+++   ++SP          L +  R   PY V  ++ G D     P +
Sbjct: 57  AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHE-GPAL 115

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
             MD +  +   + F   G  +     + +  + P +  +   E + + L    +R  ++
Sbjct: 116 YYMDYLAAL-AKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILN 174

Query: 182 GWGAVVYIIEQDKV 195
                V II+++ +
Sbjct: 175 LPTFSVRIIDKNGI 188

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score =  165 bits (420), Expect = 4e-52
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 3/192 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +I+A+     V +  D R             K+  +   ++    G A DTQ V   + +
Sbjct: 2   TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +   + ++ N         ++   M Y  R        ++ G DP+     + ++ + G 
Sbjct: 62  QLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEG-GQVYSVPMGGM 119

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
           +     F +GG  S  +YG  +  +   +  ++  +  A AL  A ER+  SG    +  
Sbjct: 120 M-VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178

Query: 190 IEQDKVTVRHVK 201
           I +  V  + + 
Sbjct: 179 IAESGVERQVLL 190

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score =  155 bits (393), Expect = 5e-48
 Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
            G SI+A+T K+ V +  D R    G  +A+    K+ +V   ++    G A DTQ +  
Sbjct: 8   LGASIMAVTFKDGVILGADSRTT-TGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
            +++   LY  +     +     ++   + YE +        +V G D +  +  +  + 
Sbjct: 67  IVQYHLELYTSQYGTPSTETAA-SVFKELCYENK-DNLTAGIIVAGYDDKN-KGEVYTIP 123

Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
           L G V     + + G  S  +YG C+  +  N+  ++  + I  +L  A + +  SG   
Sbjct: 124 LGGSV-HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVI 182

Query: 186 VVYIIEQDKVT 196
            + ++    V 
Sbjct: 183 RMVVLTAAGVE 193

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score =  138 bits (349), Expect = 3e-41
 Identities = 38/188 (20%), Positives = 81/188 (43%), Gaps = 5/188 (2%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           + +A   ++ V +A D R    G  +A    +K+ ++  ++   + G A D     + + 
Sbjct: 2   TTLAFKFRHGVIVAADSRAT-AGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
            +  +YEL+   ++S      +++NM+Y+ +     +  M+ G D     P +  +D  G
Sbjct: 61  RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEG 118

Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
                      G  S   YG+ +  +  +LE +  ++   +A+  A  R+A SG    +Y
Sbjct: 119 NR-ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLY 177

Query: 189 IIEQDKVT 196
            + +D   
Sbjct: 178 HVREDGWI 185

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score =  118 bits (299), Expect = 1e-33
 Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 1   MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATD 59
           M+     G + V +T K+ V +A ++R       +   N +K+FQ+ ++  + + GL  D
Sbjct: 1   MNQTLETGTTTVGITLKDAVIMATERRVT-MENFIMHKNGKKLFQIDTYTGMTIAGLVGD 59

Query: 60  TQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEP 119
            Q + + ++    LY L+    M  + +  ++SNML + ++ PY V+ +V G+D     P
Sbjct: 60  AQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT---AP 116

Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNA 179
            + ++D  G       +   G  S  +YG+ E+ +   +  D+  + + +A+  A +R++
Sbjct: 117 HVFSIDAAGGS-VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDS 175

Query: 180 VSGWGAVVYIIEQDKVTVR 198
            SG    V +I +    V+
Sbjct: 176 ASGGMIDVAVITRKDGYVQ 194

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  115 bits (290), Expect = 2e-32
 Identities = 38/201 (18%), Positives = 80/201 (39%), Gaps = 12/201 (5%)

Query: 3   IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQ 61
           ++T  G S++ +  +  V IA D   G  G+     N  +I +V +   +G  G   D Q
Sbjct: 5   MVT--GTSVLGVKFEGGVVIAADML-GSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61

Query: 62  TVYQKIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAE 118
            + Q +       EL  +    SP+ + + ++  +Y RR    P +   ++ G      E
Sbjct: 62  YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG--E 119

Query: 119 PIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL--WEPNLEPDDLFETIAQALVNACE 176
             +G +D++G V   +  +  G  +     +   +   +P L   +  + + + +     
Sbjct: 120 SFLGYVDMLG-VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178

Query: 177 RNAVSGWGAVVYIIEQDKVTV 197
           R+A S        + +  V +
Sbjct: 179 RDARSYNRFQTATVTEKGVEI 199

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score =  113 bits (283), Expect = 9e-31
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 10/200 (5%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           G +IVA+     V +A D+R   QG  ++  + +K++    +   G+ G A       + 
Sbjct: 57  GTTIVALKYPGGVVMAGDRR-STQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARL 115

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE---RRFGPYFVEPMVVGLDPETAEPIIG- 122
                  YE  E   ++    +  ++ M+              P++ G D   ++P    
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175

Query: 123 ----NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERN 178
                    G   +   +   G  S       + L+    + D       +AL +A + +
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDD 235

Query: 179 AVSGWGAVVYIIEQDKVTVR 198
           + +G   +V  I    V + 
Sbjct: 236 SATGGPDLVRGIFPTAVIID 255

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score =  112 bits (281), Expect = 1e-30
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 6/190 (3%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           G +IV +   N V IA D R   QG  +AD N  K+ ++   ++    G A DT+ V Q 
Sbjct: 29  GTTIVGVKFNNGVVIAADTRS-TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           I     L+ L  +R+      L M+   L++ + G      +V G+DP      + ++  
Sbjct: 88  IGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHA 144

Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
            G       ++  G  S     + E+ W+ +L  ++  +  + A+      +  SG    
Sbjct: 145 HGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 203

Query: 187 VYIIEQDKVT 196
           V ++E  K  
Sbjct: 204 VCVMEIGKDA 213

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  108 bits (272), Expect = 1e-29
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 6/188 (3%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +I  +  K+ + +  D R   +G  +AD N  KI  +  ++Y    G A DT    Q I 
Sbjct: 2   TIAGVVYKDGIVLGADTR-ATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
               L+ L   R         M+  ML+  R G      ++ G+D     P + ++   G
Sbjct: 61  SNLELHSLSTGRLPRVVTANRMLKQMLFRYR-GYIGAALVLGGVDVT--GPHLYSIYPHG 117

Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
                  +V  G  S     + E  + P++E ++    +++A+      +  SG    + 
Sbjct: 118 ST-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176

Query: 189 IIEQDKVT 196
           +I ++K+ 
Sbjct: 177 VISKNKLD 184

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score =  108 bits (271), Expect = 1e-29
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 6/188 (3%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +IV +   N V IA D R   QG  +AD N  K+ ++   ++    G A DT+ V Q I 
Sbjct: 2   TIVGVKFNNGVVIAADTRS-TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
               L+ L  +R+      L M+   L++ + G      +V G+DP      + ++   G
Sbjct: 61  SNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHG 117

Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
                  ++  G  S     + E+ W+ +L  ++  +  + A+      +  SG    V 
Sbjct: 118 ST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVC 176

Query: 189 IIEQDKVT 196
           ++E  K  
Sbjct: 177 VMEIGKDA 184

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score =  103 bits (257), Expect = 5e-27
 Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 10/200 (5%)

Query: 8   GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           G +IVA+T K  V +A D+R   QG  +A  + + ++    +   G+ G A     + + 
Sbjct: 65  GTTIVALTYKGGVLLAGDRR-ATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRL 123

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYF---VEPMVVGLDP----ETAEP 119
                  YE  E   ++       +++M+            V P++VG D     E+   
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183

Query: 120 IIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERN 178
            I + D++G   +    +   G  S       + ++ P+ + +       ++L +A + +
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDD 243

Query: 179 AVSGWGAVVYIIEQDKVTVR 198
           + +G   +   I    VT+ 
Sbjct: 244 SATGGPDLTRGIYPTAVTIT 263

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 98.8 bits (246), Expect = 8e-26
 Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 10/198 (5%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +IVA+T K  V +A D+R   QG  +A  + +K++    +   G+ G A     + +   
Sbjct: 2   TIVALTYKGGVLLAGDRRA-TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYF---VEPMVVGLDP----ETAEPII 121
                YE  E   ++       +++M+            V P++VG D     E+    I
Sbjct: 61  VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120

Query: 122 GNMDLIGCV-NQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
            + D++G    + + +   G  S       + ++ P+ + +       ++L +A + ++ 
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 180

Query: 181 SGWGAVVYIIEQDKVTVR 198
           +G   +   I    VT+ 
Sbjct: 181 TGGPDLTRGIYPTAVTIT 198

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 96.6 bits (241), Expect = 6e-25
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 6/190 (3%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
           +I  +  ++ V +  D R     + +AD + +KI  +   +Y    G+A DT+   +   
Sbjct: 2   TIAGLVFRDGVILGADTRA-TNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
            +  L+ L   R+     +  ++   L+  + G      +V G+D     P +  +   G
Sbjct: 61  SKMELHALSTGREPRVATVTRILRQTLFRYQ-GHVGASLVVGGVDLN--GPQLYEVHPHG 117

Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
             +    F   G        + E  ++PN+  +   E + +A+      +  SG      
Sbjct: 118 SYS-RLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDAC 176

Query: 189 IIEQDKVTVR 198
           +I      ++
Sbjct: 177 VITAGGAKLQ 186

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score = 83.9 bits (207), Expect = 6e-20
 Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 14/182 (7%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G S+V +T ++ V    +          +    K+ ++   +     G   + + + + 
Sbjct: 26  RGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77

Query: 67  IRFRQNLYELKENRK-MSPKVLLAMISNML---YERRFGPYFVEPMV--VGLDPETAEPI 120
                ++     +R+ ++ + L    +  L   +  +  PY VE  V  VG       P 
Sbjct: 78  GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 137

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           +  +   G +     FVV G  ++ +       +  +L+ +        AL         
Sbjct: 138 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 197

Query: 181 SG 182
             
Sbjct: 198 KR 199

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score = 70.7 bits (173), Expect = 3e-15
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 14/182 (7%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
              S+VA+     V    +          + + QKI ++   +     G   +   + + 
Sbjct: 26  RAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRG 77

Query: 67  IRFRQNLYELKENRK-MSPKVLLAMISNML---YERRFGPYFVEPMV--VGLDPETAEPI 120
                +      +R+ ++ + L  + +  L   +  +  PY VE  V  V    ET  P 
Sbjct: 78  GIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPE 137

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           +  +   G +     FVV G  ++ +    +  +  N    D       AL       + 
Sbjct: 138 LYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSG 197

Query: 181 SG 182
             
Sbjct: 198 GD 199

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G   V +       +   KR       L+   +KI +   HM + L GLA D + +   
Sbjct: 30  QGSVTVGLRSNTHAVLVALKR---NADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
           +R + N   L  NRK++ +    ++ +        Y  R  PY V  +++G D  
Sbjct: 87  LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGR--PYGVGLLIIGYDKS 139

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + V +  K    +   KR     + LA + +KI  V +H+ + + GL  D + +   
Sbjct: 31  QGSATVGLKSKTHAVLVALKR---AQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 87

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
           +R          +R +    L+++I +        Y RR  PY V  ++ G D  
Sbjct: 88  MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR--PYGVGLLIAGYDDM 140

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 14/122 (11%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALAD---NFQKIFQVGSHMYVGLPGLATDTQTV 63
            G   V + GKNCV + C++R       L D      K+ ++ SH+ +   GL  D++ +
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRS---TLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRIL 83

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPETA 117
            +K R     + L     ++ + L   ++ +          R  P+ V  ++ G DP   
Sbjct: 84  IEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVR--PFGVSTLIAGFDPRDD 141

Query: 118 EP 119
           EP
Sbjct: 142 EP 143

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
            G + + +  K  V +  +KR       L  +   KI ++  H+   + GL  D +++ +
Sbjct: 25  LGSTAIGIATKEGVVLGVEKR--ATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIE 82

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNM-----LYERRFGPYFVEP-----MVVGLDPE 115
             R     + L  +  ++ + L   + ++                 P     ++ G D +
Sbjct: 83  HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 142

Query: 116 T 116
            
Sbjct: 143 D 143

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNF--QKIFQVGSHMYVGLPGLATDTQTVY 64
           + G+ + +   + V +A ++R       L + F  +KI+++   M   + G+ +D   + 
Sbjct: 30  HAGTCLGILANDGVLLAAERR--NIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLT 87

Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
            ++R     Y L+    +  + L+  + ++         +R  P+ V  + +G D   
Sbjct: 88  NELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--PFGVSLLYIGWDKHY 143

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
           N  + + +  K+ V    +K   +      +    ++F V  H+ + + GL  D +++  
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKL--VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
             R   + +       +  K L   ++  +         R  P+    M+       
Sbjct: 90  IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVR--PFGCSFMLGSYSVND 144

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
            G + + +   N V IA +K+              K+  +   +     G+  D + +  
Sbjct: 30  QGVTSLGIKATNGVVIATEKK--SSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVD 87

Query: 66  KIRFR-QNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
           K R      Y+         K+L++ ++ ++         R  P+ V  ++ G D   
Sbjct: 88  KSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVR--PFGVSLLIAGHDEFN 143

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
            G + V + G++ V +  +K+             +KI  +  ++ +   GL  D + V  
Sbjct: 28  KGSTAVGVRGRDIVVLGVEKK--SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVIN 85

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
           + R     + L     ++ + +   I+++         RR  P+ +  ++VG D +
Sbjct: 86  RARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGISALIVGFDFD 139

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 11  IVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIRF 69
           IV++     V +  D +  +  T +  N +K+ ++ +  +  G  G   D  T+++    
Sbjct: 3   IVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFER 62

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFV---EPMVVGLDPETAEPIIGNMDL 126
           +  +++    +              L +           E +++    +  +P    +  
Sbjct: 63  KLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILA 122

Query: 127 IG 128
           IG
Sbjct: 123 IG 124

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
            G   V +   N V +A +K+   +       +  K+  +  H+ +   G+  D + +  
Sbjct: 30  GGAPSVGIKAANGVVLATEKK--QKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVH 87

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
           + R     Y L     +    L+  +++++         R  P+ V  ++ G +  
Sbjct: 88  RARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVR--PFGVSLLICGWNEG 141

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 12/118 (10%)

Query: 7   NGGS-IVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVY 64
                 +A+ GK+C  +   K+  +    L       IF +   + + + G   D +   
Sbjct: 28  QTNINSLAVRGKDCTVVISQKK--VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAA 85

Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
            + +     +  K    M   VL   ++N+          R  P  V    V +D E 
Sbjct: 86  LRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMR--PLGVILTFVSVDEEL 141

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
            G + + +  K  V +  DKR  +    L  D  +KI+++  H+     GL  D + +  
Sbjct: 33  RGATAIGIKCKEGVILIADKR--VGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLID 90

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLD 113
           + R    +  L  +  ++ K L   I +           R  P+ V  ++ G++
Sbjct: 91  RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVR--PFGVSLLIAGVN 142

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 18/119 (15%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALAD---NFQKIFQVGSHMYVGLPGLATDTQTV 63
           + G+ + +   + + +A +++     + L +   + +K++++   + V + GL  D + +
Sbjct: 30  HAGTAIGIMASDGIVLAAERK---VTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEIL 86

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
               R     Y    N  +  ++L+  +S++          R  P+ V  +  G D   
Sbjct: 87  INTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLR--PFGVSFIYAGYDDRY 143

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
           NG + + +   + V  A +K   I    L      KI  V  H+     GL  D + +  
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKL--ITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVN 86

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
           + R     ++      +        +   +         R  P+ V  +  G+D  
Sbjct: 87  RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR--PFGVSTIFGGVDKN 140

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 7   NGGS-IVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVY 64
            GG   VA+ GK+C  I   K+  +    L  +    +F++  ++   + G+  D+++  
Sbjct: 34  QGGLTSVAVRGKDCAVIVTQKK--VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQV 91

Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
           Q+ R+    ++ K   ++   +L   I+++        E R  P     +++G+D E 
Sbjct: 92  QRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMR--PLGCCMILIGIDEEQ 147

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 18/162 (11%)

Query: 11  IVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIRF 69
           I+ +       +  D +     T L  N +K+ ++G   +  G  G   D  T++ +   
Sbjct: 3   ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +   +     +         +  +   +R         +V   D E    I GN +    
Sbjct: 63  KLREWGGNLTKAAV-----ELAKDWRTDRVLRRLEALLLVA--DKENIFIISGNGE---- 111

Query: 130 VNQPSDFV--VGGPCSDQLYGMCETLWEPNLEPDDLFETIAQ 169
           V QP D    +G      L      L   +L        I +
Sbjct: 112 VIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA----REIVE 149

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
            G + + M   N V +  DK+  ++   +  ++ +KI  +  ++     GL  D + +  
Sbjct: 33  KGSTALGMKFANGVLLISDKK--VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 90

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
             R      ++     ++ + L+  +++ +         R  PY V  +  G+D  
Sbjct: 91  FARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVR--PYGVSLIFAGIDQI 144

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
           NG + + +   + V  A +K   I    L      KI  V  H+     GL  D + +  
Sbjct: 33  NGTTSIGIKCNDGVVFAVEKL--ITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVN 90

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
           + R     ++      +        +   +         R  P+ V  +  G+D  
Sbjct: 91  RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR--PFGVSTIFGGVDKN 144

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
            G + + +     V +A +KR  I    +  +   KI ++ +H+   + GL  D +T+  
Sbjct: 33  LGSTAIGIQTSEGVCLAVEKR--ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLID 90

Query: 66  KIRFRQNLYELKENRKMSPKVLLAMISNM-----LYERRFG----PYFVEPMVVGLDPE 115
           K R     +    N  M+ + +   +SN+       +   G    P+ V  +  G+D +
Sbjct: 91  KARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK 149

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 16/168 (9%)

Query: 11  IVAMTGKNCVAIACDKR--FGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKI 67
           I A+  K   A++ D +  FG Q   +    +K+ ++ +  +  G  G   D  T+++K 
Sbjct: 8   IFAVQHKGRSAMSGDGQVTFG-QAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKF 66

Query: 68  RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
             +   Y     R    ++     S+ +  +         M++ ++ +T   + G  +  
Sbjct: 67  EAKLEEYNGNLKRAA-VELAKEWRSDKVLRKLEA------MLIVMNQDTLLLVSGTGE-- 117

Query: 128 GCVNQPSDFVVG-GPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNA 174
             V +P D ++  G   +        L +   E     E    AL  A
Sbjct: 118 --VIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=2.1e-53  Score=336.51  Aligned_cols=204  Identities=60%  Similarity=1.128  Sum_probs=194.7

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      ||||+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus         1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (205)
T 1iru_J            1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR   80 (205)
T ss_dssp             -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            89999999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecC-CCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCC
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDP-ETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLE  159 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~-~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~  159 (205)
                      +++++.+++++++++|++|..||++++|+||||+ + ++|+||.+||+|++.+..+|.++|+|+++++++||+.|+++|+
T Consensus        81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~-~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s  159 (205)
T 1iru_J           81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKT-FKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMD  159 (205)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTS-CCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCC-CCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCC
Confidence            9999999999999999988779999999999996 4 5899999999999743456799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                      ++||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus       160 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  205 (205)
T 1iru_J          160 PDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence            9999999999999999999999999999999999999999999987

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=4.5e-53  Score=336.47  Aligned_cols=203  Identities=26%  Similarity=0.448  Sum_probs=196.3

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      +|||.++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++++++
T Consensus         2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   81 (213)
T 1iru_M            2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK   81 (213)
T ss_dssp             CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc-------
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL-------  153 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~-------  153 (205)
                      +++++.+++++++++|++|.|||++++|+||||++ ++|+||.+||+|++ +++++.|+|+|+++++++||+.       
T Consensus        82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~-g~p~Ly~id~~G~~-~~~~~~aiGsg~~~a~~~Le~~~~~~~~~  159 (213)
T 1iru_M           82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGAVYSFDPVGSY-QRDSFKAGGSASAMLQPLLDNQVGFKNMQ  159 (213)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTT-SCEEEEEECTTSCE-EEESEEEEETTHHHHHHHHHHHTTCCSCS
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCC-CCEEEEEECCCCCE-EECCEEEEeeCHHHHHHHHhhcccccccc
Confidence            99999999999999999888999999999999976 57999999999998 6899999999999999999999       


Q ss_pred             --CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        154 --WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       154 --~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                        |+++|+++||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus       160 ~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  213 (213)
T 1iru_M          160 NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence              8899999999999999999999999999999999999999999999999987

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=6.4e-53  Score=337.66  Aligned_cols=203  Identities=21%  Similarity=0.389  Sum_probs=196.6

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-   79 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-   79 (205)
                      +|||.++|+|+|||+++||||||+|+|.+.|.++..++.+|||+|+++++|+++|..+|++.|.++++.+++.|+++++ 
T Consensus         2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   81 (222)
T 1ryp_M            2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND   81 (222)
T ss_dssp             CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999988889999999999999999999999999999999999999999999 


Q ss_pred             CcCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc------
Q psy15275         80 RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL------  153 (205)
Q Consensus        80 ~~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~------  153 (205)
                      ++++++.+|+++++++|.+|++||++++|+||||++ ++|+||.+||+|++ +++++.|+|+|+++++++||+.      
T Consensus        82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~-g~p~Ly~~dp~G~~-~~~~~~a~Gsg~~~a~~~Le~~~~~~~~  159 (222)
T 1ryp_M           82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDED-GKGAVYSFDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQ  159 (222)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTT-SCEEEEEECTTSCE-EEESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCC-CCeEEEEECCCcCE-EecCEEEEcCcHHHHHHHHhcccccccc
Confidence            999999999999999999888999999999999976 67999999999998 6899999999999999999998      


Q ss_pred             -----------CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        154 -----------WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       154 -----------~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                                 |+++|+++||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus       160 ~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d  222 (222)
T 1ryp_M          160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             BCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             cccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence                       8899999999999999999999999999999999999999999999999987

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=5.5e-52  Score=328.20  Aligned_cols=203  Identities=55%  Similarity=1.046  Sum_probs=193.3

Q ss_pred             CcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCc
Q psy15275          2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRK   81 (205)
Q Consensus         2 ~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   81 (205)
                      |||+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+ +++|+++|..+|++.+.++++.+++.|+++++++
T Consensus         2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   80 (204)
T 1ryp_J            2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA   80 (204)
T ss_dssp             CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            799999999999999999999999999999988888999999999 9999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275         82 MSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD  161 (205)
Q Consensus        82 ~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  161 (205)
                      ++++.+++++++++|.+|..||++++|+||||+.+++|+||.+||+|++.+..+|.++|+|+++++++||+.|+++|+++
T Consensus        81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e  160 (204)
T 1ryp_J           81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE  160 (204)
T ss_dssp             CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence            99999999999999998877999999999999722589999999999974445679999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                      ||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus       161 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  204 (204)
T 1ryp_J          161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence            99999999999999999999999999999999999999999987

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=1.5e-50  Score=322.83  Aligned_cols=192  Identities=24%  Similarity=0.394  Sum_probs=178.2

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      |+|+..+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++
T Consensus         1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (217)
T 1yar_H            1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV   80 (217)
T ss_dssp             --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            89999999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +++++.+++++++++|.+|.|||++++|+|||| +  ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus        81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~  156 (217)
T 1yar_H           81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T--APHVFSIDAAGGS-VEDIYASTGSGSPFVYGVLESQYSEKMTV  156 (217)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S--SEEEEEECTTCCE-EEESEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C--CCEEEEECCCCCe-EecCEEEEcCCHHHHHHHHHhhcccCCCH
Confidence            999999999999999998889999999999999 5  7999999999999 58899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeC-CcEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQ-DKVT  196 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~-~g~~  196 (205)
                      +||++++++||..+.++|..+++++++++|++ +|++
T Consensus       157 eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~  193 (217)
T 1yar_H          157 DEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYV  193 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEE
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEE
Confidence            99999999999999999999999999999999 7754

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.7e-49  Score=315.21  Aligned_cols=188  Identities=21%  Similarity=0.380  Sum_probs=180.4

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      |+|+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l   80 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC   80 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            79999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275         88 LAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEPDDLFET  166 (205)
Q Consensus        88 a~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l  166 (205)
                      ++++++++|.+|.+||+|++|+||||++ ++|+||.+||+|++ .+++ +.|+|+|+++++++||+.|+++|+++||+++
T Consensus        81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~l  158 (219)
T 3h4p_a           81 ATLLSNILHSSRMFPFLTQIIIGGYDLL-EGAKLFSLDPLGGM-NEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKL  158 (219)
T ss_dssp             HHHHHHHHHHTTTTTCCCCCEEEEEETT-TEEEEEEECSSCCE-EECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEEEEEEeCC-CCcEEEEECCCCce-EecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            9999999998888999999999999985 58999999999999 5788 9999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        167 IAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       167 ~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +++||..+.++|..++++++|++|+++|++.
T Consensus       159 a~~al~~~~~rd~~sg~~i~v~vi~~~g~~~  189 (219)
T 3h4p_a          159 ALNALKSAMERDTFSGNGISLAVITKDGVKI  189 (219)
T ss_dssp             HHHHHHHHHTSCSSCCSCCCEEEEETTEEEE
T ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEeCCCeEE
Confidence            9999999999999999999999999998654

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=9.9e-49  Score=312.69  Aligned_cols=198  Identities=19%  Similarity=0.224  Sum_probs=186.4

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-hcCCcCC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-KENRKMS   83 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~   83 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++ +++++++
T Consensus         5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~   84 (219)
T 1iru_N            5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS   84 (219)
T ss_dssp             CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred             ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            357999999999999999999999999999899999999999999999999999999999999999999997 8999999


Q ss_pred             HHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCC
Q psy15275         84 PKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLE  159 (205)
Q Consensus        84 ~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~  159 (205)
                      ++.+++++++++|.+|  +|||++++|+||||+  ++|+||.+||+|++ .++++.++|+|+++++++||+.|++  +|+
T Consensus        85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt  161 (219)
T 1iru_N           85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVA-YEAPSLATGYGAYLAQPLLREVLEKQPVLS  161 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCE-EECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCe-EECCeEEECccHHHHHHHHHhhcCCCCCCC
Confidence            9999999999999877  899999999999997  38999999999999 6899999999999999999999999  999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD  205 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~  205 (205)
                      ++||++++++||..+.++|..++++++|++|+++|+++.   +++..|+
T Consensus       162 ~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~  210 (219)
T 1iru_N          162 QTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWD  210 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCG
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhh
Confidence            999999999999999999999999999999999997655   3555663

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=2.6e-48  Score=306.68  Aligned_cols=186  Identities=28%  Similarity=0.423  Sum_probs=178.9

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEPDDLFETI  167 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~  167 (205)
                      +++++++|.+|.|||++++|+||||++  ||+||.+||+|++ .+++ +.|+|+|+++++++||+.|+++|+++||++++
T Consensus        81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~--gp~Ly~id~~G~~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la  157 (202)
T 1j2q_H           81 TLTSNLLNSYRYFPYLVQLLIGGIDSE--GKSIYSIDPIGGA-IEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA  157 (202)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEEEEETT--EEEEEEECTTCCE-EEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCceEEEEEEEEeCC--CCEEEEECCCCCe-eecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHH
Confidence            999999999888999999999999974  7999999999999 5888 99999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        168 AQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       168 ~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      .+||..+.++|..+++++++++|+++|++.
T Consensus       158 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  187 (202)
T 1j2q_H          158 VRAIYSAMKRDSASGDGIDVVKITEDEFYQ  187 (202)
T ss_dssp             HHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred             HHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence            999999999999999999999999998543

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=5.3e-48  Score=305.57  Aligned_cols=191  Identities=19%  Similarity=0.273  Sum_probs=182.8

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|. ||++++|+||||++ ++|+||.+||+|++ .+++++++|+|+++++++||+.|+++|+++||++++.
T Consensus        81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~-~gp~ly~~d~~G~~-~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~  157 (205)
T 1iru_H           81 SLFKEMCYRYRE-DLMAGIIIAGWDPQ-EGGQVYSVPMGGMM-VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTA  157 (205)
T ss_dssp             HHHHHHHHHTTT-TCCEEEEEEEEETT-TEEEEEEECTTSCC-EECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCc-CccEEEEEEEEeCC-CCCEEEEECCCCcE-EecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            999999998765 99999999999985 58999999999999 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      +||..+.++|..+++++++++|+++|.+++.++.
T Consensus       158 ~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~  191 (205)
T 1iru_H          158 NALALAMERDGSSGGVIRLAAIAESGVERQVLLG  191 (205)
T ss_dssp             HHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECG
T ss_pred             HHHHHHHHhccccCCcEEEEEEeCCCeEEEEeCh
Confidence            9999999999999999999999999998887765

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=3.1e-48  Score=312.52  Aligned_cols=192  Identities=18%  Similarity=0.285  Sum_probs=183.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-----hcC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-----KEN   79 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~   79 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.|.++++.+++.|++     +++
T Consensus         5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~   84 (233)
T 1ryp_N            5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE   84 (233)
T ss_dssp             CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred             ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence            357999999999999999999999999999899999999999999999999999999999999999999998     899


Q ss_pred             CcCCHHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC-
Q psy15275         80 RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP-  156 (205)
Q Consensus        80 ~~~~~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-  156 (205)
                      ++++++.+++++++++|.+|  ++||+|++|+||||++ ++|+||.+||+|++ .++++.++|+|+++++++||+.|++ 
T Consensus        85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~  162 (233)
T 1ryp_N           85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQFLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRE  162 (233)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT-SCEEEEEEETTCCE-ECCSEEECTHHHHHHHHHHTTTCSSG
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCC-CCEEEEEECCCcCe-EEcCEEEECcCHHHHHHHHHHhhccc
Confidence            99999999999999999876  7899999999999985 58999999999998 6899999999999999999999999 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEEEE
Q psy15275        157 ----NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVTVR  198 (205)
Q Consensus       157 ----~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~~~  198 (205)
                          +|+++||++++++||..+.++|..++++++|++|+++ |+++.
T Consensus       163 ~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~  209 (233)
T 1ryp_N          163 SDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK  209 (233)
T ss_dssp             GGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence                9999999999999999999999999999999999999 87664

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=5.8e-48  Score=305.36  Aligned_cols=193  Identities=20%  Similarity=0.286  Sum_probs=183.8

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++ +++
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v   84 (205)
T 1ryp_H            6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PST   84 (205)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCH
T ss_pred             CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCH
Confidence            4689999999999999999999999998888899999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      +.+++++++++|.+|.+ |++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus        85 ~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~-~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~  161 (205)
T 1ryp_H           85 ETAASVFKELCYENKDN-LTAGIIVAGYDDK-NKGEVYTIPLGGSV-HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV  161 (205)
T ss_dssp             HHHHHHHHHHHHHTTTT-CCEEEEEEEEETT-TEEEEEEECTTSCC-EEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhhhcC-ceEEEEEEEEecC-CCcEEEEECCCccE-EecCEEEEEecHHHHHHHHHhccCCCCCHHHHH
Confidence            99999999999988755 9999999999985 58999999999998 589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      +++++||..+.++|..++++++|++|+++|++.+.+.
T Consensus       162 ~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~~  198 (205)
T 1ryp_H          162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY  198 (205)
T ss_dssp             HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEec
Confidence            9999999999999999999999999999999887653

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=8.9e-48  Score=309.75  Aligned_cols=193  Identities=17%  Similarity=0.205  Sum_probs=183.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT   80 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence            69999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+ .+||++++|+||||++  ||+||++||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~l~~~l~~~-~~p~~v~llvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~  156 (234)
T 3unf_H           81 RILRQTLFRY-QGHVGASLVVGGVDLN--GPQLYEVHPHGSY-SRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLV  156 (234)
T ss_dssp             HHHHHHHHHT-TTCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCccEEEEEEEEeCC--CCEEEEECCCCCE-EeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHH
Confidence            9999998875 3699999999999984  8999999999999 5999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD  205 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~  205 (205)
                      +||..+.++|..++++++|++|+++|++..   .+|.+|+
T Consensus       157 ~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~  196 (234)
T 3unf_H          157 EAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPV  196 (234)
T ss_dssp             HHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCC
T ss_pred             HHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccc
Confidence            999999999999999999999999998765   4666774

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=7.1e-48  Score=303.25  Aligned_cols=189  Identities=19%  Similarity=0.297  Sum_probs=179.7

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      ++|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l   80 (198)
T 1ryp_K            1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV   80 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            58999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-C-CcceeeeEEEEecC-CCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         88 LAMISNMLYERR-F-GPYFVEPMVVGLDP-ETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        88 a~~i~~~~~~~r-~-~P~~v~~iv~G~d~-~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      ++++++++|.++ . +||++++|+||||+ + ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus        81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~-~~p~Ly~idp~G~~-~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~  158 (198)
T 1ryp_K           81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKK-NKPELYQIDYLGTK-VELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL  158 (198)
T ss_dssp             HHHHHHHHHHHTTSSSCCCEEEEEEEEETTT-TEEEEEEECTTCCE-EECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCceEEEEEEEEeCCC-CCcEEEEECCCCCE-EECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence            999999998863 3 59999999999997 4 58999999999998 689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +++++||..+.++|..++++++|++|+++|++..
T Consensus       159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~  192 (198)
T 1ryp_K          159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV  192 (198)
T ss_dssp             HHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEe
Confidence            9999999999999999999999999999997754

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=3.1e-47  Score=300.91  Aligned_cols=186  Identities=19%  Similarity=0.254  Sum_probs=179.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|.+||+|++|+||||++  ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~  157 (204)
T 1iru_L           81 KLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEGNR-ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR  157 (204)
T ss_dssp             HHHHHHHHTTTTSCCCBEEEEEEECSS--SEEEEEEESSSCE-EECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeeEEEEEEEEeCC--CCEEEEECCCCcE-EEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            999999999887899999999999974  8999999999999 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||..+.++|..++++++|++|+++|++.
T Consensus       158 ~al~~~~~rd~~s~~~i~v~vi~~~g~~~  186 (204)
T 1iru_L          158 RAIYQATYRDAYSGGAVNLYHVREDGWIR  186 (204)
T ss_dssp             HHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred             HHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence            99999999999899999999999999654

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=1.6e-47  Score=313.90  Aligned_cols=200  Identities=19%  Similarity=0.290  Sum_probs=186.9

Q ss_pred             cccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-----h
Q psy15275          3 IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-----K   77 (205)
Q Consensus         3 ~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~   77 (205)
                      |.. +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++     +
T Consensus        37 av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~  115 (266)
T 1g0u_M           37 PIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD  115 (266)
T ss_dssp             CCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred             Ccc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhh
Confidence            444 7999999999999999999999999988899999999999999999999999999999999999999998     8


Q ss_pred             cCCcCCHHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275         78 ENRKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE  155 (205)
Q Consensus        78 ~~~~~~~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  155 (205)
                      ++++++++.+++++++++|.+|  ++||+|++||||||++ ++|+||.+||+|++ .++++.++|+|+++++++||+.|+
T Consensus       116 ~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~  193 (266)
T 1g0u_M          116 AEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQFLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVD  193 (266)
T ss_dssp             TTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT-SCEEEEEEETTCCE-ECCSEEECTHHHHTHHHHHTTTCS
T ss_pred             cCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCC-CCEEEEEECCCCCE-EeCCEEEEccCHHHHHHHHHHhhc
Confidence            9999999999999999999876  7899999999999985 58999999999998 689999999999999999999999


Q ss_pred             C-----CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEEEE---Eeecc-CC
Q psy15275        156 P-----NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVTVR---HVKTR-MD  205 (205)
Q Consensus       156 ~-----~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~~~---~~~~~-~~  205 (205)
                      +     +|+++||++++++||..+.++|..++++++|++|+++ |+++.   +++.. |+
T Consensus       194 ~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~  253 (266)
T 1g0u_M          194 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWD  253 (266)
T ss_dssp             SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCG
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhh
Confidence            9     9999999999999999999999999999999999999 87664   34444 53

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=3.5e-47  Score=302.34  Aligned_cols=187  Identities=19%  Similarity=0.252  Sum_probs=179.6

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            68999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|..||++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~  158 (212)
T 1ryp_L           81 KILSNLVYQYKGAGLSMGTMICGYTRK-EGPTIYYVDSDGTR-LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGK  158 (212)
T ss_dssp             HHHHHHHHHTTTSCCCBEEEEEEEETT-TEEEEEEEETTCCE-EECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCceEEEEEEEEeCC-CCCEEEEEcCCcee-EecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence            999999998887799999999999965 58999999999999 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||..+.++|..+++++++++|+++|++.
T Consensus       159 ~al~~~~~rd~~s~~~i~v~vi~~~g~~~  187 (212)
T 1ryp_L          159 RSILAAAHRDAYSGGSVNLYHVTEDGWIY  187 (212)
T ss_dssp             HHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred             HHHHHHHHhccccCCceEEEEEcCCceEE
Confidence            99999999999999999999999998654

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=2.8e-47  Score=314.69  Aligned_cols=192  Identities=19%  Similarity=0.256  Sum_probs=181.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      -.+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv  151 (287)
T 3nzj_K           72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISV  151 (287)
T ss_dssp             ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      +.+++++++++|.+|.+||++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus       152 ~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~-~gp~Ly~iDp~G~~-~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi  229 (287)
T 3nzj_K          152 AAASKILSNLVYQYKGAGLSMGTMICGYTRK-EGPTIYYVDSDGTR-LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDAL  229 (287)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCEEEEEEEEETT-TEEEEEEEETTCCE-EECSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCCEEEEECCCceE-EEcCeEEEecchHHHHHHHHHhhcCCCCHHHHH
Confidence            9999999999999887799999999999975 58999999999999 589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +++++||..+.+||..++++++|++|+++|++..
T Consensus       230 ~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l  263 (287)
T 3nzj_K          230 YLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH  263 (287)
T ss_dssp             HHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEe
Confidence            9999999999999999999999999999996654

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=5.2e-47  Score=303.33  Aligned_cols=193  Identities=21%  Similarity=0.240  Sum_probs=182.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            68999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++.+|.++ +||++++|+||||++  ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~  156 (222)
T 1ryp_I           81 QMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS  156 (222)
T ss_dssp             HHHHHHHHHTT-TCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhhcC-CCCCeeEEEEEEeCC--CCEEEEECCCCCE-EecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence            99999988764 699999999999974  7999999999998 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCc-EEEE---EeeccCC
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDK-VTVR---HVKTRMD  205 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g-~~~~---~~~~~~~  205 (205)
                      +||+.+.++|..++++++|++|+++| ++..   .++.+|+
T Consensus       157 ~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~  197 (222)
T 1ryp_I          157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE  197 (222)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCC
T ss_pred             HHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCccc
Confidence            99999999999999999999999999 7754   3555664

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=4.8e-47  Score=309.71  Aligned_cols=196  Identities=21%  Similarity=0.245  Sum_probs=180.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus        26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v  105 (261)
T 3nzj_H           26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRV  105 (261)
T ss_dssp             ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred             cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      +.+++++++.+|.++ +||++++|+||||++  ||+||++||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus       106 ~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~--Gp~Ly~iDp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~  181 (261)
T 3nzj_H          106 VSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI  181 (261)
T ss_dssp             HHHHHHHHHHHHHTT-TCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhc-CcccEEEEEEEEeCC--CCEEEEECCCccE-EecCeEEeccchHHHHHHHHHHhccCCCHHHHH
Confidence            999999999988763 599999999999984  7999999999999 689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCc-EEEE---EeeccC
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDK-VTVR---HVKTRM  204 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g-~~~~---~~~~~~  204 (205)
                      +++.+||..+.++|..++++++|++|+++| ++..   .+|.+|
T Consensus       182 ~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~  225 (261)
T 3nzj_H          182 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR  225 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcc
Confidence            999999999999999999999999999999 4332   345555

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=3e-47  Score=300.37  Aligned_cols=190  Identities=18%  Similarity=0.274  Sum_probs=179.0

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      ++|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~   80 (201)
T 1iru_K            1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA   80 (201)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            58999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-Hhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHH
Q psy15275         88 LAMISNML-YERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFE  165 (205)
Q Consensus        88 a~~i~~~~-~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~  165 (205)
                      ++++++.+ |..| .+||++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||++
T Consensus        81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~-~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~  158 (201)
T 1iru_K           81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEH-EGPALYYMDYLAAL-AKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE  158 (201)
T ss_dssp             HHHHHHHHHHHHTSSSCCCEEEEEEEEETT-TEEEEEEECTTCCE-EECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccEEEEEEEEeCC-CCeEEEEECCCcCe-EECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence            99998765 5433 4699999999999985 58999999999998 6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEE
Q psy15275        166 TIAQALVNACERNAVSGWGAVVYIIEQDKVTVRH  199 (205)
Q Consensus       166 l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~  199 (205)
                      ++++||+.+.++|..+++++++++|+++|+++..
T Consensus       159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~  192 (201)
T 1iru_K          159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD  192 (201)
T ss_dssp             HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred             HHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence            9999999999999999999999999999987653

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=8.7e-47  Score=297.25  Aligned_cols=190  Identities=19%  Similarity=0.302  Sum_probs=179.1

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA   80 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            69999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+| +||++++|+||||++ ++|+||.  |+|++....+++++|+|+++++++||+.|+++|+++||++++.
T Consensus        81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~-~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~  156 (199)
T 3unf_N           81 NVVKNISYKYR-EDLLAHLIVAGWDQR-EGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTT  156 (199)
T ss_dssp             HHHHHHHHHTT-TTCCCCEEEEEEETT-TEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCceEEEEEEEEeCC-CCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            99999999765 599999999999985 5899999  9999744556777899999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      +||..+.++|..++++++|++|+++|++++.++.
T Consensus       157 ~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~  190 (199)
T 3unf_N          157 NAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG  190 (199)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred             HHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence            9999999999999999999999999999887764

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=1.7e-47  Score=309.99  Aligned_cols=185  Identities=18%  Similarity=0.215  Sum_probs=176.3

Q ss_pred             cc-CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          6 YN-GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         6 ~~-g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus        27 ~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v  105 (243)
T 1ryp_A           27 NQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPC  105 (243)
T ss_dssp             TTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             hcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46 9999999999999999999998 677778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC----
Q psy15275         85 KVLLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP----  156 (205)
Q Consensus        85 ~~la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~----  156 (205)
                      +.+++++++++  |.+|  +|||+|++||||||++ ++|+||++||+|++ .++++.|+|+|++.++++||+.|++    
T Consensus       106 ~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~-~gp~Ly~~dp~G~~-~~~~~~a~G~gs~~a~~~Le~~~~~~~~~  183 (243)
T 1ryp_A          106 DVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEE-LGPSIYKTDPAGYY-VGYKATATGPKQQEITTNLENHFKKSKID  183 (243)
T ss_dssp             HHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHhccCCccccceEEEEEEEcCC-CCcEEEEEcCCCCE-EEEEEEEECCCcHHHHHHHHHHhhhcccc
Confidence            99999999998  7766  7999999999999975 58999999999999 5899999999999999999999998    


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        157 ---NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       157 ---~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                         +|+++||++++++||..+.++| .++++++|++|+++|
T Consensus       184 ~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g  223 (243)
T 1ryp_A          184 HINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK  223 (243)
T ss_dssp             SCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE
T ss_pred             cccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC
Confidence               9999999999999999999999 679999999999999

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=1e-46  Score=306.02  Aligned_cols=192  Identities=16%  Similarity=0.244  Sum_probs=180.0

Q ss_pred             cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275          7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV   86 (205)
Q Consensus         7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
                      +|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|..+|++.|.++++.+++.|+++++++++++.
T Consensus        35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~  113 (246)
T 1iru_A           35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM  113 (246)
T ss_dssp             TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred             CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            49999999999999999999998 56777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCCH
Q psy15275         87 LLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLEP  160 (205)
Q Consensus        87 la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~~  160 (205)
                      +++++++++  |.+|  +|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|++  +|++
T Consensus       114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~  191 (246)
T 1iru_A          114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEE-QGPQVYKCDPAGYY-CGFKATAAGVKQTESTSFLEKKVKKKFDWTF  191 (246)
T ss_dssp             HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCC-CCeEEEEEcCCeeE-EEeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence            999999874  5554  7899999999999985 58999999999999 5899999999999999999999999  9999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      +||++++++||..+.++| .++++++|++|+++|.+++.++.
T Consensus       192 eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~  232 (246)
T 1iru_A          192 EQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTE  232 (246)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCH
T ss_pred             HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCH
Confidence            999999999999999999 78999999999999987776653

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=2.2e-46  Score=301.88  Aligned_cols=193  Identities=20%  Similarity=0.230  Sum_probs=181.8

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            68999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++.+|.++ +||++++|+||||++  ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||++++.
T Consensus        81 ~~l~~~l~~~~-~~~~v~llvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~  156 (234)
T 1iru_I           81 RMLKQMLFRYR-GYIGAALVLGGVDVT--GPHLYSIYPHGST-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS  156 (234)
T ss_dssp             HHHHHHHHHTT-TCSCEEEEEEEECSS--CEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHH
T ss_pred             HHHHHHHHhcC-CCCceeEEEEEEcCC--CCEEEEECCCCCE-EecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            99999988764 599999999999974  7999999999998 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD  205 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~  205 (205)
                      +||..+.++|..++++++|++|+++|++..   .+|.+|+
T Consensus       157 ~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~  196 (234)
T 1iru_I          157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKG  196 (234)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCC
T ss_pred             HHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCcccc
Confidence            999999999999999999999999998744   3566664

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=1.3e-46  Score=304.99  Aligned_cols=195  Identities=13%  Similarity=0.191  Sum_probs=180.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  107 (244)
T 1ryp_C           28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV  107 (244)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            35799999999999999999999999987768899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++++++++.+    ++|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus       108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~  185 (244)
T 1ryp_C          108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDR-YGYQLYTSNPSGNY-TGWKAISVGANTSAAQTLLQMDYKDDMKV  185 (244)
T ss_dssp             HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETT-TEEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCC-CCCEEEEECCCccE-EeeeEEEECCCcHHHHHHHHHhhhcCCCH
Confidence            99999999998543    37899999999999954 58999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEe--CCcEE--EEEee
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIE--QDKVT--VRHVK  201 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~--~~g~~--~~~~~  201 (205)
                      +||++++++||..+.++|..++++++|++|+  ++|..  ++.++
T Consensus       186 eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~  230 (244)
T 1ryp_C          186 DDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFK  230 (244)
T ss_dssp             HHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECC
T ss_pred             HHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECC
Confidence            9999999999999999965578999999999  99864  55554

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=2.2e-46  Score=301.71  Aligned_cols=190  Identities=16%  Similarity=0.173  Sum_probs=177.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.+++. +..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~~-~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  109 (233)
T 1yar_A           31 VKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI  109 (233)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEECCEEEEEEeccCCccc-ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3579999999999999999999999974 667899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++++++++|..+    .|||+|++|+||||++  +|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus       110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~--gp~Ly~id~~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~s~  186 (233)
T 1yar_A          110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLFDCDPAGTI-NEYKATAIGSGKDAVVSFLEREYKENLPE  186 (233)
T ss_dssp             HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS--CEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCC--CCEEEEECCCCCE-EeeeEEEEcCCcHHHHHHHHHHhccCCCH
Confidence            999999999998643    6899999999999973  8999999999998 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEe
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHV  200 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~  200 (205)
                      +||++++++||..+.++|. ++++++|++|+++|. ++.+
T Consensus       187 eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~-~~~~  224 (233)
T 1yar_A          187 KEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK-YRIY  224 (233)
T ss_dssp             HHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC-CEEC
T ss_pred             HHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC-EEEC
Confidence            9999999999999999998 689999999999984 4443

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=2e-46  Score=306.66  Aligned_cols=194  Identities=13%  Similarity=0.152  Sum_probs=182.1

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++...+.+||++|++|++|+++|..+|++.|.++++.+++.|++.+++++++
T Consensus        28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  107 (261)
T 1iru_C           28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC  107 (261)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            35899999999999999999999999998877789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC-CCC
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP-NLE  159 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-~~~  159 (205)
                      +.+++++++++|.++    +|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|++ +|+
T Consensus       108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~ms  185 (261)
T 1iru_C          108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKH-YGFQLYQSDPSGNY-GGWKATCIGNNSAAAVSMLKQDYKEGEMT  185 (261)
T ss_dssp             HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETT-TEEEEEEEETTTEE-EECSEEEESTTTTHHHHHHHHHCCTTCCC
T ss_pred             HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCC-CCcEEEEECCCceE-EeeeeEEeCcccHHHHHHHHHhhccCCCC
Confidence            999999999998753    7899999999999975 58999999999999 5899999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE--EEEe
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT--VRHV  200 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~--~~~~  200 (205)
                      ++||++++++||..+.++|..++++++|++|+++|..  ++.+
T Consensus       186 ~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l  228 (261)
T 1iru_C          186 LKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVL  228 (261)
T ss_dssp             HHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEEC
Confidence            9999999999999999999999999999999999853  4444

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=3.5e-46  Score=300.58  Aligned_cols=187  Identities=17%  Similarity=0.185  Sum_probs=175.2

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  106 (233)
T 1iru_B           28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT  106 (233)
T ss_dssp             HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3579999999999999999999998 466778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++++++++.  ++  +|||+|++|+||||.  ++|+||.+||+|++ .++++.++|+|+++++++||+.|+++|++
T Consensus       107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~--~gp~Ly~id~~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~ms~  183 (233)
T 1iru_B          107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE--GRPYLFQSDPSGAY-FAWKATAMGKNYVNGKTFLEKRYNEDLEL  183 (233)
T ss_dssp             HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS--SSEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC--CCCeEEEECCCCCE-EEeeEEEECCCCHHHHHHHHHHhccCCCH
Confidence            9999999999854  33  789999999999995  48999999999999 58999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT  196 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~  196 (205)
                      +||++++++||..+.++| .++++++|++|+++|++
T Consensus       184 eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~  218 (233)
T 1iru_B          184 EDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFR  218 (233)
T ss_dssp             HHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEE
Confidence            999999999999999999 66899999999999944

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=3.8e-46  Score=301.93  Aligned_cols=192  Identities=15%  Similarity=0.179  Sum_probs=178.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++ .++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus        23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  101 (242)
T 1ryp_E           23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV  101 (242)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            357999999999999999999999999876 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC
Q psy15275         85 KVLLAMISNMLYERR----------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW  154 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~  154 (205)
                      +.+++++++++|.++          .|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|
T Consensus       102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~  179 (242)
T 1ryp_E          102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD-DGYQLFHAEPSGTF-YRYNAKAIGSGSEGAQAELLNEW  179 (242)
T ss_dssp             HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCC-CCCEEEEECCCCCE-eccCEEEECCCCHHHHHHHHHhh
Confidence            999999999887631          6799999999999965 58999999999999 58899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      +++|+++||++++++||..+.++ ..++++++|++|+++|. ++.++
T Consensus       180 ~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~~  224 (242)
T 1ryp_E          180 HSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG-FKIYD  224 (242)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE-EEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC-eEECC
Confidence            99999999999999999999999 66789999999999997 55444

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=1.9e-45  Score=297.65  Aligned_cols=192  Identities=18%  Similarity=0.313  Sum_probs=176.9

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  104 (241)
T 1ryp_D           25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV  104 (241)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            35799999999999999999999999998766799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC---CCC
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW---EPN  157 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~---~~~  157 (205)
                      +.+++++++++|.++    +|||+|++|+||||+++++|+||.+||+|++ .++++.|+|+|+++++++||+.|   +++
T Consensus       105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~~  183 (241)
T 1ryp_D          105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY-SSWSAQTIGRNSKTVREFLEKNYDRKEPP  183 (241)
T ss_dssp             HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHTTCCTTSCC
T ss_pred             HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCE-EEeeeEEECCCcHHHHHHHHHhhhcccCC
Confidence            999999999998742    5899999999999973248999999999999 58899999999999999999999   999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      |+++||++++++||..+.+   .++++++|++|+++|. ++.++
T Consensus       184 ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~-~~~l~  223 (241)
T 1ryp_D          184 ATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSD-IVALS  223 (241)
T ss_dssp             CSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTE-EEECC
T ss_pred             CCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCc-EEECC
Confidence            9999999999999999986   6789999999999973 44443

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=8.9e-46  Score=299.60  Aligned_cols=191  Identities=17%  Similarity=0.236  Sum_probs=177.9

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|..+ .++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  109 (241)
T 1iru_E           31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV  109 (241)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            457999999999999999999999999877 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--cc-------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275         85 KVLLAMISNMLYE--RR-------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE  155 (205)
Q Consensus        85 ~~la~~i~~~~~~--~r-------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  155 (205)
                      +.++++++++++.  ++       .|||+|++|+||||.  ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+
T Consensus       110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~  186 (241)
T 1iru_E          110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE--KGPQLFHMDPSGTF-VQCDARAIGSASEGAQSSLQELYH  186 (241)
T ss_dssp             HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET--TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC--CCCEEEEECCCCcE-EecceEEECCCcHHHHHHHHHHhc
Confidence            9999999998843  33       579999999999994  58999999999999 689999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      ++|+++||++++++||..+.++ ..++++++|++|+++|. ++.++
T Consensus       187 ~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~l~  230 (241)
T 1iru_E          187 KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN-FHMFT  230 (241)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC-CEECC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC-eEECC
Confidence            9999999999999999999999 66799999999999987 55544

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=5.2e-45  Score=294.05  Aligned_cols=187  Identities=18%  Similarity=0.223  Sum_probs=175.7

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      +|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence            68999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc---CCcceeeeEEEEecCCCCC-----cEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcCCCCC
Q psy15275         89 AMISNMLYERR---FGPYFVEPMVVGLDPETAE-----PIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLWEPNL  158 (205)
Q Consensus        89 ~~i~~~~~~~r---~~P~~v~~iv~G~d~~~~~-----p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~  158 (205)
                      +.+++++|.++   +|||+|++|+||||++ ++     |+||.+||+|++ .++  ++.|+|+|+++++++||+.|+++|
T Consensus        81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~-~g~~~~~p~Ly~idp~G~~-~~~~~~~~aiGsgs~~a~~~Le~~~~~~m  158 (235)
T 1q5q_H           81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLD-ADDESRAGRIVSYDVVGGR-YEERAGYHAVGSGSLFAKSALKKIYSPDS  158 (235)
T ss_dssp             HHHHHHHHTTHHHHTTTCCEEEEEEEECTT-CSSTTSCEEEEEECTTSCE-EECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHhhhcccceEEEEEEEECC-CCccCCCCEEEEECCCCce-EEeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence            99999998754   7899999999999985 46     999999999998 477  899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCc--E-----EEEEEeCCcEEE
Q psy15275        159 EPDDLFETIAQALVNACERNAVSGWG--A-----VVYIIEQDKVTV  197 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~~~g~~~  197 (205)
                      +++||++++++||..+.++|..+++.  +     +|++|+++|++.
T Consensus       159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~  204 (235)
T 1q5q_H          159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH  204 (235)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence            99999999999999999999987653  2     999999998654

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=8.6e-46  Score=303.05  Aligned_cols=191  Identities=20%  Similarity=0.311  Sum_probs=177.8

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      .+|+|+|||+++||||||+|+|.+++ ++..++.+|||+|++|++|+++|..+|++.|+++++.+++.|++.++++++++
T Consensus        36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~  114 (264)
T 3h4p_A           36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIE  114 (264)
T ss_dssp             HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred             hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Confidence            58999999999999999999999987 46678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275         86 VLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD  161 (205)
Q Consensus        86 ~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  161 (205)
                      .++++++++++.+  +  +|||+|++||||||+  ++|+||.+||+|++ .++++.|+|+|+++++++|++.|+++|+++
T Consensus       115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~--~gp~Ly~iDp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e  191 (264)
T 3h4p_A          115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK--NEARLFETDPSGAL-IEYKATAIGSGRPVVMELLEKEYRDDITLD  191 (264)
T ss_dssp             HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET--TEEEEEEECTTCCC-EEESEEEESTTHHHHTTTHHHHCCTTCCSH
T ss_pred             HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC--CcCEEEEECCCceE-EecCeEEECCCHHHHHHHHHHhccCCCCHH
Confidence            9999999988653  2  689999999999997  48999999999998 589999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      ||++++++||..+.++  .++++++|++|++++..++.++.
T Consensus       192 ea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~  230 (264)
T 3h4p_A          192 EGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV  230 (264)
T ss_dssp             HHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred             HHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence            9999999999999987  68899999999998777776654

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=9e-46  Score=301.67  Aligned_cols=186  Identities=12%  Similarity=0.086  Sum_probs=175.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++ .++.+|||+|++|++|+++|..+|++.|.++++.+++.|++++++++++
T Consensus        30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  108 (254)
T 1iru_G           30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL  108 (254)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            457999999999999999999999999887 4789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++++++++|.++    +|||+|++||||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus       109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~  186 (254)
T 1iru_G          109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVN-DGAQLYMIDPSGVS-YGYWGCAIGKARQAAKTEIEKLQMKEMTC  186 (254)
T ss_dssp             HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETT-TEEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHTTSCGGGCCH
T ss_pred             HHHHHHHHHHHHHhccccccccceEEEEEEEEeCC-CCcEEEEEcCCCCE-EeeeeEEecCccHHHHHHHHHhccCCCCH
Confidence            999999999997653    6899999999999954 58999999999999 58899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQD  193 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~  193 (205)
                      +||+++++++|..+.++|..++.+++|++|+++
T Consensus       187 eea~~la~~al~~~~~~~~~~~~~iev~vi~~~  219 (254)
T 1iru_G          187 RDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL  219 (254)
T ss_dssp             HHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence            999999999999999888777889999999987

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=6.4e-45  Score=301.52  Aligned_cols=191  Identities=18%  Similarity=0.221  Sum_probs=179.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.|.++++.+++.|++.+++++++
T Consensus        62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv  141 (294)
T 1q5r_H           62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF  141 (294)
T ss_dssp             SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc---CCcceeeeEEEEecCCCCC-----cEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcC
Q psy15275         85 KVLLAMISNMLYERR---FGPYFVEPMVVGLDPETAE-----PIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLW  154 (205)
Q Consensus        85 ~~la~~i~~~~~~~r---~~P~~v~~iv~G~d~~~~~-----p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~  154 (205)
                      +.+++.|++++|.++   ++||+|++||||||++ ++     |+||++||+|++ .++  ++.|+|+|+++++++||+.|
T Consensus       142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~-~g~~~~~p~Ly~iDp~G~~-~e~~~~~~AiGsgs~~a~~~Le~~y  219 (294)
T 1q5r_H          142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLD-ADDESRAGRIVSYDVVGGR-YEERAGYHAVGSGSLFAKSALKKIY  219 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTT-CSCTTSCEEEEEECSSSCE-EECCSSEEEESTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCC-CCcCCCCCEEEEECCCCeE-EecCCCeEEEecCcHHHHHHHHHhc
Confidence            999999999998754   6899999999999985 46     999999999998 477  89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCc--E-----EEEEEeCCcEEE
Q psy15275        155 EPNLEPDDLFETIAQALVNACERNAVSGWG--A-----VVYIIEQDKVTV  197 (205)
Q Consensus       155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~~~g~~~  197 (205)
                      +++|+++||++++++||..+.++|..+++.  +     +|++|+++|++.
T Consensus       220 ~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~  269 (294)
T 1q5r_H          220 SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH  269 (294)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence            999999999999999999999999987654  5     999999999654

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=5.8e-45  Score=295.30  Aligned_cols=190  Identities=14%  Similarity=0.102  Sum_probs=176.8

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|++.++|.++.. ..+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  105 (244)
T 1ryp_G           27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI  105 (244)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            35799999999999999999999999987654 45999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc---CCCC
Q psy15275         85 KVLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL---WEPN  157 (205)
Q Consensus        85 ~~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~  157 (205)
                      +.++++++++++.+  +  +|||++++|+||||++  +|+||.+||+|++ .++++.|+|+|+++++++||+.   |+++
T Consensus       106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~~  182 (244)
T 1ryp_G          106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLYMLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEG  182 (244)
T ss_dssp             HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCC--cCEEEEECCCCCE-EEeeEEEECCChHHHHHHHHHhHhhcCCC
Confidence            99999999998553  2  6899999999999974  8999999999999 5889999999999999999997   9999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeC---CcEEEE
Q psy15275        158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQ---DKVTVR  198 (205)
Q Consensus       158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~---~g~~~~  198 (205)
                      |+++||++++++||..+.++|..++.+++|++|++   +|.+..
T Consensus       183 ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~  226 (244)
T 1ryp_G          183 LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF  226 (244)
T ss_dssp             CCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence            99999999999999999999999899999999998   776643

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=2.7e-45  Score=302.92  Aligned_cols=194  Identities=14%  Similarity=0.112  Sum_probs=179.1

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++. ...+|||+|++|++|+++|+.+|++.|.++++.+++.|++.+++++++
T Consensus        31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v  109 (288)
T 3nzj_F           31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI  109 (288)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCH
Confidence            3589999999999999999999999998765 477999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc---CCCC
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL---WEPN  157 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~  157 (205)
                      +.+++++++++|.+    ++|||+|++||||||++  ||+||++||+|++ .+++++|+|+|+++++++||+.   |+++
T Consensus       110 ~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~--Gp~Ly~iDp~G~~-~~~~~~aiGsgs~~a~~~Lek~~~~~~~~  186 (288)
T 3nzj_F          110 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLYMLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEG  186 (288)
T ss_dssp             HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC--CCEEEEECCCCCE-EEcCEEEEcCcHHHHHHHHHHhccccCCC
Confidence            99999999998654    27899999999999984  7999999999999 5899999999999999999999   9999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeC--CcEEEEEeec
Q psy15275        158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQ--DKVTVRHVKT  202 (205)
Q Consensus       158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~--~g~~~~~~~~  202 (205)
                      |+++||++++++||..+.+++..++.+++|++|++  .+..++.+|-
T Consensus       187 ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~  233 (288)
T 3nzj_F          187 LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKG  233 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCH
Confidence            99999999999999999999988888999999999  4545555553

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=3.9e-45  Score=296.98  Aligned_cols=184  Identities=15%  Similarity=0.248  Sum_probs=172.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|. +..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus        26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  104 (248)
T 1iru_D           26 VKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTV  104 (248)
T ss_dssp             HHTSCCEEEECCSSEEEEEECCCCCCSS-SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEeecccccC-ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3579999999999999999999999985 567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC--
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL--  158 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~--  158 (205)
                      +.++++++++++.++    .|||+|++||||||++ ++|+||.+||+|++ .++++.++|+|+++++++||+.|+++|  
T Consensus       105 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~m~~  182 (248)
T 1iru_D          105 EYITRYIASLKQRYTQSNGRRPFGISALIVGFDFD-GTPRLYQTDPSGTY-HAWKANAIGRGAKSVREFLEKNYTDEAIE  182 (248)
T ss_dssp             HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSS-SCEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHTTTCCSSTTC
T ss_pred             HHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCC-CCcEEEEEcCCCcE-EEeeEEEECCCcHHHHHHHHHhhcccccC
Confidence            999999999986642    6899999999999965 58999999999998 689999999999999999999999999  


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        159 EPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      +++||++++++||..+.+   .++++++|++|+++|
T Consensus       183 s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g  215 (248)
T 1iru_D          183 TDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ  215 (248)
T ss_dssp             SHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS
T ss_pred             CHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC
Confidence            999999999999998886   468899999999998

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=3.3e-44  Score=291.20  Aligned_cols=183  Identities=19%  Similarity=0.257  Sum_probs=171.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.+.+. +..++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  109 (246)
T 1j2p_A           31 VKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV  109 (246)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             HHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            3579999999999999999999999875 447899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.++++++++++.  ++  .|||++++|+|||| +  +|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus       110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~  185 (246)
T 1j2p_A          110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-E--VPKLYETDPSGAL-LEYKATAIGMGRMAVTEFFEKEYRDDLSF  185 (246)
T ss_dssp             HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-S--SEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-C--CCEEEEECCCceE-EeeeEEEECCCcHHHHHHHHHHhccCCCH
Confidence            9999999999854  33  68999999999999 4  8999999999999 58899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEe-CC
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIE-QD  193 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~-~~  193 (205)
                      +||++++++||..+.++ ..++++++|++|+ ++
T Consensus       186 eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~  218 (246)
T 1j2p_A          186 DDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDD  218 (246)
T ss_dssp             HHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCC
Confidence            99999999999999998 7789999999999 64

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=1.3e-44  Score=299.42  Aligned_cols=192  Identities=18%  Similarity=0.194  Sum_probs=160.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      ..+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++.++++
T Consensus        54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v  133 (291)
T 2jay_A           54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF  133 (291)
T ss_dssp             ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence            56899999999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc---CCcceeeeEEEEecCCCCC-----cEEEEEcCCCccc-cCCcceeecCchhhhhhhhhhcCC
Q psy15275         85 KVLLAMISNMLYERR---FGPYFVEPMVVGLDPETAE-----PIIGNMDLIGCVN-QPSDFVVGGPCSDQLYGMCETLWE  155 (205)
Q Consensus        85 ~~la~~i~~~~~~~r---~~P~~v~~iv~G~d~~~~~-----p~ly~id~~G~~~-~~~~~~a~G~g~~~~~~~Le~~~~  155 (205)
                      +.+++.+++++|.++   +|||+|++|+||||++ ++     |+||++||+|++. .+++|.|+|+|+++++++||+.|+
T Consensus       134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~-g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~  212 (291)
T 2jay_A          134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIH-ASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS  212 (291)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTT-CSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCC-CCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC
Confidence            999999999998865   5799999999999985 45     9999999999983 388999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCc-------EEEEEEeCCcEEE
Q psy15275        156 PNLEPDDLFETIAQALVNACERNAVSGWG-------AVVYIIEQDKVTV  197 (205)
Q Consensus       156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~-------i~i~ii~~~g~~~  197 (205)
                      ++|+++||++++++||..+.++|..+++.       ++|++|+++|++.
T Consensus       213 ~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~  261 (291)
T 2jay_A          213 QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD  261 (291)
T ss_dssp             GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence            99999999999999999999999987753       1699999998654

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=1.2e-44  Score=291.68  Aligned_cols=183  Identities=20%  Similarity=0.226  Sum_probs=170.8

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      ++|+|+|||+++||||||+|+|.+.|..   ++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++
T Consensus        29 ~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  105 (233)
T 1ryp_F           29 KQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE  105 (233)
T ss_dssp             HTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            5799999999999999999999999853   5889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CC-
Q psy15275         86 VLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NL-  158 (205)
Q Consensus        86 ~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~-  158 (205)
                      .++++++++++.+    +.|||+|++|+||||++  ||+||.+||+|++ .++++.|+|+|+++++++||+.|++  +| 
T Consensus       106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~  182 (233)
T 1ryp_F          106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS--GAHLLEFQPSGNV-TELYGTAIGARSQGAKTYLERTLDTFIKID  182 (233)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC--cCEEEEECCCCCe-eeeeEEEECCCcHHHHHHHHHHhccccccC
Confidence            9999999988542    26799999999999974  7999999999999 5889999999999999999999998  99 


Q ss_pred             -CHHHHHHHHHHHHHHHHhhc-cccCCcEEEEEEeCCcE
Q psy15275        159 -EPDDLFETIAQALVNACERN-AVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       159 -~~~ea~~l~~~~l~~~~~~d-~~~~~~i~i~ii~~~g~  195 (205)
                       +++||+++++++|..+. +| ..++++++|++|++++.
T Consensus       183 ~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~  220 (233)
T 1ryp_F          183 GNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP  220 (233)
T ss_dssp             SCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC
Confidence             99999999999999999 77 56899999999999954

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=1.3e-44  Score=296.06  Aligned_cols=183  Identities=17%  Similarity=0.153  Sum_probs=172.1

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      ++|+|+|||+++||||||+|+|.++|..   ++.+||++|+++++|+++|..+|++.|.++++.+++.|++.++++++++
T Consensus        30 ~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~  106 (263)
T 1iru_F           30 KQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS  106 (263)
T ss_dssp             HHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            5799999999999999999999999863   5889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCC
Q psy15275         86 VLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLE  159 (205)
Q Consensus        86 ~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~  159 (205)
                      .+++++++++|.+    ..|||+|++||||||++  +|+||.+||+|++ .++++.|+|+|+++++++||+.|++  +|+
T Consensus       107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms  183 (263)
T 1iru_F          107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM--GPHIFQTCPSANY-FDCRAMSIGARSQSARTYLERHMSEFMECN  183 (263)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT--EEEEEEECSSSCE-EEESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhcccccccceEEEEEEEEcCC--CCEEEEECCCCCE-EEeeEEEcCcccHHHHHHHHHHhcccCCCC
Confidence            9999999998743    26899999999999974  8999999999999 5889999999999999999999998  999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-cccCCcEEEEEEeCCc
Q psy15275        160 PDDLFETIAQALVNACERN-AVSGWGAVVYIIEQDK  194 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d-~~~~~~i~i~ii~~~g  194 (205)
                      ++||++++++||..+.++| ..++++++|++|++++
T Consensus       184 ~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~  219 (263)
T 1iru_F          184 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL  219 (263)
T ss_dssp             HHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC
Confidence            9999999999999999999 4789999999999995

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=5.3e-44  Score=289.69  Aligned_cols=185  Identities=16%  Similarity=0.203  Sum_probs=163.8

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCCH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMSP   84 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   84 (205)
                      .+|+|+|||+++||||||+|+|        .++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ .++++
T Consensus        25 ~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v   96 (248)
T 3mi0_A           25 ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG   96 (248)
T ss_dssp             HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence            5799999999999999999998        35789999999999999999999999999999999999999999 89999


Q ss_pred             HHHHHHHHHH---HHhccCCcceeeeEEEEecC--CCCCcEEEEEcCCCccccC-CcceeecCchhhhhhhhhhcCCCCC
Q psy15275         85 KVLLAMISNM---LYERRFGPYFVEPMVVGLDP--ETAEPIIGNMDLIGCVNQP-SDFVVGGPCSDQLYGMCETLWEPNL  158 (205)
Q Consensus        85 ~~la~~i~~~---~~~~r~~P~~v~~iv~G~d~--~~~~p~ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~  158 (205)
                      +.+++++++.   .|++++|||+|++||||||+  +.++|+||++||+|++ .. +++.|+|+|+++++++||++|+++|
T Consensus        97 ~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~-~~e~~~~a~Gsgs~~a~~~Le~~y~~~m  175 (248)
T 3mi0_A           97 RQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSI-ADEPHFVVMGGTTEPIANALKESYAENA  175 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCE-EEESSEEEESSCHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEE-eecccEEEECccHHHHHHHHHhhcCCCC
Confidence            9999999954   35556889999999999997  1258999999999998 64 9999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH-------hhccccCCcEEEEEEeCCc--EEEEEe
Q psy15275        159 EPDDLFETIAQALVNAC-------ERNAVSGWGAVVYIIEQDK--VTVRHV  200 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~-------~~d~~~~~~i~i~ii~~~g--~~~~~~  200 (205)
                      +++||++++++||..+.       +++ .++++++|++|+++|  .+++.+
T Consensus       176 t~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l  225 (248)
T 3mi0_A          176 SLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRI  225 (248)
T ss_dssp             CHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEEC
T ss_pred             CHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEEC
Confidence            99999999999999998       554 567899999999997  344444

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=9.3e-44  Score=289.20  Aligned_cols=186  Identities=19%  Similarity=0.222  Sum_probs=171.9

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhh-hhhhcCCcCC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNL-YELKENRKMS   83 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~   83 (205)
                      ..+|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|..+|++.+.++++.+++. |++.++.+++
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~  106 (250)
T 1ryp_B           28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP  106 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred             HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3579999999999999999999998 6677789999999999999999999999999999999999998 9989999999


Q ss_pred             HHHHHHHHHHHHHh----ccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCC
Q psy15275         84 PKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLE  159 (205)
Q Consensus        84 ~~~la~~i~~~~~~----~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~  159 (205)
                      ++.+++.++++++.    .++|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+
T Consensus       107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms  184 (250)
T 1ryp_B          107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEF-NGFSLYQVDPSGSY-FPWKATAIGKGSVAAKTFLEKRWNDELE  184 (250)
T ss_dssp             HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCC-CCcEEEEECCCCCE-EeeceeEecCccHHHHHHHHHHhccCCC
Confidence            99998888887644    236899999999999985 58999999999999 6899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      ++||++++++||..+.+++. ++++++|++|++++
T Consensus       185 ~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~  218 (250)
T 1ryp_B          185 LEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN  218 (250)
T ss_dssp             HHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred             HHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence            99999999999999998865 68999999999973

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=6.7e-43  Score=285.32  Aligned_cols=179  Identities=15%  Similarity=0.224  Sum_probs=163.3

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCCH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMSP   84 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   84 (205)
                      .+|+|+|||+++||||||+|+|        +++.+|||+|++|++|+++|..+|++.|.++++.+++.|++.++ +++++
T Consensus        25 ~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v   96 (259)
T 1q5q_A           25 ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG   96 (259)
T ss_dssp             HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCH
Confidence            5799999999999999999998        36789999999999999999999999999999999999988877 59999


Q ss_pred             HHHHHHHHHH---HHhccCCcceeeeEEEEec--C-CCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC
Q psy15275         85 KVLLAMISNM---LYERRFGPYFVEPMVVGLD--P-ETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL  158 (205)
Q Consensus        85 ~~la~~i~~~---~~~~r~~P~~v~~iv~G~d--~-~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~  158 (205)
                      +.++++++++   .|+.++|||+|++||||||  + + ++|+||++||+|++...+++.++|+|++.++++||+.|+++|
T Consensus        97 ~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~-~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~m  175 (259)
T 1q5q_A           97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSP-KAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL  175 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCC-CCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCC-CCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCC
Confidence            9999999995   4666788999999999999  3 3 589999999999983278999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH-----hhccccCCcEEEEEEeCCc
Q psy15275        159 EPDDLFETIAQALVNAC-----ERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~-----~~d~~~~~~i~i~ii~~~g  194 (205)
                      +++||++++++||..+.     ++|. ++++++|++|+++|
T Consensus       176 s~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~  215 (259)
T 1q5q_A          176 DLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR  215 (259)
T ss_dssp             CHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred             CHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence            99999999999999998     8999 88999999999995

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=1.1e-38  Score=247.40  Aligned_cols=170  Identities=12%  Similarity=0.163  Sum_probs=151.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCce-eeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGT-ALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKM   82 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   82 (205)
                      +.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+   +  .
T Consensus         2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~   76 (180)
T 2z3b_A            2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N   76 (180)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred             CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence            36799999999999999999999999988 889999999999 999999999999999999999999999887   3  2


Q ss_pred             CHHHHHHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccC--CcceeecCchhhhhhhhhhcCCC---
Q psy15275         83 SPKVLLAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQP--SDFVVGGPCSDQLYGMCETLWEP---  156 (205)
Q Consensus        83 ~~~~la~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~--~~~~a~G~g~~~~~~~Le~~~~~---  156 (205)
                      .++.++ .+++.+++++ .|||++++|+|  |    +|+||.+||+|++ .+  +++.|+|+|+++++++||+.|++   
T Consensus        77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~-~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~  148 (180)
T 2z3b_A           77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEV-IEPDDGILAIGSGGNYALAAGRALKKHAGE  148 (180)
T ss_dssp             HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCE-ECCSSSEEEESTTHHHHHHHHHHHHHHHGG
T ss_pred             hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcE-EEeCCCEEEECCCHHHHHHHHHHhhhccCC
Confidence            233333 4566665554 67999999998  3    6999999999998 45  59999999999999999999998   


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      +|+.+|   ++.+||+.+.++|..++++++|.+|
T Consensus       149 ~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i  179 (180)
T 2z3b_A          149 SMSASE---IARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             GCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             CCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence            999999   4779999999999999999999988

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=1.2e-37  Score=239.61  Aligned_cols=166  Identities=16%  Similarity=0.159  Sum_probs=149.3

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      ||+|||+++||||||+|+|.++|.++.+++.+|||+| ++|++++++|..+|++.+.++++.+++.|+.+     .++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~   75 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence            6899999999999999999999988999999999999 99999999999999999999999999988743     26666


Q ss_pred             HHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc--ceeecCchhhhhhhhhhcCC-CCCCHHHH
Q psy15275         88 LAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD--FVVGGPCSDQLYGMCETLWE-PNLEPDDL  163 (205)
Q Consensus        88 a~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~~~~ea  163 (205)
                      +++. +.++++| .+||++++|+|  |    +|+||.+||+|++ .+++  +.|+|+|+++++++||+.|+ ++|+.   
T Consensus        76 ~~l~-~~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~-~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---  144 (171)
T 1m4y_A           76 VELA-KDWRTDRVLRRLEALLLVA--D----KENIFIISGNGEV-IQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---  144 (171)
T ss_dssp             HHHH-HHHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCE-ECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred             HHHH-HHHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCE-EecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence            6654 4666666 56799999998  4    6999999999998 5876  99999999999999999999 99996   


Q ss_pred             HHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275        164 FETIAQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       164 ~~l~~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      .+++++||+.+.+||..++++++|.++
T Consensus       145 ~~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          145 REIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence            678999999999999999999999864

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=1.8e-37  Score=239.24  Aligned_cols=167  Identities=16%  Similarity=0.179  Sum_probs=151.2

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      +|+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+.      +....
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~   74 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS   74 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence            6899999999999999999999988889999999999 9999999999999999999999999998874      45666


Q ss_pred             HHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc---ceeecCchhhhhhhhhhcCC-CCCCHHH
Q psy15275         88 LAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD---FVVGGPCSDQLYGMCETLWE-PNLEPDD  162 (205)
Q Consensus        88 a~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~~~~e  162 (205)
                      +..+++.++++| .||  ++++++|+|    +|+||++||+|++ .+++   +.|+|+|+++++++||+.|+ ++|+.+ 
T Consensus        75 ~~~l~~~~~~~~~~r~--~~~~l~g~d----~p~Ly~~d~~G~~-~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~-  146 (174)
T 1g3k_A           75 AVELAKDWRTDRALRK--LEAMLIVAD----EKESLIITGIGDV-VQPEEDQILAIGSGGNYALSAARALVENTELSAH-  146 (174)
T ss_dssp             HHHHHHHHHHSTTGGG--CCCEEEEEC----SSCEEEEETTTEE-ECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred             HHHHHHHHHhccCcCc--ceEEEEEEC----CCEEEEEcCCCcE-EecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence            677788777776 456  467888886    5999999999998 5766   99999999999999999999 999954 


Q ss_pred             HHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275        163 LFETIAQALVNACERNAVSGWGAVVYIIE  191 (205)
Q Consensus       163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~  191 (205)
                        +++.+||+.+.++|..++++++|++|+
T Consensus       147 --~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          147 --EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             --HHHHHHHHHHHHhccccCCceEEEEec
Confidence              799999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	6e-54
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	2e-48
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	4e-40
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	9e-40
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-37
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-36
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-34
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	4e-34
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	5e-34
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-33
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	3e-31
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	4e-31
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	5e-31
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	2e-28
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	3e-28
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	9e-28
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-27
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	1e-27
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-25
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-24
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-24
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	4e-24
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	5e-24
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	1e-23
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	4e-23
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	4e-23
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	9e-23
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	2e-22
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	9e-22
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-20
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-19
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	2e-18
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	1e-17
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	4e-17
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	9e-11
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	3e-10
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	5e-07

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  169 bits (428), Expect = 6e-54
 Identities = 123/204 (60%), Positives = 167/204 (81%)

Query: 2   SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
           SIM+YNGG+++AM GKNCVAIA D+RFGIQ   +  +FQKIF +G  +Y+GL GLATD Q
Sbjct: 1   SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQ 60

Query: 62  TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
           TV Q+++FR NLYELKE R++ P  L++M++N+LYE+RFGPY+ EP++ GLDP+T +P I
Sbjct: 61  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFI 120

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
            ++DLIGC     DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AVS
Sbjct: 121 CSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVS 180

Query: 182 GWGAVVYIIEQDKVTVRHVKTRMD 205
           G G +V+IIE+DK+T R +K RMD
Sbjct: 181 GMGVIVHIIEKDKITTRTLKARMD 204

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  154 bits (391), Expect = 2e-48
 Identities = 111/201 (55%), Positives = 156/201 (77%), Gaps = 1/201 (0%)

Query: 5   TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
           + NGG +VAMTGK+CVAIACD R G Q   +++ F+KIF  G H+++G+ GLATD  T+ 
Sbjct: 5   SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLN 63

Query: 65  QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
           +  R++ NLY+LKE R + P+    ++S+ LYERRFGPYFV P+V G++ ++ +P I   
Sbjct: 64  EMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123

Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
           DLIGC+++  DF+V G  SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SGWG
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 183

Query: 185 AVVYIIEQDKVTVRHVKTRMD 205
           AVVYII++D+V  R++K R D
Sbjct: 184 AVVYIIKKDEVVKRYLKMRQD 204

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  134 bits (337), Expect = 4e-40
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 11/213 (5%)

Query: 2   SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
           S   +NGG+I+A+ G++   +A D R     +    +  K +++     +G  G   D  
Sbjct: 3   SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 62

Query: 62  TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
           T+ + I  R  +Y+   N+ M+   + AM+S +LY RRF PY+V  ++ GLD E  +  +
Sbjct: 63  TLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAV 121

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCE---------TLWEPNLEPDDLFETIAQALV 172
            + D      Q   F  GG  S  L  + +          +    L  D     +    +
Sbjct: 122 YSFD-PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180

Query: 173 NACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           +A ER+  +G    + I+ ++ +    V  R D
Sbjct: 181 SAAERDVYTGDALRICIVTKEGIREETVSLRKD 213

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  133 bits (335), Expect = 9e-40
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 20/219 (9%)

Query: 5   TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
             NGG+I+ + G++   +A D R     +  +    K+F  G ++ +   G A D   + 
Sbjct: 6   GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65

Query: 65  QKIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
           ++ +     Y    N +K+S       I ++LY +RF PY+V  ++ GLD E  +  + +
Sbjct: 66  KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD-EDGKGAVYS 124

Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----------------PNLEPDDLFET 166
            D +G   +      GG  +  +    +                       L  +++ + 
Sbjct: 125 FDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183

Query: 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
           +  +  +A ER+   G G  + I+ +D V     + + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  127 bits (320), Expect = 1e-37
 Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 3/192 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +I+A+     V +  D R             K+  +   ++    G A DTQ V   + +
Sbjct: 2   TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +   + ++ N         ++   M Y R         ++ G DP+     + ++ + G 
Sbjct: 62  QLGFHSIELNEPPLVHTAASLFKEMCY-RYREDLMAGIIIAGWDPQEG-GQVYSVPMGGM 119

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
           + +   F +GG  S  +YG  +  +   +  ++  +  A AL  A ER+  SG    +  
Sbjct: 120 MVRQ-SFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178

Query: 190 IEQDKVTVRHVK 201
           I +  V  + + 
Sbjct: 179 IAESGVERQVLL 190

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (313), Expect = 1e-36
 Identities = 36/189 (19%), Positives = 84/189 (44%), Gaps = 3/189 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
            I+ +  ++ V +A  K      + L D+  K  Q+  H  +   G A DT    + I+ 
Sbjct: 3   IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
              LY ++E+ ++SP+ + + +   L +  R   PY V  ++ G D +  +P +  +D +
Sbjct: 63  NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122

Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
           G   +   +   G      + + +  + P++  ++  + +   +    +R  +   G +V
Sbjct: 123 GTKVEL-PYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIV 181

Query: 188 YIIEQDKVT 196
            I+++D + 
Sbjct: 182 KIVDKDGIR 190

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  119 bits (298), Expect = 2e-34
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + V +  K+ V +A +KR  +     +   +KI+Q+   M +   G   D Q + + I+ 
Sbjct: 2   TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
             NLYE++  RK + + +  + SN+L   R+ PY V+ ++ G+D E     I ++D IG 
Sbjct: 62  EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS--IYSIDPIGG 119

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
             +  D V  G  S   YG+ E  + P +  D+  E   +A+ +A +R++ SG G  V  
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179

Query: 190 IEQDKVTV 197
           I +D+   
Sbjct: 180 ITEDEFYQ 187

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 4e-34
 Identities = 38/190 (20%), Positives = 78/190 (41%), Gaps = 4/190 (2%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G SI+A+T K+ V +  D R             K+ +V   ++    G A DTQ +   
Sbjct: 8   LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
           +++   LY  +     +     ++   + YE +        +V G D +  +  +  + L
Sbjct: 68  VQYHLELYTSQYGTPSTETA-ASVFKELCYENK-DNLTAGIIVAGYDDKN-KGEVYTIPL 124

Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
            G V++   + + G  S  +YG C+  +  N+  ++  + I  +L  A + +  SG    
Sbjct: 125 GGSVHKL-PYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183

Query: 187 VYIIEQDKVT 196
           + ++    V 
Sbjct: 184 MVVLTAAGVE 193

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 5e-34
 Identities = 35/188 (18%), Positives = 80/188 (42%), Gaps = 2/188 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   +  + +A D R        +   +++ ++   +   + G A D Q     +  
Sbjct: 2   TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +  L+EL+E  ++S      ++SN++Y+ +     +  M+ G   +   P I  +D  G 
Sbjct: 62  QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE-GPTIYYVDSDGT 120

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
             +  D    G      YG+ ++ ++ +L  +D      ++++ A  R+A SG    +Y 
Sbjct: 121 RLK-GDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179

Query: 190 IEQDKVTV 197
           + +D    
Sbjct: 180 VTEDGWIY 187

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 3/187 (1%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + +A   ++ V +A D R        +   +K+ ++  ++   + G A D     + +  
Sbjct: 2   TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
           +  +YEL+   ++S      +++NM+Y+ +     +  M+ G D     P +  +D  G 
Sbjct: 62  QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEGN 119

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
               + F VG   S   YG+ +  +  +LE +  ++   +A+  A  R+A SG    +Y 
Sbjct: 120 RISGATFSVGS-GSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178

Query: 190 IEQDKVT 196
           + +D   
Sbjct: 179 VREDGWI 185

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  111 bits (277), Expect = 3e-31
 Identities = 44/181 (24%), Positives = 93/181 (51%), Gaps = 4/181 (2%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           + V +T K+ V +A ++R  ++   +  N +K+FQ+ ++  + + GL  D Q + + ++ 
Sbjct: 2   TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
              LY L+    M  + +  ++SNML + ++ PY V+ +V G+D     P + ++D  G 
Sbjct: 62  ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT---APHVFSIDAAGG 118

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
                 +   G  S  +YG+ E+ +   +  D+  + + +A+  A +R++ SG    V +
Sbjct: 119 S-VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAV 177

Query: 190 I 190
           I
Sbjct: 178 I 178

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (276), Expect = 4e-31
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 8/195 (4%)

Query: 4   MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
           M Y    ++ + G + V +A D+        + D+  K+F++   + +   G A DT   
Sbjct: 1   MEY----LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56

Query: 64  YQKIRFRQNLYELKENRKMSPKVLLAMISNML--YERRFGPYFVEPMVVGLDPETAEPII 121
            + I+    LY+++   ++SP          L    R   PY V  ++ G D      + 
Sbjct: 57  AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALY 116

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
               L      P      G  +     + +  + P +  +   E + + L    +R  ++
Sbjct: 117 YMDYLAALAKAPFAAHGYG--AFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILN 174

Query: 182 GWGAVVYIIEQDKVT 196
                V II+++ + 
Sbjct: 175 LPTFSVRIIDKNGIH 189

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 5e-31
 Identities = 33/200 (16%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G S+++M   N V IA D           +  +++  VG +  VG+ G  +D Q + + 
Sbjct: 7   TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 66

Query: 67  IRFRQNLYELKENR-----KMSPKVLLAMISNMLYER--RFGPYFVEPMVVGLDPETAEP 119
           ++                  + P  +   ++ ++Y+R  +  P +   +V G+     + 
Sbjct: 67  LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG-DQ 125

Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----PNLEPDDLFETIAQALVNA 174
            +  ++ +  V   S  +  G  +     +   + +     P        E I  A+   
Sbjct: 126 FLRYVN-LLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184

Query: 175 CERNAVSGWGAVVYIIEQDK 194
             R+A S     + II+++ 
Sbjct: 185 YYRDARSSRNFSLAIIDKNT 204

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (259), Expect = 2e-28
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 8/196 (4%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G S++ +  +  V IA D        A   N  +I +V +   +G  G   D Q + Q 
Sbjct: 7   TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQV 66

Query: 67  IRFRQNLYELKE-NRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGN 123
           +       EL       SP+ + + ++  +Y    +  P +   ++ G         +G 
Sbjct: 67  LGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE--SFLGY 124

Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETL--WEPNLEPDDLFETIAQALVNACERNAVS 181
           +D++G     +  +  G  +     +   +   +P L   +  + + + +     R+A S
Sbjct: 125 VDMLGVA-YEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARS 183

Query: 182 GWGAVVYIIEQDKVTV 197
                   + +  V +
Sbjct: 184 YNRFQTATVTEKGVEI 199

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (258), Expect = 3e-28
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 4/185 (2%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +IV +   N V IA D R          N  K+ ++   ++    G A DT+ V Q I  
Sbjct: 2   TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
              L+ L  +R+      L M+   L+ +  G      +V G+DP      + ++   G 
Sbjct: 62  NIELHSLYTSREPRVVSALQMLKQHLF-KYQGHIGAYLIVAGVDPT--GSHLFSIHAHGS 118

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
            +    ++  G  S     + E+ W+ +L  ++  +  + A+      +  SG    V +
Sbjct: 119 TDVG-YYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177

Query: 190 IEQDK 194
           +E  K
Sbjct: 178 MEIGK 182

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 9e-28
 Identities = 24/203 (11%), Positives = 71/203 (34%), Gaps = 6/203 (2%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           + G+ + +   + + +A +++          + +K++++   + V + GL  D + +   
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIG 122
            R     Y    N  +  ++L+  +S++           P+ V  +  G D       + 
Sbjct: 90  ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY-GYQLY 148

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
             +  G        +  G  +     + +  ++ +++ DD  E   + L    + +A++ 
Sbjct: 149 TSNPSGN-YTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTY 207

Query: 183 WGAVVYIIEQDKVTVRHVKTRMD 205
                  I +        +    
Sbjct: 208 DRLEFATIRKGANDGEVYQKIFK 230

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  102 bits (254), Expect = 1e-27
 Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 8/197 (4%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +IVA+T K  V +A D+R        + + +K++    +   G+ G A     + +    
Sbjct: 2   TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRF--------GPYFVEPMVVGLDPETAEPII 121
               YE  E   ++       +++M+              P  V   +   D   A  I+
Sbjct: 62  ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
               + G   + + +   G  S       + ++ P+ + +       ++L +A + ++ +
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181

Query: 182 GWGAVVYIIEQDKVTVR 198
           G   +   I    VT+ 
Sbjct: 182 GGPDLTRGIYPTAVTIT 198

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 4/188 (2%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +I  +  K+ + +  D R          N  KI  +  ++Y    G A DT    Q I  
Sbjct: 2   TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
              L+ L   R         M+  M   R  G      ++ G+D     P + ++   G 
Sbjct: 62  NLELHSLSTGRLPRVVTANRMLKQM-LFRYRGYIGAALVLGGVDVT--GPHLYSIYPHGS 118

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
                 +V  G  S     + E  + P++E ++    +++A+      +  SG    + +
Sbjct: 119 T-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177

Query: 190 IEQDKVTV 197
           I ++K+  
Sbjct: 178 ISKNKLDF 185

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.6 bits (240), Expect = 2e-25
 Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 14/197 (7%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + + +     V +A +KR          + +KI ++ +H+   + GL  D +T+  K
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE---------RRFGPYFVEPMVVGLDPETA 117
            R     +    N  M+ + +   +SN+  +             P+ V  +  G+D +  
Sbjct: 85  ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-- 142

Query: 118 EPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACER 177
            P + +MD  G      D    G  S+      + L+  ++   +  ++    L    E 
Sbjct: 143 GPQLFHMDPSGT-FVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE 201

Query: 178 NAVSGWGAVVYIIEQDK 194
              +     +  ++  +
Sbjct: 202 KL-NATNIELATVQPGQ 217

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.0 bits (233), Expect = 2e-24
 Identities = 29/201 (14%), Positives = 69/201 (34%), Gaps = 13/201 (6%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + + +  K  V +  +KR        +D+ +KI ++  H+   + GL  D +++ + 
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRA-TSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE----------RRFGPYFVEPMVVGLDPET 116
            R     + L  +  ++ + L   + ++                 P+ V  ++ G D + 
Sbjct: 84  ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD 143

Query: 117 AEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACE 176
               + + +  G      +    G  S+         W  +L   +    + + L    E
Sbjct: 144 -GYQLFHAEPSGT-FYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVME 201

Query: 177 RNAVSGWGAVVYIIEQDKVTV 197
                    +  I +QD   +
Sbjct: 202 EKLDENNAQLSCITKQDGFKI 222

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 93.2 bits (231), Expect = 4e-24
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G S+V +T ++ V    +          +    K+ ++   +     G   + + + + 
Sbjct: 18  RGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 69

Query: 67  IRFRQNLYELKENRKMSPK----VLLAMISNMLYERRFGPYFVEPMVVGLDPETA--EPI 120
                ++     +R+           A     ++  +  PY VE  V  +    +   P 
Sbjct: 70  GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 129

Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
           +  +   G +     FVV G  ++ +       +  +L+ +        AL         
Sbjct: 130 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 189

Query: 181 SG 182
             
Sbjct: 190 KR 191

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.6 bits (232), Expect = 4e-24
 Identities = 23/195 (11%), Positives = 67/195 (34%), Gaps = 5/195 (2%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           + G+ + +   + V +A ++R   +        +KI+++   M   + G+ +D   +  +
Sbjct: 29  HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRF----GPYFVEPMVVGLDPETAEPIIG 122
           +R     Y L+    +  + L+  + ++           P+ V  + +G D       + 
Sbjct: 89  LRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHY-GFQLY 147

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
             D  G         +G   +  +  + +   E  +          + L    + + +S 
Sbjct: 148 QSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSA 207

Query: 183 WGAVVYIIEQDKVTV 197
               +  + ++    
Sbjct: 208 EKVEIATLTRENGKT 222

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (230), Expect = 5e-24
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 12/195 (6%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G   V +       +   KR       L+   +KI +   HM + L GLA D + +   
Sbjct: 30  QGSVTVGLRSNTHAVLVALKR---NADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFG----PYFVEPMVVGLDPETAEPIIG 122
           +R + N   L  NRK++ +    ++ +   +        PY V  +++G D       + 
Sbjct: 87  LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG--AHLL 144

Query: 123 NMDLIGCVNQPSDFVVGG---PCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNA 179
                G V +     +G         L    +T  + +  PD+L +   +A+  +    +
Sbjct: 145 EFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDES 204

Query: 180 VSGWGAVVYIIEQDK 194
           ++     + I+ +D 
Sbjct: 205 LTVDNLSIAIVGKDT 219

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 91.7 bits (227), Expect = 1e-23
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 8/195 (4%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + + M   N V +  DK+         ++ +KI  +  ++     GL  D + +   
Sbjct: 21  KGSTALGMKFANGVLLISDKKV-RSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
            R      ++     ++ + L+  +++ + +        PY V  +  G+D     P + 
Sbjct: 80  ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLF 137

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
           + D  G +N+       G   D +    E  ++ NL   +      +AL ++ E      
Sbjct: 138 DCDPAGTINE-YKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELK 196

Query: 183 WGAVVYIIEQDKVTV 197
              +  I   +K  +
Sbjct: 197 APEIASITVGNKYRI 211

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.9 bits (225), Expect = 4e-23
 Identities = 22/198 (11%), Positives = 61/198 (30%), Gaps = 7/198 (3%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           N  + + +  K+ V    +K   +       + +++F V  H+ + + GL  D +++   
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKLV-LSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFG----PYFVEPMVVGLDPETAEPIIG 122
            R   + +       +  K L   ++  ++         P+    M+           + 
Sbjct: 91  AREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVND-GAQLY 149

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
            +D  G           G          E L    +   D+ + +A+ +    +      
Sbjct: 150 MIDPSGVS-YGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA 208

Query: 183 WGAVVYIIEQDKVTVRHV 200
           +   +  + +       +
Sbjct: 209 FELELSWVGELTNGRHEI 226

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.5 bits (224), Expect = 4e-23
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 5/192 (2%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G   V + GKNCV + C++R  ++         K+ ++ SH+ +   GL  D++ + +K
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
            R     + L     ++ + L   ++ +           P+ V  ++ G DP   EP + 
Sbjct: 87  ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLY 146

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
             +  G           G  S  +    E  ++    P  + E +   + +  E      
Sbjct: 147 QTEPSGIY-SSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGA 205

Query: 183 WGAVVYIIEQDK 194
               + +++ D 
Sbjct: 206 KNIEITVVKPDS 217

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (221), Expect = 9e-23
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 7/194 (3%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G   V +   N V +A +K+          +  K+  +  H+ +   G+  D + +  +
Sbjct: 30  GGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRF---GPYFVEPMVVGLDPETAEPIIGN 123
            R     Y L     +    L+  +++++ E         F   +++    E    +  +
Sbjct: 89  ARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQS 148

Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
                           G          E  +  +LE +D   T    L  + E   ++  
Sbjct: 149 DPSGAYF--AWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTED 205

Query: 184 GAVVYIIEQDKVTV 197
              V I  +     
Sbjct: 206 NIEVGICNEAGFRR 219

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (220), Expect = 2e-22
 Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 9/195 (4%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + + +   N V IA +K+      A+++   K+  +   +     G+  D + +  K
Sbjct: 30  QGVTSLGIKATNGVVIATEKKS-SSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88

Query: 67  IR-FRQNLYELKENRKMSPKVLLAMISNML----YERRFGPYFVEPMVVGLDPETAEPII 121
            R      Y+         K+L++ ++ ++          P+ V  ++ G D       +
Sbjct: 89  SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFN-GFSL 147

Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
             +D  G    P      G  S       E  W   LE +D        L  + E    +
Sbjct: 148 YQVDPSGSY-FPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FN 205

Query: 182 GWGAVVYIIEQDKVT 196
           G    + II  +   
Sbjct: 206 GDTIELAIIGDENPD 220

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.0 bits (215), Expect = 9e-22
 Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 11/206 (5%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
           NG + + +   + V  A +K        +     KI  V  H+     GL  D + +  +
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKLI-TSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERRF----GPYFVEPMVVGLDPETAEPIIG 122
            R     ++      +        +   +          P+ V  +  G+D       + 
Sbjct: 88  GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLY 145

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETL---WEPNLEPDDLFETIAQALVNACERNA 179
            ++  G           G          E L       L   +  +  A+ +  A E N 
Sbjct: 146 MLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNK 204

Query: 180 VSGWGAVVYIIEQDKVTVRHVKTRMD 205
              +   +      +    H   + D
Sbjct: 205 EKDFELEISWCSLSETNGLHKFVKGD 230

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (206), Expect = 2e-20
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 13/201 (6%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
              + +A+ GK+C  +   K+              IF +   + + + G   D +    +
Sbjct: 29  TNINSLAVRGKDCTVVISQKKV-PDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIG 122
            +     +  K    M   VL   ++N+           P  V    V +D E   P I 
Sbjct: 88  AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEEL-GPSIY 146

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACE------ 176
             D  G           GP   ++    E  ++ +       E+  + +  A        
Sbjct: 147 KTDPAGYY-VGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDAL 205

Query: 177 RNAVSGWGAVVYIIEQDKVTV 197
               S     V +  +DK   
Sbjct: 206 GTEFSKNDLEVGVATKDKFFT 226

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 81.2 bits (200), Expect = 2e-19
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 9/180 (5%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + + +  K  V +  DKR G       D  +KI+++  H+     GL  D + +  +
Sbjct: 30  RGATAIGIKCKEGVILIADKRVG-SKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
            R    +  L  +  ++ K L   I +   +        P+ V  ++ G++     P + 
Sbjct: 89  ARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE---VPKLY 145

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
             D  G +         G     +    E  +  +L  DD       A+  + E   V  
Sbjct: 146 ETDPSGAL-LEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPE 204

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 13/195 (6%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + V +  K    +   KR     + LA + +KI  V +H+ + + GL  D + +   
Sbjct: 28  QGSATVGLKSKTHAVLVALKR---AQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 84

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETAEPIIG 122
           +R          +R +    L+++I +   +  +R+G  PY V  ++ G D     P I 
Sbjct: 85  MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM--GPHIF 142

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD--DLFETIAQALVNA-CERNA 179
                         +  G  S       E      +E +  +L +   +AL         
Sbjct: 143 QTCPSANYFD-CRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQD 201

Query: 180 VSGWGAVVYIIEQDK 194
           ++     + I+ +D 
Sbjct: 202 LTTKNVSIGIVGKDL 216

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 10/200 (5%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + VA+ GK+C  I   K+        +     +F++  ++   + G+  D+++  Q+
Sbjct: 34  GGLTSVAVRGKDCAVIVTQKKV-PDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNM----LYERRFGPYFVEPMVVGLDPETAEPIIG 122
            R+    ++ K   ++   +L   I+++           P     +++G+D E   P + 
Sbjct: 93  ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQ-GPQVY 151

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCE--TLWEPNLEPDDLFETIAQALVNACERNAV 180
             D  G           G    +     E     + +   +   ET    L      +  
Sbjct: 152 KCDPAGYY-CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF- 209

Query: 181 SGWGAVVYIIEQDKVTVRHV 200
                 V ++  +    R +
Sbjct: 210 KPSEIEVGVVTVENPKFRIL 229

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (183), Expect = 4e-17
 Identities = 29/192 (15%), Positives = 68/192 (35%), Gaps = 8/192 (4%)

Query: 7   NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
            G + V + G++ V +  +K+  +         +KI  +  ++ +   GL  D + V  +
Sbjct: 27  KGSTAVGVRGRDIVVLGVEKKS-VAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85

Query: 67  IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
            R     + L     ++ + +   I+++           P+ +  ++VG D +   P + 
Sbjct: 86  ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDG-TPRLY 144

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
             D  G  +        G  +  +    E  +       D   TI   +    E     G
Sbjct: 145 QTDPSGTYHA-WKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSGG 202

Query: 183 WGAVVYIIEQDK 194
               + ++ +D+
Sbjct: 203 KNIELAVMRRDQ 214

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.3 bits (135), Expect = 9e-11
 Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 13/169 (7%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
           +I+ +       +  D +     T L  N +K+ ++G    +     +            
Sbjct: 2   TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61

Query: 70  RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
            +         K + ++     ++ +  R      V                        
Sbjct: 62  AKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFI---------ISGNGEV 112

Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWE-PNLEPDDLFETIAQALVNACER 177
           +    D    G          + L    +L   ++ E   +A+  A E 
Sbjct: 113 IQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVE---KAMTIAGEI 158

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 54.8 bits (131), Expect = 3e-10
 Identities = 22/189 (11%), Positives = 53/189 (28%), Gaps = 12/189 (6%)

Query: 5   TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH--MYVGLPGLATDTQT 62
           +++  +I A+  K   A++ D +       +  +  +  +   +  +  G  G   D  T
Sbjct: 2   SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFT 61

Query: 63  VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIG 122
           +++K   +   Y     R             +L +       +              ++ 
Sbjct: 62  LFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQD---------TLLLV 112

Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
           +             +  G   +        L +   E     E    AL  A E    + 
Sbjct: 113 SGTGEVI-EPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTN 171

Query: 183 WGAVVYIIE 191
              ++  +E
Sbjct: 172 DQIILEELE 180

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 24/170 (14%), Positives = 61/170 (35%), Gaps = 14/170 (8%)

Query: 10  SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIR 68
           +IV++     V +  D +  +  T +  N +K+ ++ +  +  G  G   D  T+++   
Sbjct: 2   TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61

Query: 69  FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
            +  +++    +        A+     +        +E M++  D + +  I G  D   
Sbjct: 62  RKLEMHQGHLLKS-------AVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGD--V 112

Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWE-PNLEPDDLFETIAQALVNACER 177
              +    +  G   +        L E   L   ++   + ++L  A + 
Sbjct: 113 VQPEEDQILAIGSGGNYALSAARALVENTELSAHEI---VEKSLRIAGDI 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.96
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.95
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.95

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-52  Score=327.05  Aligned_cols=204  Identities=60%  Similarity=1.127  Sum_probs=195.9

Q ss_pred             CcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCc
Q psy15275          2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRK   81 (205)
Q Consensus         2 ~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   81 (205)
                      |||+.||+|+|||+++||||||+|++.+.|.++..++.+|||+|+++++|+++|..+|++.+.++++.+++.|+++++.+
T Consensus         1 ~~~~~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   80 (204)
T d1iruj_           1 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQ   80 (204)
T ss_dssp             CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCeeeCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275         82 MSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD  161 (205)
Q Consensus        82 ~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  161 (205)
                      ++++.+++++++++|.+|++||++++|+||+|+++++|++|.+||.|.......++++|+|+++++++|++.|+++|+++
T Consensus        81 ~~~~~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~~ms~~  160 (204)
T d1iruj_          81 IKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPD  160 (204)
T ss_dssp             CCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred             cchHHHHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccccCCCHH
Confidence            99999999999999998889999999999999864578999999999864456789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                      ||++++++||+.+.++|..++++++|++|+++|++++.+|+|.|
T Consensus       161 ea~~l~~~al~~a~~rd~~sg~~~~v~ii~k~gi~~~~~~~r~D  204 (204)
T d1iruj_         161 HLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD  204 (204)
T ss_dssp             HHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred             HHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCEEEEEEecCCC
Confidence            99999999999999999999999999999999999999999987

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-50  Score=318.55  Aligned_cols=203  Identities=54%  Similarity=1.036  Sum_probs=192.8

Q ss_pred             CcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCc
Q psy15275          2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRK   81 (205)
Q Consensus         2 ~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   81 (205)
                      +|++.||+|+|||+++||||||+|++.+.|.++...+.+|||++ ++++++++|..+|++.+.++++.+++.|+++++.+
T Consensus         2 ~p~~~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~~   80 (204)
T d1rypj_           2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA   80 (204)
T ss_dssp             CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCccCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            79999999999999999999999999999999999999999999 58999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275         82 MSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD  161 (205)
Q Consensus        82 ~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  161 (205)
                      ++++.+++++++.+|.++.+||+++++++|||+.++.|+||++||+|++.+...++++|+|+++++++|++.|+++|+++
T Consensus        81 ~~~~~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~~~ms~~  160 (204)
T d1rypj_          81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE  160 (204)
T ss_dssp             CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred             CcchHHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccccCCCHH
Confidence            99999999999999998888999999999999754669999999999974334578889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                      ||++++++||..+.++|..++++++|++|+++|++++.+|+|.|
T Consensus       161 ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg~~~~~~~l~~D  204 (204)
T d1rypj_         161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCccCCeEEEEEEECCceEEEEeccCCC
Confidence            99999999999999999999999999999999999999999987

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-50  Score=320.99  Aligned_cols=203  Identities=21%  Similarity=0.399  Sum_probs=193.3

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-   79 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-   79 (205)
                      .+||++||+|+|||+++||||||+|+|.+.|.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++ 
T Consensus         2 ~~py~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   81 (222)
T d1ryp1_           2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND   81 (222)
T ss_dssp             CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCccCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcCC
Confidence            4899999999999999999999999999999999899999999999999999999999999999999999999998765 


Q ss_pred             CcCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC----
Q psy15275         80 RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE----  155 (205)
Q Consensus        80 ~~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~----  155 (205)
                      .++++..++++++..++..|.+||+++++++|+|++ ++|+||.+||+|++ +++++.|+|+|+++++++||++|+    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~-~~~~Ly~~D~~G~~-~~~~~~a~G~g~~~a~~~Le~~~~~~~~  159 (222)
T d1ryp1_          82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDED-GKGAVYSFDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQ  159 (222)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTT-SCEEEEEECTTSCE-EEESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhheeeeeEEEEeCC-CCeEEEEECCCcEE-EEeceEEEcccHHHHHHHHHHhhccccc
Confidence            678999999999999998888999999999999987 68999999999998 689999999999999999999886    


Q ss_pred             -------------CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        156 -------------PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       156 -------------~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                                   ++|+.+||++++.+||+.+.++|+.++++++|++|++||++.+.+++|.|
T Consensus       160 ~~~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdGv~~~~~~l~~D  222 (222)
T d1ryp1_         160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             BCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             cCcccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCCEEEEEEecCCC
Confidence                         68999999999999999999999999999999999999999999999986

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-49  Score=312.12  Aligned_cols=193  Identities=20%  Similarity=0.295  Sum_probs=182.6

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      -.+|+|+|||+|+||||||+|+|.+.|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++ ++
T Consensus         6 v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~-~~   84 (205)
T d1ryph_           6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTP-ST   84 (205)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC-CH
T ss_pred             ccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCc-cH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999998865 58


Q ss_pred             HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275         85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF  164 (205)
Q Consensus        85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~  164 (205)
                      ..+++.+++++|.+| +||++++|+||||++ ++|+||++||.|++ .+++|+|+|+|+.+++++||+.|+++||++||+
T Consensus        85 ~~~~~~~~~~~~~~~-~p~~~~~lvaG~d~~-~~p~Ly~~d~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~  161 (205)
T d1ryph_          85 ETAASVFKELCYENK-DNLTAGIIVAGYDDK-NKGEVYTIPLGGSV-HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV  161 (205)
T ss_dssp             HHHHHHHHHHHHHTT-TTCCEEEEEEEEETT-TEEEEEEECTTSCC-EEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhCc-cCceEEEEEEeecCC-CCcEEEEECCCCcE-EecCeEEeecCcHHHHHHHHhhhhcccCHHHHH
Confidence            899999999998875 699999999999986 68999999999998 689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      +++++||+.+.++|+.++++++|++|+++|++++.+.
T Consensus       162 ~l~~~al~~a~~rD~~sg~~v~v~iitk~G~~~~~~~  198 (205)
T d1ryph_         162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY  198 (205)
T ss_dssp             HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCcCCCCEEEEEEcCCceEEEecC
Confidence            9999999999999999999999999999999987653

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-49  Score=309.67  Aligned_cols=190  Identities=18%  Similarity=0.298  Sum_probs=181.3

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      ++|+|||+++||||||+|++.+.|.++..++.+|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++++++.+
T Consensus         1 m~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (198)
T d1rypk_           1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV   80 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             CeEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHH
Q psy15275         88 LAMISNMLYER--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFE  165 (205)
Q Consensus        88 a~~i~~~~~~~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~  165 (205)
                      ++++++++|.+  +++||++++|+||||+.+++|+||++||+|++ .+++|+++|+|+.+++++||++|+++|+++||++
T Consensus        81 ~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~~~~eea~~  159 (198)
T d1rypk_          81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTK-VELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD  159 (198)
T ss_dssp             HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCE-EECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccE-EecceEEEeccchhhHHHHHhcccccCCHHHHHH
Confidence            99999999874  37999999999999975468999999999998 6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        166 TIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       166 l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      ++.+||+.+.++|+.++++++|++|+++|++..
T Consensus       160 l~~~~l~~~~~~d~~s~~~~~v~vi~~dG~~~~  192 (198)
T d1rypk_         160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV  192 (198)
T ss_dssp             HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhcCcCCCcEEEEEEcCCCeEEc
Confidence            999999999999999999999999999998743

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-49  Score=307.58  Aligned_cols=191  Identities=19%  Similarity=0.279  Sum_probs=184.3

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+| +||++++|++|+|++ ++|+||.+||.|++ .+.+|+++|+|+.+++++|++.|+++|+++||++++.
T Consensus        81 ~~l~~~l~~~~-~p~~~~~lvaG~d~~-~~~~l~~~d~~g~~-~~~~~~a~G~g~~~a~~~L~~~~~~~~~~~ea~~l~~  157 (202)
T d1iruh_          81 SLFKEMCYRYR-EDLMAGIIIAGWDPQ-EGGQVYSVPMGGMM-VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTA  157 (202)
T ss_dssp             HHHHHHHHHTT-TTCCEEEEEEEEETT-TEEEEEEECTTSCC-EECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhhc-cceeEEEEEEEeecC-CCcEEEEECCCCce-eecceeEEeCCHHHHHHHHHHhhccCCcHHHHHHHHH
Confidence            99999999876 699999999999986 68999999999998 5889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT  202 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~  202 (205)
                      +||+.+.++|+.++++++|++|+++|++++.++.
T Consensus       158 ~al~~a~~rD~~sg~~i~v~vi~~~G~~~~~~~~  191 (202)
T d1iruh_         158 NALALAMERDGSSGGVIRLAAIAESGVERQVLLG  191 (202)
T ss_dssp             HHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECG
T ss_pred             HHHHHHHhhCCCCCCCEEEEEEeCCCeEEEEcCH
Confidence            9999999999999999999999999999988765

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-48  Score=306.31  Aligned_cols=186  Identities=19%  Similarity=0.254  Sum_probs=180.4

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+|+||||||+|++.++|.++.+.+.+|||+|+++++|+++|..+|++.+.+.++.+++.|++.++.+++++.++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|.+||++++++||+|++  +|+||.+||+|++ .+++++|+|+|+++++++||+.|+++||.+||+++++
T Consensus        81 ~~l~~~~~~~~~~p~~~~~lvaG~d~~--~~~l~~~d~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~~  157 (201)
T d1irul_          81 KLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEGNR-ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR  157 (201)
T ss_dssp             HHHHHHHHTTTTSCCCBEEEEEEECSS--SEEEEEEESSSCE-EECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCceEEEEEEEEecC--CceEEEEccCceE-EEeeeEEecCchHHHHHHHHhhccCCCCHHHHHHHHH
Confidence            999999999888999999999999985  8999999999998 6899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||+.+.++|..++++++|++|+++|++.
T Consensus       158 ~~l~~~~~~d~~sg~~~~v~~i~~~G~~~  186 (201)
T d1irul_         158 RAIYQATYRDAYSGGAVNLYHVREDGWIR  186 (201)
T ss_dssp             HHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred             HHHHHHHHhCCCCCCceEEEEEeCCceEE
Confidence            99999999999999999999999999764

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-48  Score=305.25  Aligned_cols=203  Identities=26%  Similarity=0.449  Sum_probs=195.0

Q ss_pred             CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275          1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR   80 (205)
Q Consensus         1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   80 (205)
                      .+||+.||+|+|||+++||||||+|++.+.|.++...+.+||++|+++++++++|..+|++.+.++++.+++.|++.++.
T Consensus         2 f~p~~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~   81 (213)
T d1iru1_           2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK   81 (213)
T ss_dssp             CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCccCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCC
Confidence            48999999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC-----
Q psy15275         81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----  155 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~-----  155 (205)
                      +++++.+++.+++.+|.++.+|++++.+++|+|++ ++|++|.+||.|++ +++++.++|+|++++++.||+.|+     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~-~~~~l~~~d~~g~~-~~~~~~a~G~g~~~a~~~l~~~~~~~~~~  159 (213)
T d1iru1_          82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGAVYSFDPVGSY-QRDSFKAGGSASAMLQPLLDNQVGFKNMQ  159 (213)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTT-SCEEEEEECTTSCE-EEESEEEEETTHHHHHHHHHHHTTCCSCS
T ss_pred             chhHHHHHHHHHHHHHHHHhhhcccccceEEEecC-CCcEEEecCCccee-eecCeeeecCccHHHHHHHHHhhcccchh
Confidence            99999999999999999888899999999999997 78999999999998 689999999999999999997753     


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275        156 ----PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD  205 (205)
Q Consensus       156 ----~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~  205 (205)
                          ++|+++||++++++||+.+.++|+.++++++|++|+++|++++.+++|.|
T Consensus       160 ~~~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G~~~~~~~~r~D  213 (213)
T d1iru1_         160 NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCEEEEEEeccCC
Confidence                78999999999999999999999999999999999999999999999987

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-48  Score=306.27  Aligned_cols=188  Identities=19%  Similarity=0.252  Sum_probs=181.5

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+|+||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.++.+|++++.+++|+|++ ++|+||.+||+|++ .+++++|+|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~ls~~~~~~~~~p~~~~~~l~G~~~~-~g~~Ly~id~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~l~~  158 (212)
T d1rypl_          81 KILSNLVYQYKGAGLSMGTMICGYTRK-EGPTIYYVDSDGTR-LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGK  158 (212)
T ss_dssp             HHHHHHHHHTTTSCCCBEEEEEEEETT-TEEEEEEEETTCCE-EECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcceEeeeeEeecC-CCCEEEEECCCceE-EecceEEEccCcccchhHHHHhccCCCCHHHHHHHHH
Confidence            999999998888899999999999986 68999999999999 6899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +||+.+.++|+.++++++|++|+++|++..
T Consensus       159 ~al~~~~~rd~~sg~~v~v~vi~~~g~~~~  188 (212)
T d1rypl_         159 RSILAAAHRDAYSGGSVNLYHVTEDGWIYH  188 (212)
T ss_dssp             HHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHhcCCCCCceEEEEEcCCceEEe
Confidence            999999999999999999999999997754

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-47  Score=304.35  Aligned_cols=186  Identities=20%  Similarity=0.230  Sum_probs=179.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+|+||||||+|++.++|.++.+.+.+|||+|++|++|+++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+| +|+++++|+||+|++  +|+||++||.|++ .+++|+|+|+|+++++++|++.|+++||++||++++.
T Consensus        81 ~~l~~~~y~~~-~p~~~~~ivaG~D~~--g~~L~~id~~G~~-~~~~~~a~Gsgs~~a~~~L~~~~~~~~s~~ea~~l~~  156 (220)
T d1irui_          81 RMLKQMLFRYR-GYIGAALVLGGVDVT--GPHLYSIYPHGST-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS  156 (220)
T ss_dssp             HHHHHHHHHTT-TCSCEEEEEEEECSS--CEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHH
T ss_pred             HHHHhhhhhcc-cccceeEEEEEEeCC--CcEEEEEeCCCcE-EEeeEEEEccccHHHHHHHHHhcccCCCHHHHHHHHH
Confidence            99999998764 699999999999985  7999999999998 6899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +||+.+.++|+.++++++|++|+++|+++.
T Consensus       157 ~al~~~~~~D~~sg~~i~i~vitkdg~~~~  186 (220)
T d1irui_         157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFL  186 (220)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTEEECC
T ss_pred             HHHHHhhccCCCCCCcEEEEEEECCCeEEe
Confidence            999999999999999999999999998655

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.1e-47  Score=299.74  Aligned_cols=182  Identities=24%  Similarity=0.402  Sum_probs=175.9

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.+.|.++.+.+.+|||+|+++++|++||..+|++.+.++++.+++.|++.++.+++++.++
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA   80 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      ++++++++.+|.|||++++|+||+|+   +|+||.+||+|++ .+++++|+|+|+++++++|+++|+++|+++||++++.
T Consensus        81 ~~l~~~~~~~~~~p~~~~~lvaG~d~---~p~l~~~d~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~s~eea~~l~~  156 (203)
T d1yarh1          81 TLLSNMLNQVKYMPYMVQLLVGGIDT---APHVFSIDAAGGS-VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVI  156 (203)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEEEESS---SEEEEEECTTCCE-EEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCccceeEEEEEcC---CCeeEecCCccce-ecccccccCCCcHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            99999999888899999999999985   5999999999998 6899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      +||+.+.++|..++++++|++|++++
T Consensus       157 ~~l~~~~~~d~~~~~~v~v~ii~~~~  182 (203)
T d1yarh1         157 RAISAAKQRDSASGGMIDVAVITRKD  182 (203)
T ss_dssp             HHHHHHHHHCTTCCSCCEEEEEETTT
T ss_pred             HHHHHHHHhcCCCCCeEEEEEEECCC
Confidence            99999999999999999999999754

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7.7e-47  Score=295.99  Aligned_cols=187  Identities=28%  Similarity=0.430  Sum_probs=178.5

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|++.+.|.++.+++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++.+++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCccHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++++|.+|.+||++++|+||+|++  +|+||.+||+|++.+..+++|+|+|+++++++|+++|+++|+++||+++++
T Consensus        81 ~~~~~~~~~~~~~p~~~~~lvaG~d~~--~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~~  158 (202)
T d1j2qh_          81 TLTSNLLNSYRYFPYLVQLLIGGIDSE--GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAV  158 (202)
T ss_dssp             HHHHHHHHHTTTSCCCEEEEEEEEETT--EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             HHHHHHHhhhcccceeeEEEEEEEcCC--CceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            999999999888899999999999985  799999999999743456889999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      +||+.+.++|+.++++++|++|+++|++.
T Consensus       159 ~al~~~~~~d~~~g~~v~v~~i~~~g~~~  187 (202)
T d1j2qh_         159 RAIYSAMKRDSASGDGIDVVKITEDEFYQ  187 (202)
T ss_dssp             HHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEEEEECCCEEE
Confidence            99999999999999999999999999753

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-46  Score=297.51  Aligned_cols=193  Identities=19%  Similarity=0.235  Sum_probs=180.7

Q ss_pred             CcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-hcCC
Q psy15275          2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-KENR   80 (205)
Q Consensus         2 ~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~   80 (205)
                      +|++ +|+|+|||+++||||||+|+|.+.|.++..++.+||++|+++++|+++|..+|++.+.+.++.++..+.. .++.
T Consensus         3 ~~~~-~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (217)
T d1iru2_           3 NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (217)
T ss_dssp             SCCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCcC-cccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCC
Confidence            4665 8999999999999999999999999999999999999999999999999999999999999998877764 5678


Q ss_pred             cCCHHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC--CC
Q psy15275         81 KMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW--EP  156 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~  156 (205)
                      +++++.+++++++++|.++  .+|+++++|+||+|.  ++|+||.+||+|++ .++++.|+|+|+++++++|++.|  ++
T Consensus        82 ~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~--~~~~l~~~D~~G~~-~~~~~~a~G~g~~~a~~~Le~~~~~~~  158 (217)
T d1iru2_          82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVA-YEAPSLATGYGAYLAQPLLREVLEKQP  158 (217)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCE-EECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred             CCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcC--CCcEEEEEecCcee-EeeeEEeccCcHHHHHHHHHHHhcccC
Confidence            9999999999999999875  889999999999996  48999999999998 68999999999999999999965  58


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275        157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR  198 (205)
Q Consensus       157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~  198 (205)
                      +|+.+||++++.+||+.+.++|+.++++++|++|+++|++++
T Consensus       159 ~lt~~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G~~~~  200 (217)
T d1iru2_         159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIE  200 (217)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCCEEEc
Confidence            999999999999999999999999999999999999999875

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-47  Score=305.15  Aligned_cols=189  Identities=13%  Similarity=0.142  Sum_probs=179.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++.++.+.+.+|||+|++|++|+++|..+|++.+++.++.+++.|++.++.++++
T Consensus        27 v~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  106 (250)
T d1iruc_          27 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC  106 (250)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHHHHHHHcCCCcch
Confidence            37899999999999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC-CCC
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP-NLE  159 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-~~~  159 (205)
                      +.+++.++.+++.++    +|||++++|++|||++ +||+||.+||+|++ .+++++|+|+|+++++++||++|++ +|+
T Consensus       107 ~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~-~gp~Ly~~Dp~G~~-~~~~~~a~G~gs~~a~~~Le~~y~~~~ms  184 (250)
T d1iruc_         107 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKH-YGFQLYQSDPSGNY-GGWKATCIGNNSAAAVSMLKQDYKEGEMT  184 (250)
T ss_dssp             HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETT-TEEEEEEEETTTEE-EECSEEEESTTTTHHHHHHHHHCCTTCCC
T ss_pred             HHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCC-CCCEEEEEcccccE-eeeeEEEeCcChHHHHHHHHhhcccCCCC
Confidence            999999999988753    6899999999999986 68999999999999 6899999999999999999999985 899


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      ++||++++++||+.+.++|..++++++|++|++++.
T Consensus       185 ~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~~  220 (250)
T d1iruc_         185 LKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG  220 (250)
T ss_dssp             HHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCCC
Confidence            999999999999999999999999999999999874

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-46  Score=298.45  Aligned_cols=191  Identities=19%  Similarity=0.304  Sum_probs=179.0

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhc-----CC
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKE-----NR   80 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~-----~~   80 (205)
                      .+|+|+|||+++||||||+|++.+.|.++...+.+|||+|++|++|+++|..+|++.+.+.++.+++.|++++     +.
T Consensus         6 ~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~   85 (233)
T d1ryp2_           6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEE   85 (233)
T ss_dssp             EEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTT
T ss_pred             cccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence            4899999999999999999999999999999999999999999999999999999999999999998888765     56


Q ss_pred             cCCHHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC---
Q psy15275         81 KMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE---  155 (205)
Q Consensus        81 ~~~~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---  155 (205)
                      .++++.+++++++++|.++  ++||++++|+||+|++ ++|+||.+||+|++ ++++++|+|+|+++++++|++.|+   
T Consensus        86 ~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~-g~~~ly~~d~~G~~-~~~~~~a~G~g~~~a~~~Le~~~~~~~  163 (233)
T d1ryp2_          86 ALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQFLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRES  163 (233)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT-SCEEEEEEETTCCE-ECCSEEECTHHHHHHHHHHTTTCCSGG
T ss_pred             ccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCC-CCeEEEEEcCCCcE-EeeeeEEecCccHHHHHHHHHHHhhcc
Confidence            7899999999999998864  8999999999999987 78999999999998 689999999999999999999997   


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEEEE
Q psy15275        156 --PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVTVR  198 (205)
Q Consensus       156 --~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~~~  198 (205)
                        |+|+++||++++++||+.+.+||+.++++++|++|++| |+++.
T Consensus       164 ~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~  209 (233)
T d1ryp2_         164 DIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK  209 (233)
T ss_dssp             GGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred             cccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEEC
Confidence              78999999999999999999999999999999999998 55544

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-46  Score=295.03  Aligned_cols=183  Identities=22%  Similarity=0.259  Sum_probs=175.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++|+++|..+|++.+.+.++.+++.|++.++.++++..++
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~~a   80 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA  168 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~  168 (205)
                      +++++.+|.++ +|+++++|+||+|++  ||+||.+||+|++ .+++++|+|+|+++++++||+.|+++|+++||+++++
T Consensus        81 ~~l~~~~~~~~-~p~~~~~l~aG~d~~--g~~Ly~id~~G~~-~~~~~~a~Gsg~~~a~~~Le~~~k~~ms~eea~~l~~  156 (222)
T d1rypi_          81 QMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS  156 (222)
T ss_dssp             HHHHHHHHHTT-TCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhh-hccceeEEEEEEcCC--CcEEEEEecCcce-EEeeEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHH
Confidence            99999888654 699999999999984  8999999999998 6899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        169 QALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      +||+.+.++|..++++++|+++++++.
T Consensus       157 ~al~~a~~~D~~sg~~i~i~vi~~~~~  183 (222)
T d1rypi_         157 DAIQAGIWNDLGSGSNVDVCVMEIGKD  183 (222)
T ss_dssp             HHHHHHHHHCTTCCSCEEEEEEETTSC
T ss_pred             HHHHHHhcccCCCCCcEEEEEEEcCCC
Confidence            999999999999999999999998643

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-46  Score=301.74  Aligned_cols=189  Identities=13%  Similarity=0.193  Sum_probs=180.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.++|.++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++++++++++
T Consensus        28 i~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  107 (244)
T d1rypc_          28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV  107 (244)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            37899999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.++++++.+    ++|||++++||||+|++ ++|+||.+||+|++ .+++++|+|+|+++++++||+.|+++|++
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~-~gp~Ly~id~~Gs~-~~~~~~a~G~g~~~a~~~Le~~~~~~ms~  185 (244)
T d1rypc_         108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDR-YGYQLYTSNPSGNY-TGWKAISVGANTSAAQTLLQMDYKDDMKV  185 (244)
T ss_dssp             HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETT-TEEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHhhhhhccccCccceeEEEEEEecC-CCceEEEecCCCcE-eeeeeeeccchhHHHHHHHHhcccCCCCH
Confidence            99999999988653    27999999999999986 58999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      +||++++++||+.+.++|..++++++|++|++++.
T Consensus       186 eeai~l~~~al~~a~~~d~~~~~~iei~ii~~~~~  220 (244)
T d1rypc_         186 DDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN  220 (244)
T ss_dssp             HHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCc
Confidence            99999999999999999999999999999999875

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-45  Score=296.35  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=174.0

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.+.+ ...+.+|||+|++|++|++||..+|++.+.++++.+++.|++.++.++++
T Consensus        30 v~~G~t~VGik~~dgVvlaad~~~~~~~~-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~g~~i~~  108 (245)
T d1irug_          30 VENSSTAIGIRCKDGVVFGVEKLVLSKLY-EEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL  108 (245)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECSCTTB-CTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCcEEEEEeCCEEEEEEecccccccc-ccCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            57999999999999999999999888765 57888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.++++++.+  +  +|||+|++|+||||++ ++|+||++||+|++ .+++++|+|+|++.++++||+.|+++|+.
T Consensus       109 ~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~-~gp~Ly~iDp~G~~-~~~~~~a~G~gs~~a~~~Le~~~~~dmt~  186 (245)
T d1irug_         109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVN-DGAQLYMIDPSGVS-YGYWGCAIGKARQAAKTEIEKLQMKEMTC  186 (245)
T ss_dssp             HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETT-TEEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHTTSCGGGCCH
T ss_pred             HHHHHHHHHHHHHhhccccccccceEEEEEEEcCC-CCceEEEEcCCceE-EeeeEEEECCccHHHHHHHHhhcCCCCCH
Confidence            99999999987654  2  7899999999999986 68999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQD  193 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~  193 (205)
                      +||++++++||+.+.+++...+.+++|.+|+++
T Consensus       187 eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~  219 (245)
T d1irug_         187 RDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL  219 (245)
T ss_dssp             HHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred             HHHHHHHHHHHHHHHhhccCCCceEEEEEEEec
Confidence            999999999999998887777778999999885

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-44  Score=280.90  Aligned_cols=194  Identities=18%  Similarity=0.276  Sum_probs=182.8

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      +||+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++.+++++.+
T Consensus         1 Mt~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (199)
T d1iruk_           1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA   80 (199)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCcHHHH
Confidence            58999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHH
Q psy15275         88 LAMISNMLYER--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFE  165 (205)
Q Consensus        88 a~~i~~~~~~~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~  165 (205)
                      ++.++++++.+  +.+|++++++++|+|++ ++|+||.+||.|.+ .+.++.++|+|+++++++|++.|+++|+++||++
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~aG~d~~-~~~~l~~~~~~g~~-~~~~~~a~G~gs~~a~~~l~~~~~~~~~~~ea~~  158 (199)
T d1iruk_          81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEH-EGPALYYMDYLAAL-AKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE  158 (199)
T ss_dssp             HHHHHHHHHHHHTSSSCCCEEEEEEEEETT-TEEEEEEECTTCCE-EECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCcceeeeecceecc-CCceEEeecccceE-EeeeeeeecccchhhhHHHHHhccCCCCHHHHHH
Confidence            99999988764  37899999999999987 68999999999998 6889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCcEEEEEEeCCcEEE-EEeecc
Q psy15275        166 TIAQALVNACERNAVSGWGAVVYIIEQDKVTV-RHVKTR  203 (205)
Q Consensus       166 l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~-~~~~~~  203 (205)
                      ++++||+.+.++|+.++++++|++|+++|++. ..+.++
T Consensus       159 l~~~al~~~~~~d~~sg~~~~v~vv~~~g~~~~~~~~~~  197 (199)
T d1iruk_         159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISFP  197 (199)
T ss_dssp             HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBCCC
T ss_pred             HHHHHHHHHHHhcCCcCCceEEEEEcCCCeEEcCCccCC
Confidence            99999999999999999999999999999875 344444

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1e-44  Score=287.89  Aligned_cols=186  Identities=16%  Similarity=0.181  Sum_probs=172.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+ +.+...++.+|||+|++|++++++|..+|++.+.+.++.+++.|++.+++++++
T Consensus        19 v~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   97 (221)
T d1yara1          19 VKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI   97 (221)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHHHHHHHcCCcchH
Confidence            3689999999999999999999987 455677888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.++.+++..+    +|||++++|+||||++  ||+||++||+|++ .+++++|+|+|++.++++||++|+++|++
T Consensus        98 ~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~--gp~Ly~id~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  174 (221)
T d1yara1          98 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLFDCDPAGTI-NEYKATAIGSGKDAVVSFLEREYKENLPE  174 (221)
T ss_dssp             HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS--CEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecC--CCeEEEEcCCccE-EEeeEEEECCchHHHHHHHHHHhhccccH
Confidence            999999999887642    7899999999999974  8999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      +||++++.+||+.+.++|. +.++++|++|++++.
T Consensus       175 ~ea~~la~~~l~~~~~~~~-~~~~~ei~~i~~~~~  208 (221)
T d1yara1         175 KEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK  208 (221)
T ss_dssp             HHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC
T ss_pred             HHHHHHHHHHHHHHHhccC-CCCCcEEEEEEcCCC
Confidence            9999999999999988775 567899999998653

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-44  Score=290.47  Aligned_cols=190  Identities=16%  Similarity=0.199  Sum_probs=174.2

Q ss_pred             CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      |+|+|||+++||||||+|++.+.+. ...++.+|||+|++|++|++||..+|++.+.+.++.+++.|++.++++++++.+
T Consensus        35 g~t~igIk~~dgVVlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l  113 (244)
T d1irua_          35 GLTSVAVRGKDCAVIVTQKKVPDKL-LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDML  113 (244)
T ss_dssp             CCEEEEEECSSEEEEEEECCCCCSS-BCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             CccEEEEEcCCEEEEEEeccccccc-ccCCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCchHH
Confidence            4689999999999999999988555 456789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC--CCCCCHH
Q psy15275         88 LAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW--EPNLEPD  161 (205)
Q Consensus        88 a~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~~~~~~  161 (205)
                      ++.++++++.+    ++|||+|++||||||++ +||+||++||+|++ .+++++|+|+|+..++++||++|  .++|+++
T Consensus       114 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~-~g~~Ly~~Dp~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~~d~t~e  191 (244)
T d1irua_         114 CKRIADISQVYTQNAEMRPLGCCMILIGIDEE-QGPQVYKCDPAGYY-CGFKATAAGVKQTESTSFLEKKVKKKFDWTFE  191 (244)
T ss_dssp             HHHHHHHHHHHHHBSSBCCCSEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEEETTHHHHHHHHHHHTTSCCCCCHH
T ss_pred             HHHHHHHHHHHhcccccCccceeeEEEEEcCC-CCcEEEEEcCCccE-EecceEeccCchhHHHHHHHhccccccCCCHH
Confidence            99999987653    48999999999999986 58999999999999 69999999999999999999999  4589999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK  201 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~  201 (205)
                      ||++++++||+.+.++|.. .++++|++|++++..++.+.
T Consensus       192 eai~l~~~~l~~~~~~d~~-~~~iev~ii~~~~~~~~~l~  230 (244)
T d1irua_         192 QTVETAITCLSTVLSIDFK-PSEIEVGVVTVENPKFRILT  230 (244)
T ss_dssp             HHHHHHHHHHHHHTTCCCC-TTSEEEEEEETTEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhcCCC-CCcEEEEEEEeCCCcEEECC
Confidence            9999999999999999975 46799999999998777654

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-44  Score=292.01  Aligned_cols=187  Identities=18%  Similarity=0.207  Sum_probs=172.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhh-hhhhhcCCcCC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQN-LYELKENRKMS   83 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~   83 (205)
                      .++|+|+|||+++||||||+|++.+.+.+ ...+.+||++|++|++|+++|..+|++.++++++.+++ .|++.++.+++
T Consensus        28 v~~G~tvvgi~~~dgVvlaad~r~~~~~~-~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~~~~~~~~~  106 (250)
T d1rypb_          28 VKQGVTSLGIKATNGVVIATEKKSSSPLA-MSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP  106 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCSSB-CGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred             HHcCCCEEEEEeCCEEEEEEecccCCccc-cccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            46899999999999999999999887764 57889999999999999999999999999999999886 58889999999


Q ss_pred             HHHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCC
Q psy15275         84 PKVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLE  159 (205)
Q Consensus        84 ~~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~  159 (205)
                      ++.+++.++++++..    +.|||++++|+||||++ +||+||++||.|++ .+++++|+|+|+++++++||++|+++|+
T Consensus       107 ~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~-~gp~Ly~id~~G~~-~~~~~~a~G~gs~~a~~~Le~~~~~~ms  184 (250)
T d1rypb_         107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEF-NGFSLYQVDPSGSY-FPWKATAIGKGSVAAKTFLEKRWNDELE  184 (250)
T ss_dssp             HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCC-CCCEEEEEcCcEEE-EEeeEEecCcchHHHHHHHHHhcccCCC
Confidence            999999999988543    27899999999999986 58999999999998 6899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      ++||++++.+||+.+.++|. ++.+++|++|++++.
T Consensus       185 ~eea~~la~~al~~~~~~d~-s~~~iev~vi~~~~~  219 (250)
T d1rypb_         185 LEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENP  219 (250)
T ss_dssp             HHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCG
T ss_pred             HHHHHHHHHHHHHHHhhccC-CCCCEEEEEEeCCCc
Confidence            99999999999999999985 678999999999864

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.2e-44  Score=289.79  Aligned_cols=190  Identities=19%  Similarity=0.254  Sum_probs=175.2

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++.+ ...+.+|||+|+++++|++||..+|++.+.++++.+++.|+++++.++++
T Consensus        28 v~~G~t~Igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  106 (243)
T d1j2pa_          28 VKRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV  106 (243)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             HHcCCCEEEEEECCEEEEEEecCccccCc-cccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHHHHHHhhCCCCcH
Confidence            36899999999999999999999999875 45788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +.+++.++.+++..+    +|||+|++|+||+|+   +|+||++||+|++ .+++++|+|+|+++++++||+.|+++|++
T Consensus       107 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~---~p~Ly~~Dp~G~~-~~~~~~a~G~g~~~a~~~Le~~y~~~ms~  182 (243)
T d1j2pa_         107 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE---VPKLYETDPSGAL-LEYKATAIGMGRMAVTEFFEKEYRDDLSF  182 (243)
T ss_dssp             HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS---SEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHHhhhccCCccceeEEEEEecC---CceEEEEeccCce-eeeeEEEeCCCcHHHHHHHHhhcccCCCH
Confidence            999999999987642    789999999999985   5999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEe
Q psy15275        161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHV  200 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~  200 (205)
                      +||++++++||+.+.++|..+ ++++|+++++++..++.+
T Consensus       183 eeai~la~~~l~~~~~~d~~~-~~iei~iv~~~~~~~~~l  221 (243)
T d1j2pa_         183 DDAMVLGLVAMGLSIESELVP-ENIEVGYVKVDDRTFKEV  221 (243)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCG-GGEEEEEEETTTCCCEEC
T ss_pred             HHHHHHHHHHHHHHHhcccCC-CceEEEEEEeCCCcEEEC
Confidence            999999999999999999755 689999999875445544

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-44  Score=290.45  Aligned_cols=188  Identities=15%  Similarity=0.178  Sum_probs=172.8

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.+ +...++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus        23 ~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1rype_          23 IKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV  101 (242)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHHHHcCCCCch
Confidence            468999999999999999999999987 4567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----------cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC
Q psy15275         85 KVLLAMISNMLYER----------RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW  154 (205)
Q Consensus        85 ~~la~~i~~~~~~~----------r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~  154 (205)
                      +.++++++++++..          ++|||+|++|+||+|++ ++|+||++||+|++ .+++++|+|+|+++++++||++|
T Consensus       102 ~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~-~~p~L~~idp~G~~-~~~~~~a~G~gs~~~~~~Le~~~  179 (242)
T d1rype_         102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD-DGYQLFHAEPSGTF-YRYNAKAIGSGSEGAQAELLNEW  179 (242)
T ss_dssp             HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccc-cceEEEEEcCCCce-eccceeecccchHHHHHHHHHhc
Confidence            99999999977532          26899999999999987 68999999999999 68999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEE
Q psy15275        155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVT  196 (205)
Q Consensus       155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~  196 (205)
                      +++|+++||++++++||+.+.++|..+ ++++|++|+++ |++
T Consensus       180 ~~~ms~~ea~~la~~~l~~~~~~~~~~-~~~~v~~i~~~~g~~  221 (242)
T d1rype_         180 HSSLTLKEAELLVLKILKQVMEEKLDE-NNAQLSCITKQDGFK  221 (242)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSSCCCT-TSEEEEEEETTTEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhccCCC-CceEEEEEECCCCeE
Confidence            999999999999999999999988754 57999999874 643

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-44  Score=288.67  Aligned_cols=185  Identities=17%  Similarity=0.232  Sum_probs=171.4

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+.+.+ ..++.+|||+|+++++|+++|..+|++.+.+.++.++..|++.+++++++
T Consensus        24 v~~G~t~vgik~~dgVvlaad~~~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~  102 (234)
T d1irue_          24 IKLGSTAIGIQTSEGVCLAVEKRITSPLM-EPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV  102 (234)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTTB-CTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEecCccCCCc-ccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence            46899999999999999999999988764 47888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc---------cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275         85 KVLLAMISNMLYER---------RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE  155 (205)
Q Consensus        85 ~~la~~i~~~~~~~---------r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  155 (205)
                      +.+++.++++++.+         +.|||+|++|+||||++  ||+||.+||+|++ .+++++|+|+|+++++++||+.|+
T Consensus       103 ~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~--gp~Ly~idp~G~~-~~~~~~a~G~gs~~~~~~Le~~~~  179 (234)
T d1irue_         103 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK--GPQLFHMDPSGTF-VQCDARAIGSASEGAQSSLQELYH  179 (234)
T ss_dssp             HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETT--EEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCC--CCEEEEEecCccc-ceeeeEEeCCchHHHHHHHHHhhc
Confidence            99999999987642         26899999999999984  8999999999998 689999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      ++|+++||++++++||+.+.++|. ++++++|++|++++
T Consensus       180 ~~~~~eeai~~a~~al~~~~~~~~-~~~~iei~ii~~~~  217 (234)
T d1irue_         180 KSMTLKEAIKSSLIILKQVMEEKL-NATNIELATVQPGQ  217 (234)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEECSSS
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccC-CCCCEEEEEEECCC
Confidence            999999999999999999888775 56789999999864

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-44  Score=291.61  Aligned_cols=187  Identities=17%  Similarity=0.167  Sum_probs=172.2

Q ss_pred             cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275          7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV   86 (205)
Q Consensus         7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   86 (205)
                      .|+|+|||+++||||||+|+|.+.+ ++..++.+||++|+++++|++||+.+|++.+.++++.+++.|++.++.+++++.
T Consensus        29 ~g~T~igik~~dgVvlaad~r~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (243)
T d1rypa_          29 TNINSLAVRGKDCTVVISQKKVPDK-LLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDV  107 (243)
T ss_dssp             TCCCEEEEECSSEEEEEEECCCCCT-TBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred             cCceEEEEEcCCEEEEEEecccccc-ccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            4779999999999999999998864 566788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC------
Q psy15275         87 LLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP------  156 (205)
Q Consensus        87 la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~------  156 (205)
                      +++.++++++.++    .|||+|++|+||||++ +||+||++||+|++ .+++++|+|+|+..++++||++|++      
T Consensus       108 ~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~g~~Ly~~Dp~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~  185 (243)
T d1rypa_         108 LAKRMANLSQIYTQRAYMRPLGVILTFVSVDEE-LGPSIYKTDPAGYY-VGYKATATGPKQQEITTNLENHFKKSKIDHI  185 (243)
T ss_dssp             HHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHHhhcccccCccceEEEEEEccC-CCCeEEEEcCCEEE-EecceEEeCccHHHHHHHHHHHhhccccccc
Confidence            9999999876532    7899999999999986 68999999999999 6899999999999999999999974      


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        157 -NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       157 -~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                       +++.+||++++++||+.+.++|. ++++++|++++++|++.
T Consensus       186 ~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~g~~~  226 (243)
T d1rypa_         186 NEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKFFT  226 (243)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETTEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCCceEE
Confidence             56899999999999999999997 57899999999998653

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-44  Score=285.97  Aligned_cols=187  Identities=17%  Similarity=0.300  Sum_probs=173.1

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++.+....+.+|||+|++|++|++||..+|++.+.+.++.+++.|++.+++++++
T Consensus        25 v~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~  104 (241)
T d1rypd_          25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV  104 (241)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence            36899999999999999999999999988777899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC---C
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP---N  157 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~---~  157 (205)
                      +.+++.++.+++.++    +|||+|++|+||||+.+++|+||.+||+|++ .+++++|+|+|+++++++|++.|++   +
T Consensus       105 ~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~~~~  183 (241)
T d1rypd_         105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY-SSWSAQTIGRNSKTVREFLEKNYDRKEPP  183 (241)
T ss_dssp             HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHTTCCTTSCC
T ss_pred             HHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEE-EeeCeEEECcCHHHHHHHHHHhhhcccCC
Confidence            999999999887642    7899999999999975468999999999998 6899999999999999999999964   6


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275        158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV  195 (205)
Q Consensus       158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~  195 (205)
                      |+.+||++++++||+.+.+++   +.+++|+++++++.
T Consensus       184 ~t~~e~i~lal~al~~~~~~~---~~~iei~ii~~d~~  218 (241)
T d1rypd_         184 ATVEECVKLTVRSLLEVVQTG---AKNIEITVVKPDSD  218 (241)
T ss_dssp             CSHHHHHHHHHHHHHHHHCSC---STTEEEEEEETTTE
T ss_pred             CCHHHHHHHHHHHHHHHhcCC---CCcEEEEEEECCCC
Confidence            999999999999999988654   57899999999864

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-44  Score=286.30  Aligned_cols=186  Identities=19%  Similarity=0.187  Sum_probs=172.7

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++.   ..+.+|||+|+++++|++||..+|++.++++++.+++.|++.+++++++
T Consensus        28 v~~g~t~igi~~~dgvvlaad~~~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  104 (233)
T d1rypf_          28 IKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAV  104 (233)
T ss_dssp             HHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHcCCCEEEEEECCeEEEEEeccccccC---CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHHhhhhhcCCCCcH
Confidence            3689999999999999999999998765   4678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc----CCC
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL----WEP  156 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~----~~~  156 (205)
                      +.+++.++++++.+    ..|||++++|+||||++  ||+||++||+|++ .+++++|+|+|++.++++|+++    |++
T Consensus       105 ~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~--g~~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~~  181 (233)
T d1rypf_         105 ERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS--GAHLLEFQPSGNV-TELYGTAIGARSQGAKTYLERTLDTFIKI  181 (233)
T ss_dssp             HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEESEEEESTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcccccCCccceEEEEEEcCC--CCEEEEEccccce-ecccEEEecCchHHHHHHHHHHHhhcccc
Confidence            99999999988653    26899999999999985  7999999999998 5899999999999999999876    478


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE
Q psy15275        157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT  196 (205)
Q Consensus       157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~  196 (205)
                      +|+++||++++++||..+.++|..++++++|++|++++.-
T Consensus       182 dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~~  221 (233)
T d1rypf_         182 DGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPF  221 (233)
T ss_dssp             CSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCCe
Confidence            9999999999999999999999999999999999998753

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-43  Score=285.19  Aligned_cols=184  Identities=14%  Similarity=0.108  Sum_probs=171.5

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++.++ ....+||++|+++++|+++|..+|++.++++++.+++.|++.+++++++
T Consensus        27 v~~G~t~igik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  105 (244)
T d1rypg_          27 VENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI  105 (244)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEecccCCCCcc-ccccceEEEccCceEEEEccchhhHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence            367999999999999999999999998765 5667899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhh---cCCCC
Q psy15275         85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCET---LWEPN  157 (205)
Q Consensus        85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~---~~~~~  157 (205)
                      +.+++.++.+++.++    .|||++++|+||||++  ||+||.+||+|++ .+++++|+|+|+..++++||+   .|+++
T Consensus       106 ~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~--gp~Ly~idp~Gs~-~~~~~~a~G~gs~~~~~~Lek~~~~~~~~  182 (244)
T d1rypg_         106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLYMLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEG  182 (244)
T ss_dssp             HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCC--CCEEEEEcCCccE-EecCeEecCCccHHHHHHHHHHHhhCCCC
Confidence            999999999987643    6899999999999975  8999999999998 689999999999999999996   69999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeC
Q psy15275        158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQ  192 (205)
Q Consensus       158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~  192 (205)
                      |+++||++++++||..+.+++..++.+++|.+|+.
T Consensus       183 mt~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~  217 (244)
T d1rypg_         183 LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL  217 (244)
T ss_dssp             CCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEE
Confidence            99999999999999999988888888899999975

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-43  Score=283.54  Aligned_cols=187  Identities=17%  Similarity=0.163  Sum_probs=175.4

Q ss_pred             ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275          6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK   85 (205)
Q Consensus         6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (205)
                      ++|+|+|||+++||||||+|++.+++.+ ..++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.++++++++
T Consensus        29 ~~G~tvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (233)
T d1irub_          29 AGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA  107 (233)
T ss_dssp             HTSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCCEEEEEeCCEEEEEEeCCcccCCc-cccccceEEEecCceEEEEeccchHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            5899999999999999999999999875 578899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275         86 VLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD  161 (205)
Q Consensus        86 ~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  161 (205)
                      .+++.++++++.++    .||++++++++|+|++  +|+||++||.|++ .++++.|+|+|+++++++|++.|+++|+++
T Consensus       108 ~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~--~~~ly~id~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~e  184 (233)
T d1irub_         108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG--RPYLFQSDPSGAY-FAWKATAMGKNYVNGKTFLEKRYNEDLELE  184 (233)
T ss_dssp             HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSS--SEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHHhhccccccceEEEeeeecccC--CceEEEEcCCcce-EeccceecCCcHHHHHHHHHhhcccCccHH
Confidence            99999999887542    7899999999999974  8999999999999 689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275        162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV  197 (205)
Q Consensus       162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~  197 (205)
                      ||++++.+||+.+.++|.. +++++|++++++|++.
T Consensus       185 ea~~l~~~~L~~~~~~d~~-~~~vev~ii~~~g~~~  219 (233)
T d1irub_         185 DAIHTAILTLKESFEGQMT-EDNIEVGICNEAGFRR  219 (233)
T ss_dssp             HHHHHHHHHHHTTCCSCCC-SSSEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHhccCC-CCcEEEEEEeCCCeEE
Confidence            9999999999999999884 5789999999999764

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-43  Score=282.91  Aligned_cols=185  Identities=17%  Similarity=0.163  Sum_probs=168.9

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+++..   .+.+|||+|+++++|++||..+|++.+++.++.+++.|++.+++++++
T Consensus        26 v~~G~t~vgik~~dgVvlaad~~~~~~~~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~  102 (238)
T d1iruf_          26 VKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV  102 (238)
T ss_dssp             HHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccccCCC---CccceEEEeCCceEEEEeccchHHHHHHHHHHHHHHHHHHHcCCCcch
Confidence            46899999999999999999999998864   466899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC--
Q psy15275         85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL--  158 (205)
Q Consensus        85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~--  158 (205)
                      +.+++.|+.+.+.  ++  .|||++++|+||||++  ||+||++||+|++ .+++++|+|+|++.++++||++|+++|  
T Consensus       103 ~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~--gp~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~Lek~~~~~~~~  179 (238)
T d1iruf_         103 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM--GPHIFQTCPSANY-FDCRAMSIGARSQSARTYLERHMSEFMEC  179 (238)
T ss_dssp             HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT--EEEEEEECSSSCE-EEESEEEESTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCC--CceEEEEcCCCCE-EeeeeEEECCCchhhHHHHHhhcccccCC
Confidence            9999999987543  33  6899999999999974  7999999999999 589999999999999999999999854  


Q ss_pred             CHHHHHHHHHHHHHHHHhhcc-ccCCcEEEEEEeCCcE
Q psy15275        159 EPDDLFETIAQALVNACERNA-VSGWGAVVYIIEQDKV  195 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~-~~~~~i~i~ii~~~g~  195 (205)
                      +++||++++++||+.++.++. .++.+++|++|++++.
T Consensus       180 ~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~  217 (238)
T d1iruf_         180 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE  217 (238)
T ss_dssp             CHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE
T ss_pred             CHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCC
Confidence            899999999999998886654 5788999999999853

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.2e-42  Score=272.92  Aligned_cols=190  Identities=17%  Similarity=0.212  Sum_probs=175.1

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+|+||||||+|++.++|.++...+.+||++|+++++|+++|..+|++.+.+.++.+++.|++.++.++++..++
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCccHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc---CCcceeeeEEEEecCC----CCCcEEEEEcCCCccc-cCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275         89 AMISNMLYERR---FGPYFVEPMVVGLDPE----TAEPIIGNMDLIGCVN-QPSDFVVGGPCSDQLYGMCETLWEPNLEP  160 (205)
Q Consensus        89 ~~i~~~~~~~r---~~P~~v~~iv~G~d~~----~~~p~ly~id~~G~~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  160 (205)
                      +++++++|.++   .+|+++.++++|++..    .++|+||.+||+|+.. +..+|.|+|+|+++++++||++|+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~~mt~  160 (224)
T d1q5qh_          81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE  160 (224)
T ss_dssp             HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhcccCCH
Confidence            99999988753   7889999888887731    1589999999999963 24578999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCc-------EEEEEEeCCcEEEE
Q psy15275        161 DDLFETIAQALVNACERNAVSGWG-------AVVYIIEQDKVTVR  198 (205)
Q Consensus       161 ~ea~~l~~~~l~~~~~~d~~~~~~-------i~i~ii~~~g~~~~  198 (205)
                      +||++++++||+.+.++|..+|++       +++++++++|++..
T Consensus       161 ~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g~~~l  205 (224)
T d1q5qh_         161 ETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHV  205 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCcEEEc
Confidence            999999999999999999999874       88999999998753

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-42  Score=278.47  Aligned_cols=184  Identities=15%  Similarity=0.241  Sum_probs=166.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP   84 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   84 (205)
                      .++|+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++|++||..+|++.+.+.++.+++.|++.++.++++
T Consensus        25 v~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~v  103 (243)
T d1irud_          25 VKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTV  103 (243)
T ss_dssp             HHTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHHHhcCCCccH
Confidence            4699999999999999999999965 667778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC--
Q psy15275         85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL--  158 (205)
Q Consensus        85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~--  158 (205)
                      +.++++++++++..    +.|||++++|++|||++ ++|+||++||+|++ .+++++|+|+|++.++++||++|+++|  
T Consensus       104 ~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~-~~p~Ly~idp~G~~-~~~~~~a~G~gs~~a~~~Lek~~~~~~~~  181 (243)
T d1irud_         104 EYITRYIASLKQRYTQSNGRRPFGISALIVGFDFD-GTPRLYQTDPSGTY-HAWKANAIGRGAKSVREFLEKNYTDEAIE  181 (243)
T ss_dssp             HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSS-SCEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHTTTCCSSTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCC-CCCEEEEecCcEEE-EeccEEEECCChHHHHHHHHHhcccCCCc
Confidence            99999999988653    27999999999999976 68999999999998 689999999999999999999999998  


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275        159 EPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK  194 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g  194 (205)
                      +.++++++++++|...   +..++.+++|+++++++
T Consensus       182 ~~~~~i~~ai~~l~~~---~~~~~~~vei~ii~k~~  214 (243)
T d1irud_         182 TDDLTIKLVIKALLEV---VQSGGKNIELAVMRRDQ  214 (243)
T ss_dssp             SHHHHHHHHHHHHHTT---SCTTSTTCCEEEEESSS
T ss_pred             cHHHHHHHHHHHHHHH---hcCCCCcEEEEEEECCC
Confidence            6677787777777654   44556789999999974

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.1e-42  Score=273.83  Aligned_cols=188  Identities=15%  Similarity=0.207  Sum_probs=159.0

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMS   83 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~   83 (205)
                      .++|+|+|||+|+||||||+|+|.+        ..+||++|++|++|+++|..+|++.|+++++.+++.|+++++ .+++
T Consensus        16 v~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~~~~   87 (227)
T d1q5qa_          16 IARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVT   87 (227)
T ss_dssp             HHTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred             HhcCCCEEEEEECCEEEEEEccCCC--------CcceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            3579999999999999999999854        357999999999999999999999999999999999999988 4689


Q ss_pred             HHHHHHHHHHHH---HhccCCcceeeeEEEEecCC--CCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC
Q psy15275         84 PKVLLAMISNML---YERRFGPYFVEPMVVGLDPE--TAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL  158 (205)
Q Consensus        84 ~~~la~~i~~~~---~~~r~~P~~v~~iv~G~d~~--~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~  158 (205)
                      ++.+++.+++++   +.+++|||+|++|+||||..  .++|+||++||+|++.....+++.|.++++++++|+++|+++|
T Consensus        88 ~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~~Le~~y~~~m  167 (227)
T d1q5qa_          88 GRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL  167 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHHHHHHhccCCC
Confidence            999999888864   33457899999999999963  2479999999999974233456667788899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcc----ccCCcEEEEEEeCCcE--EEEEe
Q psy15275        159 EPDDLFETIAQALVNACERNA----VSGWGAVVYIIEQDKV--TVRHV  200 (205)
Q Consensus       159 ~~~ea~~l~~~~l~~~~~~d~----~~~~~i~i~ii~~~g~--~~~~~  200 (205)
                      |++||++++++||+.+.++|.    ..+.+++|++++++|.  .|+.+
T Consensus       168 s~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l  215 (227)
T d1q5qa_         168 DLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRI  215 (227)
T ss_dssp             CHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEEC
T ss_pred             CHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEc
Confidence            999999999999999998875    3467899999999885  34443

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=3.7e-30  Score=197.18  Aligned_cols=177  Identities=14%  Similarity=0.069  Sum_probs=132.3

Q ss_pred             cccCceEEEEEeCCEEEEeEecccccCceeeec-cccceEEecCe-EEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcC
Q psy15275          5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSH-MYVGLPGLATDTQTVYQKIRFRQNLYELKENRKM   82 (205)
Q Consensus         5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~-~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   82 (205)
                      +.+|||+|||+|+||||||+|+|.|.|..+..+ ..+|+++++++ ++++.+|..+|.+.+.+.++.+.+.+........
T Consensus         2 ~~~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T d2z3ba1           2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAA   81 (180)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CCCCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhhccccchhH
Confidence            568999999999999999999999999876665 57889999774 8888899999999999988877665442221111


Q ss_pred             CHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHH
Q psy15275         83 SPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDD  162 (205)
Q Consensus        83 ~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~e  162 (205)
                      ... .........+.++..++......        ++.++..++.+.. ...+|.|+|+|+.+|++.|++.|+++|+.+|
T Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~a~GSGs~~A~g~l~~~~~~~~s~~e  151 (180)
T d2z3ba1          82 VEL-AKEWRSDKVLRKLEAMLIVMNQD--------TLLLVSGTGEVIE-PDDGILAIGSGGNYALAAGRALKKHAGESMS  151 (180)
T ss_dssp             HHH-HHHHHHCTTGGGCCCCEEEECSS--------CEEEECTTCCEEC-CSSSEEEESTTHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHH-HHHHhHHHHHHHhhcceeeeecc--------ccccccCCceeec-ccccEEEEcCchHHHHHHHHHHhhcCCCccC
Confidence            111 11111111122223333333333        4555555555555 4567889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275        163 LFETIAQALVNACERNAVSGWGAVVYIIE  191 (205)
Q Consensus       163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~  191 (205)
                      |++|+++||+.|.++|+.++++++|.+|.
T Consensus       152 A~~l~~~Al~~A~e~dvyT~~~~~~~~i~  180 (180)
T d2z3ba1         152 ASEIARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHhhcEEcCCcEEEEEeC
Confidence            99999999999999999999999998763

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.3e-28  Score=186.85  Aligned_cols=170  Identities=11%  Similarity=-0.028  Sum_probs=133.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL   88 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   88 (205)
                      ||+|||+++||||||+|+|.|.|.++.+++.+|+++|+++++++.+|..+|.+.+.+.+..+...+....     .....
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~~-----~~~~~   75 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHHHHhhcc-----chhhH
Confidence            7999999999999999999999999999999999999999999999999999988877666554333211     11112


Q ss_pred             HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC-CCCCHHHHHHHH
Q psy15275         89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-PNLEPDDLFETI  167 (205)
Q Consensus        89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~-~~~~~~ea~~l~  167 (205)
                      ......+... ..++....++.+.+.  ++|+++..|+.|.. ...+|.|+|+|+.+|++.|+..|+ ++++   |.+++
T Consensus        76 ~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~d~~g~~-~~~~~~a~GSGs~~A~g~l~~~~~~~~~~---a~el~  148 (171)
T d1m4ya_          76 VELAKDWRTD-RVLRRLEALLLVADK--ENIFIISGNGEVIQ-PDDDAAAIGSGGPYALAAAKALLRNTDLS---AREIV  148 (171)
T ss_dssp             HHHHHHHHHC-TTGGGCCCEEEEECS--SCEEEECTTSCEEC-CSSSEEEESTTHHHHHHHHHHHHHHCCCC---HHHHH
T ss_pred             HHHHHHHHHh-hhhcccccccceecC--CcceEEecCCceee-ecCCEEEEcchHHHHHHHHHhhccCCCCC---HHHHH
Confidence            2222222211 112233344545555  48999999999998 688999999999999999998765 5665   78899


Q ss_pred             HHHHHHHHhhccccCCcEEEEEE
Q psy15275        168 AQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       168 ~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      ++||+.|.++|+.++++++|..|
T Consensus       149 ~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         149 EKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHhhceEcCCcEEEEEC
Confidence            99999999999999999998753

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=2.5e-27  Score=179.99  Aligned_cols=171  Identities=12%  Similarity=0.098  Sum_probs=130.0

Q ss_pred             ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCe-EEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275          9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL   87 (205)
Q Consensus         9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   87 (205)
                      ||+|||+|+||||||+|+|.|.|.++.+++.+||++|+++ ++++.+|...+.+.+.+..+.+.+.+      .......
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   74 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMH------QGHLLKS   74 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHT------TTCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhh------cCcchhH
Confidence            7999999999999999999999999999999999999887 55566666666665555444333222      2233334


Q ss_pred             HHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHH
Q psy15275         88 LAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETI  167 (205)
Q Consensus        88 a~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~  167 (205)
                      +..+...++..+..+.....++ |.+.+ +++.++..|+.|.+ ++.++.|+|+|+.+|++.|+.+|+  ++.+||.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~a~GSGs~~A~~~l~~~~~--~~~~~A~ela  149 (173)
T d1g3ka_          75 AVELAKDWRTDRALRKLEAMLI-VADEK-ESLIITGIGDVVQP-EEDQILAIGSGGNYALSAARALVE--NTELSAHEIV  149 (173)
T ss_dssp             HHHHHHHHHHSTTGGGCCCEEE-EECSS-CEEEEETTTEEECC-CTTCEEEESTTHHHHHHHHHHHHH--HCCCCHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccc-cccCC-CcceecccCceEEe-cCCCEEEecchHHHHHHHHHHhhh--cCCCCHHHHH
Confidence            4444444444333333344444 45554 68999999999998 689999999999999999998874  4555799999


Q ss_pred             HHHHHHHHhhccccCCcEEEEEE
Q psy15275        168 AQALVNACERNAVSGWGAVVYII  190 (205)
Q Consensus       168 ~~~l~~~~~~d~~~~~~i~i~ii  190 (205)
                      ++||+.|.++|+.++++++|..|
T Consensus       150 ~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         150 EKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             HHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHHHhhcEEcCCcEEEEEC
Confidence            99999999999999998888765